AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046090 MtrunA17_Chr1g0213401 87.339 387 9 1 1 387 1 347 0.0 647
Msa0046090 MtrunA17_Chr2g0278051 27.184 206 116 7 30 230 57 233 7.23e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046090 AT1G51110.1 65.833 360 117 2 31 384 48 407 7.74e-173 488

Find 111 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCAGAATTCTTATTTA+AGG 0.074360 1_1:-78120452 None:intergenic
TTTGGATATCCCCTGGAATT+TGG 0.199847 1_1:+78121525 Msa0046090:CDS
ACTGGATATGGAACTTTAAA+TGG 0.214190 1_1:-78119996 None:intergenic
TCCAAATGGGCCACCAATTA+TGG 0.218507 1_1:-78121508 None:intergenic
ATTTCCTTAAATAAGAATTC+TGG 0.253516 1_1:+78120448 Msa0046090:CDS
CAGCTCTGTCAAACCTAAAA+AGG 0.280928 1_1:-78119953 None:intergenic
AATTCTCGCTTCGTGTCTGC+TGG 0.283011 1_1:+78118641 Msa0046090:CDS
TCATCTCCGAGTAGCTTAAA+TGG 0.283845 1_1:-78120020 None:intergenic
AGCTTAAATGGAACTGGATA+TGG 0.306171 1_1:-78120008 None:intergenic
TCGTATCTCGAGAGGGAATA+AGG 0.306326 1_1:+78120091 Msa0046090:CDS
GCCATAATTGGTGGCCCATT+TGG 0.313713 1_1:+78121507 Msa0046090:CDS
TGAATGGGTGATGCTGTTCC+AGG 0.324887 1_1:-78119063 None:intergenic
ATGGATGATGCAGCCATAAT+TGG 0.328954 1_1:+78121495 Msa0046090:CDS
TTCAAGTCCTAGAACGTATA+GGG 0.331993 1_1:+78118876 Msa0046090:CDS
TGAACTTCTTGCCAAATTCC+AGG 0.338221 1_1:-78121536 None:intergenic
CACTCGCCCTCTTCTAGTTC+TGG 0.346170 1_1:-78120481 None:intergenic
AGGGCGAGTGGCAGATGATA+TGG 0.354825 1_1:+78120494 Msa0046090:CDS
ATCAGAAAATGACACAATAT+TGG 0.368308 1_1:-78119335 None:intergenic
TCTTTCAGAGAACATTTGTT+GGG 0.373540 1_1:+78119254 Msa0046090:intron
TTTCCTTAAATAAGAATTCT+GGG 0.380530 1_1:+78120449 Msa0046090:CDS
TGGAACAGCATCACCCATTC+AGG 0.383631 1_1:+78119065 Msa0046090:CDS
CCGAGTAGCTTAAATGGAAC+TGG 0.390540 1_1:-78120014 None:intergenic
GGGCTGAAGTTCTCCATGTC+TGG 0.404879 1_1:+78120874 Msa0046090:CDS
TTACAGATTGTTGGGAAGAA+TGG 0.408577 1_1:+78120820 Msa0046090:intron
AAGCGAGAATTTGAGGGATT+GGG 0.409134 1_1:-78118629 None:intergenic
GAAGCGAGAATTTGAGGGAT+TGG 0.409696 1_1:-78118630 None:intergenic
CTCTTTCAGAGAACATTTGT+TGG 0.410841 1_1:+78119253 Msa0046090:intron
AATAATAATAACAACCTGAA+TGG 0.411588 1_1:-78119079 None:intergenic
AATGAGTGTTACAGATTGTT+GGG 0.412973 1_1:+78120812 Msa0046090:intron
ATTCAAGTCCTAGAACGTAT+AGG 0.419239 1_1:+78118875 Msa0046090:CDS
TGGAAGAAATTTGAAAGAAA+AGG 0.420561 1_1:-78119976 None:intergenic
GACAAATTCAAGTTTGATTG+AGG 0.420832 1_1:+78119011 Msa0046090:intron
ACCACATACTTGTCGCATTC+AGG 0.425272 1_1:+78120062 Msa0046090:CDS
CAATGAGTGTTACAGATTGT+TGG 0.428126 1_1:+78120811 Msa0046090:intron
TACGTGGTTAATATCTTGCT+TGG 0.429109 1_1:+78120853 Msa0046090:CDS
TCACTCATCCAAGCTCTTGT+TGG 0.430914 1_1:+78118713 Msa0046090:CDS
ATTGTAACCTCGTACACTTT+GGG 0.434349 1_1:-78121474 None:intergenic
CATTGTAACCTCGTACACTT+TGG 0.437989 1_1:-78121475 None:intergenic
AAGAAGAACGTCCACGTCCT+TGG 0.440262 1_1:-78118739 None:intergenic
TTATTAACAGCAATTTCATC+GGG 0.446100 1_1:+78120311 Msa0046090:CDS
AAATAATTTGATTGTCTCCT+CGG 0.447447 1_1:-78121684 None:intergenic
ATTTGGCAAGAAGTTCATCT+TGG 0.458400 1_1:+78121542 Msa0046090:CDS
GTTGTGAATGTAAACAATAT+AGG 0.473230 1_1:+78118569 Msa0046090:CDS
CAAGTTTGATTGAGGGTCGC+TGG 0.473813 1_1:+78119019 Msa0046090:CDS
TTCCTTTGCAGATTCAATGA+TGG 0.476623 1_1:+78121646 Msa0046090:intron
AGACACGAAGCGAGAATTTG+AGG 0.477785 1_1:-78118636 None:intergenic
GATATTGTGTGATGAATGAT+TGG 0.478489 1_1:+78118430 None:intergenic
AATTCCAGGGGATATCCAAA+TGG 0.479222 1_1:-78121522 None:intergenic
ACAAATTCAAGTTTGATTGA+GGG 0.481218 1_1:+78119012 Msa0046090:CDS
TTTAGACTGTGACGGATAGT+TGG 0.481678 1_1:+78120681 Msa0046090:intron
CCAGTTCCATTTAAGCTACT+CGG 0.481795 1_1:+78120014 Msa0046090:CDS
ATAATAATAACAACCTGAAT+GGG 0.485224 1_1:-78119078 None:intergenic
CAAGCTCTTGTTGGCATCCA+AGG 0.485345 1_1:+78118722 Msa0046090:CDS
TGGCCCATTTGGATATCCCC+TGG 0.490686 1_1:+78121518 Msa0046090:CDS
GACAGACATAAACATAATCT+TGG 0.490695 1_1:+78118462 Msa0046090:five_prime_UTR
GTTATTAACAGCAATTTCAT+CGG 0.491170 1_1:+78120310 Msa0046090:CDS
ACGTGGTTAATATCTTGCTT+GGG 0.492417 1_1:+78120854 Msa0046090:CDS
GACACGAAGCGAGAATTTGA+GGG 0.500687 1_1:-78118635 None:intergenic
CTTGGATGCCAACAAGAGCT+TGG 0.505511 1_1:-78118721 None:intergenic
ATTCTCGCTTCGTGTCTGCT+GGG 0.506359 1_1:+78118642 Msa0046090:CDS
TTGCAGATTCAATGATGGTA+AGG 0.516539 1_1:+78121651 Msa0046090:intron
TATGTTATTATGTGTGTGGC+TGG 0.516556 1_1:-78118487 None:intergenic
TGTCTGTCTGTCTGTAACAA+TGG 0.522873 1_1:+78118532 Msa0046090:exon
CTTTCAGAGAACATTTGTTG+GGG 0.528025 1_1:+78119255 Msa0046090:intron
AAACAGGCAGCAGCATCCAT+TGG 0.529399 1_1:+78119915 Msa0046090:intron
CTGCTTTCCCATCAGACCAT+TGG 0.532262 1_1:-78120717 None:intergenic
GAACTTCTTGCCAAATTCCA+GGG 0.534199 1_1:-78121535 None:intergenic
AGAGAGACGTTGAGTTGCTG+TGG 0.535610 1_1:-78118764 None:intergenic
ATTCCAGGGGATATCCAAAT+GGG 0.537199 1_1:-78121521 None:intergenic
CTGTTATGTTATTATGTGTG+TGG 0.539291 1_1:-78118491 None:intergenic
CAATGGTCTGATGGGAAAGC+AGG 0.540494 1_1:+78120718 Msa0046090:CDS
GAATGCTGCCAATGGTCTGA+TGG 0.545354 1_1:+78120709 Msa0046090:CDS
CTAGCTAAATACAACATGGA+AGG 0.546362 1_1:+78121764 Msa0046090:three_prime_UTR
TTATTCTCTTTAGACTGTGA+CGG 0.547393 1_1:+78120673 Msa0046090:intron
GGAAACCTTCGTATCTCGAG+AGG 0.557760 1_1:+78120083 Msa0046090:CDS
CTTGTTGGCATCCAAGGACG+TGG 0.563106 1_1:+78118728 Msa0046090:CDS
TTGCTTCTGCAGCACAAATG+TGG 0.568163 1_1:-78120270 None:intergenic
AGAAGATCCAGAACTAGAAG+AGG 0.571950 1_1:+78120474 Msa0046090:CDS
TAAATACAACATGGAAGGGA+AGG 0.574465 1_1:+78121769 Msa0046090:three_prime_UTR
CTCAACTTTGAGCTCACCGA+TGG 0.576956 1_1:-78119359 None:intergenic
GCAGCAGCATCCATTGGAGA+TGG 0.578573 1_1:+78119921 Msa0046090:CDS
GCAGATGATATGGAATTCAC+AGG 0.579711 1_1:+78120504 Msa0046090:CDS
TGATGAATGATTGGCAAGAG+TGG 0.586726 1_1:+78118439 None:intergenic
TCCTGAATGCGACAAGTATG+TGG 0.590251 1_1:-78120063 None:intergenic
CAGAACTAGAAGAGGGCGAG+TGG 0.592200 1_1:+78120482 Msa0046090:CDS
CTACTCGGAGATGAAGCAAA+GGG 0.602582 1_1:+78120029 Msa0046090:CDS
TAGCTAAATACAACATGGAA+GGG 0.604145 1_1:+78121765 Msa0046090:three_prime_UTR
CAAAGTGTACGAGGTTACAA+TGG 0.607400 1_1:+78121476 Msa0046090:CDS
TGGTTAGAGAATGCTGCCAA+TGG 0.607813 1_1:+78120701 Msa0046090:CDS
TCGGAGATGAAGCAAAGGGT+TGG 0.610464 1_1:+78120033 Msa0046090:CDS
TCAAGTCCTAGAACGTATAG+GGG 0.612364 1_1:+78118877 Msa0046090:CDS
AATGCTGCCAATGGTCTGAT+GGG 0.614840 1_1:+78120710 Msa0046090:CDS
GACACAATATTGGTTACGCG+TGG 0.616061 1_1:-78119325 None:intergenic
TTCCTTAAATAAGAATTCTG+GGG 0.617362 1_1:+78120450 Msa0046090:CDS
ATTTAGCTAGCAATGATATG+TGG 0.624856 1_1:-78121751 None:intergenic
TATTCCCTCTCGAGATACGA+AGG 0.631516 1_1:-78120088 None:intergenic
GCTACTCGGAGATGAAGCAA+AGG 0.632918 1_1:+78120028 Msa0046090:CDS
CATCGGTGAGCTCAAAGTTG+AGG 0.633284 1_1:+78119360 Msa0046090:CDS
GATGATGCAGCCATAATTGG+TGG 0.633822 1_1:+78121498 Msa0046090:CDS
GAAGATCCAGAACTAGAAGA+GGG 0.640333 1_1:+78120475 Msa0046090:CDS
AACTTCTTGCCAAATTCCAG+GGG 0.647151 1_1:-78121534 None:intergenic
GATGAATGATTGGCAAGAGT+GGG 0.652728 1_1:+78118440 None:intergenic
ATTAACAGCAATTTCATCGG+GGG 0.654374 1_1:+78120313 Msa0046090:CDS
GAAACCTTCGTATCTCGAGA+GGG 0.664581 1_1:+78120084 Msa0046090:CDS
AAGTAGGCCCAAAGTGTACG+AGG 0.669717 1_1:+78121467 Msa0046090:CDS
ATTGCTAGCTAAATACAACA+TGG 0.692869 1_1:+78121760 Msa0046090:three_prime_UTR
TATTAACAGCAATTTCATCG+GGG 0.693361 1_1:+78120312 Msa0046090:CDS
CAAGTCCTAGAACGTATAGG+GGG 0.705630 1_1:+78118878 Msa0046090:CDS
GGTAAGGTCAGAATTAGCCG+AGG 0.716488 1_1:+78121667 Msa0046090:CDS
GAATGGACAAATAAAGTACG+TGG 0.718510 1_1:+78120837 Msa0046090:CDS
ATACTCGCACAAATGCATAG+TGG 0.741709 1_1:+78121713 Msa0046090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAAGTTAATTTTTTTA+GGG + chr1_1:78120580-78120599 Msa0046090:intron 10.0%
!!! TTTTTTTCAATAAACATAAC+TGG + chr1_1:78120366-78120385 Msa0046090:intron 15.0%
!! AGAAAAACAAAATTATTAGT+TGG - chr1_1:78120559-78120578 None:intergenic 15.0%
!!! CATTTGAAGTTAATTTTTTT+AGG + chr1_1:78120579-78120598 Msa0046090:intron 15.0%
!!! TATTTTAACCTTTTTTTTGT+TGG + chr1_1:78121912-78121931 Msa0046090:three_prime_UTR 15.0%
!! ATAATAATAACAACCTGAAT+GGG - chr1_1:78119081-78119100 None:intergenic 20.0%
!! AATAATAATAACAACCTGAA+TGG - chr1_1:78119082-78119101 None:intergenic 20.0%
!!! TTTTTTTAGTGTATTTCAAG+AGG + chr1_1:78119282-78119301 Msa0046090:CDS 20.0%
!! TAATACTAAGTAACTACAAT+TGG + chr1_1:78119383-78119402 Msa0046090:intron 20.0%
!!! AGTAAGTTTTTTAGTTTAAG+AGG + chr1_1:78119502-78119521 Msa0046090:intron 20.0%
!!! CTATTAACAAATTTTTGAAG+AGG - chr1_1:78119579-78119598 None:intergenic 20.0%
!! TATTATGACGATGTTTATAT+TGG - chr1_1:78120130-78120149 None:intergenic 20.0%
!! ATTTCCTTAAATAAGAATTC+TGG + chr1_1:78120448-78120467 Msa0046090:CDS 20.0%
!! TTTCCTTAAATAAGAATTCT+GGG + chr1_1:78120449-78120468 Msa0046090:CDS 20.0%
!! ATGTAAACAATTATCTTACA+AGG + chr1_1:78120626-78120645 Msa0046090:intron 20.0%
!! TATATTATACGAATGCTTTA+TGG + chr1_1:78121077-78121096 Msa0046090:intron 20.0%
!! TATAGGTTATAAAACAAAGT+TGG + chr1_1:78121300-78121319 Msa0046090:intron 20.0%
! GTTGTGAATGTAAACAATAT+AGG + chr1_1:78118569-78118588 Msa0046090:CDS 25.0%
! AAAGAGAAGAGAAAATAGAT+TGG - chr1_1:78118981-78119000 None:intergenic 25.0%
!! ACAAATTCAAGTTTGATTGA+GGG + chr1_1:78119012-78119031 Msa0046090:CDS 25.0%
! AATCATCATATCACTCAATA+TGG + chr1_1:78119214-78119233 Msa0046090:intron 25.0%
! ATCAGAAAATGACACAATAT+TGG - chr1_1:78119338-78119357 None:intergenic 25.0%
! AATTATGCCACATAATTCTA+AGG + chr1_1:78119546-78119565 Msa0046090:intron 25.0%
! AGTTAATATAGATAGCTTTC+TGG + chr1_1:78119652-78119671 Msa0046090:intron 25.0%
! TGAACAGCTATATGATATAA+TGG - chr1_1:78119741-78119760 None:intergenic 25.0%
!! ATGGAAAAAGAATCCTTTTT+AGG + chr1_1:78119940-78119959 Msa0046090:CDS 25.0%
! TGGAAGAAATTTGAAAGAAA+AGG - chr1_1:78119979-78119998 None:intergenic 25.0%
! GTTATTAACAGCAATTTCAT+CGG + chr1_1:78120310-78120329 Msa0046090:CDS 25.0%
! TTATTAACAGCAATTTCATC+GGG + chr1_1:78120311-78120330 Msa0046090:CDS 25.0%
! TTCCTTAAATAAGAATTCTG+GGG + chr1_1:78120450-78120469 Msa0046090:CDS 25.0%
!!! AGCTTAAATATTTTAGAGCA+TGG + chr1_1:78121263-78121282 Msa0046090:intron 25.0%
!!! AATATTTTAGAGCATGGTTA+AGG + chr1_1:78121269-78121288 Msa0046090:intron 25.0%
! TGGTTAAGGTTATAAAGTAT+AGG + chr1_1:78121283-78121302 Msa0046090:intron 25.0%
!!! GAAAATGGTAATTGATTTGA+AGG - chr1_1:78121330-78121349 None:intergenic 25.0%
!! TTTTACTTGACAGAAAAAGT+AGG + chr1_1:78121451-78121470 Msa0046090:intron 25.0%
!! AAATAGTAGATTTTGTATGC+TGG + chr1_1:78121604-78121623 Msa0046090:intron 25.0%
! AAATAATTTGATTGTCTCCT+CGG - chr1_1:78121687-78121706 None:intergenic 25.0%
GACAGACATAAACATAATCT+TGG + chr1_1:78118462-78118481 Msa0046090:five_prime_UTR 30.0%
CTGTTATGTTATTATGTGTG+TGG - chr1_1:78118494-78118513 None:intergenic 30.0%
! GACAAATTCAAGTTTGATTG+AGG + chr1_1:78119011-78119030 Msa0046090:intron 30.0%
TTAGGTAGGTATTATCAAGT+TGG - chr1_1:78119169-78119188 None:intergenic 30.0%
TCTTTCAGAGAACATTTGTT+GGG + chr1_1:78119254-78119273 Msa0046090:intron 30.0%
TCATGTCCTTCAATTTAAAC+AGG + chr1_1:78119899-78119918 Msa0046090:intron 30.0%
ACTGGATATGGAACTTTAAA+TGG - chr1_1:78119999-78120018 None:intergenic 30.0%
!!! GAACTAGCATTTTAATTGAG+GGG - chr1_1:78120170-78120189 None:intergenic 30.0%
!!! CGAACTAGCATTTTAATTGA+GGG - chr1_1:78120171-78120190 None:intergenic 30.0%
!!! ACGAACTAGCATTTTAATTG+AGG - chr1_1:78120172-78120191 None:intergenic 30.0%
! TATATGTTGCTGTTAAGTCT+TGG - chr1_1:78120236-78120255 None:intergenic 30.0%
AGCAACATATATATAGTGCA+GGG + chr1_1:78120245-78120264 Msa0046090:intron 30.0%
! GCTGTTAATAACTTTTGTCT+AGG - chr1_1:78120302-78120321 None:intergenic 30.0%
TATTAACAGCAATTTCATCG+GGG + chr1_1:78120312-78120331 Msa0046090:CDS 30.0%
! TTCCCCAGAATTCTTATTTA+AGG - chr1_1:78120455-78120474 None:intergenic 30.0%
TTATTCTCTTTAGACTGTGA+CGG + chr1_1:78120673-78120692 Msa0046090:intron 30.0%
AATGAGTGTTACAGATTGTT+GGG + chr1_1:78120812-78120831 Msa0046090:intron 30.0%
TTACACAAAAATTCCAGACA+TGG - chr1_1:78120890-78120909 None:intergenic 30.0%
GAATGGACGAATAAATATGA+AGG + chr1_1:78120949-78120968 Msa0046090:intron 30.0%
! TAGTCTTAACCACTTATAGA+AGG - chr1_1:78121225-78121244 None:intergenic 30.0%
! GTTAAGACTAGACTTTTACT+AGG + chr1_1:78121235-78121254 Msa0046090:intron 30.0%
! AAAGTTTTCATTTTCACGCA+GGG - chr1_1:78121352-78121371 None:intergenic 30.0%
! AAAAGTTTTCATTTTCACGC+AGG - chr1_1:78121353-78121372 None:intergenic 30.0%
ATAGTCATCACTAGATTATC+AGG + chr1_1:78121374-78121393 Msa0046090:intron 30.0%
TAGTCATCACTAGATTATCA+GGG + chr1_1:78121375-78121394 Msa0046090:intron 30.0%
!!! AGATTTTGTATGCTGGTTTA+AGG + chr1_1:78121611-78121630 Msa0046090:intron 30.0%
ATTTAGCTAGCAATGATATG+TGG - chr1_1:78121754-78121773 None:intergenic 30.0%
ATTGCTAGCTAAATACAACA+TGG + chr1_1:78121760-78121779 Msa0046090:three_prime_UTR 30.0%
TAGCTAAATACAACATGGAA+GGG + chr1_1:78121765-78121784 Msa0046090:three_prime_UTR 30.0%
TATGTTATTATGTGTGTGGC+TGG - chr1_1:78118490-78118509 None:intergenic 35.0%
! GAAAGGTGATGGTAAAATTC+AGG - chr1_1:78118838-78118857 None:intergenic 35.0%
! GAATTTTACCATCACCTTTC+AGG + chr1_1:78118838-78118857 Msa0046090:intron 35.0%
ATTCAAGTCCTAGAACGTAT+AGG + chr1_1:78118875-78118894 Msa0046090:CDS 35.0%
TTCAAGTCCTAGAACGTATA+GGG + chr1_1:78118876-78118895 Msa0046090:CDS 35.0%
GGTCTATCATCTCATGAAAA+AGG - chr1_1:78118960-78118979 None:intergenic 35.0%
AATACCTACCTAACACAACA+AGG + chr1_1:78119176-78119195 Msa0046090:intron 35.0%
GAGTGATATGATGATTAAGC+AGG - chr1_1:78119210-78119229 None:intergenic 35.0%
CTCTTTCAGAGAACATTTGT+TGG + chr1_1:78119253-78119272 Msa0046090:intron 35.0%
! CTTTCAGAGAACATTTGTTG+GGG + chr1_1:78119255-78119274 Msa0046090:intron 35.0%
! TGAAGTAGAGTTTAAAGCAG+AGG - chr1_1:78119432-78119451 None:intergenic 35.0%
!! ATGCCACATAATTCTAAGGT+TGG + chr1_1:78119550-78119569 Msa0046090:intron 35.0%
TAGCCAACCTTAGAATTATG+TGG - chr1_1:78119556-78119575 None:intergenic 35.0%
ATGACAAGCACAAACACAAA+CGG - chr1_1:78119710-78119729 None:intergenic 35.0%
!!! TCTCTGATCTTTTGAGACTT+TGG + chr1_1:78119779-78119798 Msa0046090:intron 35.0%
! GATTCTTTTTCCATCTCCAA+TGG - chr1_1:78119934-78119953 None:intergenic 35.0%
AGCTTAAATGGAACTGGATA+TGG - chr1_1:78120011-78120030 None:intergenic 35.0%
CAGCAACATATATATAGTGC+AGG + chr1_1:78120244-78120263 Msa0046090:intron 35.0%
ATTAACAGCAATTTCATCGG+GGG + chr1_1:78120313-78120332 Msa0046090:CDS 35.0%
GATGTGAAAAATAGCGACAA+TGG - chr1_1:78120399-78120418 None:intergenic 35.0%
TTCACATCCTTAATTCCAAC+AGG + chr1_1:78120411-78120430 Msa0046090:intron 35.0%
TCTATTGCCTGTTGGAATTA+AGG - chr1_1:78120421-78120440 None:intergenic 35.0%
TGAGTTTATCTATTGCCTGT+TGG - chr1_1:78120429-78120448 None:intergenic 35.0%
ATACACAAACTGTAAACGTG+AGG - chr1_1:78120789-78120808 None:intergenic 35.0%
CAATGAGTGTTACAGATTGT+TGG + chr1_1:78120811-78120830 Msa0046090:intron 35.0%
TTACAGATTGTTGGGAAGAA+TGG + chr1_1:78120820-78120839 Msa0046090:intron 35.0%
GAATGGACAAATAAAGTACG+TGG + chr1_1:78120837-78120856 Msa0046090:CDS 35.0%
TACGTGGTTAATATCTTGCT+TGG + chr1_1:78120853-78120872 Msa0046090:CDS 35.0%
ACGTGGTTAATATCTTGCTT+GGG + chr1_1:78120854-78120873 Msa0046090:CDS 35.0%
TTGCTAGTGTTACAGATTGT+TGG + chr1_1:78120923-78120942 Msa0046090:intron 35.0%
TGCTAGTGTTACAGATTGTT+GGG + chr1_1:78120924-78120943 Msa0046090:intron 35.0%
TTACAGATTGTTGGGAAGAA+TGG + chr1_1:78120820-78120839 Msa0046090:intron 35.0%
GGAATGTAGACAATGAAGAT+AGG + chr1_1:78120970-78120989 Msa0046090:intron 35.0%
TAGAAGTAATAACTGGAACC+TGG + chr1_1:78121030-78121049 Msa0046090:intron 35.0%
AGAAGTAATAACTGGAACCT+GGG + chr1_1:78121031-78121050 Msa0046090:intron 35.0%
ATGTTGGAATGTGATAAAGC+TGG + chr1_1:78121174-78121193 Msa0046090:intron 35.0%
GAACTCGATTCAATCAGAAT+GGG + chr1_1:78121196-78121215 Msa0046090:intron 35.0%
TCACTAGATTATCAGGGATA+AGG + chr1_1:78121381-78121400 Msa0046090:intron 35.0%
CACTAGATTATCAGGGATAA+GGG + chr1_1:78121382-78121401 Msa0046090:intron 35.0%
ACTAGATTATCAGGGATAAG+GGG + chr1_1:78121383-78121402 Msa0046090:intron 35.0%
ATTGTAACCTCGTACACTTT+GGG - chr1_1:78121477-78121496 None:intergenic 35.0%
ATTTGGCAAGAAGTTCATCT+TGG + chr1_1:78121542-78121561 Msa0046090:CDS 35.0%
TTCCTTTGCAGATTCAATGA+TGG + chr1_1:78121646-78121665 Msa0046090:intron 35.0%
TACCATCATTGAATCTGCAA+AGG - chr1_1:78121651-78121670 None:intergenic 35.0%
TTGCAGATTCAATGATGGTA+AGG + chr1_1:78121651-78121670 Msa0046090:intron 35.0%
CTAGCTAAATACAACATGGA+AGG + chr1_1:78121764-78121783 Msa0046090:three_prime_UTR 35.0%
TAAATACAACATGGAAGGGA+AGG + chr1_1:78121769-78121788 Msa0046090:three_prime_UTR 35.0%
! ATTACGTTTTTGCACGTTCT+TGG + chr1_1:78121858-78121877 Msa0046090:three_prime_UTR 35.0%
! TTACGTTTTTGCACGTTCTT+GGG + chr1_1:78121859-78121878 Msa0046090:three_prime_UTR 35.0%
TGTCTGTCTGTCTGTAACAA+TGG + chr1_1:78118532-78118551 Msa0046090:exon 40.0%
AAGCGAGAATTTGAGGGATT+GGG - chr1_1:78118632-78118651 None:intergenic 40.0%
! GGTGATGGTAAAATTCAGGA+AGG - chr1_1:78118834-78118853 None:intergenic 40.0%
TCAAGTCCTAGAACGTATAG+GGG + chr1_1:78118877-78118896 Msa0046090:CDS 40.0%
GAGCAAAATTGAAGACGAAC+CGG - chr1_1:78118914-78118933 None:intergenic 40.0%
! CTCATTTTCACTACAAGACC+TGG + chr1_1:78119045-78119064 Msa0046090:CDS 40.0%
! TGATCCTTGTTGTGTTAGGT+AGG - chr1_1:78119183-78119202 None:intergenic 40.0%
! TGAGTGATCCTTGTTGTGTT+AGG - chr1_1:78119187-78119206 None:intergenic 40.0%
!!! GTGTCATTTTCTGATGCCAT+CGG + chr1_1:78119343-78119362 Msa0046090:CDS 40.0%
TGACAAGCACAAACACAAAC+GGG - chr1_1:78119709-78119728 None:intergenic 40.0%
CTGCTGCCTGTTTAAATTGA+AGG - chr1_1:78119908-78119927 None:intergenic 40.0%
CAGCTCTGTCAAACCTAAAA+AGG - chr1_1:78119956-78119975 None:intergenic 40.0%
CCAGTTCCATTTAAGCTACT+CGG + chr1_1:78120014-78120033 Msa0046090:CDS 40.0%
TCATCTCCGAGTAGCTTAAA+TGG - chr1_1:78120023-78120042 None:intergenic 40.0%
!!! CTAGCATTTTAATTGAGGGG+AGG - chr1_1:78120167-78120186 None:intergenic 40.0%
AGAAGATCCAGAACTAGAAG+AGG + chr1_1:78120474-78120493 Msa0046090:CDS 40.0%
GAAGATCCAGAACTAGAAGA+GGG + chr1_1:78120475-78120494 Msa0046090:CDS 40.0%
GCAGATGATATGGAATTCAC+AGG + chr1_1:78120504-78120523 Msa0046090:CDS 40.0%
!! TTTAGACTGTGACGGATAGT+TGG + chr1_1:78120681-78120700 Msa0046090:intron 40.0%
GAGAGGGTAGAAGTAATAAC+TGG + chr1_1:78121023-78121042 Msa0046090:intron 40.0%
GTTATTAACGCCTTTCAGCA+AGG + chr1_1:78121099-78121118 Msa0046090:intron 40.0%
AGAAAAGAGTCCTTGCTGAA+AGG - chr1_1:78121112-78121131 None:intergenic 40.0%
TACGTTACATCTCCACTTCA+AGG - chr1_1:78121145-78121164 None:intergenic 40.0%
TTGAAGTGGAGATGTAACGT+AGG + chr1_1:78121144-78121163 Msa0046090:intron 40.0%
TGAAGTGGAGATGTAACGTA+GGG + chr1_1:78121145-78121164 Msa0046090:intron 40.0%
TAACGTAGGGGATTTCATGT+TGG + chr1_1:78121158-78121177 Msa0046090:intron 40.0%
GGAACTCGATTCAATCAGAA+TGG + chr1_1:78121195-78121214 Msa0046090:intron 40.0%
!! AATGGGTTGCCTTCTATAAG+TGG + chr1_1:78121213-78121232 Msa0046090:intron 40.0%
! TCATTTTCACGCAGGGAAAA+TGG - chr1_1:78121345-78121364 None:intergenic 40.0%
CATTGTAACCTCGTACACTT+TGG - chr1_1:78121478-78121497 None:intergenic 40.0%
CAAAGTGTACGAGGTTACAA+TGG + chr1_1:78121476-78121495 Msa0046090:CDS 40.0%
ATGGATGATGCAGCCATAAT+TGG + chr1_1:78121495-78121514 Msa0046090:CDS 40.0%
ATTCCAGGGGATATCCAAAT+GGG - chr1_1:78121524-78121543 None:intergenic 40.0%
AATTCCAGGGGATATCCAAA+TGG - chr1_1:78121525-78121544 None:intergenic 40.0%
TTTGGATATCCCCTGGAATT+TGG + chr1_1:78121525-78121544 Msa0046090:CDS 40.0%
AACTTCTTGCCAAATTCCAG+GGG - chr1_1:78121537-78121556 None:intergenic 40.0%
GAACTTCTTGCCAAATTCCA+GGG - chr1_1:78121538-78121557 None:intergenic 40.0%
TGAACTTCTTGCCAAATTCC+AGG - chr1_1:78121539-78121558 None:intergenic 40.0%
ATACTCGCACAAATGCATAG+TGG + chr1_1:78121713-78121732 Msa0046090:CDS 40.0%
! TACGTTTTTGCACGTTCTTG+GGG + chr1_1:78121860-78121879 Msa0046090:three_prime_UTR 40.0%
GAAGCGAGAATTTGAGGGAT+TGG - chr1_1:78118633-78118652 None:intergenic 45.0%
GACACGAAGCGAGAATTTGA+GGG - chr1_1:78118638-78118657 None:intergenic 45.0%
AGACACGAAGCGAGAATTTG+AGG - chr1_1:78118639-78118658 None:intergenic 45.0%
TCACTCATCCAAGCTCTTGT+TGG + chr1_1:78118713-78118732 Msa0046090:CDS 45.0%
CTCAATAGCCTGAAAGGTGA+TGG - chr1_1:78118849-78118868 None:intergenic 45.0%
CAAGTCCTAGAACGTATAGG+GGG + chr1_1:78118878-78118897 Msa0046090:CDS 45.0%
! GACACAATATTGGTTACGCG+TGG - chr1_1:78119328-78119347 None:intergenic 45.0%
TGGCTTTCTTCGTGTCTATC+AGG + chr1_1:78119672-78119691 Msa0046090:intron 45.0%
ATATGTCTGACCCTATCTCG+TGG + chr1_1:78119836-78119855 Msa0046090:intron 45.0%
TATGTCTGACCCTATCTCGT+GGG + chr1_1:78119837-78119856 Msa0046090:intron 45.0%
AGTCTTTGTCCCACGAGATA+GGG - chr1_1:78119849-78119868 None:intergenic 45.0%
AAGTCTTTGTCCCACGAGAT+AGG - chr1_1:78119850-78119869 None:intergenic 45.0%
CCGAGTAGCTTAAATGGAAC+TGG - chr1_1:78120017-78120036 None:intergenic 45.0%
CTACTCGGAGATGAAGCAAA+GGG + chr1_1:78120029-78120048 Msa0046090:CDS 45.0%
ACCACATACTTGTCGCATTC+AGG + chr1_1:78120062-78120081 Msa0046090:CDS 45.0%
TCCTGAATGCGACAAGTATG+TGG - chr1_1:78120066-78120085 None:intergenic 45.0%
GAAACCTTCGTATCTCGAGA+GGG + chr1_1:78120084-78120103 Msa0046090:CDS 45.0%
TATTCCCTCTCGAGATACGA+AGG - chr1_1:78120091-78120110 None:intergenic 45.0%
TCGTATCTCGAGAGGGAATA+AGG + chr1_1:78120091-78120110 Msa0046090:CDS 45.0%
CGAGAGGGAATAAGGTGATT+AGG + chr1_1:78120099-78120118 Msa0046090:intron 45.0%
TTGCTTCTGCAGCACAAATG+TGG - chr1_1:78120273-78120292 None:intergenic 45.0%
TGGTTAGAGAATGCTGCCAA+TGG + chr1_1:78120701-78120720 Msa0046090:CDS 45.0%
AATGCTGCCAATGGTCTGAT+GGG + chr1_1:78120710-78120729 Msa0046090:CDS 45.0%
TAAACGTGAGGCAGAACTTG+TGG - chr1_1:78120777-78120796 None:intergenic 45.0%
CTGTAACACTAGCAAACGTG+AGG - chr1_1:78120918-78120937 None:intergenic 45.0%
TGAGAGTAAGAGAGAGAGAG+AGG + chr1_1:78121006-78121025 Msa0046090:intron 45.0%
GAGAGTAAGAGAGAGAGAGA+GGG + chr1_1:78121007-78121026 Msa0046090:intron 45.0%
CTTTCCTAACATGCTAACCC+AGG - chr1_1:78121051-78121070 None:intergenic 45.0%
GAAGTGGAGATGTAACGTAG+GGG + chr1_1:78121146-78121165 Msa0046090:intron 45.0%
GATGATGCAGCCATAATTGG+TGG + chr1_1:78121498-78121517 Msa0046090:CDS 45.0%
TCCAAATGGGCCACCAATTA+TGG - chr1_1:78121511-78121530 None:intergenic 45.0%
AATTCTCGCTTCGTGTCTGC+TGG + chr1_1:78118641-78118660 Msa0046090:CDS 50.0%
ATTCTCGCTTCGTGTCTGCT+GGG + chr1_1:78118642-78118661 Msa0046090:CDS 50.0%
CTTGGATGCCAACAAGAGCT+TGG - chr1_1:78118724-78118743 None:intergenic 50.0%
CAAGCTCTTGTTGGCATCCA+AGG + chr1_1:78118722-78118741 Msa0046090:CDS 50.0%
AAGAAGAACGTCCACGTCCT+TGG - chr1_1:78118742-78118761 None:intergenic 50.0%
! AGAGAGACGTTGAGTTGCTG+TGG - chr1_1:78118767-78118786 None:intergenic 50.0%
AGCACGCTCAATAGCCTGAA+AGG - chr1_1:78118855-78118874 None:intergenic 50.0%
ACACACCCCCTATACGTTCT+AGG - chr1_1:78118886-78118905 None:intergenic 50.0%
! TATAGGGGGTGTGTCTGATC+CGG + chr1_1:78118892-78118911 Msa0046090:CDS 50.0%
CAAGTTTGATTGAGGGTCGC+TGG + chr1_1:78119019-78119038 Msa0046090:CDS 50.0%
TGAATGGGTGATGCTGTTCC+AGG - chr1_1:78119066-78119085 None:intergenic 50.0%
TGGAACAGCATCACCCATTC+AGG + chr1_1:78119065-78119084 Msa0046090:CDS 50.0%
CTCAACTTTGAGCTCACCGA+TGG - chr1_1:78119362-78119381 None:intergenic 50.0%
CATCGGTGAGCTCAAAGTTG+AGG + chr1_1:78119360-78119379 Msa0046090:CDS 50.0%
AAACAGGCAGCAGCATCCAT+TGG + chr1_1:78119915-78119934 Msa0046090:intron 50.0%
GCTACTCGGAGATGAAGCAA+AGG + chr1_1:78120028-78120047 Msa0046090:CDS 50.0%
TCGGAGATGAAGCAAAGGGT+TGG + chr1_1:78120033-78120052 Msa0046090:CDS 50.0%
GGAAACCTTCGTATCTCGAG+AGG + chr1_1:78120083-78120102 Msa0046090:CDS 50.0%
AACAGCAATTTCATCGGGGG+TGG + chr1_1:78120316-78120335 Msa0046090:CDS 50.0%
ACAGCAATTTCATCGGGGGT+GGG + chr1_1:78120317-78120336 Msa0046090:CDS 50.0%
GAATGCTGCCAATGGTCTGA+TGG + chr1_1:78120709-78120728 Msa0046090:CDS 50.0%
CTGCTTTCCCATCAGACCAT+TGG - chr1_1:78120720-78120739 None:intergenic 50.0%
CAATGGTCTGATGGGAAAGC+AGG + chr1_1:78120718-78120737 Msa0046090:CDS 50.0%
!! GGAACCTGGGTTAGCATGTT+AGG + chr1_1:78121044-78121063 Msa0046090:intron 50.0%
CTGTCTGCATGTCCTTGAAG+TGG + chr1_1:78121130-78121149 Msa0046090:intron 50.0%
AAGTAGGCCCAAAGTGTACG+AGG + chr1_1:78121467-78121486 Msa0046090:CDS 50.0%
! GCCATAATTGGTGGCCCATT+TGG + chr1_1:78121507-78121526 Msa0046090:CDS 50.0%
GGTAAGGTCAGAATTAGCCG+AGG + chr1_1:78121667-78121686 Msa0046090:CDS 50.0%
CTTGTTGGCATCCAAGGACG+TGG + chr1_1:78118728-78118747 Msa0046090:CDS 55.0%
GCAGCAGCATCCATTGGAGA+TGG + chr1_1:78119921-78119940 Msa0046090:CDS 55.0%
GGTGGGTGTTCGAGAGGTAA+GGG + chr1_1:78120334-78120353 Msa0046090:intron 55.0%
! TGTTCGAGAGGTAAGGGTGC+TGG + chr1_1:78120340-78120359 Msa0046090:intron 55.0%
!! CACTCGCCCTCTTCTAGTTC+TGG - chr1_1:78120484-78120503 None:intergenic 55.0%
CAGAACTAGAAGAGGGCGAG+TGG + chr1_1:78120482-78120501 Msa0046090:CDS 55.0%
AGGGCGAGTGGCAGATGATA+TGG + chr1_1:78120494-78120513 Msa0046090:CDS 55.0%
GGGCTGAAGTTCTCCATGTC+TGG + chr1_1:78120874-78120893 Msa0046090:CDS 55.0%
TGGCCCATTTGGATATCCCC+TGG + chr1_1:78121518-78121537 Msa0046090:CDS 55.0%
GGGTGGGTGTTCGAGAGGTA+AGG + chr1_1:78120333-78120352 Msa0046090:intron 60.0%
ATCGGGGGTGGGTGTTCGAG+AGG + chr1_1:78120328-78120347 Msa0046090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78118443 78121936 78118443 ID=Msa0046090;Name=Msa0046090
chr1_1 mRNA 78118443 78121936 78118443 ID=Msa0046090-mRNA-1;Parent=Msa0046090;Name=Msa0046090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=108|1|1|1|1|1|11|204|387
chr1_1 exon 78118443 78118778 78118443 ID=Msa0046090-mRNA-1:exon:26808;Parent=Msa0046090-mRNA-1
chr1_1 exon 78118860 78118913 78118860 ID=Msa0046090-mRNA-1:exon:26809;Parent=Msa0046090-mRNA-1
chr1_1 exon 78119012 78119086 78119012 ID=Msa0046090-mRNA-1:exon:26810;Parent=Msa0046090-mRNA-1
chr1_1 exon 78119262 78119381 78119262 ID=Msa0046090-mRNA-1:exon:26811;Parent=Msa0046090-mRNA-1
chr1_1 exon 78119921 78120112 78119921 ID=Msa0046090-mRNA-1:exon:26812;Parent=Msa0046090-mRNA-1
chr1_1 exon 78120266 78120349 78120266 ID=Msa0046090-mRNA-1:exon:26813;Parent=Msa0046090-mRNA-1
chr1_1 exon 78120433 78120525 78120433 ID=Msa0046090-mRNA-1:exon:26814;Parent=Msa0046090-mRNA-1
chr1_1 exon 78120686 78120739 78120686 ID=Msa0046090-mRNA-1:exon:26815;Parent=Msa0046090-mRNA-1
chr1_1 exon 78120826 78120905 78120826 ID=Msa0046090-mRNA-1:exon:26816;Parent=Msa0046090-mRNA-1
chr1_1 exon 78121464 78121571 78121464 ID=Msa0046090-mRNA-1:exon:26817;Parent=Msa0046090-mRNA-1
chr1_1 exon 78121657 78121936 78121657 ID=Msa0046090-mRNA-1:exon:26818;Parent=Msa0046090-mRNA-1
chr1_1 five_prime_UTR 78118443 78118550 78118443 ID=Msa0046090-mRNA-1:five_prime_utr;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78118551 78118778 78118551 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78118860 78118913 78118860 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78119012 78119086 78119012 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78119262 78119381 78119262 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78119921 78120112 78119921 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78120266 78120349 78120266 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78120433 78120525 78120433 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78120686 78120739 78120686 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78120826 78120905 78120826 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78121464 78121571 78121464 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 CDS 78121657 78121732 78121657 ID=Msa0046090-mRNA-1:cds;Parent=Msa0046090-mRNA-1
chr1_1 three_prime_UTR 78121733 78121936 78121733 ID=Msa0046090-mRNA-1:three_prime_utr;Parent=Msa0046090-mRNA-1
Gene Sequence

>Msa0046090

ATGGCTCTCACTCTCAGAGTTGTGAATGTAAACAATATAGGATTTGAGTCATGTTCACGTTGTTCAACTTTCGTTTCTCCCAATCCCTCAAATTCTCGCTTCGTGTCTGCTGGGTGTTCTAAAGTTGAGCAAATTTCAGTTGTTACTGAAGAATCTGAAAACTCACTCATCCAAGCTCTTGTTGGCATCCAAGGACGTGGACGTTCTTCTTCTCCACAGCAACTCAACGCTATTGAGCGTGCTATTCAAGTCCTAGAACGTATAGGGGGTGTGTCTGATCCGACAAATTCAAGTTTGATTGAGGGTCGCTGGCAGCTCATTTTCACTACAAGACCTGGAACAGCATCACCCATTCAGAGAACATTTGTTGGGGTTGATTTTTTTAGTGTATTTCAAGAGGTTTATCTTCAAACAAATGATCCACGCGTAACCAATATTGTGTCATTTTCTGATGCCATCGGTGAGCTCAAAGTTGAGGCAGCAGCATCCATTGGAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTCAAATTTCTTCCATTTAAAGTTCCATATCCAGTTCCATTTAAGCTACTCGGAGATGAAGCAAAGGGTTGGTTAGACACCACATACTTGTCGCATTCAGGAAACCTTCGTATCTCGAGAGGGAATAAGGGAACCACATTTGTGCTGCAGAAGCAAACTGAACCTAGACAAAAGTTATTAACAGCAATTTCATCGGGGGTGGGTGTTCGAGAGGCAATAGATAAACTCATTTCCTTAAATAAGAATTCTGGGGAAGAAGATCCAGAACTAGAAGAGGGCGAGTGGCAGATGATATGGAATTCACAGACTGTGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTGATGGGAAAGCAGATTGTTGGGAAGAATGGACAAATAAAGTACGTGGTTAATATCTTGCTTGGGCTGAAGTTCTCCATGTCTGGAATTTTTGTAAAAAGTAGGCCCAAAGTGTACGAGGTTACAATGGATGATGCAGCCATAATTGGTGGCCCATTTGGATATCCCCTGGAATTTGGCAAGAAGTTCATCTTGGAGATTCTATTCAATGATGGTAAGGTCAGAATTAGCCGAGGAGACAATCAAATTATTTTCGTACATACTCGCACAAATGCATAG

Protein sequence

>Msa0046090

MALTLRVVNVNNIGFESCSRCSTFVSPNPSNSRFVSAGCSKVEQISVVTEESENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLERIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVGKNGQIKYVVNILLGLKFSMSGIFVKSRPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRISRGDNQIIFVHTRTNA*