AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1189630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1189630 MtrunA17_Chr8g0358201 93.596 406 4 2 3 386 4 409 0.0 755
Msa1189630 MtrunA17_Chr2g0292511 40.659 364 193 5 43 386 20 380 9.87e-83 258
Msa1189630 MtrunA17_Chr2g0286181 36.620 142 57 6 51 190 322 432 2.27e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1189630 AT1G56050.1 76.574 397 72 1 11 386 17 413 0.0 596
Msa1189630 AT1G30580.1 39.394 363 199 3 43 386 20 380 1.34e-78 248

Find 78 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGCAACATATGATCTTT+TGG 0.234785 8_1:+31699661 Msa1189630:CDS
AACATTTGCCACATATATAA+TGG 0.237147 8_1:-31698920 None:intergenic
ATTCTTTCTCCTTACAATAA+TGG 0.263987 8_1:+31695015 Msa1189630:exon
GATCATATGTTGCTCTAATT+AGG 0.267758 8_1:-31699655 None:intergenic
TTTGGCTCTATTGTACAAAA+AGG 0.279235 8_1:-31697363 None:intergenic
TTTCAAAGGATGAACTAAAC+TGG 0.308459 8_1:-31695050 None:intergenic
CTTGGTGCAGCACGAGAAAA+AGG 0.311357 8_1:+31702328 Msa1189630:CDS
CACATATATAATGGGTTTCA+TGG 0.318050 8_1:-31698911 None:intergenic
AGCAATATCTACAAACTCTA+TGG 0.327069 8_1:-31697466 None:intergenic
AACAAACAATGATTACGTTA+TGG 0.354064 8_1:+31698966 Msa1189630:CDS
ATAAAGGTTAAAAGATTGTT+TGG 0.355397 8_1:-31695101 None:intergenic
TACAATGACTTTGTTGCTGC+TGG 0.356603 8_1:+31702301 Msa1189630:CDS
ACATTTGCCACATATATAAT+GGG 0.363510 8_1:-31698919 None:intergenic
ACAAACAATGATTACGTTAT+GGG 0.375351 8_1:+31698967 Msa1189630:CDS
AGCACTTGGAGACGAGAATC+TGG 0.379539 8_1:-31697405 None:intergenic
ATAGATAAACACCTGAAGTA+TGG 0.386070 8_1:-31697827 None:intergenic
ATAGAGTTTGTAGATATTGC+TGG 0.390908 8_1:+31697468 Msa1189630:CDS
GCTTTGGTTGAACTCCATAA+AGG 0.404302 8_1:-31695117 None:intergenic
TAGTTCATCCTTTGAAATCA+AGG 0.408481 8_1:+31695056 Msa1189630:CDS
TTTGTTGCTGCTGGTTCACT+TGG 0.410289 8_1:+31702310 Msa1189630:CDS
GAAGAAGAATATGAAAGCTT+TGG 0.411596 8_1:-31695133 None:intergenic
AGGGTAGATTTGCCAACATT+AGG 0.411876 8_1:-31695199 None:intergenic
CTTGACTTGCACCCTTTACA+AGG 0.415044 8_1:-31697491 None:intergenic
CAAGAATATTTGAAATCTCT+TGG 0.415773 8_1:+31699608 Msa1189630:CDS
TGAGGTGGACTCCATACTTC+AGG 0.420128 8_1:+31697816 Msa1189630:CDS
TTCCCTCTCAAAATCTGTTA+AGG 0.434687 8_1:-31698863 None:intergenic
AGTCTCAAAGCTGGTATTGT+TGG 0.448030 8_1:+31695172 Msa1189630:CDS
AGCCATTGAAAATGTTCATA+TGG 0.459332 8_1:+31694926 Msa1189630:five_prime_UTR
GGTGTTAGTGAAAGTGGTCT+TGG 0.465003 8_1:+31699629 Msa1189630:CDS
ACAGCAACAATCCCTACATT+TGG 0.466715 8_1:-31697381 None:intergenic
TACTGAGATCGGAGAGCACT+TGG 0.466988 8_1:-31697419 None:intergenic
ATGACATTATTCATGTGAAC+GGG 0.475473 8_1:+31698302 Msa1189630:CDS
TGTACAATAGAGCCAAATGT+AGG 0.476002 8_1:+31697369 Msa1189630:CDS
AAGGCATGGACAATACTTGC+AGG 0.478540 8_1:+31700154 Msa1189630:CDS
TCACATGTTTAGGTTGAAAA+CGG 0.480742 8_1:+31697318 Msa1189630:intron
CAATCCATCGACTCCTAGCT+TGG 0.484576 8_1:-31702637 None:intergenic
GTTGCATCTGAGTTGCAGTC+TGG 0.485016 8_1:+31699000 Msa1189630:CDS
TCTCTTGGTGTTAGTGAAAG+TGG 0.487261 8_1:+31699623 Msa1189630:CDS
ATGACTGCACCTCAAGCTGC+TGG 0.490453 8_1:+31700707 Msa1189630:CDS
TCGTTGAGATTTACTGAGAT+CGG 0.494616 8_1:-31697430 None:intergenic
GATATTGCTGGCCTTGTAAA+GGG 0.495696 8_1:+31697480 Msa1189630:CDS
GTTTGTTGCATCAGCTAGAT+CGG 0.502952 8_1:-31698950 None:intergenic
TGATATTGACGTTATCAACT+TGG 0.509555 8_1:+31698342 Msa1189630:CDS
TCTACAAACTCTATGGATGC+TGG 0.511938 8_1:-31697459 None:intergenic
ATTGTTGGTCTTCCTAATGT+TGG 0.520640 8_1:+31695187 Msa1189630:CDS
AGATATTGCTGGCCTTGTAA+AGG 0.526607 8_1:+31697479 Msa1189630:CDS
CATGAAACCCATTATATATG+TGG 0.528753 8_1:+31698912 Msa1189630:CDS
GTGTTAGTGAAAGTGGTCTT+GGG 0.530590 8_1:+31699630 Msa1189630:CDS
AATTGTAACAATTTCAGCGC+AGG 0.536813 8_1:+31699023 Msa1189630:CDS
CTTCAACTGTTACAGGGTCT+CGG 0.538322 8_1:+31697769 Msa1189630:intron
ATTCATTCTGACTTTGAGAA+GGG 0.546250 8_1:+31700734 Msa1189630:CDS
AGAGGCAGAAAAGACTGCAT+TGG 0.546937 8_1:+31698792 Msa1189630:CDS
ATTTGAGGATGCTCCAAGCT+AGG 0.548147 8_1:+31702624 Msa1189630:CDS
CTTGTAAAGGGTGCAAGTCA+AGG 0.552602 8_1:+31697492 Msa1189630:CDS
ATTCGTGTAGCACTCTTGGA+TGG 0.555782 8_1:+31698820 Msa1189630:CDS
TATTCATTCTGACTTTGAGA+AGG 0.556078 8_1:+31700733 Msa1189630:CDS
GATAACGTCAATATCAGACT+TGG 0.564980 8_1:-31698335 None:intergenic
GTACAATAGAGCCAAATGTA+GGG 0.572299 8_1:+31697370 Msa1189630:CDS
ATAAGCATGAGTCTCAAAGC+TGG 0.580496 8_1:+31695163 Msa1189630:CDS
TGATGCTTACCGTCTCTGCT+CGG 0.581066 8_1:-31700763 None:intergenic
GTTAAGGTCACAGATCGTGC+AGG 0.583415 8_1:-31698847 None:intergenic
GACTTACGACGGCATTGAAG+AGG 0.585086 8_1:-31695219 None:intergenic
TTCAAAGGATGAACTAAACT+GGG 0.586595 8_1:-31695049 None:intergenic
GCTTTCTGAACTAGCGCTTG+AGG 0.588528 8_1:+31699580 Msa1189630:CDS
TATATATGTGGCAAATGTTG+CGG 0.590385 8_1:+31698924 Msa1189630:CDS
AATGACATTATTCATGTGAA+CGG 0.591318 8_1:+31698301 Msa1189630:CDS
TTTATCACATATTCGTGAGG+TGG 0.594065 8_1:+31697801 Msa1189630:CDS
TCTCAGTAAATCTCAACGAA+TGG 0.599820 8_1:+31697434 Msa1189630:CDS
AAAGACTACATTGTACAAGA+AGG 0.600557 8_1:+31702455 Msa1189630:CDS
AATGTATCCACAGGAGACAA+AGG 0.607824 8_1:+31700135 Msa1189630:intron
ACTTACGACGGCATTGAAGA+GGG 0.619986 8_1:-31695218 None:intergenic
GGGTTTCATCCGAGCAGAGA+CGG 0.622621 8_1:+31700754 Msa1189630:CDS
TGTTTAGGTTGAAAACGGAA+AGG 0.629927 8_1:+31697323 Msa1189630:intron
ATAACGTCAATATCAGACTT+GGG 0.632121 8_1:-31698334 None:intergenic
TGTTTGCAGTTGCGATCTGA+AGG 0.636055 8_1:+31702431 Msa1189630:intron
TGAATAACTCCAGCAGCTTG+AGG 0.642652 8_1:-31700716 None:intergenic
AAAGGGTGCAAGTCAAGGCG+AGG 0.653560 8_1:+31697497 Msa1189630:CDS
ATCCACAGGAGACAAAGGCA+TGG 0.678907 8_1:+31700140 Msa1189630:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTAGATAATGTTTTA+GGG - chr8_1:31702400-31702419 None:intergenic 10.0%
!!! TAAAATTGATTTTGAACTAA+CGG - chr8_1:31695797-31695816 None:intergenic 15.0%
!! TAAATATAAAGCAACATTAA+AGG - chr8_1:31695930-31695949 None:intergenic 15.0%
!!! ACAAGGTTTTATTTTATTAT+AGG + chr8_1:31696068-31696087 Msa1189630:intron 15.0%
!!! TATATTTTTTTTGAGCTAAA+AGG + chr8_1:31697031-31697050 Msa1189630:intron 15.0%
!!! TGGTTACTTTTAAAAAAATA+AGG + chr8_1:31697121-31697140 Msa1189630:intron 15.0%
!!! AATTTTCTCAAATTATTACT+GGG - chr8_1:31699818-31699837 None:intergenic 15.0%
!! TACAAAAATATTAACTACTA+TGG - chr8_1:31700032-31700051 None:intergenic 15.0%
!!! TAATTTTAGAGATTAAATAC+AGG - chr8_1:31700102-31700121 None:intergenic 15.0%
!! ACAGGTTATTAAATTTAAAT+TGG + chr8_1:31700468-31700487 Msa1189630:intron 15.0%
!! TAATTTAAATCAAAAAAAGG+TGG + chr8_1:31700858-31700877 Msa1189630:intron 15.0%
!! AAATTTAATAGAAGAGTTAT+AGG + chr8_1:31700937-31700956 Msa1189630:intron 15.0%
!!! AAATATAGAATCTTTTGTTT+TGG + chr8_1:31701533-31701552 Msa1189630:intron 15.0%
!!! AATATTCTACATATTTTACA+AGG + chr8_1:31701647-31701666 Msa1189630:intron 15.0%
!!! AATATTTTCTTTTTTGCTTT+TGG - chr8_1:31701726-31701745 None:intergenic 15.0%
!! CAAAAAAGAAAATATTTGTA+GGG + chr8_1:31701730-31701749 Msa1189630:intron 15.0%
!! AAAAAAGAAAATATTTGTAG+GGG + chr8_1:31701731-31701750 Msa1189630:intron 15.0%
!!! GAAAAATGTTATTTTCTATT+AGG + chr8_1:31702273-31702292 Msa1189630:intron 15.0%
!!! GTAAATTTAGATAATGTTTT+AGG - chr8_1:31702401-31702420 None:intergenic 15.0%
!! ATAAAGGTTAAAAGATTGTT+TGG - chr8_1:31695104-31695123 None:intergenic 20.0%
!!! AAACAATCTTTTAACCTTTA+TGG + chr8_1:31695103-31695122 Msa1189630:CDS 20.0%
!! AAAGAAAATATATAGCGTTT+AGG - chr8_1:31695425-31695444 None:intergenic 20.0%
!!! AGAAAATGACTTTTAGATTA+AGG + chr8_1:31695461-31695480 Msa1189630:intron 20.0%
!! CTTCATGTTAAAATCAATTA+TGG - chr8_1:31695640-31695659 None:intergenic 20.0%
!!! TTCAAAATCAATTTTAGTCA+TGG + chr8_1:31695801-31695820 Msa1189630:intron 20.0%
!!! TTTTTCAATTAAGATGATGA+GGG - chr8_1:31695884-31695903 None:intergenic 20.0%
!!! TTTTTTCAATTAAGATGATG+AGG - chr8_1:31695885-31695904 None:intergenic 20.0%
!! AAAATGAACAATCAAACTAA+CGG - chr8_1:31695954-31695973 None:intergenic 20.0%
!!! TATTAAGTGTTGTTAAATAG+AGG + chr8_1:31696323-31696342 Msa1189630:intron 20.0%
!! ATCATTATTGTTCTCTATTA+TGG + chr8_1:31696379-31696398 Msa1189630:intron 20.0%
!!! TTGACACTTACATTTTAAAA+TGG + chr8_1:31696477-31696496 Msa1189630:intron 20.0%
!!! GTTATTTAGTTTTGTTTGTT+AGG + chr8_1:31696588-31696607 Msa1189630:intron 20.0%
!! GAAATGAGATTTGATATTTA+TGG + chr8_1:31696988-31697007 Msa1189630:intron 20.0%
!!! ATTTAATTATTGATTCTAGG+TGG - chr8_1:31697062-31697081 None:intergenic 20.0%
!!! GAGATTTAATTATTGATTCT+AGG - chr8_1:31697065-31697084 None:intergenic 20.0%
!! TATTGTACAAAAAGGAAAAT+TGG - chr8_1:31697358-31697377 None:intergenic 20.0%
!! CTTGATAAGAGTTTATATAA+AGG + chr8_1:31697603-31697622 Msa1189630:intron 20.0%
!! AATCCTCTAGTATATAAAAA+AGG - chr8_1:31697910-31697929 None:intergenic 20.0%
!! AATGATAATAACAGATTCAA+AGG - chr8_1:31698440-31698459 None:intergenic 20.0%
!! ATTATCATTCTAAATGTTTG+TGG + chr8_1:31698451-31698470 Msa1189630:intron 20.0%
!! ATCATGATATATATCATTGA+AGG - chr8_1:31698490-31698509 None:intergenic 20.0%
!! CATGATTGTATTAATTTACT+TGG + chr8_1:31698504-31698523 Msa1189630:intron 20.0%
!! TTAGTTTCACAAATATCATA+TGG + chr8_1:31699376-31699395 Msa1189630:intron 20.0%
!! TAGTTTCACAAATATCATAT+GGG + chr8_1:31699377-31699396 Msa1189630:intron 20.0%
!!! ATTTTCTCAAATTATTACTG+GGG - chr8_1:31699817-31699836 None:intergenic 20.0%
!!! CAATTTTCTCAAATTATTAC+TGG - chr8_1:31699819-31699838 None:intergenic 20.0%
!!! TTCCTTTTTTCTCTTTTTAT+TGG - chr8_1:31700356-31700375 None:intergenic 20.0%
!!! GAATACCATTTTCAAATAAT+TGG + chr8_1:31700429-31700448 Msa1189630:intron 20.0%
!! TATCTCCAATTATTTGAAAA+TGG - chr8_1:31700437-31700456 None:intergenic 20.0%
!! CAATCAAACATACATTAAAA+GGG - chr8_1:31700578-31700597 None:intergenic 20.0%
!! TCGATAATAATGTAAGAATT+TGG + chr8_1:31700641-31700660 Msa1189630:intron 20.0%
!!! TTTTAAGTCTATGTTATACT+AGG + chr8_1:31700683-31700702 Msa1189630:intron 20.0%
!! AAAATATATTGAAAGAAGAG+TGG - chr8_1:31701272-31701291 None:intergenic 20.0%
!!! ACTCTTCTTTCAATATATTT+TGG + chr8_1:31701271-31701290 Msa1189630:intron 20.0%
!! ATGCAATTACTAAAAAGAAA+AGG + chr8_1:31701426-31701445 Msa1189630:intron 20.0%
!! ACACACAAAAAAAAAATACA+AGG - chr8_1:31701501-31701520 None:intergenic 20.0%
!!! CAATATAAATAGTTTTCACA+TGG - chr8_1:31701577-31701596 None:intergenic 20.0%
!! GCAAAAAAGAAAATATTTGT+AGG + chr8_1:31701729-31701748 Msa1189630:intron 20.0%
!!! GAAAATAACATTTTTCATGA+AGG - chr8_1:31702269-31702288 None:intergenic 20.0%
!!! AAATGTTATTTTCTATTAGG+TGG + chr8_1:31702276-31702295 Msa1189630:intron 20.0%
!!! TTTTGTTTGTGATAAATTTG+AGG + chr8_1:31702609-31702628 Msa1189630:CDS 20.0%
! ATTCTTTCTCCTTACAATAA+TGG + chr8_1:31695015-31695034 Msa1189630:exon 25.0%
!! ACGCTATATATTTTCTTTGA+TGG + chr8_1:31695427-31695446 Msa1189630:intron 25.0%
!! CGCTATATATTTTCTTTGAT+GGG + chr8_1:31695428-31695447 Msa1189630:intron 25.0%
! CATGTTAAAATCAATTATGG+AGG - chr8_1:31695637-31695656 None:intergenic 25.0%
!!! TCTAGATTTAATTTTAGCCT+CGG + chr8_1:31695681-31695700 Msa1189630:intron 25.0%
!!! CGGTTTTGTAATATTGATTA+TGG - chr8_1:31695777-31695796 None:intergenic 25.0%
! AAATGAACAATCAAACTAAC+GGG - chr8_1:31695953-31695972 None:intergenic 25.0%
! TCAAAATCATCATACAAACA+AGG - chr8_1:31696145-31696164 None:intergenic 25.0%
! TACAAAATATTGTCCAATAG+TGG + chr8_1:31696409-31696428 Msa1189630:intron 25.0%
! CAATGACTATAAGAAAATAG+TGG - chr8_1:31696460-31696479 None:intergenic 25.0%
! ATTTGCCATTCATATAAACA+GGG - chr8_1:31696504-31696523 None:intergenic 25.0%
! AATTTGCCATTCATATAAAC+AGG - chr8_1:31696505-31696524 None:intergenic 25.0%
! TGTTTATATGAATGGCAAAT+TGG + chr8_1:31696504-31696523 Msa1189630:intron 25.0%
! TTGCATTCAATAGATAATAC+CGG + chr8_1:31696757-31696776 Msa1189630:intron 25.0%
!! GATATTTATGGTTTTTGTCA+CGG + chr8_1:31697000-31697019 Msa1189630:intron 25.0%
! TCAATAATTAAATCTCGTCT+AGG + chr8_1:31697069-31697088 Msa1189630:intron 25.0%
!! ACAAGAGTAATTTTTCTCAA+CGG - chr8_1:31697101-31697120 None:intergenic 25.0%
! TTGAGAAAAATTACTCTTGT+TGG + chr8_1:31697101-31697120 Msa1189630:intron 25.0%
!! TCGATTTCTGTTCTATATTT+TGG + chr8_1:31697213-31697232 Msa1189630:intron 25.0%
! TATTATAGCATTCAGAACAA+GGG - chr8_1:31697261-31697280 None:intergenic 25.0%
! TTATTATAGCATTCAGAACA+AGG - chr8_1:31697262-31697281 None:intergenic 25.0%
! GATAAGAGTTTATATAAAGG+AGG + chr8_1:31697606-31697625 Msa1189630:intron 25.0%
! ATGAAAGTAAACTAATGACA+AGG - chr8_1:31697861-31697880 None:intergenic 25.0%
!!! CTTCCTTTTTTATATACTAG+AGG + chr8_1:31697904-31697923 Msa1189630:intron 25.0%
! ACATATTGCTTAACAAAACT+TGG + chr8_1:31698167-31698186 Msa1189630:intron 25.0%
! TTTCTGATTATAAAATGCCA+TGG + chr8_1:31698237-31698256 Msa1189630:intron 25.0%
! TTCTGATTATAAAATGCCAT+GGG + chr8_1:31698238-31698257 Msa1189630:intron 25.0%
! AATGACATTATTCATGTGAA+CGG + chr8_1:31698301-31698320 Msa1189630:CDS 25.0%
!! TTCATTGTGAAGAATACTTT+TGG + chr8_1:31698556-31698575 Msa1189630:intron 25.0%
!! TCATTGTGAAGAATACTTTT+GGG + chr8_1:31698557-31698576 Msa1189630:intron 25.0%
! AGACTGGATAAACTAAAAAA+AGG + chr8_1:31698650-31698669 Msa1189630:intron 25.0%
! AAATATCAAGAAGCAATGAT+GGG - chr8_1:31698730-31698749 None:intergenic 25.0%
! ACATTTGCCACATATATAAT+GGG - chr8_1:31698922-31698941 None:intergenic 25.0%
! AACATTTGCCACATATATAA+TGG - chr8_1:31698923-31698942 None:intergenic 25.0%
! AACAAACAATGATTACGTTA+TGG + chr8_1:31698966-31698985 Msa1189630:CDS 25.0%
! ACAAACAATGATTACGTTAT+GGG + chr8_1:31698967-31698986 Msa1189630:CDS 25.0%
! AAGAAAAAGAATATTCCAGA+GGG - chr8_1:31699161-31699180 None:intergenic 25.0%
! AAATTAACAGTGACTTGAAA+TGG - chr8_1:31699274-31699293 None:intergenic 25.0%
! ACCATTTAAAAATACCAAGA+TGG - chr8_1:31699323-31699342 None:intergenic 25.0%
!! CAAGAATATTTGAAATCTCT+TGG + chr8_1:31699608-31699627 Msa1189630:CDS 25.0%
! CGGTGATAAATATTGTTATA+TGG + chr8_1:31699980-31699999 Msa1189630:intron 25.0%
!!! GAACACTTATTTTACTAGTT+AGG - chr8_1:31700055-31700074 None:intergenic 25.0%
! AAATACAGGAGTTAAAAACT+AGG - chr8_1:31700088-31700107 None:intergenic 25.0%
! ATATCATTTCTCTTCAGAAA+AGG - chr8_1:31700230-31700249 None:intergenic 25.0%
! TATTGGACAAAAACAATAGA+GGG - chr8_1:31700339-31700358 None:intergenic 25.0%
! TTATTGGACAAAAACAATAG+AGG - chr8_1:31700340-31700359 None:intergenic 25.0%
! GTCCAATAAAAAGAGAAAAA+AGG + chr8_1:31700351-31700370 Msa1189630:intron 25.0%
! GGAGATATTGATATTTAAAC+AGG + chr8_1:31700450-31700469 Msa1189630:intron 25.0%
! TTTGTCAACAAAAGGAAAAA+CGG - chr8_1:31700531-31700550 None:intergenic 25.0%
!! TTTTTCCTTTTGTTGACAAA+TGG + chr8_1:31700531-31700550 Msa1189630:intron 25.0%
! GCAATCAAACATACATTAAA+AGG - chr8_1:31700579-31700598 None:intergenic 25.0%
!!! TTCAATATTCTAGAATATGC+AGG + chr8_1:31700895-31700914 Msa1189630:intron 25.0%
!!! TCAATATTCTAGAATATGCA+GGG + chr8_1:31700896-31700915 Msa1189630:intron 25.0%
! AGCAAAATCTATAATAAGGA+AGG - chr8_1:31701203-31701222 None:intergenic 25.0%
! GGTTAGCAAAATCTATAATA+AGG - chr8_1:31701207-31701226 None:intergenic 25.0%
! AAGAGTGGTATACAAAAAAA+CGG - chr8_1:31701257-31701276 None:intergenic 25.0%
! AAAACGTTTGATATTTGCAA+GGG - chr8_1:31701469-31701488 None:intergenic 25.0%
! CAAAAGATTCTATATTTGCA+AGG - chr8_1:31701530-31701549 None:intergenic 25.0%
!!! AATCTTTTGTTTTGGTCTTT+GGG + chr8_1:31701541-31701560 Msa1189630:intron 25.0%
!!! TTATTTTTGTCCTTACTTTG+AGG + chr8_1:31701613-31701632 Msa1189630:intron 25.0%
!!! TATTTTTGTCCTTACTTTGA+GGG + chr8_1:31701614-31701633 Msa1189630:intron 25.0%
!! CTTGCAAAATTGATTCATAT+TGG - chr8_1:31701680-31701699 None:intergenic 25.0%
!! CAATATGAATCAATTTTGCA+AGG + chr8_1:31701678-31701697 Msa1189630:intron 25.0%
! AGCTTCTAATTTAGAAAAGA+AGG + chr8_1:31701848-31701867 Msa1189630:intron 25.0%
!!! TAGGAAATTTTAGTATTGTC+TGG + chr8_1:31702007-31702026 Msa1189630:intron 25.0%
! GAAATATCAATGAAATGAGA+GGG - chr8_1:31702378-31702397 None:intergenic 25.0%
! TATAATTTATGACCAAGATC+AGG + chr8_1:31702549-31702568 Msa1189630:intron 25.0%
! ATGAACATTTTCAATGGCTA+CGG - chr8_1:31694925-31694944 None:intergenic 30.0%
AGCCATTGAAAATGTTCATA+TGG + chr8_1:31694926-31694945 Msa1189630:five_prime_UTR 30.0%
! CACCATATGAACATTTTCAA+TGG - chr8_1:31694931-31694950 None:intergenic 30.0%
!!! CTAGTTTTGCCATTATTGTA+AGG - chr8_1:31695027-31695046 None:intergenic 30.0%
TTCAAAGGATGAACTAAACT+GGG - chr8_1:31695052-31695071 None:intergenic 30.0%
TTTCAAAGGATGAACTAAAC+TGG - chr8_1:31695053-31695072 None:intergenic 30.0%
!! TAGTTCATCCTTTGAAATCA+AGG + chr8_1:31695056-31695075 Msa1189630:CDS 30.0%
!!! CCTTTGAAATCAAGGTTTTT+CGG + chr8_1:31695064-31695083 Msa1189630:CDS 30.0%
GAAGAAGAATATGAAAGCTT+TGG - chr8_1:31695136-31695155 None:intergenic 30.0%
GGGTCATGTAAATGAAAAAA+GGG - chr8_1:31695252-31695271 None:intergenic 30.0%
TAGATTGAACAATAAATCCG+AGG - chr8_1:31695701-31695720 None:intergenic 30.0%
TCACAAAGTAGAGCTTATAT+AGG + chr8_1:31695835-31695854 Msa1189630:intron 30.0%
CACAAAGTAGAGCTTATATA+GGG + chr8_1:31695836-31695855 Msa1189630:intron 30.0%
! ATATCAACTAGCTTATGACA+AGG + chr8_1:31696051-31696070 Msa1189630:intron 30.0%
AAAATTGAAGCGTGAATTCT+AGG + chr8_1:31696178-31696197 Msa1189630:intron 30.0%
AAATTGAAGCGTGAATTCTA+GGG + chr8_1:31696179-31696198 Msa1189630:intron 30.0%
ATTACTACTATTGCCACTAT+TGG - chr8_1:31696425-31696444 None:intergenic 30.0%
CGTTAGGACTTTGAATAAAT+TGG + chr8_1:31696532-31696551 Msa1189630:intron 30.0%
!! TTTTTGTTGCTTCTATGCTA+AGG + chr8_1:31696624-31696643 Msa1189630:intron 30.0%
!! TTTTGTTGCTTCTATGCTAA+GGG + chr8_1:31696625-31696644 Msa1189630:intron 30.0%
! GTATTGTAGTCTTAACTCTT+AGG - chr8_1:31696813-31696832 None:intergenic 30.0%
AGGCATATGAATTTATTGCA+AGG - chr8_1:31697167-31697186 None:intergenic 30.0%
TGCAATAAATTCATATGCCT+TGG + chr8_1:31697167-31697186 Msa1189630:intron 30.0%
TTACTTTCTTTATTGCACCA+AGG - chr8_1:31697187-31697206 None:intergenic 30.0%
AATAGTGATCTCACATGTTT+AGG + chr8_1:31697308-31697327 Msa1189630:intron 30.0%
!! TCACATGTTTAGGTTGAAAA+CGG + chr8_1:31697318-31697337 Msa1189630:intron 30.0%
!! TTTGGCTCTATTGTACAAAA+AGG - chr8_1:31697366-31697385 None:intergenic 30.0%
AGCAATATCTACAAACTCTA+TGG - chr8_1:31697469-31697488 None:intergenic 30.0%
ATAGAGTTTGTAGATATTGC+TGG + chr8_1:31697468-31697487 Msa1189630:CDS 30.0%
! TGTTTTGTGTCAACTGATAT+TGG + chr8_1:31697545-31697564 Msa1189630:intron 30.0%
! GTTTTGTGTCAACTGATATT+GGG + chr8_1:31697546-31697565 Msa1189630:intron 30.0%
AGTGTCAGTTGTTGAAATTT+GGG - chr8_1:31697675-31697694 None:intergenic 30.0%
AAGTGTCAGTTGTTGAAATT+TGG - chr8_1:31697676-31697695 None:intergenic 30.0%
TATCTTACTTCAACTGTTAC+AGG + chr8_1:31697762-31697781 Msa1189630:intron 30.0%
ATCTTACTTCAACTGTTACA+GGG + chr8_1:31697763-31697782 Msa1189630:intron 30.0%
! GTTTTTATCACATATTCGTG+AGG + chr8_1:31697798-31697817 Msa1189630:CDS 30.0%
ATAGATAAACACCTGAAGTA+TGG - chr8_1:31697830-31697849 None:intergenic 30.0%
TTATATACTAGAGGATTGTC+TGG + chr8_1:31697913-31697932 Msa1189630:intron 30.0%
ATGACATTATTCATGTGAAC+GGG + chr8_1:31698302-31698321 Msa1189630:CDS 30.0%
ATAACGTCAATATCAGACTT+GGG - chr8_1:31698337-31698356 None:intergenic 30.0%
TGATATTGACGTTATCAACT+TGG + chr8_1:31698342-31698361 Msa1189630:CDS 30.0%
AACAGATTCAAAGGATATGA+AGG - chr8_1:31698431-31698450 None:intergenic 30.0%
ATTCTTCACAATGAAGAGAA+AGG - chr8_1:31698551-31698570 None:intergenic 30.0%
ACTAAAAAAAGGCAAGACAA+AGG + chr8_1:31698661-31698680 Msa1189630:intron 30.0%
CAAATATCAAGAAGCAATGA+TGG - chr8_1:31698731-31698750 None:intergenic 30.0%
CATTGCTTCTTGATATTTGT+TGG + chr8_1:31698732-31698751 Msa1189630:intron 30.0%
ACAAACAAAATCAAGTCACA+TGG - chr8_1:31698768-31698787 None:intergenic 30.0%
!! TGTGACTTGATTTTGTTTGT+AGG + chr8_1:31698768-31698787 Msa1189630:intron 30.0%
!! TTGATTTTGTTTGTAGGAAG+AGG + chr8_1:31698774-31698793 Msa1189630:intron 30.0%
!! CACATATATAATGGGTTTCA+TGG - chr8_1:31698914-31698933 None:intergenic 30.0%
CATGAAACCCATTATATATG+TGG + chr8_1:31698912-31698931 Msa1189630:CDS 30.0%
TATATATGTGGCAAATGTTG+CGG + chr8_1:31698924-31698943 Msa1189630:CDS 30.0%
!!! TCTGTTTTCTAGTTACACTT+GGG + chr8_1:31699110-31699129 Msa1189630:intron 30.0%
GAAGAAAAAGAATATTCCAG+AGG - chr8_1:31699162-31699181 None:intergenic 30.0%
AAATCTAGACAATGGATCAA+AGG - chr8_1:31699207-31699226 None:intergenic 30.0%
TTTATCTAACACTGATACAC+AGG - chr8_1:31699232-31699251 None:intergenic 30.0%
TTAAAAATACCAAGATGGCT+AGG - chr8_1:31699318-31699337 None:intergenic 30.0%
!! GCCATCTTGGTATTTTTAAA+TGG + chr8_1:31699319-31699338 Msa1189630:intron 30.0%
! ACTTTCCATGAATTTTCTGT+AGG + chr8_1:31699408-31699427 Msa1189630:intron 30.0%
! CTTTCCATGAATTTTCTGTA+GGG + chr8_1:31699409-31699428 Msa1189630:intron 30.0%
AATTCCCTACAGAAAATTCA+TGG - chr8_1:31699416-31699435 None:intergenic 30.0%
ATGTGTTTATTTGTCTATGC+AGG + chr8_1:31699547-31699566 Msa1189630:intron 30.0%
GATCATATGTTGCTCTAATT+AGG - chr8_1:31699658-31699677 None:intergenic 30.0%
! TAGAGCAACATATGATCTTT+TGG + chr8_1:31699661-31699680 Msa1189630:CDS 30.0%
! AGAGCAACATATGATCTTTT+GGG + chr8_1:31699662-31699681 Msa1189630:CDS 30.0%
! TATCCTGTTTTATAAAGCAC+TGG + chr8_1:31699762-31699781 Msa1189630:intron 30.0%
ACCGTATACATGTTTAACAT+GGG - chr8_1:31699964-31699983 None:intergenic 30.0%
CTATGGAATAACTAATCAAG+AGG - chr8_1:31700015-31700034 None:intergenic 30.0%
TTAAAAACTAGGATGTCTTG+GGG - chr8_1:31700077-31700096 None:intergenic 30.0%
GTTAAAAACTAGGATGTCTT+GGG - chr8_1:31700078-31700097 None:intergenic 30.0%
AGTTAAAAACTAGGATGTCT+TGG - chr8_1:31700079-31700098 None:intergenic 30.0%
! TGTTTTTCTAATGTATCCAC+AGG + chr8_1:31700126-31700145 Msa1189630:intron 30.0%
GTCACAAAAGTTGTCTTAAT+TGG + chr8_1:31700380-31700399 Msa1189630:intron 30.0%
ATATCAAGACCAAAGGATAA+AGG - chr8_1:31700499-31700518 None:intergenic 30.0%
GGACTACTTCATTAAAAAAG+GGG - chr8_1:31700601-31700620 None:intergenic 30.0%
CGGACTACTTCATTAAAAAA+GGG - chr8_1:31700602-31700621 None:intergenic 30.0%
TCGGACTACTTCATTAAAAA+AGG - chr8_1:31700603-31700622 None:intergenic 30.0%
ATTCTGTTTGATCAATCAGT+CGG - chr8_1:31700622-31700641 None:intergenic 30.0%
! TATTCATTCTGACTTTGAGA+AGG + chr8_1:31700733-31700752 Msa1189630:CDS 30.0%
! ATTCATTCTGACTTTGAGAA+GGG + chr8_1:31700734-31700753 Msa1189630:CDS 30.0%
! AAAAAAGGTGGAAGTGATTT+TGG + chr8_1:31700870-31700889 Msa1189630:intron 30.0%
!! CAATATTCTAGAATATGCAG+GGG + chr8_1:31700897-31700916 Msa1189630:intron 30.0%
AATGCAATGCGTTTATTCAA+AGG - chr8_1:31701032-31701051 None:intergenic 30.0%
TAATCTCTCAAGTACATCTT+AGG + chr8_1:31701099-31701118 Msa1189630:intron 30.0%
AATCCTCTCTAATCTCAATT+GGG - chr8_1:31701161-31701180 None:intergenic 30.0%
AAATCCTCTCTAATCTCAAT+TGG - chr8_1:31701162-31701181 None:intergenic 30.0%
! ATTTTGCTAACCTTACTTTG+AGG + chr8_1:31701215-31701234 Msa1189630:intron 30.0%
! TTTTGCTAACCTTACTTTGA+GGG + chr8_1:31701216-31701235 Msa1189630:intron 30.0%
AGAGTGGTATACAAAAAAAC+GGG - chr8_1:31701256-31701275 None:intergenic 30.0%
! TTTTTAAACTGATGAGTCCA+AGG - chr8_1:31701307-31701326 None:intergenic 30.0%
AAAAAACAAGTAGCGTTGTA+CGG + chr8_1:31701331-31701350 Msa1189630:intron 30.0%
! CAATTTTGCAAACATGAGAT+TGG + chr8_1:31701396-31701415 Msa1189630:intron 30.0%
CAAAACGTTTGATATTTGCA+AGG - chr8_1:31701470-31701489 None:intergenic 30.0%
! CTTGCAAATATCAAACGTTT+TGG + chr8_1:31701468-31701487 Msa1189630:intron 30.0%
!!! GAATCTTTTGTTTTGGTCTT+TGG + chr8_1:31701540-31701559 Msa1189630:intron 30.0%
!! AATTTTAGTCCCTCAAAGTA+AGG - chr8_1:31701626-31701645 None:intergenic 30.0%
GGACTAAAACAAAAACAAGA+AGG + chr8_1:31701699-31701718 Msa1189630:intron 30.0%
CTTTGAACTGAATACATGAT+AGG + chr8_1:31701988-31702007 Msa1189630:intron 30.0%
TTTATCCAACTAAGTAGAGA+CGG - chr8_1:31702042-31702061 None:intergenic 30.0%
TAATAAACAACGACAGTTCT+AGG - chr8_1:31702097-31702116 None:intergenic 30.0%
GGAAATATCAATGAAATGAG+AGG - chr8_1:31702379-31702398 None:intergenic 30.0%
AAAGACTACATTGTACAAGA+AGG + chr8_1:31702455-31702474 Msa1189630:CDS 30.0%
! ATGCTTTTATAACGAGCAAT+TGG - chr8_1:31702586-31702605 None:intergenic 30.0%
CCGAAAAACCTTGATTTCAA+AGG - chr8_1:31695067-31695086 None:intergenic 35.0%
!! ATTGTTGGTCTTCCTAATGT+TGG + chr8_1:31695187-31695206 Msa1189630:CDS 35.0%
CGGGTCATGTAAATGAAAAA+AGG - chr8_1:31695253-31695272 None:intergenic 35.0%
TAAGCTCTACTTTGTGAGTT+TGG - chr8_1:31695832-31695851 None:intergenic 35.0%
ATGATGAGGGTAAAAATGAG+AGG - chr8_1:31695871-31695890 None:intergenic 35.0%
AATCCTAAGAATCGAACACT+AGG + chr8_1:31696213-31696232 Msa1189630:intron 35.0%
ATTGAGAGAACGACTAATTC+CGG + chr8_1:31696267-31696286 Msa1189630:intron 35.0%
ATGGTCCCTGTTTATATGAA+TGG + chr8_1:31696496-31696515 Msa1189630:intron 35.0%
! CAACTGACTTAACTAGTTAC+TGG - chr8_1:31696569-31696588 None:intergenic 35.0%
! TTTGTTGCTTCTATGCTAAG+GGG + chr8_1:31696626-31696645 Msa1189630:intron 35.0%
TAGGAGTTAGAACATCTTTC+CGG - chr8_1:31696779-31696798 None:intergenic 35.0%
!! TGTTTAGGTTGAAAACGGAA+AGG + chr8_1:31697323-31697342 Msa1189630:intron 35.0%
TGTACAATAGAGCCAAATGT+AGG + chr8_1:31697369-31697388 Msa1189630:CDS 35.0%
GTACAATAGAGCCAAATGTA+GGG + chr8_1:31697370-31697389 Msa1189630:CDS 35.0%
TCGTTGAGATTTACTGAGAT+CGG - chr8_1:31697433-31697452 None:intergenic 35.0%
TCTCAGTAAATCTCAACGAA+TGG + chr8_1:31697434-31697453 Msa1189630:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr8_1:31697650-31697669 None:intergenic 35.0%
GTGTCAGTTGTTGAAATTTG+GGG - chr8_1:31697674-31697693 None:intergenic 35.0%
TTTATCACATATTCGTGAGG+TGG + chr8_1:31697801-31697820 Msa1189630:CDS 35.0%
! TAAGCACTTGTGAGTTTGTT+TGG + chr8_1:31697965-31697984 Msa1189630:intron 35.0%
! AAGCACTTGTGAGTTTGTTT+GGG + chr8_1:31697966-31697985 Msa1189630:intron 35.0%
! AGTTTGTTTGGGAGATCTTA+CGG + chr8_1:31697977-31697996 Msa1189630:intron 35.0%
!! GCTGTTTTCATAAGCTAATC+TGG - chr8_1:31698027-31698046 None:intergenic 35.0%
TGCATATCTACTACTGATCT+AGG - chr8_1:31698148-31698167 None:intergenic 35.0%
GCTTAACAAAACTTGGAGTT+TGG + chr8_1:31698174-31698193 Msa1189630:intron 35.0%
TCAAAACATCGTACAACCTA+AGG - chr8_1:31698277-31698296 None:intergenic 35.0%
GATAACGTCAATATCAGACT+TGG - chr8_1:31698338-31698357 None:intergenic 35.0%
AATGCAGATTGAGAAAAGAC+TGG + chr8_1:31698634-31698653 Msa1189630:intron 35.0%
! GGATTCACAATCTAAAGTCA+AGG + chr8_1:31698682-31698701 Msa1189630:intron 35.0%
AAAAATTCGTGTAGCACTCT+TGG + chr8_1:31698816-31698835 Msa1189630:CDS 35.0%
! TGACCTTAACAGATTTTGAG+AGG + chr8_1:31698860-31698879 Msa1189630:CDS 35.0%
!! GACCTTAACAGATTTTGAGA+GGG + chr8_1:31698861-31698880 Msa1189630:CDS 35.0%
TTCCCTCTCAAAATCTGTTA+AGG - chr8_1:31698866-31698885 None:intergenic 35.0%
AATTGTAACAATTTCAGCGC+AGG + chr8_1:31699023-31699042 Msa1189630:CDS 35.0%
!!! GTCTGTTTTCTAGTTACACT+TGG + chr8_1:31699109-31699128 Msa1189630:intron 35.0%
!!! CTGTTTTCTAGTTACACTTG+GGG + chr8_1:31699111-31699130 Msa1189630:intron 35.0%
AGTGACTTGAAATGGAACTA+TGG - chr8_1:31699266-31699285 None:intergenic 35.0%
TTATTTGTCTATGCAGGTTG+AGG + chr8_1:31699553-31699572 Msa1189630:intron 35.0%
! GAGCAACATATGATCTTTTG+GGG + chr8_1:31699663-31699682 Msa1189630:CDS 35.0%
!!! CTGCGAACTTATTTTACTTC+CGG + chr8_1:31699686-31699705 Msa1189630:CDS 35.0%
!! TTATTTTACTTCCGGTGAGA+AGG + chr8_1:31699694-31699713 Msa1189630:CDS 35.0%
! ATTTTCTCTTACCTTCTCAC+CGG - chr8_1:31699708-31699727 None:intergenic 35.0%
TAAGTTATAACCACATGCGT+CGG + chr8_1:31699851-31699870 Msa1189630:intron 35.0%
! TTAACATGGGCTATCTAACA+AGG - chr8_1:31699951-31699970 None:intergenic 35.0%
GCCCATGTTAAACATGTATA+CGG + chr8_1:31699960-31699979 Msa1189630:intron 35.0%
CACCGTATACATGTTTAACA+TGG - chr8_1:31699965-31699984 None:intergenic 35.0%
TTGGAGTTTCCTTTATCCTT+TGG + chr8_1:31700487-31700506 Msa1189630:intron 35.0%
TTCAGAGATATCAAGACCAA+AGG - chr8_1:31700506-31700525 None:intergenic 35.0%
CAGAACCATTTGTCAACAAA+AGG - chr8_1:31700539-31700558 None:intergenic 35.0%
! CTTTTGTTGACAAATGGTTC+TGG + chr8_1:31700537-31700556 Msa1189630:intron 35.0%
AATAGTGCATGACTTTGCAT+AGG + chr8_1:31700824-31700843 Msa1189630:intron 35.0%
TCACCAAGTGAAAATAGACA+GGG - chr8_1:31701130-31701149 None:intergenic 35.0%
ATCACCAAGTGAAAATAGAC+AGG - chr8_1:31701131-31701150 None:intergenic 35.0%
ATCCTCTCTAATCTCAATTG+GGG - chr8_1:31701160-31701179 None:intergenic 35.0%
GAGAGGATTTAGTCAAGAAT+AGG + chr8_1:31701172-31701191 Msa1189630:intron 35.0%
GATTTAGTCAAGAATAGGCT+AGG + chr8_1:31701177-31701196 Msa1189630:intron 35.0%
AGTGGTATACAAAAAAACGG+GGG - chr8_1:31701254-31701273 None:intergenic 35.0%
GAGTGGTATACAAAAAAACG+GGG - chr8_1:31701255-31701274 None:intergenic 35.0%
AAAAACAAGTAGCGTTGTAC+GGG + chr8_1:31701332-31701351 Msa1189630:intron 35.0%
AGAAGGTAGAATTTCGTCTT+AGG + chr8_1:31701865-31701884 Msa1189630:intron 35.0%
CTTGGTCTAACTCTAACTAT+TGG - chr8_1:31701925-31701944 None:intergenic 35.0%
GTTAGAGTTAGACCAAGAAA+AGG + chr8_1:31701928-31701947 Msa1189630:intron 35.0%
! GTTAGACCAAGAAAAGGTAT+AGG + chr8_1:31701934-31701953 Msa1189630:intron 35.0%
TTCACTTCCATTTCTCTCAA+TGG - chr8_1:31701960-31701979 None:intergenic 35.0%
TTGAGAGAAATGGAAGTGAA+CGG + chr8_1:31701960-31701979 Msa1189630:intron 35.0%
CTACTTAGTTGGATAAAGCT+TGG + chr8_1:31702045-31702064 Msa1189630:intron 35.0%
AATCATTCTGACTCATGTAC+TGG + chr8_1:31702116-31702135 Msa1189630:intron 35.0%
ATCATTCTGACTCATGTACT+GGG + chr8_1:31702117-31702136 Msa1189630:intron 35.0%
CAACTGCAAACAACATATCT+AGG - chr8_1:31702423-31702442 None:intergenic 35.0%
! GCTGAAAATTTTCCTGATCT+TGG - chr8_1:31702564-31702583 None:intergenic 35.0%
GCTTTGGTTGAACTCCATAA+AGG - chr8_1:31695120-31695139 None:intergenic 40.0%
ATAAGCATGAGTCTCAAAGC+TGG + chr8_1:31695163-31695182 Msa1189630:CDS 40.0%
AGTCTCAAAGCTGGTATTGT+TGG + chr8_1:31695172-31695191 Msa1189630:CDS 40.0%
AGGGTAGATTTGCCAACATT+AGG - chr8_1:31695202-31695221 None:intergenic 40.0%
TACTTAAACACCGAAACACG+TGG - chr8_1:31695397-31695416 None:intergenic 40.0%
TACGCTATAAACTAGCGCTT+CGG - chr8_1:31695502-31695521 None:intergenic 40.0%
! CTGTGATCGAGTCTTTTTGA+TGG + chr8_1:31696097-31696116 Msa1189630:intron 40.0%
TACAAACAAGGACAGCTCAT+TGG - chr8_1:31696133-31696152 None:intergenic 40.0%
GTTCCTAGTGTTCGATTCTT+AGG - chr8_1:31696219-31696238 None:intergenic 40.0%
TGATTATCGCTCAGTATAGC+CGG - chr8_1:31696289-31696308 None:intergenic 40.0%
TCCACCACTGTATAACTCTA+CGG - chr8_1:31696349-31696368 None:intergenic 40.0%
TTTCACACTAGAGACTTCTC+TGG - chr8_1:31696684-31696703 None:intergenic 40.0%
AGAGAAGTCTCTAGTGTGAA+AGG + chr8_1:31696683-31696702 Msa1189630:intron 40.0%
TCTAGTGTGAAAGGTCTTCT+GGG + chr8_1:31696692-31696711 Msa1189630:intron 40.0%
! AAGAAGATAACTTGCACGCA+AGG - chr8_1:31696722-31696741 None:intergenic 40.0%
CTCTTAGGTAACATCGTGTT+AGG - chr8_1:31696798-31696817 None:intergenic 40.0%
GAAATTGTGTCTTCAAGCAG+TGG - chr8_1:31696842-31696861 None:intergenic 40.0%
TGTACTTTGTGTTGAGCTAC+TGG + chr8_1:31696920-31696939 Msa1189630:intron 40.0%
! GAAGTTAGCTGCTGATTACT+AGG + chr8_1:31696951-31696970 Msa1189630:intron 40.0%
ACAGCAACAATCCCTACATT+TGG - chr8_1:31697384-31697403 None:intergenic 40.0%
TCTACAAACTCTATGGATGC+TGG - chr8_1:31697462-31697481 None:intergenic 40.0%
!! AGATATTGCTGGCCTTGTAA+AGG + chr8_1:31697479-31697498 Msa1189630:CDS 40.0%
!! GATATTGCTGGCCTTGTAAA+GGG + chr8_1:31697480-31697499 Msa1189630:CDS 40.0%
! GAGTCTTATCTATCCGATGT+GGG - chr8_1:31697584-31697603 None:intergenic 40.0%
! AGAGTCTTATCTATCCGATG+TGG - chr8_1:31697585-31697604 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr8_1:31697648-31697667 Msa1189630:intron 40.0%
AAGCTAATCTGGAGAGCTTA+TGG - chr8_1:31698016-31698035 None:intergenic 40.0%
!! CTACTGATCTAGGCTTTGTT+TGG - chr8_1:31698138-31698157 None:intergenic 40.0%
AGGTAATAATCATCGACCCA+TGG - chr8_1:31698257-31698276 None:intergenic 40.0%
GGGTCGATGATTATTACCTT+AGG + chr8_1:31698258-31698277 Msa1189630:intron 40.0%
! TGTTTTCACAGACTTAGACC+AGG + chr8_1:31698369-31698388 Msa1189630:CDS 40.0%
AATCTGCATTTCTTCGAACG+AGG - chr8_1:31698624-31698643 None:intergenic 40.0%
! GTTTGTTGCATCAGCTAGAT+CGG - chr8_1:31698953-31698972 None:intergenic 40.0%
! TTCTAGTTACACTTGGGGTT+AGG + chr8_1:31699116-31699135 Msa1189630:intron 40.0%
TCTAGTTACACTTGGGGTTA+GGG + chr8_1:31699117-31699136 Msa1189630:intron 40.0%
! GTTAGGGGTATACTTACATG+TGG + chr8_1:31699133-31699152 Msa1189630:intron 40.0%
CACAGGTCAAATCTAGACAA+TGG - chr8_1:31699215-31699234 None:intergenic 40.0%
ACATCTTACTCGATTCTCTG+TGG - chr8_1:31699531-31699550 None:intergenic 40.0%
!! TCTCTTGGTGTTAGTGAAAG+TGG + chr8_1:31699623-31699642 Msa1189630:CDS 40.0%
GTGTTAGTGAAAGTGGTCTT+GGG + chr8_1:31699630-31699649 Msa1189630:CDS 40.0%
GTGCCAGTGCTTTATAAAAC+AGG - chr8_1:31699768-31699787 None:intergenic 40.0%
ACAAGGAGACTTCACATTGA+AGG - chr8_1:31699934-31699953 None:intergenic 40.0%
AATGTATCCACAGGAGACAA+AGG + chr8_1:31700135-31700154 Msa1189630:intron 40.0%
AACAATAGAGGGAGAGAGAA+AGG - chr8_1:31700328-31700347 None:intergenic 40.0%
TACTGAAAACCAGATTGTCC+TGG - chr8_1:31701006-31701025 None:intergenic 40.0%
! TGTCCCTGTCTATTTTCACT+TGG + chr8_1:31701124-31701143 Msa1189630:intron 40.0%
GTGGTATACAAAAAAACGGG+GGG - chr8_1:31701253-31701272 None:intergenic 40.0%
! ATTTTGGATGTAGTCCTCCT+TGG + chr8_1:31701287-31701306 Msa1189630:intron 40.0%
TTAAACTGATGAGTCCAAGG+AGG - chr8_1:31701304-31701323 None:intergenic 40.0%
AAAACAAGTAGCGTTGTACG+GGG + chr8_1:31701333-31701352 Msa1189630:intron 40.0%
CAGTGAAGAACTAACAGGAA+AGG + chr8_1:31701368-31701387 Msa1189630:intron 40.0%
!!! TTTTGGTCTTTGGGACGTTT+TGG + chr8_1:31701550-31701569 Msa1189630:intron 40.0%
AGGTAGAATTTCGTCTTAGG+TGG + chr8_1:31701868-31701887 Msa1189630:intron 40.0%
! CAATGGCCTATACCTTTTCT+TGG - chr8_1:31701943-31701962 None:intergenic 40.0%
GTATAGGCCATTGAGAGAAA+TGG + chr8_1:31701950-31701969 Msa1189630:intron 40.0%
!! ACGACAGTTCTAGGATTAGT+AGG - chr8_1:31702088-31702107 None:intergenic 40.0%
AATATGCAAGCCAGTCTTGA+TGG + chr8_1:31702148-31702167 Msa1189630:intron 40.0%
!! AAGCCAGTCTTGATGGATTT+GGG + chr8_1:31702155-31702174 Msa1189630:intron 40.0%
TTTCCCAAATCCATCAAGAC+TGG - chr8_1:31702161-31702180 None:intergenic 40.0%
TACAATGACTTTGTTGCTGC+TGG + chr8_1:31702301-31702320 Msa1189630:CDS 40.0%
ATAAACTTACCACTCCCAGA+TGG + chr8_1:31702505-31702524 Msa1189630:intron 40.0%
TAAACTTACCACTCCCAGAT+GGG + chr8_1:31702506-31702525 Msa1189630:intron 40.0%
!! ATTTCCACTGATTCCCATCT+GGG - chr8_1:31702522-31702541 None:intergenic 40.0%
! ACTTACGACGGCATTGAAGA+GGG - chr8_1:31695221-31695240 None:intergenic 45.0%
!! ATCAGAAGTGTCAGTGCTAC+GGG - chr8_1:31695272-31695291 None:intergenic 45.0%
!! GATCAGAAGTGTCAGTGCTA+CGG - chr8_1:31695273-31695292 None:intergenic 45.0%
ATGTCTGACACAGACACTTG+CGG + chr8_1:31695313-31695332 Msa1189630:intron 45.0%
GTGTTAGTGTCCACGTGTTT+CGG + chr8_1:31695384-31695403 Msa1189630:intron 45.0%
TTGCTTCTATGCTAAGGGGA+AGG + chr8_1:31696630-31696649 Msa1189630:intron 45.0%
TGCTTCTATGCTAAGGGGAA+GGG + chr8_1:31696631-31696650 Msa1189630:intron 45.0%
CTCTAGTGTGAAAGGTCTTC+TGG + chr8_1:31696691-31696710 Msa1189630:intron 45.0%
CTAGTGTGAAAGGTCTTCTG+GGG + chr8_1:31696693-31696712 Msa1189630:intron 45.0%
!! CTTGACTTGCACCCTTTACA+AGG - chr8_1:31697494-31697513 None:intergenic 45.0%
! CTTGTAAAGGGTGCAAGTCA+AGG + chr8_1:31697492-31697511 Msa1189630:CDS 45.0%
GAAAAACCCAAGTCCCACAT+CGG + chr8_1:31697568-31697587 Msa1189630:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG - chr8_1:31697577-31697596 None:intergenic 45.0%
TATCTATCCGATGTGGGACT+TGG - chr8_1:31697578-31697597 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr8_1:31697641-31697660 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr8_1:31697638-31697657 Msa1189630:intron 45.0%
CTTCAACTGTTACAGGGTCT+CGG + chr8_1:31697769-31697788 Msa1189630:intron 45.0%
TGACAGTTAGTAAGCTGACC+TGG - chr8_1:31698390-31698409 None:intergenic 45.0%
AGAGGCAGAAAAGACTGCAT+TGG + chr8_1:31698792-31698811 Msa1189630:CDS 45.0%
ATTCGTGTAGCACTCTTGGA+TGG + chr8_1:31698820-31698839 Msa1189630:CDS 45.0%
! CGCAGGTATACAGCTTTGAT+AGG + chr8_1:31699040-31699059 Msa1189630:intron 45.0%
CTAGTTACACTTGGGGTTAG+GGG + chr8_1:31699118-31699137 Msa1189630:intron 45.0%
!!! AGTCGAGGTTTTTTGCAAGG+AGG - chr8_1:31699184-31699203 None:intergenic 45.0%
!!! AGGAGTCGAGGTTTTTTGCA+AGG - chr8_1:31699187-31699206 None:intergenic 45.0%
ACAATGGATCAAAGGAGTCG+AGG - chr8_1:31699199-31699218 None:intergenic 45.0%
ATACCAAGATGGCTAGGACT+AGG - chr8_1:31699312-31699331 None:intergenic 45.0%
GGTGTTAGTGAAAGTGGTCT+TGG + chr8_1:31699629-31699648 Msa1189630:CDS 45.0%
! CTTCACATTGAAGGTGTGTC+CGG - chr8_1:31699925-31699944 None:intergenic 45.0%
AAGGCATGGACAATACTTGC+AGG + chr8_1:31700154-31700173 Msa1189630:CDS 45.0%
TGAATAACTCCAGCAGCTTG+AGG - chr8_1:31700719-31700738 None:intergenic 45.0%
TGTAGACTTGAAAGTGAGCC+AGG + chr8_1:31700985-31701004 Msa1189630:intron 45.0%
TGCCCCAATTGAGATTAGAG+AGG + chr8_1:31701155-31701174 Msa1189630:intron 45.0%
! CTAACCTTACTTTGAGGGTC+AGG + chr8_1:31701221-31701240 Msa1189630:intron 45.0%
TAGACCTGACCCTCAAAGTA+AGG - chr8_1:31701228-31701247 None:intergenic 45.0%
TTGGGCAGTGAAGAACTAAC+AGG + chr8_1:31701363-31701382 Msa1189630:intron 45.0%
CAAGACGCTCGATATTTGCA+GGG + chr8_1:31701791-31701810 Msa1189630:intron 45.0%
TGTAGCCGTCTCTACTTAGT+TGG + chr8_1:31702034-31702053 Msa1189630:intron 45.0%
!! CAAGCCAGTCTTGATGGATT+TGG + chr8_1:31702154-31702173 Msa1189630:intron 45.0%
!! TTTGTTGCTGCTGGTTCACT+TGG + chr8_1:31702310-31702329 Msa1189630:CDS 45.0%
TGTTTGCAGTTGCGATCTGA+AGG + chr8_1:31702431-31702450 Msa1189630:intron 45.0%
!! CATTTCCACTGATTCCCATC+TGG - chr8_1:31702523-31702542 None:intergenic 45.0%
!! ATTATTAATGTATAATAAAT+AGG - chr8_1:31700807-31700826 None:intergenic 5.0%
!! TAATAATTTAAATCAAAAAA+AGG + chr8_1:31700855-31700874 Msa1189630:intron 5.0%
! GACTTACGACGGCATTGAAG+AGG - chr8_1:31695222-31695241 None:intergenic 50.0%
AGGGAGAGAGTGACTTACGA+CGG - chr8_1:31695233-31695252 None:intergenic 50.0%
GAGGCCGTAGAGTTATACAG+TGG + chr8_1:31696342-31696361 Msa1189630:intron 50.0%
GCCGTAGAGTTATACAGTGG+TGG + chr8_1:31696345-31696364 Msa1189630:intron 50.0%
TGGCAAATTGGCGATGCGTT+AGG + chr8_1:31696516-31696535 Msa1189630:intron 50.0%
TTCTATGCTAAGGGGAAGGG+AGG + chr8_1:31696634-31696653 Msa1189630:intron 50.0%
AGCACTTGGAGACGAGAATC+TGG - chr8_1:31697408-31697427 None:intergenic 50.0%
!! TACTGAGATCGGAGAGCACT+TGG - chr8_1:31697422-31697441 None:intergenic 50.0%
GCAATCCTCACCTTACAAGC+CGG + chr8_1:31697628-31697647 Msa1189630:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr8_1:31697636-31697655 None:intergenic 50.0%
! TGAGGTGGACTCCATACTTC+AGG + chr8_1:31697816-31697835 Msa1189630:CDS 50.0%
GTTAAGGTCACAGATCGTGC+AGG - chr8_1:31698850-31698869 None:intergenic 50.0%
GTTGCATCTGAGTTGCAGTC+TGG + chr8_1:31699000-31699019 Msa1189630:CDS 50.0%
CTTCCTAGTCCTAGCCATCT+TGG + chr8_1:31699306-31699325 Msa1189630:intron 50.0%
GCTTTCTGAACTAGCGCTTG+AGG + chr8_1:31699580-31699599 Msa1189630:CDS 50.0%
! TGTCTGATAGCGACACGTGA+TGG + chr8_1:31699896-31699915 Msa1189630:intron 50.0%
ATCCACAGGAGACAAAGGCA+TGG + chr8_1:31700140-31700159 Msa1189630:intron 50.0%
TGATGCTTACCGTCTCTGCT+CGG - chr8_1:31700766-31700785 None:intergenic 50.0%
AGCAGAGACGGTAAGCATCA+TGG + chr8_1:31700766-31700785 Msa1189630:intron 50.0%
GAAAGTGAGCCAGGACAATC+TGG + chr8_1:31700994-31701013 Msa1189630:intron 50.0%
GTTGTACGGGGCAGATTGTT+GGG + chr8_1:31701345-31701364 Msa1189630:intron 50.0%
CCTGCAAATATCGAGCGTCT+TGG - chr8_1:31701793-31701812 None:intergenic 50.0%
CCAAGACGCTCGATATTTGC+AGG + chr8_1:31701790-31701809 Msa1189630:intron 50.0%
! CTTGGTGCAGCACGAGAAAA+AGG + chr8_1:31702328-31702347 Msa1189630:CDS 50.0%
! AAAGGGTGCAAGTCAAGGCG+AGG + chr8_1:31697497-31697516 Msa1189630:CDS 55.0%
TACTTACATGTGGCGCCCTC+TGG + chr8_1:31699143-31699162 Msa1189630:intron 55.0%
!! TAGCGACACGTGATGGACAC+CGG + chr8_1:31699903-31699922 Msa1189630:intron 55.0%
GTCCATGCCTTTGTCTCCTG+TGG - chr8_1:31700145-31700164 None:intergenic 55.0%
ATGACTGCACCTCAAGCTGC+TGG + chr8_1:31700707-31700726 Msa1189630:CDS 55.0%
GGGTTTCATCCGAGCAGAGA+CGG + chr8_1:31700754-31700773 Msa1189630:CDS 55.0%
CGTTGTACGGGGCAGATTGT+TGG + chr8_1:31701344-31701363 Msa1189630:intron 55.0%
!! CACTGATTCCCATCTGGGAG+TGG - chr8_1:31702517-31702536 None:intergenic 55.0%
CACTCCCAGATGGGAATCAG+TGG + chr8_1:31702515-31702534 Msa1189630:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 31694879 31702645 31694879 ID=Msa1189630;Name=Msa1189630
chr8_1 mRNA 31694879 31702645 31694879 ID=Msa1189630-mRNA-1;Parent=Msa1189630;Name=Msa1189630-mRNA-1;_AED=0.12;_eAED=0.12;_QI=155|0.8|0.81|1|1|1|11|0|410
chr8_1 exon 31694879 31695234 31694879 ID=Msa1189630-mRNA-1:exon:10856;Parent=Msa1189630-mRNA-1
chr8_1 exon 31697330 31697518 31697330 ID=Msa1189630-mRNA-1:exon:10857;Parent=Msa1189630-mRNA-1
chr8_1 exon 31697784 31697837 31697784 ID=Msa1189630-mRNA-1:exon:10858;Parent=Msa1189630-mRNA-1
chr8_1 exon 31698280 31698390 31698280 ID=Msa1189630-mRNA-1:exon:10859;Parent=Msa1189630-mRNA-1
chr8_1 exon 31698790 31699044 31698790 ID=Msa1189630-mRNA-1:exon:10860;Parent=Msa1189630-mRNA-1
chr8_1 exon 31699569 31699715 31699569 ID=Msa1189630-mRNA-1:exon:10861;Parent=Msa1189630-mRNA-1
chr8_1 exon 31700148 31700175 31700148 ID=Msa1189630-mRNA-1:exon:10862;Parent=Msa1189630-mRNA-1
chr8_1 exon 31700705 31700775 31700705 ID=Msa1189630-mRNA-1:exon:10863;Parent=Msa1189630-mRNA-1
chr8_1 exon 31702295 31702354 31702295 ID=Msa1189630-mRNA-1:exon:10864;Parent=Msa1189630-mRNA-1
chr8_1 exon 31702440 31702481 31702440 ID=Msa1189630-mRNA-1:exon:10865;Parent=Msa1189630-mRNA-1
chr8_1 exon 31702571 31702645 31702571 ID=Msa1189630-mRNA-1:exon:10866;Parent=Msa1189630-mRNA-1
chr8_1 five_prime_UTR 31694879 31695033 31694879 ID=Msa1189630-mRNA-1:five_prime_utr;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31695034 31695234 31695034 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31697330 31697518 31697330 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31697784 31697837 31697784 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31698280 31698390 31698280 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31698790 31699044 31698790 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31699569 31699715 31699569 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31700148 31700175 31700148 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31700705 31700775 31700705 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31702295 31702354 31702295 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31702440 31702481 31702440 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
chr8_1 CDS 31702571 31702645 31702571 ID=Msa1189630-mRNA-1:cds;Parent=Msa1189630-mRNA-1
Gene Sequence

>Msa1189630

ATGGCAAAACTAGTACCCAGTTTAGTTCATCCTTTGAAATCAAGGTTTTTCGGTAATACACTTTTAACCAAACAATCTTTTAACCTTTATGGAGTTCAACCAAAGCTTTCATATTCTTCTTCTTCTAAGATAAGCATGAGTCTCAAAGCTGGTATTGTTGGTCTTCCTAATGTTGGCAAATCTACCCTCTTCAATGCCGTCGTTGAAAACGGAAAGGCTCAAGCTGCCAATTTTCCTTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCCAAGTGCTCTCCGATCTCAGTAAATCTCAACGAATGGTTCCAGCATCCATAGAGTTTGTAGATATTGCTGGCCTTGTAAAGGGTGCAAGTCAAGGCGAGGGTCTCGGCAATAAGTTTTTATCACATATTCGTGAGGTGGACTCCATACTTCAGGTTGTACGATGTTTTGATGATAATGACATTATTCATGTGAACGGGAAAGTTGATCCCAAGTCTGATATTGACGTTATCAACTTGGAGCTTGTTTTCACAGACTTAGACCAGGAAGAGGCAGAAAAGACTGCATTGGAAAAAATTCGTGTAGCACTCTTGGATGGAAAACCTGCACGATCTGTGACCTTAACAGATTTTGAGAGGGAATCTGTAAAGCAACTTTGCTTGCTCACCATGAAACCCATTATATATGTGGCAAATGTTGCGGAGTCCGATCTAGCTGATGCAACAAACAATGATTACGTTATGGGTGTCAAGAATGTTGCATCTGAGTTGCAGTCTGGAATTGTAACAATTTCAGCGCAGGTTGAGGCAGAGCTTTCTGAACTAGCGCTTGAGGAAAGACAAGAATATTTGAAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGGAACCTAATTAGAGCAACATATGATCTTTTGGGGCTGCGAACTTATTTTACTTCCGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCATTCTGACTTTGAGAAGGGTTTCATCCGAGCAGAGACGGTGGCTTACAATGACTTTGTTGCTGCTGGTTCACTTGGTGCAGCACGAGAAAAAGGACTCTTGCGATCTGAAGGTAAAGACTACATTGTACAAGAAGGAGACGAAAATTTTCAGCCAATTGCTCGTTATAAAAGCATTGTTTTTGTTTGTGATAAATTTGAGGATGCTCCAAGCTAG

Protein sequence

>Msa1189630

MAKLVPSLVHPLKSRFFGNTLLTKQSFNLYGVQPKLSYSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSDLSKSQRMVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDPKSDIDVINLELVFTDLDQEEAEKTALEKIRVALLDGKPARSVTLTDFERESVKQLCLLTMKPIIYVANVAESDLADATNNDYVMGVKNVASELQSGIVTISAQVEAELSELALEERQEYLKSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYNDFVAAGSLGAAREKGLLRSEGKDYIVQEGDENFQPIARYKSIVFVCDKFEDAPS*