AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264670 MtrunA17_Chr4g0073551 95.333 150 5 1 1 150 1 148 2.35e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264670 AT2G24090.1 85.000 80 12 0 71 150 66 145 6.03e-44 142

Find 49 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATCAGCAAAGCGATTT+AGG 0.147866 8_2:-68201536 Msa1264670:CDS
CAAGATTGAACAAACCATTT+TGG 0.208259 8_2:+68201425 None:intergenic
TTTCACGAGTCACTGATATT+TGG 0.257574 8_2:+68199417 None:intergenic
AGTGACTATGACAATGTAAT+TGG 0.287106 8_2:-68199607 Msa1264670:CDS
ATTTAGCATGGTCCTGTCTA+AGG 0.305154 8_2:-68199516 Msa1264670:three_prime_UTR
GAAATTGAGACTCTCCAAAA+TGG 0.323830 8_2:-68201439 Msa1264670:intron
GGCATCAGCAAAGCGATTTA+GGG 0.327417 8_2:-68201535 Msa1264670:CDS
CGATTTAGGGTTACCGGTGC+TGG 0.339311 8_2:-68201522 Msa1264670:CDS
TAGTAACCATGGAATGGTTT+TGG 0.345248 8_2:+68201696 None:intergenic
CAAATGGTGTAAAAGCATAT+TGG 0.367232 8_2:+68199480 None:intergenic
AGACATATGTAATGCTAAAC+AGG 0.381633 8_2:+68199320 None:intergenic
GCAAAGCGATTTAGGGTTAC+CGG 0.390331 8_2:-68201528 Msa1264670:CDS
GTAAATGTGAATAGTAGAAA+TGG 0.410222 8_2:+68199349 None:intergenic
TCAATTCCCTCAAACTCAAT+TGG 0.415519 8_2:-68201748 Msa1264670:CDS
GAATTGACATTGTTTGAGAA+AGG 0.445692 8_2:+68201764 None:intergenic
CCATGTTAAGAGTGTGTTTG+TGG 0.447071 8_2:+68201891 None:intergenic
TACTAGACCAATTGAGTTTG+AGG 0.451953 8_2:+68201741 None:intergenic
ACTAGACCAATTGAGTTTGA+GGG 0.466679 8_2:+68201742 None:intergenic
CTCACTATCGTATCCGCTAA+AGG 0.476723 8_2:-68201659 Msa1264670:CDS
AAAATAAAACAACTTTCAAA+TGG 0.481515 8_2:+68199464 None:intergenic
TTTCTGTTTACTTTCAGATA+CGG 0.499482 8_2:+68199577 None:intergenic
AAAATCGTGCGTAGGAGAGC+AGG 0.513349 8_2:-68201498 Msa1264670:CDS
AGGATAGGATAGAACCTTGT+GGG 0.517887 8_2:+68201622 None:intergenic
TTGATTGCGTTTCAATCAAG+TGG 0.518158 8_2:+68202008 None:intergenic
GTAAGATTTCTACGCGGTTG+TGG 0.520009 8_2:+68201967 None:intergenic
ACACACTCTTAACATGGCGT+TGG 0.535399 8_2:-68201885 Msa1264670:exon
CATGGCGTTGGCTTCTGCAA+CGG 0.537190 8_2:-68201873 Msa1264670:CDS
TCTTAACCAAAACCATTCCA+TGG 0.537305 8_2:-68201702 Msa1264670:CDS
TGTAATGCTAAACAGGAAGA+TGG 0.539942 8_2:+68199327 None:intergenic
TTTCAATTTGTAGCCTTTAG+CGG 0.541342 8_2:+68201646 None:intergenic
GACTTCACAAATCCTTAGAC+AGG 0.543426 8_2:+68199504 None:intergenic
AATTGTTATTACATAATACA+AGG 0.547514 8_2:+68199387 None:intergenic
GCGAGGAGAAGTAGTAACCA+TGG 0.549868 8_2:+68201685 None:intergenic
GTTCTTGTAAATTGTGTGTG+AGG 0.563309 8_2:+68201913 None:intergenic
TTAGCATTACATATGTCTTG+TGG 0.568915 8_2:-68199315 Msa1264670:three_prime_UTR
CGAGTAGAGGAAGAAGAAGA+TGG 0.569694 8_2:+68201812 None:intergenic
TGAAAGTCTGAAGGCGGCAA+AGG 0.570084 8_2:+68201838 None:intergenic
CCACAAACACACTCTTAACA+TGG 0.593623 8_2:-68201891 Msa1264670:exon
TCTGAATTATGAATTTAGCA+TGG 0.600627 8_2:-68199528 Msa1264670:three_prime_UTR
GAGAAGTAGTAACCATGGAA+TGG 0.608033 8_2:+68201690 None:intergenic
AAGTCTGAAGGCGGCAAAGG+AGG 0.608560 8_2:+68201841 None:intergenic
GTAGAGGAAGAAGAAGATGG+TGG 0.614461 8_2:+68201815 None:intergenic
GGCGGCAAAGGAGGAGACTG+TGG 0.617952 8_2:+68201850 None:intergenic
AGATGGTGGTGAAAGTCTGA+AGG 0.634963 8_2:+68201829 None:intergenic
ACTGAAAGAGACACGAGTAG+AGG 0.649199 8_2:+68201799 None:intergenic
GATACGATAGTGAGAGAGCG+AGG 0.653895 8_2:+68201668 None:intergenic
CTACAAATTGAAAACCCACA+AGG 0.682218 8_2:-68201636 Msa1264670:intron
TGGTGGTGAAAGTCTGAAGG+CGG 0.693274 8_2:+68201832 None:intergenic
GATTGAGTAAGATTTCTACG+CGG 0.814577 8_2:+68201961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTGTGAATT+AGG - chr8_2:68200984-68201003 Msa1264670:intron 10.0%
!!! TTAATTGAATTTCATTTTTC+AGG - chr8_2:68199683-68199702 Msa1264670:intron 15.0%
!! AAAATAAAACAACTTTCAAA+TGG + chr8_2:68201778-68201797 None:intergenic 15.0%
!!! TTTATTTTACAAATGAATTG+AGG - chr8_2:68201790-68201809 Msa1264670:CDS 15.0%
!!! AATTGTTATTACATAATACA+AGG + chr8_2:68201855-68201874 None:intergenic 15.0%
!!! TAAATCAATTTTTTTCCTTA+TGG - chr8_2:68201947-68201966 Msa1264670:five_prime_UTR 15.0%
!! ATATTATCATCATTCTTCTT+TGG - chr8_2:68199863-68199882 Msa1264670:intron 20.0%
!!! TTTGGTATTTGTTTACTTTT+TGG - chr8_2:68199923-68199942 Msa1264670:intron 20.0%
!!! TGATTGATAATTCATAAGAT+AGG + chr8_2:68200519-68200538 None:intergenic 20.0%
!! GATATTGTTAATTAGTAAGT+TGG - chr8_2:68200660-68200679 Msa1264670:intron 20.0%
!!! TCATGTTATTTGTTAATAAG+AGG - chr8_2:68200699-68200718 Msa1264670:intron 20.0%
!!! CATGTTATTTGTTAATAAGA+GGG - chr8_2:68200700-68200719 Msa1264670:intron 20.0%
!!! ATGTTATTTGTTAATAAGAG+GGG - chr8_2:68200701-68200720 Msa1264670:intron 20.0%
!! TTAAATTAGCTATGAAATCA+TGG - chr8_2:68200897-68200916 Msa1264670:intron 20.0%
!! TAAATTAGCTATGAAATCAT+GGG - chr8_2:68200898-68200917 Msa1264670:intron 20.0%
!!! ATTTTTACCGAATTTTTTCT+TGG - chr8_2:68201497-68201516 Msa1264670:CDS 20.0%
!!! TTTTTACCGAATTTTTTCTT+GGG - chr8_2:68201498-68201517 Msa1264670:CDS 20.0%
!! AAAATTCCCAAGAAAAAATT+CGG + chr8_2:68201507-68201526 None:intergenic 20.0%
!! ACGAACAATTAAGTTAATTA+TGG - chr8_2:68201549-68201568 Msa1264670:intron 20.0%
! TACATAGTTAAACTTGAAGT+GGG + chr8_2:68199651-68199670 None:intergenic 25.0%
! ATACATAGTTAAACTTGAAG+TGG + chr8_2:68199652-68199671 None:intergenic 25.0%
! TCTACAAAAAGAATAAGAAG+AGG - chr8_2:68199778-68199797 Msa1264670:intron 25.0%
!! AAGTTTTACTACATGAAAGT+GGG - chr8_2:68200136-68200155 Msa1264670:intron 25.0%
!! GACATTGTAGATATTTTGTT+TGG + chr8_2:68200332-68200351 None:intergenic 25.0%
! AGTGATAAAAACTTGGTATT+TGG + chr8_2:68200632-68200651 None:intergenic 25.0%
! TCTATTGAGTGATAAAAACT+TGG + chr8_2:68200639-68200658 None:intergenic 25.0%
!! AAGTTTTTATCACTCAATAG+AGG - chr8_2:68200638-68200657 Msa1264670:intron 25.0%
!! AAAATTTGAAAAGTGCAACT+TGG + chr8_2:68201059-68201078 None:intergenic 25.0%
! ATCTCAGCAATAAATATTTG+CGG + chr8_2:68201128-68201147 None:intergenic 25.0%
! TGATAAATTACAACCTTCTA+TGG - chr8_2:68201170-68201189 Msa1264670:intron 25.0%
! GAATGATATTTGATATACTG+TGG - chr8_2:68201418-68201437 Msa1264670:intron 25.0%
! TTTCTGTTTACTTTCAGATA+CGG + chr8_2:68201665-68201684 None:intergenic 25.0%
! TCTGAATTATGAATTTAGCA+TGG - chr8_2:68201711-68201730 Msa1264670:CDS 25.0%
! GTAAATGTGAATAGTAGAAA+TGG + chr8_2:68201893-68201912 None:intergenic 25.0%
! TTTACAACAAAAAGTCCATA+AGG + chr8_2:68201965-68201984 None:intergenic 25.0%
!!! ACTTTTTGTTGTAAATCATG+TGG - chr8_2:68201970-68201989 Msa1264670:five_prime_UTR 25.0%
GAATTGACATTGTTTGAGAA+AGG + chr8_2:68199478-68199497 None:intergenic 30.0%
!!! GAATGGTTTTGGTTAAGAAT+TGG + chr8_2:68199535-68199554 None:intergenic 30.0%
TTTCAATTTGTAGCCTTTAG+CGG + chr8_2:68199596-68199615 None:intergenic 30.0%
! CAAGATTGAACAAACCATTT+TGG + chr8_2:68199817-68199836 None:intergenic 30.0%
! GAAGTTTTACTACATGAAAG+TGG - chr8_2:68200135-68200154 Msa1264670:intron 30.0%
ACACATGAAAAATAGAGAGA+AGG + chr8_2:68200268-68200287 None:intergenic 30.0%
ATATATCATGTAGCTCAAGT+AGG - chr8_2:68200365-68200384 Msa1264670:intron 30.0%
TCCTATATGAACATGGAAAT+CGG + chr8_2:68200407-68200426 None:intergenic 30.0%
TGATGTCAAAACGGTTTAAA+GGG + chr8_2:68200435-68200454 None:intergenic 30.0%
GATAATTCATAAGATAGGCA+AGG + chr8_2:68200514-68200533 None:intergenic 30.0%
TGAGAGAGAGAAAAAGATTA+AGG + chr8_2:68200569-68200588 None:intergenic 30.0%
! AATTAGTAAGTTGGCTAACT+AGG - chr8_2:68200669-68200688 Msa1264670:intron 30.0%
! TGCTGATTGTTTGTATTCAA+GGG - chr8_2:68200802-68200821 Msa1264670:intron 30.0%
! AGGCATTTTGTTAAGATTTG+TGG + chr8_2:68201023-68201042 None:intergenic 30.0%
ATCTTAACAAAATGCCTTGA+TGG - chr8_2:68201026-68201045 Msa1264670:intron 30.0%
TCTTAACAAAATGCCTTGAT+GGG - chr8_2:68201027-68201046 Msa1264670:intron 30.0%
GAGGACTAAAATAAAGTCAT+TGG - chr8_2:68201200-68201219 Msa1264670:intron 30.0%
CAGTATAGAATTTCATCACT+TGG - chr8_2:68201315-68201334 Msa1264670:intron 30.0%
ATAGAATTTCATCACTTGGA+AGG - chr8_2:68201319-68201338 Msa1264670:intron 30.0%
AGTGACTATGACAATGTAAT+TGG - chr8_2:68201632-68201651 Msa1264670:intron 30.0%
! CAAATGGTGTAAAAGCATAT+TGG + chr8_2:68201762-68201781 None:intergenic 30.0%
AGACATATGTAATGCTAAAC+AGG + chr8_2:68201922-68201941 None:intergenic 30.0%
TTAGCATTACATATGTCTTG+TGG - chr8_2:68201924-68201943 Msa1264670:five_prime_UTR 30.0%
TTGATTGCGTTTCAATCAAG+TGG + chr8_2:68199234-68199253 None:intergenic 35.0%
GATTGAGTAAGATTTCTACG+CGG + chr8_2:68199281-68199300 None:intergenic 35.0%
GTTCTTGTAAATTGTGTGTG+AGG + chr8_2:68199329-68199348 None:intergenic 35.0%
TCAATTCCCTCAAACTCAAT+TGG - chr8_2:68199491-68199510 Msa1264670:three_prime_UTR 35.0%
ACTAGACCAATTGAGTTTGA+GGG + chr8_2:68199500-68199519 None:intergenic 35.0%
TACTAGACCAATTGAGTTTG+AGG + chr8_2:68199501-68199520 None:intergenic 35.0%
!!! GTTTTGGTTAAGAATTGGAG+CGG + chr8_2:68199530-68199549 None:intergenic 35.0%
TCTTAACCAAAACCATTCCA+TGG - chr8_2:68199537-68199556 Msa1264670:three_prime_UTR 35.0%
! TAGTAACCATGGAATGGTTT+TGG + chr8_2:68199546-68199565 None:intergenic 35.0%
CTACAAATTGAAAACCCACA+AGG - chr8_2:68199603-68199622 Msa1264670:CDS 35.0%
GAAATTGAGACTCTCCAAAA+TGG - chr8_2:68199800-68199819 Msa1264670:intron 35.0%
TCATTGCTTACAACTGTGTT+TGG - chr8_2:68199905-68199924 Msa1264670:intron 35.0%
! TAGCTTGTATCTAACTCCTA+AGG + chr8_2:68200009-68200028 None:intergenic 35.0%
TTAGGAGTTAGATACAAGCT+AGG - chr8_2:68200008-68200027 Msa1264670:intron 35.0%
TAGGAGTTAGATACAAGCTA+GGG - chr8_2:68200009-68200028 Msa1264670:intron 35.0%
! TTTTGTGCAATTGTTATGCG+CGG - chr8_2:68200055-68200074 Msa1264670:intron 35.0%
!! AAAGTGGGTGACTTTTTCTT+CGG - chr8_2:68200151-68200170 Msa1264670:intron 35.0%
GTTGTGAGATTACTAGAAGA+GGG - chr8_2:68200179-68200198 Msa1264670:intron 35.0%
!! TTTTAGGAAATGGGAATGGA+TGG - chr8_2:68200206-68200225 Msa1264670:intron 35.0%
TGAAAAATAGAGAGAAGGCA+GGG + chr8_2:68200263-68200282 None:intergenic 35.0%
ATGAAAAATAGAGAGAAGGC+AGG + chr8_2:68200264-68200283 None:intergenic 35.0%
TCCGATTTCCATGTTCATAT+AGG - chr8_2:68200403-68200422 Msa1264670:intron 35.0%
GTGATGTCAAAACGGTTTAA+AGG + chr8_2:68200436-68200455 None:intergenic 35.0%
TCATAAGATAGGCAAGGTAA+AGG + chr8_2:68200508-68200527 None:intergenic 35.0%
ACTTATCACACAATTGAGTG+TGG - chr8_2:68200542-68200561 Msa1264670:intron 35.0%
AAACAATCAGCAGAGATTTG+AGG + chr8_2:68200794-68200813 None:intergenic 35.0%
! CTGCTGATTGTTTGTATTCA+AGG - chr8_2:68200801-68200820 Msa1264670:intron 35.0%
ATGAAATCATGGGTTTGAAC+TGG - chr8_2:68200908-68200927 Msa1264670:intron 35.0%
GACAGTAGAACAGAAAATTG+TGG + chr8_2:68201106-68201125 None:intergenic 35.0%
AACCTTCTATGGAAAATGTG+AGG - chr8_2:68201181-68201200 Msa1264670:intron 35.0%
TCAATTGAACTGAACTGTAG+TGG - chr8_2:68201247-68201266 Msa1264670:intron 35.0%
! AAATCCAAGTGTTGTTAGGA+TGG + chr8_2:68201389-68201408 None:intergenic 35.0%
! CTAGAAATCCAAGTGTTGTT+AGG + chr8_2:68201393-68201412 None:intergenic 35.0%
TCAACCAAAATGCCACATTT+CGG + chr8_2:68201473-68201492 None:intergenic 35.0%
TTTCACGAGTCACTGATATT+TGG + chr8_2:68201825-68201844 None:intergenic 35.0%
TGTAATGCTAAACAGGAAGA+TGG + chr8_2:68201915-68201934 None:intergenic 35.0%
! CCATGTTAAGAGTGTGTTTG+TGG + chr8_2:68199351-68199370 None:intergenic 40.0%
CCACAAACACACTCTTAACA+TGG - chr8_2:68199348-68199367 Msa1264670:three_prime_UTR 40.0%
GAGAAGTAGTAACCATGGAA+TGG + chr8_2:68199552-68199571 None:intergenic 40.0%
AGGATAGGATAGAACCTTGT+GGG + chr8_2:68199620-68199639 None:intergenic 40.0%
! AAGTGGGTTTGAAAGAGGAT+AGG + chr8_2:68199635-68199654 None:intergenic 40.0%
! ACTTGAAGTGGGTTTGAAAG+AGG + chr8_2:68199640-68199659 None:intergenic 40.0%
! CTAACTCCTAAGGTACTCTT+GGG + chr8_2:68199999-68200018 None:intergenic 40.0%
! TCTAACTCCTAAGGTACTCT+TGG + chr8_2:68200000-68200019 None:intergenic 40.0%
GTTAGATACAAGCTAGGGTA+TGG - chr8_2:68200014-68200033 Msa1264670:intron 40.0%
!! AAGTGGGTGACTTTTTCTTC+GGG - chr8_2:68200152-68200171 Msa1264670:intron 40.0%
GGTTGTGAGATTACTAGAAG+AGG - chr8_2:68200178-68200197 Msa1264670:intron 40.0%
!! TGGCTTTTAGGAAATGGGAA+TGG - chr8_2:68200202-68200221 Msa1264670:intron 40.0%
ATGGGAATGGATGGAAAAGT+TGG - chr8_2:68200215-68200234 Msa1264670:intron 40.0%
ATGGATGGAAAAGTTGGACT+TGG - chr8_2:68200221-68200240 Msa1264670:intron 40.0%
GGCATCATCCTATATGAACA+TGG + chr8_2:68200414-68200433 None:intergenic 40.0%
CTTGATGCGTGATGTCAAAA+CGG + chr8_2:68200444-68200463 None:intergenic 40.0%
ACAAGATAGGTCACTCTCTA+AGG + chr8_2:68200729-68200748 None:intergenic 40.0%
GAGTGACCTATCTTGTCAAA+TGG - chr8_2:68200733-68200752 Msa1264670:intron 40.0%
GACCTATCTTGTCAAATGGA+AGG - chr8_2:68200737-68200756 Msa1264670:intron 40.0%
CTCCTTCCATTTGACAAGAT+AGG + chr8_2:68200742-68200761 None:intergenic 40.0%
TCTTGTCAAATGGAAGGAGT+AGG - chr8_2:68200743-68200762 Msa1264670:intron 40.0%
CTTGTCAAATGGAAGGAGTA+GGG - chr8_2:68200744-68200763 Msa1264670:intron 40.0%
TTGTCAAATGGAAGGAGTAG+GGG - chr8_2:68200745-68200764 Msa1264670:intron 40.0%
AGTAGGGGGCTTAATGAATT+TGG - chr8_2:68200760-68200779 Msa1264670:intron 40.0%
GTAGGGGGCTTAATGAATTT+GGG - chr8_2:68200761-68200780 Msa1264670:intron 40.0%
AACTTGGAATACACCCATCA+AGG + chr8_2:68201043-68201062 None:intergenic 40.0%
! GTCCTCACATTTTCCATAGA+AGG + chr8_2:68201186-68201205 None:intergenic 40.0%
! AGTGTTGTTAGGATGGATGT+GGG + chr8_2:68201382-68201401 None:intergenic 40.0%
! AAGTGTTGTTAGGATGGATG+TGG + chr8_2:68201383-68201402 None:intergenic 40.0%
ACATCCATCCTAACAACACT+TGG - chr8_2:68201382-68201401 Msa1264670:intron 40.0%
CAACCAAAATGCCACATTTC+GGG + chr8_2:68201472-68201491 None:intergenic 40.0%
ATTTAGCATGGTCCTGTCTA+AGG - chr8_2:68201723-68201742 Msa1264670:CDS 40.0%
GACTTCACAAATCCTTAGAC+AGG + chr8_2:68201738-68201757 None:intergenic 40.0%
GTAAGATTTCTACGCGGTTG+TGG + chr8_2:68199275-68199294 None:intergenic 45.0%
ACACACTCTTAACATGGCGT+TGG - chr8_2:68199354-68199373 Msa1264670:three_prime_UTR 45.0%
! AGATGGTGGTGAAAGTCTGA+AGG + chr8_2:68199413-68199432 None:intergenic 45.0%
GTAGAGGAAGAAGAAGATGG+TGG + chr8_2:68199427-68199446 None:intergenic 45.0%
CGAGTAGAGGAAGAAGAAGA+TGG + chr8_2:68199430-68199449 None:intergenic 45.0%
ACTGAAAGAGACACGAGTAG+AGG + chr8_2:68199443-68199462 None:intergenic 45.0%
CTCACTATCGTATCCGCTAA+AGG - chr8_2:68199580-68199599 Msa1264670:CDS 45.0%
GAGGATAGGATAGAACCTTG+TGG + chr8_2:68199621-68199640 None:intergenic 45.0%
AGGCATCAGCAAAGCGATTT+AGG - chr8_2:68199703-68199722 Msa1264670:intron 45.0%
GGCATCAGCAAAGCGATTTA+GGG - chr8_2:68199704-68199723 Msa1264670:intron 45.0%
! GCAAAGCGATTTAGGGTTAC+CGG - chr8_2:68199711-68199730 Msa1264670:intron 45.0%
! AAGGTACTCTTGGGCAAGAA+AGG + chr8_2:68199990-68200009 None:intergenic 45.0%
!! TTCTTGCCCAAGAGTACCTT+AGG - chr8_2:68199990-68200009 Msa1264670:intron 45.0%
TACAAGCTAGGGTATGGAAC+TGG - chr8_2:68200020-68200039 Msa1264670:intron 45.0%
!! GGTGACTTTTTCTTCGGGTT+GGG - chr8_2:68200157-68200176 Msa1264670:intron 45.0%
GTGAGATTACTAGAAGAGGG+TGG - chr8_2:68200182-68200201 Msa1264670:intron 45.0%
! ACTAGAAGAGGGTGGCTTTT+AGG - chr8_2:68200190-68200209 Msa1264670:intron 45.0%
!! AGAGGGTGGCTTTTAGGAAA+TGG - chr8_2:68200196-68200215 Msa1264670:intron 45.0%
!! GAGGGTGGCTTTTAGGAAAT+GGG - chr8_2:68200197-68200216 Msa1264670:intron 45.0%
TGTCAAATGGAAGGAGTAGG+GGG - chr8_2:68200746-68200765 Msa1264670:intron 45.0%
GGGGCTTAATGAATTTGGGA+GGG - chr8_2:68200765-68200784 Msa1264670:intron 45.0%
GCTTAATGAATTTGGGAGGG+TGG - chr8_2:68200768-68200787 Msa1264670:intron 45.0%
TGTTAGGATGGATGTGGGTT+TGG + chr8_2:68201377-68201396 None:intergenic 45.0%
! TCACCCGAAATGTGGCATTT+TGG - chr8_2:68201466-68201485 Msa1264670:CDS 45.0%
TGAAAGTCTGAAGGCGGCAA+AGG + chr8_2:68199404-68199423 None:intergenic 50.0%
! TGGTGGTGAAAGTCTGAAGG+CGG + chr8_2:68199410-68199429 None:intergenic 50.0%
GCGAGGAGAAGTAGTAACCA+TGG + chr8_2:68199557-68199576 None:intergenic 50.0%
GATACGATAGTGAGAGAGCG+AGG + chr8_2:68199574-68199593 None:intergenic 50.0%
! ACGCACGATTTTTCCAGCAC+CGG + chr8_2:68199733-68199752 None:intergenic 50.0%
GTGCTGGAAAAATCGTGCGT+AGG - chr8_2:68199733-68199752 Msa1264670:intron 50.0%
AAAATCGTGCGTAGGAGAGC+AGG - chr8_2:68199741-68199760 Msa1264670:intron 50.0%
!! GGGTGACTTTTTCTTCGGGT+TGG - chr8_2:68200156-68200175 Msa1264670:intron 50.0%
GGGGGCTTAATGAATTTGGG+AGG - chr8_2:68200764-68200783 Msa1264670:intron 50.0%
TGTGGAGAAGCTCAAGTGTC+TGG - chr8_2:68201436-68201455 Msa1264670:intron 50.0%
AGAAGCTCAAGTGTCTGGCT+TGG - chr8_2:68201441-68201460 Msa1264670:CDS 50.0%
GCTTGGATTCACCCGAAATG+TGG - chr8_2:68201458-68201477 Msa1264670:CDS 50.0%
!! CATGGCGTTGGCTTCTGCAA+CGG - chr8_2:68199366-68199385 Msa1264670:three_prime_UTR 55.0%
AAGTCTGAAGGCGGCAAAGG+AGG + chr8_2:68199401-68199420 None:intergenic 55.0%
! CGATTTAGGGTTACCGGTGC+TGG - chr8_2:68199717-68199736 Msa1264670:intron 55.0%
GGCGGCAAAGGAGGAGACTG+TGG + chr8_2:68199392-68199411 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 68199226 68202035 68199226 ID=Msa1264670;Name=Msa1264670
chr8_2 mRNA 68199226 68202035 68199226 ID=Msa1264670-mRNA-1;Parent=Msa1264670;Name=Msa1264670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=141|1|1|1|1|1|3|341|150
chr8_2 exon 68199226 68199644 68199226 ID=Msa1264670-mRNA-1:exon:22582;Parent=Msa1264670-mRNA-1
chr8_2 exon 68201440 68201556 68201440 ID=Msa1264670-mRNA-1:exon:22581;Parent=Msa1264670-mRNA-1
chr8_2 exon 68201637 68202035 68201637 ID=Msa1264670-mRNA-1:exon:22580;Parent=Msa1264670-mRNA-1
chr8_2 five_prime_UTR 68201895 68202035 68201895 ID=Msa1264670-mRNA-1:five_prime_utr;Parent=Msa1264670-mRNA-1
chr8_2 CDS 68201637 68201894 68201637 ID=Msa1264670-mRNA-1:cds;Parent=Msa1264670-mRNA-1
chr8_2 CDS 68201440 68201556 68201440 ID=Msa1264670-mRNA-1:cds;Parent=Msa1264670-mRNA-1
chr8_2 CDS 68199567 68199644 68199567 ID=Msa1264670-mRNA-1:cds;Parent=Msa1264670-mRNA-1
chr8_2 three_prime_UTR 68199226 68199566 68199226 ID=Msa1264670-mRNA-1:three_prime_utr;Parent=Msa1264670-mRNA-1
Gene Sequence

>Msa1264670

ATGGCGTTGGCTTCTGCAACGGCCACAGTCTCCTCCTTTGCCGCCTTCAGACTTTCACCACCATCTTCTTCTTCCTCTACTCGTGTCTCTTTCAGTTCAGTTAAATCACCTTTCTCAAACAATGTCAATTCCCTCAAACTCAATTGGTCTAGTAGTATTTCCGCTCCAATTCTTAACCAAAACCATTCCATGGTTACTACTTCTCCTCGCTCTCTCACTATCGTATCCGCTAAAGGCTACAAATTGAAAACCCACAAGGCATCAGCAAAGCGATTTAGGGTTACCGGTGCTGGAAAAATCGTGCGTAGGAGAGCAGGAAAGCAACATTTGCTCTACAAAAAGAATAAGAAGAGGAAATTGAGACTCTCCAAAATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCGTATCTGAAAGTAAACAGAAAAGCTACGTAA

Protein sequence

>Msa1264670

MALASATATVSSFAAFRLSPPSSSSSTRVSFSSVKSPFSNNVNSLKLNWSSSISAPILNQNHSMVTTSPRSLTIVSAKGYKLKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRKAT*