AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374330 MtrunA17_Chr3g0124861 95.816 239 6 1 1 239 1 235 2.91e-164 453
Msa0374330 MtrunA17_Chr8g0352871 54.494 178 66 2 19 195 6 169 2.14e-59 185
Msa0374330 MtrunA17_Chr3g0082861 59.477 153 48 2 22 173 4 143 1.92e-58 182
Msa0374330 MtrunA17_Chr7g0256551 54.706 170 58 5 22 186 9 164 2.04e-54 174
Msa0374330 MtrunA17_Chr3g0128691 53.472 144 48 2 23 166 19 143 3.19e-48 156
Msa0374330 MtrunA17_Chr5g0414931 45.455 187 82 5 20 204 14 182 3.63e-48 159
Msa0374330 MtrunA17_Chr3g0118211 50.649 154 53 3 21 173 22 153 9.55e-48 156
Msa0374330 MtrunA17_Chr1g0170741 53.289 152 51 4 20 170 6 138 2.47e-46 152
Msa0374330 MtrunA17_Chr4g0059571 49.351 154 55 3 21 173 25 156 1.09e-44 149
Msa0374330 MtrunA17_Chr4g0021731 47.573 103 32 2 19 121 8 88 1.39e-25 96.3
Msa0374330 MtrunA17_Chr1g0181811 31.034 116 79 1 99 213 131 246 5.45e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374330 AT2G41310.1 58.170 153 49 3 22 173 9 147 4.92e-59 186
Msa0374330 AT3G57040.2 57.051 156 54 3 19 173 6 149 1.95e-56 180
Msa0374330 AT3G57040.1 57.051 156 54 3 19 173 6 149 1.95e-56 180
Msa0374330 AT1G59940.1 47.647 170 66 3 11 179 22 169 4.55e-49 161
Msa0374330 AT3G48100.1 51.592 157 54 3 22 177 25 160 1.51e-47 155
Msa0374330 AT1G59940.2 47.647 170 66 3 11 179 114 261 1.86e-47 159
Msa0374330 AT1G10470.3 50.000 162 58 3 17 177 15 154 4.43e-47 156
Msa0374330 AT5G62920.1 53.947 152 47 3 22 172 25 154 6.29e-47 154
Msa0374330 AT1G10470.1 50.000 162 58 3 17 177 29 168 6.59e-47 156
Msa0374330 AT3G56380.1 51.299 154 53 3 19 171 17 149 2.50e-45 149
Msa0374330 AT1G19050.1 50.327 153 53 3 21 172 23 153 2.98e-45 150
Msa0374330 AT3G56380.2 50.323 155 54 3 19 171 17 150 7.37e-45 147
Msa0374330 AT1G74890.1 48.718 156 57 3 21 175 17 150 2.30e-44 148
Msa0374330 AT2G40670.1 46.835 158 54 3 20 171 27 160 1.31e-41 140
Msa0374330 AT2G40670.2 45.912 159 55 3 20 171 27 161 3.13e-41 139
Msa0374330 AT2G07440.1 53.846 52 24 0 122 173 10 61 8.37e-15 69.3
Msa0374330 AT1G10470.2 36.471 85 53 1 92 175 6 90 1.22e-13 67.4

Find 73 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGCCAACCCTTTCATTT+TGG 0.085264 3_1:+73756056 None:intergenic
CTGCACTGCAGGGATCTTCT+TGG 0.261594 3_1:-73756606 Msa0374330:intron
TCTCTCATTCCCCTTTCAAT+TGG 0.305421 3_1:+73759742 None:intergenic
GATAAGGCTTTGAAATATCT+TGG 0.316965 3_1:-73759102 Msa0374330:CDS
TGCAATCTTTAAATTACTTT+GGG 0.329603 3_1:-73755825 None:intergenic
TTGCAATCTTTAAATTACTT+TGG 0.342091 3_1:-73755826 None:intergenic
TCTGATGACATAACCACAAC+TGG 0.369928 3_1:+73756574 None:intergenic
AATTGATATGGAGCTTGCTT+TGG 0.375819 3_1:-73759427 Msa0374330:exon
AAGCAAGCTCCATATCAATT+TGG 0.381935 3_1:+73759430 None:intergenic
TATTCATCACCAAATTGATA+TGG 0.391096 3_1:-73759439 Msa0374330:exon
CAAATAAAATCCAATTGAAA+GGG 0.426510 3_1:-73759752 Msa0374330:five_prime_UTR
CATTTGTACATAAATTTAAG+TGG 0.429695 3_1:+73755877 None:intergenic
ATTGATCTCTCTGGAGGCTC+AGG 0.433469 3_1:+73756081 None:intergenic
GTCCGAGTCTGTGGTGGTAG+TGG 0.436880 3_1:+73756185 None:intergenic
GGGAAGATGATGAATGAGAG+TGG 0.441227 3_1:+73759533 None:intergenic
ATGACAGATTATTGCATGCC+TGG 0.445954 3_1:-73757830 Msa0374330:CDS
TAGTAGCTTTATTCTATTAG+TGG 0.456713 3_1:+73759588 None:intergenic
AATGAAAGGGTTGGCGGTGG+TGG 0.458526 3_1:-73756052 Msa0374330:CDS
GCTAATAGGTGCTTGGAAGA+AGG 0.458769 3_1:-73756321 Msa0374330:intron
TGCAATATCTAGACGACAAA+GGG 0.464493 3_1:+73755844 None:intergenic
CAACGTGGTGGAGAGAATCT+AGG 0.465538 3_1:-73759695 Msa0374330:five_prime_UTR
AGTAGCTTTATTCTATTAGT+GGG 0.472302 3_1:+73759589 None:intergenic
CTGTGTGGACTCTGGAGATA+AGG 0.474705 3_1:-73759118 Msa0374330:CDS
ACTTACATGCTAATTCTAGA+AGG 0.476558 3_1:+73756544 None:intergenic
TCAAATAAAATCCAATTGAA+AGG 0.478763 3_1:-73759753 Msa0374330:five_prime_UTR
ATTACCTCTTGTAGCTGCAA+TGG 0.489838 3_1:+73758997 None:intergenic
CTAATAGGTGCTTGGAAGAA+GGG 0.490036 3_1:-73756320 Msa0374330:intron
TAATTTGGCTAATAGGTGCT+TGG 0.497490 3_1:-73756328 Msa0374330:intron
ACAGTTACCTGTGTGGACTC+TGG 0.503672 3_1:-73759126 Msa0374330:intron
CTCTGGAGGCTCAGGAGACA+TGG 0.506463 3_1:+73756089 None:intergenic
CATCAGCATGATGACCCAAT+GGG 0.522832 3_1:-73759807 None:intergenic
TTGGAAAGATGTTCCAGTTG+TGG 0.523397 3_1:-73756587 Msa0374330:CDS
AGATCAATGCCCAAAATGAA+AGG 0.528945 3_1:-73756066 Msa0374330:CDS
CTTAGAGATTCTTCATGCAA+AGG 0.532173 3_1:-73759300 Msa0374330:intron
TAGATGATAGTGTCATTGAT+AGG 0.538094 3_1:-73759341 Msa0374330:CDS
TTGGGCATTGATCTCTCTGG+AGG 0.540639 3_1:+73756075 None:intergenic
AAATCATAGCCACTCATCCC+AGG 0.545060 3_1:+73757812 None:intergenic
AACGTGGTGGAGAGAATCTA+GGG 0.557971 3_1:-73759694 Msa0374330:five_prime_UTR
GCCCAAAATGAAAGGGTTGG+CGG 0.559802 3_1:-73756058 Msa0374330:CDS
ACTGTAGTGGAACAGTGGTA+TGG 0.562212 3_1:+73759627 None:intergenic
TGCAAATCTGATAACTGAAG+AGG 0.563149 3_1:+73756276 None:intergenic
GCAAGAACACTTTCATGTGT+TGG 0.563382 3_1:-73759367 Msa0374330:CDS
TTCCACTACCACCACAGACT+CGG 0.564431 3_1:-73756187 Msa0374330:CDS
CCATCAGCATGATGACCCAA+TGG 0.567336 3_1:-73759808 None:intergenic
GATCAATGCCCAAAATGAAA+GGG 0.575333 3_1:-73756065 Msa0374330:CDS
TGACAGATTATTGCATGCCT+GGG 0.579945 3_1:-73757829 Msa0374330:CDS
TGCAATGGTTGTTGAAGAGG+AGG 0.579983 3_1:+73759012 None:intergenic
TGAGAGTGGGAAAAGAGAGG+TGG 0.584714 3_1:+73759547 None:intergenic
AGCTGCAATGGTTGTTGAAG+AGG 0.586818 3_1:+73759009 None:intergenic
TGTGGTGGTAGTGGAACTGT+TGG 0.587887 3_1:+73756194 None:intergenic
ACATTAATAGTATCAGCAAA+CGG 0.588740 3_1:-73756116 Msa0374330:CDS
TAATAGGTGCTTGGAAGAAG+GGG 0.593866 3_1:-73756319 Msa0374330:intron
GTTGTCGTCGTCCGAGTCTG+TGG 0.598775 3_1:+73756176 None:intergenic
AATGCCCAAAATGAAAGGGT+TGG 0.602173 3_1:-73756061 Msa0374330:CDS
GGAAGATGATGAATGAGAGT+GGG 0.604844 3_1:+73759534 None:intergenic
TTGATAGGATGCTTCTAGAG+AGG 0.609363 3_1:-73759326 Msa0374330:CDS
TAATAGTATCAGCAAACGGA+AGG 0.609687 3_1:-73756112 Msa0374330:CDS
ACAACCATTGCAGCTACAAG+AGG 0.610346 3_1:-73759001 Msa0374330:intron
AAATAAAATCCAATTGAAAG+GGG 0.615171 3_1:-73759751 Msa0374330:five_prime_UTR
TATTGCATGCCTGGGATGAG+TGG 0.615464 3_1:-73757821 Msa0374330:CDS
CAAAATGAAAGGGTTGGCGG+TGG 0.616336 3_1:-73756055 Msa0374330:CDS
TGATTTACTTAAAAGAGTCA+AGG 0.620876 3_1:-73757795 Msa0374330:intron
TTGCAATATCTAGACGACAA+AGG 0.621224 3_1:+73755843 None:intergenic
GAATGAGAGTGGGAAAAGAG+AGG 0.639186 3_1:+73759544 None:intergenic
ACATAAATTTAAGTGGCTAG+TGG 0.642603 3_1:+73755884 None:intergenic
GTCGTCGTCCGAGTCTGTGG+TGG 0.650795 3_1:+73756179 None:intergenic
TAATATAGAAGACTTTGTTG+AGG 0.651761 3_1:+73759047 None:intergenic
AAAATCGTACAAATTAAGAG+TGG 0.659476 3_1:-73756020 Msa0374330:three_prime_UTR
TGTTAAAACAGTTACCTGTG+TGG 0.666037 3_1:-73759133 Msa0374330:intron
CTTATCTCCAGAGTCCACAC+AGG 0.676893 3_1:+73759119 None:intergenic
GAGTAGTTGTACCAACGTGG+TGG 0.683701 3_1:-73759707 Msa0374330:five_prime_UTR
CTAGATTCTCTCCACCACGT+TGG 0.728914 3_1:+73759696 None:intergenic
AAAGAGTAGTTGTACCAACG+TGG 0.745673 3_1:-73759710 Msa0374330:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATATACATGTTATATA+TGG - chr3_1:73757096-73757115 Msa0374330:intron 10.0%
!!! ATATACATTTTTTTTTTTGA+AGG - chr3_1:73757335-73757354 Msa0374330:intron 10.0%
!!! AACATTAAATTTTTATGTTT+GGG - chr3_1:73757720-73757739 Msa0374330:intron 10.0%
!!! AAGTATTTAAGATATAATAA+AGG + chr3_1:73759165-73759184 None:intergenic 10.0%
!! ATTTAATTAACAACTTAATT+TGG - chr3_1:73759282-73759301 Msa0374330:intron 10.0%
!! TAATATATACATGTTATATA+TGG - chr3_1:73757096-73757115 Msa0374330:intron 10.0%
!!! ATATACATTTTTTTTTTTGA+AGG - chr3_1:73757335-73757354 Msa0374330:intron 10.0%
!!! AACATTAAATTTTTATGTTT+GGG - chr3_1:73757720-73757739 Msa0374330:intron 10.0%
!!! AAGTATTTAAGATATAATAA+AGG + chr3_1:73759165-73759184 None:intergenic 10.0%
!! ATTTAATTAACAACTTAATT+TGG - chr3_1:73759282-73759301 Msa0374330:intron 10.0%
!!! TTAGCTTTATTAATTTTATG+GGG + chr3_1:73756851-73756870 None:intergenic 15.0%
!!! CTTAGCTTTATTAATTTTAT+GGG + chr3_1:73756852-73756871 None:intergenic 15.0%
!!! ATATATATTCTCTTGTTTAT+AGG - chr3_1:73757454-73757473 Msa0374330:intron 15.0%
!!! GAACATTAAATTTTTATGTT+TGG - chr3_1:73757719-73757738 Msa0374330:intron 15.0%
!!! AGAAAATTAATTTTACTTCA+AGG - chr3_1:73758024-73758043 Msa0374330:intron 15.0%
!!! TTTGATATTTGATTTTTAAG+TGG + chr3_1:73758649-73758668 None:intergenic 15.0%
!!! TAAATTAAATCCTAACATTT+TGG - chr3_1:73758859-73758878 Msa0374330:intron 15.0%
!!! AAATTAAATCCTAACATTTT+GGG - chr3_1:73758860-73758879 Msa0374330:intron 15.0%
!! TCAAAAGAAGAAAAAATTAA+TGG + chr3_1:73758990-73759009 None:intergenic 15.0%
!!! TTAGCTTTATTAATTTTATG+GGG + chr3_1:73756851-73756870 None:intergenic 15.0%
!!! CTTAGCTTTATTAATTTTAT+GGG + chr3_1:73756852-73756871 None:intergenic 15.0%
!!! ATATATATTCTCTTGTTTAT+AGG - chr3_1:73757454-73757473 Msa0374330:intron 15.0%
!!! GAACATTAAATTTTTATGTT+TGG - chr3_1:73757719-73757738 Msa0374330:intron 15.0%
!!! AGAAAATTAATTTTACTTCA+AGG - chr3_1:73758024-73758043 Msa0374330:intron 15.0%
!!! TTTGATATTTGATTTTTAAG+TGG + chr3_1:73758649-73758668 None:intergenic 15.0%
!!! TAAATTAAATCCTAACATTT+TGG - chr3_1:73758859-73758878 Msa0374330:intron 15.0%
!!! AAATTAAATCCTAACATTTT+GGG - chr3_1:73758860-73758879 Msa0374330:intron 15.0%
!! TCAAAAGAAGAAAAAATTAA+TGG + chr3_1:73758990-73759009 None:intergenic 15.0%
!! TCAAATAAAATCCAATTGAA+AGG - chr3_1:73755872-73755891 Msa0374330:three_prime_UTR 20.0%
!! CAAATAAAATCCAATTGAAA+GGG - chr3_1:73755873-73755892 Msa0374330:three_prime_UTR 20.0%
!! AAATAAAATCCAATTGAAAG+GGG - chr3_1:73755874-73755893 Msa0374330:three_prime_UTR 20.0%
!!! GCTTAGCTTTATTAATTTTA+TGG + chr3_1:73756853-73756872 None:intergenic 20.0%
!! TGAATGAAAGTAATTTGATA+AGG + chr3_1:73757056-73757075 None:intergenic 20.0%
!! ATACATGTTATATATGGATA+TGG - chr3_1:73757102-73757121 Msa0374330:intron 20.0%
!! GTACTACATATATATGATAA+TGG - chr3_1:73757308-73757327 Msa0374330:intron 20.0%
!! GAAAAAAGAATACAATTCAA+TGG - chr3_1:73757506-73757525 Msa0374330:intron 20.0%
!!! TCTCTTTTTTAAACTTGAAT+AGG - chr3_1:73757896-73757915 Msa0374330:intron 20.0%
!!! TATACTTCTTTTTGAATTGT+TGG + chr3_1:73758304-73758323 None:intergenic 20.0%
!!! ACAATTCAAAAAGAAGTATA+AGG - chr3_1:73758304-73758323 Msa0374330:intron 20.0%
!!! CAATTCAAAAAGAAGTATAA+GGG - chr3_1:73758305-73758324 Msa0374330:intron 20.0%
!! AACTATTCAAAATACATACA+AGG - chr3_1:73758384-73758403 Msa0374330:intron 20.0%
!! ATGCAACAATTTAAAGATTT+GGG + chr3_1:73758519-73758538 None:intergenic 20.0%
!!! AGATAGATTTAGTTCATATA+TGG + chr3_1:73758824-73758843 None:intergenic 20.0%
!! ACAAAAAAAGAATAGATACA+TGG + chr3_1:73758963-73758982 None:intergenic 20.0%
!! AAATACTTCTTCAAAGAAAA+AGG - chr3_1:73759177-73759196 Msa0374330:intron 20.0%
!! CATTTGTACATAAATTTAAG+TGG + chr3_1:73759751-73759770 None:intergenic 20.0%
!! TCAAATAAAATCCAATTGAA+AGG - chr3_1:73755872-73755891 Msa0374330:three_prime_UTR 20.0%
!! CAAATAAAATCCAATTGAAA+GGG - chr3_1:73755873-73755892 Msa0374330:three_prime_UTR 20.0%
!! AAATAAAATCCAATTGAAAG+GGG - chr3_1:73755874-73755893 Msa0374330:three_prime_UTR 20.0%
!!! GCTTAGCTTTATTAATTTTA+TGG + chr3_1:73756853-73756872 None:intergenic 20.0%
!! TGAATGAAAGTAATTTGATA+AGG + chr3_1:73757056-73757075 None:intergenic 20.0%
!! ATACATGTTATATATGGATA+TGG - chr3_1:73757102-73757121 Msa0374330:intron 20.0%
!! GTACTACATATATATGATAA+TGG - chr3_1:73757308-73757327 Msa0374330:intron 20.0%
!! GAAAAAAGAATACAATTCAA+TGG - chr3_1:73757506-73757525 Msa0374330:intron 20.0%
!!! TCTCTTTTTTAAACTTGAAT+AGG - chr3_1:73757896-73757915 Msa0374330:intron 20.0%
!!! TATACTTCTTTTTGAATTGT+TGG + chr3_1:73758304-73758323 None:intergenic 20.0%
!!! ACAATTCAAAAAGAAGTATA+AGG - chr3_1:73758304-73758323 Msa0374330:intron 20.0%
!!! CAATTCAAAAAGAAGTATAA+GGG - chr3_1:73758305-73758324 Msa0374330:intron 20.0%
!! AACTATTCAAAATACATACA+AGG - chr3_1:73758384-73758403 Msa0374330:intron 20.0%
!! ATGCAACAATTTAAAGATTT+GGG + chr3_1:73758519-73758538 None:intergenic 20.0%
!!! AGATAGATTTAGTTCATATA+TGG + chr3_1:73758824-73758843 None:intergenic 20.0%
!! ACAAAAAAAGAATAGATACA+TGG + chr3_1:73758963-73758982 None:intergenic 20.0%
!! AAATACTTCTTCAAAGAAAA+AGG - chr3_1:73759177-73759196 Msa0374330:intron 20.0%
!! CATTTGTACATAAATTTAAG+TGG + chr3_1:73759751-73759770 None:intergenic 20.0%
!!! AGTAGCTTTATTCTATTAGT+GGG + chr3_1:73756039-73756058 None:intergenic 25.0%
!!! TAGTAGCTTTATTCTATTAG+TGG + chr3_1:73756040-73756059 None:intergenic 25.0%
! TATTCATCACCAAATTGATA+TGG - chr3_1:73756186-73756205 Msa0374330:CDS 25.0%
! TCCTAATAATTGAGATTGTA+CGG + chr3_1:73756374-73756393 None:intergenic 25.0%
!! AGAATTTTGTGTACTGAATT+TGG - chr3_1:73756437-73756456 Msa0374330:intron 25.0%
!!! TTGGTTAAGTAATTGTTTTG+TGG - chr3_1:73756456-73756475 Msa0374330:intron 25.0%
! TAATATAGAAGACTTTGTTG+AGG + chr3_1:73756581-73756600 None:intergenic 25.0%
!! AACTATCTTGAAAACTTTTG+AGG + chr3_1:73756678-73756697 None:intergenic 25.0%
!!! TTAGTTTTGTCCAGAAAAAA+AGG - chr3_1:73756728-73756747 Msa0374330:intron 25.0%
!!! AGCAAATATACCTTTTTTTC+TGG + chr3_1:73756741-73756760 None:intergenic 25.0%
! TAACAATTTCAACAGTCTAA+AGG + chr3_1:73756994-73757013 None:intergenic 25.0%
! ATGAAAGTAATTTGATAAGG+AGG + chr3_1:73757053-73757072 None:intergenic 25.0%
!!! ATGTTGATGAAGGTAATTTT+TGG + chr3_1:73757140-73757159 None:intergenic 25.0%
!! GGAATTATATATGTTGATGA+AGG + chr3_1:73757150-73757169 None:intergenic 25.0%
!!! CCTAACTGTATTTTTTTTAG+AGG + chr3_1:73757171-73757190 None:intergenic 25.0%
!! CCTCTAAAAAAAATACAGTT+AGG - chr3_1:73757168-73757187 Msa0374330:intron 25.0%
! CATATATGACTTATGATACA+TGG - chr3_1:73757394-73757413 Msa0374330:intron 25.0%
! AGCATACATTAAATCAGATT+AGG - chr3_1:73757484-73757503 Msa0374330:intron 25.0%
! CATGGATCAAAACAATAATT+AGG + chr3_1:73757588-73757607 None:intergenic 25.0%
!! AAATCTCTCTTTTGTGAAAA+AGG - chr3_1:73757663-73757682 Msa0374330:intron 25.0%
! TGATTTACTTAAAAGAGTCA+AGG - chr3_1:73757830-73757849 Msa0374330:CDS 25.0%
! TCAAGTTTAAAAAAGAGAGA+GGG + chr3_1:73757894-73757913 None:intergenic 25.0%
!! TTCAAGTTTAAAAAAGAGAG+AGG + chr3_1:73757895-73757914 None:intergenic 25.0%
!! AATTAATTTTACTTCAAGGC+TGG - chr3_1:73758028-73758047 Msa0374330:intron 25.0%
!! TGTGACTTTAAAGATAGTTA+CGG - chr3_1:73758148-73758167 Msa0374330:intron 25.0%
!! CATCCAATTTTATTAGACAT+AGG - chr3_1:73758255-73758274 Msa0374330:intron 25.0%
! TCTCCTATGTCTAATAAAAT+TGG + chr3_1:73758261-73758280 None:intergenic 25.0%
!!! TTGATTTAGAGTCTTTGTTT+TGG + chr3_1:73758342-73758361 None:intergenic 25.0%
! TAAATCAAGAATTGAGAAAG+AGG - chr3_1:73758354-73758373 Msa0374330:intron 25.0%
! AAATCAAGAATTGAGAAAGA+GGG - chr3_1:73758355-73758374 Msa0374330:intron 25.0%
! AACAATTTAAAGATTTGGGA+GGG + chr3_1:73758515-73758534 None:intergenic 25.0%
! CATGCAACAATTTAAAGATT+TGG + chr3_1:73758520-73758539 None:intergenic 25.0%
! TGGAATAAAAATCACTGAAA+TGG + chr3_1:73758559-73758578 None:intergenic 25.0%
!!! ATTTTTAAGTGGATCATAGT+TGG + chr3_1:73758638-73758657 None:intergenic 25.0%
! TAATTAATTGTAACTACCCA+AGG + chr3_1:73758733-73758752 None:intergenic 25.0%
! AGAAAGAGTAAGAAAGAAAA+AGG - chr3_1:73758884-73758903 Msa0374330:intron 25.0%
!! AACAACTTAATTTGGCTAAT+AGG - chr3_1:73759290-73759309 Msa0374330:intron 25.0%
!!! AAGAATTTTCAAGGGATTTT+AGG + chr3_1:73759393-73759412 None:intergenic 25.0%
! ACATTAATAGTATCAGCAAA+CGG - chr3_1:73759509-73759528 Msa0374330:five_prime_UTR 25.0%
! AAAATCGTACAAATTAAGAG+TGG - chr3_1:73759605-73759624 Msa0374330:five_prime_UTR 25.0%
!!! AGTAGCTTTATTCTATTAGT+GGG + chr3_1:73756039-73756058 None:intergenic 25.0%
!!! TAGTAGCTTTATTCTATTAG+TGG + chr3_1:73756040-73756059 None:intergenic 25.0%
! TATTCATCACCAAATTGATA+TGG - chr3_1:73756186-73756205 Msa0374330:CDS 25.0%
! TCCTAATAATTGAGATTGTA+CGG + chr3_1:73756374-73756393 None:intergenic 25.0%
!! AGAATTTTGTGTACTGAATT+TGG - chr3_1:73756437-73756456 Msa0374330:intron 25.0%
!!! TTGGTTAAGTAATTGTTTTG+TGG - chr3_1:73756456-73756475 Msa0374330:intron 25.0%
! TAATATAGAAGACTTTGTTG+AGG + chr3_1:73756581-73756600 None:intergenic 25.0%
!! AACTATCTTGAAAACTTTTG+AGG + chr3_1:73756678-73756697 None:intergenic 25.0%
!!! TTAGTTTTGTCCAGAAAAAA+AGG - chr3_1:73756728-73756747 Msa0374330:intron 25.0%
!!! AGCAAATATACCTTTTTTTC+TGG + chr3_1:73756741-73756760 None:intergenic 25.0%
! TAACAATTTCAACAGTCTAA+AGG + chr3_1:73756994-73757013 None:intergenic 25.0%
! ATGAAAGTAATTTGATAAGG+AGG + chr3_1:73757053-73757072 None:intergenic 25.0%
!!! ATGTTGATGAAGGTAATTTT+TGG + chr3_1:73757140-73757159 None:intergenic 25.0%
!! GGAATTATATATGTTGATGA+AGG + chr3_1:73757150-73757169 None:intergenic 25.0%
!!! CCTAACTGTATTTTTTTTAG+AGG + chr3_1:73757171-73757190 None:intergenic 25.0%
!! CCTCTAAAAAAAATACAGTT+AGG - chr3_1:73757168-73757187 Msa0374330:intron 25.0%
! CATATATGACTTATGATACA+TGG - chr3_1:73757394-73757413 Msa0374330:intron 25.0%
! AGCATACATTAAATCAGATT+AGG - chr3_1:73757484-73757503 Msa0374330:intron 25.0%
! CATGGATCAAAACAATAATT+AGG + chr3_1:73757588-73757607 None:intergenic 25.0%
!! AAATCTCTCTTTTGTGAAAA+AGG - chr3_1:73757663-73757682 Msa0374330:intron 25.0%
! TGATTTACTTAAAAGAGTCA+AGG - chr3_1:73757830-73757849 Msa0374330:CDS 25.0%
! TCAAGTTTAAAAAAGAGAGA+GGG + chr3_1:73757894-73757913 None:intergenic 25.0%
!! TTCAAGTTTAAAAAAGAGAG+AGG + chr3_1:73757895-73757914 None:intergenic 25.0%
!! AATTAATTTTACTTCAAGGC+TGG - chr3_1:73758028-73758047 Msa0374330:intron 25.0%
!! TGTGACTTTAAAGATAGTTA+CGG - chr3_1:73758148-73758167 Msa0374330:intron 25.0%
!! CATCCAATTTTATTAGACAT+AGG - chr3_1:73758255-73758274 Msa0374330:intron 25.0%
! TCTCCTATGTCTAATAAAAT+TGG + chr3_1:73758261-73758280 None:intergenic 25.0%
!!! TTGATTTAGAGTCTTTGTTT+TGG + chr3_1:73758342-73758361 None:intergenic 25.0%
! TAAATCAAGAATTGAGAAAG+AGG - chr3_1:73758354-73758373 Msa0374330:intron 25.0%
! AAATCAAGAATTGAGAAAGA+GGG - chr3_1:73758355-73758374 Msa0374330:intron 25.0%
! AACAATTTAAAGATTTGGGA+GGG + chr3_1:73758515-73758534 None:intergenic 25.0%
! CATGCAACAATTTAAAGATT+TGG + chr3_1:73758520-73758539 None:intergenic 25.0%
! TGGAATAAAAATCACTGAAA+TGG + chr3_1:73758559-73758578 None:intergenic 25.0%
!!! ATTTTTAAGTGGATCATAGT+TGG + chr3_1:73758638-73758657 None:intergenic 25.0%
! TAATTAATTGTAACTACCCA+AGG + chr3_1:73758733-73758752 None:intergenic 25.0%
! AGAAAGAGTAAGAAAGAAAA+AGG - chr3_1:73758884-73758903 Msa0374330:intron 25.0%
!! AACAACTTAATTTGGCTAAT+AGG - chr3_1:73759290-73759309 Msa0374330:intron 25.0%
!!! AAGAATTTTCAAGGGATTTT+AGG + chr3_1:73759393-73759412 None:intergenic 25.0%
! ACATTAATAGTATCAGCAAA+CGG - chr3_1:73759509-73759528 Msa0374330:five_prime_UTR 25.0%
! AAAATCGTACAAATTAAGAG+TGG - chr3_1:73759605-73759624 Msa0374330:five_prime_UTR 25.0%
!! CAAGATTTGTTTTTCCCATT+GGG + chr3_1:73755835-73755854 None:intergenic 30.0%
!! TCAAGATTTGTTTTTCCCAT+TGG + chr3_1:73755836-73755855 None:intergenic 30.0%
! TAGATGATAGTGTCATTGAT+AGG - chr3_1:73756284-73756303 Msa0374330:CDS 30.0%
AGATTGTACGGAAAAAATGT+TGG + chr3_1:73756362-73756381 None:intergenic 30.0%
TCCGTACAATCTCAATTATT+AGG - chr3_1:73756370-73756389 Msa0374330:intron 30.0%
!! GATAAGGCTTTGAAATATCT+TGG - chr3_1:73756523-73756542 Msa0374330:intron 30.0%
!! TATCTTGAAAACTTTTGAGG+AGG + chr3_1:73756675-73756694 None:intergenic 30.0%
! TCCTTTTTCCTTTCTTAGTT+AGG - chr3_1:73756926-73756945 Msa0374330:intron 30.0%
TCCTAACTAAGAAAGGAAAA+AGG + chr3_1:73756930-73756949 None:intergenic 30.0%
TCTTAAGTCCTAACTAAGAA+AGG + chr3_1:73756937-73756956 None:intergenic 30.0%
TTAGAAGAAAAAAACGCAGA+AGG + chr3_1:73756966-73756985 None:intergenic 30.0%
TTAGTAGTATTATGCTGAGT+GGG - chr3_1:73757011-73757030 Msa0374330:intron 30.0%
TAAACCAAAGCGACTTTATA+TGG - chr3_1:73757216-73757235 Msa0374330:intron 30.0%
TTTGTGAAAAAGGATACGTA+CGG - chr3_1:73757673-73757692 Msa0374330:intron 30.0%
AAAAAGAGAGAGGGAATTTA+GGG + chr3_1:73757885-73757904 None:intergenic 30.0%
AAAAAAGAGAGAGGGAATTT+AGG + chr3_1:73757886-73757905 None:intergenic 30.0%
!! AGTTTAATTTTCGCATCTTG+TGG - chr3_1:73758088-73758107 Msa0374330:intron 30.0%
!!! TTTAGAGTCTTTGTTTTGGT+GGG + chr3_1:73758338-73758357 None:intergenic 30.0%
!!! ATTTAGAGTCTTTGTTTTGG+TGG + chr3_1:73758339-73758358 None:intergenic 30.0%
! TTTTTCCTCAAAGAACTTGA+AGG + chr3_1:73758477-73758496 None:intergenic 30.0%
CAACAATTTAAAGATTTGGG+AGG + chr3_1:73758516-73758535 None:intergenic 30.0%
! TGATTTTTATTCCACGACAA+AGG - chr3_1:73758565-73758584 Msa0374330:intron 30.0%
!! TTATTTTTCATCCTTTGTCG+TGG + chr3_1:73758579-73758598 None:intergenic 30.0%
! TAGATGTAATTTTGTCGACA+AGG + chr3_1:73758672-73758691 None:intergenic 30.0%
ATGATGAAACATGAGGTTAT+GGG + chr3_1:73758707-73758726 None:intergenic 30.0%
TATGATGAAACATGAGGTTA+TGG + chr3_1:73758708-73758727 None:intergenic 30.0%
ACTTACATGCTAATTCTAGA+AGG + chr3_1:73759084-73759103 None:intergenic 30.0%
! ATTGATGCAGCATTAGATTT+TGG + chr3_1:73759231-73759250 None:intergenic 30.0%
! CTCATCAGAAGAATTTTCAA+GGG + chr3_1:73759401-73759420 None:intergenic 30.0%
ACATAAATTTAAGTGGCTAG+TGG + chr3_1:73759744-73759763 None:intergenic 30.0%
!! CAAGATTTGTTTTTCCCATT+GGG + chr3_1:73755835-73755854 None:intergenic 30.0%
!! TCAAGATTTGTTTTTCCCAT+TGG + chr3_1:73755836-73755855 None:intergenic 30.0%
! TAGATGATAGTGTCATTGAT+AGG - chr3_1:73756284-73756303 Msa0374330:CDS 30.0%
AGATTGTACGGAAAAAATGT+TGG + chr3_1:73756362-73756381 None:intergenic 30.0%
TCCGTACAATCTCAATTATT+AGG - chr3_1:73756370-73756389 Msa0374330:intron 30.0%
!! GATAAGGCTTTGAAATATCT+TGG - chr3_1:73756523-73756542 Msa0374330:intron 30.0%
!! TATCTTGAAAACTTTTGAGG+AGG + chr3_1:73756675-73756694 None:intergenic 30.0%
! TCCTTTTTCCTTTCTTAGTT+AGG - chr3_1:73756926-73756945 Msa0374330:intron 30.0%
TCCTAACTAAGAAAGGAAAA+AGG + chr3_1:73756930-73756949 None:intergenic 30.0%
TCTTAAGTCCTAACTAAGAA+AGG + chr3_1:73756937-73756956 None:intergenic 30.0%
TTAGAAGAAAAAAACGCAGA+AGG + chr3_1:73756966-73756985 None:intergenic 30.0%
TTAGTAGTATTATGCTGAGT+GGG - chr3_1:73757011-73757030 Msa0374330:intron 30.0%
TAAACCAAAGCGACTTTATA+TGG - chr3_1:73757216-73757235 Msa0374330:intron 30.0%
TTTGTGAAAAAGGATACGTA+CGG - chr3_1:73757673-73757692 Msa0374330:intron 30.0%
AAAAAGAGAGAGGGAATTTA+GGG + chr3_1:73757885-73757904 None:intergenic 30.0%
AAAAAAGAGAGAGGGAATTT+AGG + chr3_1:73757886-73757905 None:intergenic 30.0%
!! AGTTTAATTTTCGCATCTTG+TGG - chr3_1:73758088-73758107 Msa0374330:intron 30.0%
!!! TTTAGAGTCTTTGTTTTGGT+GGG + chr3_1:73758338-73758357 None:intergenic 30.0%
!!! ATTTAGAGTCTTTGTTTTGG+TGG + chr3_1:73758339-73758358 None:intergenic 30.0%
! TTTTTCCTCAAAGAACTTGA+AGG + chr3_1:73758477-73758496 None:intergenic 30.0%
CAACAATTTAAAGATTTGGG+AGG + chr3_1:73758516-73758535 None:intergenic 30.0%
! TGATTTTTATTCCACGACAA+AGG - chr3_1:73758565-73758584 Msa0374330:intron 30.0%
!! TTATTTTTCATCCTTTGTCG+TGG + chr3_1:73758579-73758598 None:intergenic 30.0%
! TAGATGTAATTTTGTCGACA+AGG + chr3_1:73758672-73758691 None:intergenic 30.0%
ATGATGAAACATGAGGTTAT+GGG + chr3_1:73758707-73758726 None:intergenic 30.0%
TATGATGAAACATGAGGTTA+TGG + chr3_1:73758708-73758727 None:intergenic 30.0%
ACTTACATGCTAATTCTAGA+AGG + chr3_1:73759084-73759103 None:intergenic 30.0%
! ATTGATGCAGCATTAGATTT+TGG + chr3_1:73759231-73759250 None:intergenic 30.0%
! CTCATCAGAAGAATTTTCAA+GGG + chr3_1:73759401-73759420 None:intergenic 30.0%
ACATAAATTTAAGTGGCTAG+TGG + chr3_1:73759744-73759763 None:intergenic 30.0%
! AAAAAACTGTAGTGGAACAG+TGG + chr3_1:73756006-73756025 None:intergenic 35.0%
CATGAGAGAAAAAACTGTAG+TGG + chr3_1:73756014-73756033 None:intergenic 35.0%
AAGCAAGCTCCATATCAATT+TGG + chr3_1:73756198-73756217 None:intergenic 35.0%
! AATTGATATGGAGCTTGCTT+TGG - chr3_1:73756198-73756217 Msa0374330:CDS 35.0%
!! TGTTCTTGCTTCAAGTTTTG+TGG + chr3_1:73756247-73756266 None:intergenic 35.0%
CTTAGAGATTCTTCATGCAA+AGG - chr3_1:73756325-73756344 Msa0374330:intron 35.0%
TTCTTCATGCAAAGGTAGTT+AGG - chr3_1:73756333-73756352 Msa0374330:intron 35.0%
TGTTAAAACAGTTACCTGTG+TGG - chr3_1:73756492-73756511 Msa0374330:intron 35.0%
AGTCAACACGATAAAATGGA+TGG + chr3_1:73756902-73756921 None:intergenic 35.0%
GCTTAGTCAACACGATAAAA+TGG + chr3_1:73756906-73756925 None:intergenic 35.0%
GTTAGTAGTATTATGCTGAG+TGG - chr3_1:73757010-73757029 Msa0374330:intron 35.0%
TAGTAGTATTATGCTGAGTG+GGG - chr3_1:73757012-73757031 Msa0374330:intron 35.0%
AACTCCATATAAAGTCGCTT+TGG + chr3_1:73757223-73757242 None:intergenic 35.0%
CAAGAATATAGTGTCTGCTA+TGG - chr3_1:73757617-73757636 Msa0374330:intron 35.0%
! ATCATGTGCACTATTTTGCA+GGG - chr3_1:73757753-73757772 Msa0374330:intron 35.0%
TCATCAAAGTAACCTCTTAG+AGG + chr3_1:73758436-73758455 None:intergenic 35.0%
AAGGTGTATGATGAAACATG+AGG + chr3_1:73758714-73758733 None:intergenic 35.0%
TCATGTTTCATCATACACCT+TGG - chr3_1:73758713-73758732 Msa0374330:intron 35.0%
CATGTTTCATCATACACCTT+GGG - chr3_1:73758714-73758733 Msa0374330:intron 35.0%
CTCTTTCTACCCAAAATGTT+AGG + chr3_1:73758872-73758891 None:intergenic 35.0%
TAATTTGGCTAATAGGTGCT+TGG - chr3_1:73759297-73759316 Msa0374330:intron 35.0%
TGCAAATCTGATAACTGAAG+AGG + chr3_1:73759352-73759371 None:intergenic 35.0%
!! TCAAGGGATTTTAGGAAGTA+TGG + chr3_1:73759385-73759404 None:intergenic 35.0%
! GCTCATCAGAAGAATTTTCA+AGG + chr3_1:73759402-73759421 None:intergenic 35.0%
TAATAGTATCAGCAAACGGA+AGG - chr3_1:73759513-73759532 Msa0374330:five_prime_UTR 35.0%
AGATCAATGCCCAAAATGAA+AGG - chr3_1:73759559-73759578 Msa0374330:five_prime_UTR 35.0%
GATCAATGCCCAAAATGAAA+GGG - chr3_1:73759560-73759579 Msa0374330:five_prime_UTR 35.0%
TGCAATATCTAGACGACAAA+GGG + chr3_1:73759784-73759803 None:intergenic 35.0%
TTGCAATATCTAGACGACAA+AGG + chr3_1:73759785-73759804 None:intergenic 35.0%
! AAAAAACTGTAGTGGAACAG+TGG + chr3_1:73756006-73756025 None:intergenic 35.0%
CATGAGAGAAAAAACTGTAG+TGG + chr3_1:73756014-73756033 None:intergenic 35.0%
AAGCAAGCTCCATATCAATT+TGG + chr3_1:73756198-73756217 None:intergenic 35.0%
! AATTGATATGGAGCTTGCTT+TGG - chr3_1:73756198-73756217 Msa0374330:CDS 35.0%
!! TGTTCTTGCTTCAAGTTTTG+TGG + chr3_1:73756247-73756266 None:intergenic 35.0%
CTTAGAGATTCTTCATGCAA+AGG - chr3_1:73756325-73756344 Msa0374330:intron 35.0%
TTCTTCATGCAAAGGTAGTT+AGG - chr3_1:73756333-73756352 Msa0374330:intron 35.0%
TGTTAAAACAGTTACCTGTG+TGG - chr3_1:73756492-73756511 Msa0374330:intron 35.0%
AGTCAACACGATAAAATGGA+TGG + chr3_1:73756902-73756921 None:intergenic 35.0%
GCTTAGTCAACACGATAAAA+TGG + chr3_1:73756906-73756925 None:intergenic 35.0%
GTTAGTAGTATTATGCTGAG+TGG - chr3_1:73757010-73757029 Msa0374330:intron 35.0%
TAGTAGTATTATGCTGAGTG+GGG - chr3_1:73757012-73757031 Msa0374330:intron 35.0%
AACTCCATATAAAGTCGCTT+TGG + chr3_1:73757223-73757242 None:intergenic 35.0%
CAAGAATATAGTGTCTGCTA+TGG - chr3_1:73757617-73757636 Msa0374330:intron 35.0%
! ATCATGTGCACTATTTTGCA+GGG - chr3_1:73757753-73757772 Msa0374330:intron 35.0%
TCATCAAAGTAACCTCTTAG+AGG + chr3_1:73758436-73758455 None:intergenic 35.0%
AAGGTGTATGATGAAACATG+AGG + chr3_1:73758714-73758733 None:intergenic 35.0%
TCATGTTTCATCATACACCT+TGG - chr3_1:73758713-73758732 Msa0374330:intron 35.0%
CATGTTTCATCATACACCTT+GGG - chr3_1:73758714-73758733 Msa0374330:intron 35.0%
CTCTTTCTACCCAAAATGTT+AGG + chr3_1:73758872-73758891 None:intergenic 35.0%
TAATTTGGCTAATAGGTGCT+TGG - chr3_1:73759297-73759316 Msa0374330:intron 35.0%
TGCAAATCTGATAACTGAAG+AGG + chr3_1:73759352-73759371 None:intergenic 35.0%
!! TCAAGGGATTTTAGGAAGTA+TGG + chr3_1:73759385-73759404 None:intergenic 35.0%
! GCTCATCAGAAGAATTTTCA+AGG + chr3_1:73759402-73759421 None:intergenic 35.0%
TAATAGTATCAGCAAACGGA+AGG - chr3_1:73759513-73759532 Msa0374330:five_prime_UTR 35.0%
AGATCAATGCCCAAAATGAA+AGG - chr3_1:73759559-73759578 Msa0374330:five_prime_UTR 35.0%
GATCAATGCCCAAAATGAAA+GGG - chr3_1:73759560-73759579 Msa0374330:five_prime_UTR 35.0%
TGCAATATCTAGACGACAAA+GGG + chr3_1:73759784-73759803 None:intergenic 35.0%
TTGCAATATCTAGACGACAA+AGG + chr3_1:73759785-73759804 None:intergenic 35.0%
TCTCTCATTCCCCTTTCAAT+TGG + chr3_1:73755886-73755905 None:intergenic 40.0%
AAAGAGTAGTTGTACCAACG+TGG - chr3_1:73755915-73755934 Msa0374330:three_prime_UTR 40.0%
GGAAGATGATGAATGAGAGT+GGG + chr3_1:73756094-73756113 None:intergenic 40.0%
GCAAGAACACTTTCATGTGT+TGG - chr3_1:73756258-73756277 Msa0374330:CDS 40.0%
! TTGATAGGATGCTTCTAGAG+AGG - chr3_1:73756299-73756318 Msa0374330:CDS 40.0%
ATTACCTCTTGTAGCTGCAA+TGG + chr3_1:73756631-73756650 None:intergenic 40.0%
!! CTTGAAAACTTTTGAGGAGG+AGG + chr3_1:73756672-73756691 None:intergenic 40.0%
TGAGTGGGGATATTGAACTT+TGG - chr3_1:73757026-73757045 Msa0374330:intron 40.0%
GGAGGATCTGAAAGAGAAAT+TGG + chr3_1:73757247-73757266 None:intergenic 40.0%
TTCAGATCCTCCATTCATCT+AGG - chr3_1:73757255-73757274 Msa0374330:intron 40.0%
ATATTCTTGCGAGGAGATCA+TGG + chr3_1:73757606-73757625 None:intergenic 40.0%
! CATCATGTGCACTATTTTGC+AGG - chr3_1:73757752-73757771 Msa0374330:intron 40.0%
ATGACAGATTATTGCATGCC+TGG - chr3_1:73757795-73757814 Msa0374330:intron 40.0%
TGACAGATTATTGCATGCCT+GGG - chr3_1:73757796-73757815 Msa0374330:CDS 40.0%
AGGGAATTTAGGGAAGATGT+CGG + chr3_1:73757875-73757894 None:intergenic 40.0%
AGTTCACTAGCACTTTGCAA+AGG - chr3_1:73757997-73758016 Msa0374330:intron 40.0%
AAAGAAAACTGCTTACGAGC+AGG - chr3_1:73758216-73758235 Msa0374330:intron 40.0%
TCAAAGTAACCTCTTAGAGG+TGG + chr3_1:73758433-73758452 None:intergenic 40.0%
! TTCCACCTTCAAGTTCTTTG+AGG - chr3_1:73758469-73758488 Msa0374330:intron 40.0%
TTCCTCAAAGAACTTGAAGG+TGG + chr3_1:73758474-73758493 None:intergenic 40.0%
TTGGAAAGATGTTCCAGTTG+TGG - chr3_1:73759038-73759057 Msa0374330:CDS 40.0%
TCTGATGACATAACCACAAC+TGG + chr3_1:73759054-73759073 None:intergenic 40.0%
CTAATAGGTGCTTGGAAGAA+GGG - chr3_1:73759305-73759324 Msa0374330:CDS 40.0%
TAATAGGTGCTTGGAAGAAG+GGG - chr3_1:73759306-73759325 Msa0374330:CDS 40.0%
!!! ATTTTGGGCATTGATCTCTC+TGG + chr3_1:73759556-73759575 None:intergenic 40.0%
AATGCCCAAAATGAAAGGGT+TGG - chr3_1:73759564-73759583 Msa0374330:five_prime_UTR 40.0%
TCTCTCATTCCCCTTTCAAT+TGG + chr3_1:73755886-73755905 None:intergenic 40.0%
AAAGAGTAGTTGTACCAACG+TGG - chr3_1:73755915-73755934 Msa0374330:three_prime_UTR 40.0%
GGAAGATGATGAATGAGAGT+GGG + chr3_1:73756094-73756113 None:intergenic 40.0%
GCAAGAACACTTTCATGTGT+TGG - chr3_1:73756258-73756277 Msa0374330:CDS 40.0%
! TTGATAGGATGCTTCTAGAG+AGG - chr3_1:73756299-73756318 Msa0374330:CDS 40.0%
ATTACCTCTTGTAGCTGCAA+TGG + chr3_1:73756631-73756650 None:intergenic 40.0%
!! CTTGAAAACTTTTGAGGAGG+AGG + chr3_1:73756672-73756691 None:intergenic 40.0%
TGAGTGGGGATATTGAACTT+TGG - chr3_1:73757026-73757045 Msa0374330:intron 40.0%
GGAGGATCTGAAAGAGAAAT+TGG + chr3_1:73757247-73757266 None:intergenic 40.0%
TTCAGATCCTCCATTCATCT+AGG - chr3_1:73757255-73757274 Msa0374330:intron 40.0%
ATATTCTTGCGAGGAGATCA+TGG + chr3_1:73757606-73757625 None:intergenic 40.0%
! CATCATGTGCACTATTTTGC+AGG - chr3_1:73757752-73757771 Msa0374330:intron 40.0%
ATGACAGATTATTGCATGCC+TGG - chr3_1:73757795-73757814 Msa0374330:intron 40.0%
TGACAGATTATTGCATGCCT+GGG - chr3_1:73757796-73757815 Msa0374330:CDS 40.0%
AGGGAATTTAGGGAAGATGT+CGG + chr3_1:73757875-73757894 None:intergenic 40.0%
AGTTCACTAGCACTTTGCAA+AGG - chr3_1:73757997-73758016 Msa0374330:intron 40.0%
AAAGAAAACTGCTTACGAGC+AGG - chr3_1:73758216-73758235 Msa0374330:intron 40.0%
TCAAAGTAACCTCTTAGAGG+TGG + chr3_1:73758433-73758452 None:intergenic 40.0%
! TTCCACCTTCAAGTTCTTTG+AGG - chr3_1:73758469-73758488 Msa0374330:intron 40.0%
TTCCTCAAAGAACTTGAAGG+TGG + chr3_1:73758474-73758493 None:intergenic 40.0%
TTGGAAAGATGTTCCAGTTG+TGG - chr3_1:73759038-73759057 Msa0374330:CDS 40.0%
TCTGATGACATAACCACAAC+TGG + chr3_1:73759054-73759073 None:intergenic 40.0%
CTAATAGGTGCTTGGAAGAA+GGG - chr3_1:73759305-73759324 Msa0374330:CDS 40.0%
TAATAGGTGCTTGGAAGAAG+GGG - chr3_1:73759306-73759325 Msa0374330:CDS 40.0%
!!! ATTTTGGGCATTGATCTCTC+TGG + chr3_1:73759556-73759575 None:intergenic 40.0%
AATGCCCAAAATGAAAGGGT+TGG - chr3_1:73759564-73759583 Msa0374330:five_prime_UTR 40.0%
! AACGTGGTGGAGAGAATCTA+GGG - chr3_1:73755931-73755950 Msa0374330:three_prime_UTR 45.0%
! ACTGTAGTGGAACAGTGGTA+TGG + chr3_1:73756001-73756020 None:intergenic 45.0%
GAATGAGAGTGGGAAAAGAG+AGG + chr3_1:73756084-73756103 None:intergenic 45.0%
GGGAAGATGATGAATGAGAG+TGG + chr3_1:73756095-73756114 None:intergenic 45.0%
TGCAATGGTTGTTGAAGAGG+AGG + chr3_1:73756616-73756635 None:intergenic 45.0%
AGCTGCAATGGTTGTTGAAG+AGG + chr3_1:73756619-73756638 None:intergenic 45.0%
ACAACCATTGCAGCTACAAG+AGG - chr3_1:73756624-73756643 Msa0374330:intron 45.0%
GTACGTACAGTGCAGTGAAA+AGG + chr3_1:73757564-73757583 None:intergenic 45.0%
GCAGACACTATATTCTTGCG+AGG + chr3_1:73757615-73757634 None:intergenic 45.0%
AAATCATAGCCACTCATCCC+AGG + chr3_1:73757816-73757835 None:intergenic 45.0%
GGAATTTAGGGAAGATGTCG+GGG + chr3_1:73757873-73757892 None:intergenic 45.0%
GGGAATTTAGGGAAGATGTC+GGG + chr3_1:73757874-73757893 None:intergenic 45.0%
AGCTAGAAACCACCTCTAAG+AGG - chr3_1:73758421-73758440 Msa0374330:intron 45.0%
GAAGGTGGAAGAGATTGTAG+AGG + chr3_1:73758459-73758478 None:intergenic 45.0%
GCTAATAGGTGCTTGGAAGA+AGG - chr3_1:73759304-73759323 Msa0374330:CDS 45.0%
! ACCGCCAACCCTTTCATTTT+GGG + chr3_1:73759571-73759590 None:intergenic 45.0%
! AACGTGGTGGAGAGAATCTA+GGG - chr3_1:73755931-73755950 Msa0374330:three_prime_UTR 45.0%
! ACTGTAGTGGAACAGTGGTA+TGG + chr3_1:73756001-73756020 None:intergenic 45.0%
GAATGAGAGTGGGAAAAGAG+AGG + chr3_1:73756084-73756103 None:intergenic 45.0%
GGGAAGATGATGAATGAGAG+TGG + chr3_1:73756095-73756114 None:intergenic 45.0%
TGCAATGGTTGTTGAAGAGG+AGG + chr3_1:73756616-73756635 None:intergenic 45.0%
AGCTGCAATGGTTGTTGAAG+AGG + chr3_1:73756619-73756638 None:intergenic 45.0%
ACAACCATTGCAGCTACAAG+AGG - chr3_1:73756624-73756643 Msa0374330:intron 45.0%
GTACGTACAGTGCAGTGAAA+AGG + chr3_1:73757564-73757583 None:intergenic 45.0%
GCAGACACTATATTCTTGCG+AGG + chr3_1:73757615-73757634 None:intergenic 45.0%
AAATCATAGCCACTCATCCC+AGG + chr3_1:73757816-73757835 None:intergenic 45.0%
GGAATTTAGGGAAGATGTCG+GGG + chr3_1:73757873-73757892 None:intergenic 45.0%
GGGAATTTAGGGAAGATGTC+GGG + chr3_1:73757874-73757893 None:intergenic 45.0%
AGCTAGAAACCACCTCTAAG+AGG - chr3_1:73758421-73758440 Msa0374330:intron 45.0%
GAAGGTGGAAGAGATTGTAG+AGG + chr3_1:73758459-73758478 None:intergenic 45.0%
GCTAATAGGTGCTTGGAAGA+AGG - chr3_1:73759304-73759323 Msa0374330:CDS 45.0%
! ACCGCCAACCCTTTCATTTT+GGG + chr3_1:73759571-73759590 None:intergenic 45.0%
!!! TTTATTTTATATATTTTGAA+TGG - chr3_1:73758172-73758191 Msa0374330:intron 5.0%
!!! TTTATTTTATATATTTTGAA+TGG - chr3_1:73758172-73758191 Msa0374330:intron 5.0%
GAGTAGTTGTACCAACGTGG+TGG - chr3_1:73755918-73755937 Msa0374330:three_prime_UTR 50.0%
CTAGATTCTCTCCACCACGT+TGG + chr3_1:73755932-73755951 None:intergenic 50.0%
! CAACGTGGTGGAGAGAATCT+AGG - chr3_1:73755930-73755949 Msa0374330:three_prime_UTR 50.0%
TGAGAGTGGGAAAAGAGAGG+TGG + chr3_1:73756081-73756100 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr3_1:73756115-73756134 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr3_1:73756116-73756135 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr3_1:73756115-73756134 None:intergenic 50.0%
ACAGTTACCTGTGTGGACTC+TGG - chr3_1:73756499-73756518 Msa0374330:intron 50.0%
CTTATCTCCAGAGTCCACAC+AGG + chr3_1:73756509-73756528 None:intergenic 50.0%
! CTGTGTGGACTCTGGAGATA+AGG - chr3_1:73756507-73756526 Msa0374330:intron 50.0%
TCCTCCATTCATCTAGGTCG+CGG - chr3_1:73757261-73757280 Msa0374330:intron 50.0%
TATTGCATGCCTGGGATGAG+TGG - chr3_1:73757804-73757823 Msa0374330:CDS 50.0%
ACACTGCTTACTGCACTGCA+GGG - chr3_1:73759009-73759028 Msa0374330:CDS 50.0%
!! TGTGGTGGTAGTGGAACTGT+TGG + chr3_1:73759434-73759453 None:intergenic 50.0%
TTCCACTACCACCACAGACT+CGG - chr3_1:73759438-73759457 Msa0374330:exon 50.0%
! ATTGATCTCTCTGGAGGCTC+AGG + chr3_1:73759547-73759566 None:intergenic 50.0%
!! TTGGGCATTGATCTCTCTGG+AGG + chr3_1:73759553-73759572 None:intergenic 50.0%
GCCCAAAATGAAAGGGTTGG+CGG - chr3_1:73759567-73759586 Msa0374330:five_prime_UTR 50.0%
! CACCGCCAACCCTTTCATTT+TGG + chr3_1:73759572-73759591 None:intergenic 50.0%
! CAAAATGAAAGGGTTGGCGG+TGG - chr3_1:73759570-73759589 Msa0374330:five_prime_UTR 50.0%
GAGTAGTTGTACCAACGTGG+TGG - chr3_1:73755918-73755937 Msa0374330:three_prime_UTR 50.0%
CTAGATTCTCTCCACCACGT+TGG + chr3_1:73755932-73755951 None:intergenic 50.0%
! CAACGTGGTGGAGAGAATCT+AGG - chr3_1:73755930-73755949 Msa0374330:three_prime_UTR 50.0%
TGAGAGTGGGAAAAGAGAGG+TGG + chr3_1:73756081-73756100 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr3_1:73756115-73756134 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr3_1:73756116-73756135 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr3_1:73756115-73756134 None:intergenic 50.0%
ACAGTTACCTGTGTGGACTC+TGG - chr3_1:73756499-73756518 Msa0374330:intron 50.0%
CTTATCTCCAGAGTCCACAC+AGG + chr3_1:73756509-73756528 None:intergenic 50.0%
! CTGTGTGGACTCTGGAGATA+AGG - chr3_1:73756507-73756526 Msa0374330:intron 50.0%
TCCTCCATTCATCTAGGTCG+CGG - chr3_1:73757261-73757280 Msa0374330:intron 50.0%
TATTGCATGCCTGGGATGAG+TGG - chr3_1:73757804-73757823 Msa0374330:CDS 50.0%
ACACTGCTTACTGCACTGCA+GGG - chr3_1:73759009-73759028 Msa0374330:CDS 50.0%
!! TGTGGTGGTAGTGGAACTGT+TGG + chr3_1:73759434-73759453 None:intergenic 50.0%
TTCCACTACCACCACAGACT+CGG - chr3_1:73759438-73759457 Msa0374330:exon 50.0%
! ATTGATCTCTCTGGAGGCTC+AGG + chr3_1:73759547-73759566 None:intergenic 50.0%
!! TTGGGCATTGATCTCTCTGG+AGG + chr3_1:73759553-73759572 None:intergenic 50.0%
GCCCAAAATGAAAGGGTTGG+CGG - chr3_1:73759567-73759586 Msa0374330:five_prime_UTR 50.0%
! CACCGCCAACCCTTTCATTT+TGG + chr3_1:73759572-73759591 None:intergenic 50.0%
! CAAAATGAAAGGGTTGGCGG+TGG - chr3_1:73759570-73759589 Msa0374330:five_prime_UTR 50.0%
TCCGCGACCTAGATGAATGG+AGG + chr3_1:73757265-73757284 None:intergenic 55.0%
GCATCCGCGACCTAGATGAA+TGG + chr3_1:73757268-73757287 None:intergenic 55.0%
GACACTGCTTACTGCACTGC+AGG - chr3_1:73759008-73759027 Msa0374330:CDS 55.0%
CTGCACTGCAGGGATCTTCT+TGG - chr3_1:73759019-73759038 Msa0374330:CDS 55.0%
! AATGAAAGGGTTGGCGGTGG+TGG - chr3_1:73759573-73759592 Msa0374330:five_prime_UTR 55.0%
TCCGCGACCTAGATGAATGG+AGG + chr3_1:73757265-73757284 None:intergenic 55.0%
GCATCCGCGACCTAGATGAA+TGG + chr3_1:73757268-73757287 None:intergenic 55.0%
GACACTGCTTACTGCACTGC+AGG - chr3_1:73759008-73759027 Msa0374330:CDS 55.0%
CTGCACTGCAGGGATCTTCT+TGG - chr3_1:73759019-73759038 Msa0374330:CDS 55.0%
! AATGAAAGGGTTGGCGGTGG+TGG - chr3_1:73759573-73759592 Msa0374330:five_prime_UTR 55.0%
GTCCGAGTCTGTGGTGGTAG+TGG + chr3_1:73759443-73759462 None:intergenic 60.0%
GTTGTCGTCGTCCGAGTCTG+TGG + chr3_1:73759452-73759471 None:intergenic 60.0%
! CTCTGGAGGCTCAGGAGACA+TGG + chr3_1:73759539-73759558 None:intergenic 60.0%
GTCCGAGTCTGTGGTGGTAG+TGG + chr3_1:73759443-73759462 None:intergenic 60.0%
GTTGTCGTCGTCCGAGTCTG+TGG + chr3_1:73759452-73759471 None:intergenic 60.0%
! CTCTGGAGGCTCAGGAGACA+TGG + chr3_1:73759539-73759558 None:intergenic 60.0%
GTCGTCGTCCGAGTCTGTGG+TGG + chr3_1:73759449-73759468 None:intergenic 65.0%
GTCGTCGTCCGAGTCTGTGG+TGG + chr3_1:73759449-73759468 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73755827 73759820 73755827 ID=Msa0374330;Name=Msa0374330
chr3_1 mRNA 73755827 73759820 73755827 ID=Msa0374330-mRNA-1;Parent=Msa0374330;Name=Msa0374330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=378|1|1|1|1|1|5|220|239
chr3_1 exon 73755827 73756335 73755827 ID=Msa0374330-mRNA-1:exon:16833;Parent=Msa0374330-mRNA-1
chr3_1 exon 73756550 73756617 73756550 ID=Msa0374330-mRNA-1:exon:16832;Parent=Msa0374330-mRNA-1
chr3_1 exon 73757796 73757873 73757796 ID=Msa0374330-mRNA-1:exon:16831;Parent=Msa0374330-mRNA-1
chr3_1 exon 73759002 73759144 73759002 ID=Msa0374330-mRNA-1:exon:16830;Parent=Msa0374330-mRNA-1
chr3_1 exon 73759301 73759820 73759301 ID=Msa0374330-mRNA-1:exon:16829;Parent=Msa0374330-mRNA-1
chr3_1 five_prime_UTR 73759443 73759820 73759443 ID=Msa0374330-mRNA-1:five_prime_utr;Parent=Msa0374330-mRNA-1
chr3_1 CDS 73759301 73759442 73759301 ID=Msa0374330-mRNA-1:cds;Parent=Msa0374330-mRNA-1
chr3_1 CDS 73759002 73759144 73759002 ID=Msa0374330-mRNA-1:cds;Parent=Msa0374330-mRNA-1
chr3_1 CDS 73757796 73757873 73757796 ID=Msa0374330-mRNA-1:cds;Parent=Msa0374330-mRNA-1
chr3_1 CDS 73756550 73756617 73756550 ID=Msa0374330-mRNA-1:cds;Parent=Msa0374330-mRNA-1
chr3_1 CDS 73756047 73756335 73756047 ID=Msa0374330-mRNA-1:cds;Parent=Msa0374330-mRNA-1
chr3_1 three_prime_UTR 73755827 73756046 73755827 ID=Msa0374330-mRNA-1:three_prime_utr;Parent=Msa0374330-mRNA-1
Gene Sequence

>Msa0374330

ATGGAGCTTGCTTTGGATAGTAGAAAATTACAATTACAACCACAAAACTTGAAGCAAGAACACTTTCATGTGTTGGCTGTAGATGATAGTGTCATTGATAGGATGCTTCTAGAGAGGCTTCTTAGAGATTCTTCATGCAAAGTTACCTGTGTGGACTCTGGAGATAAGGCTTTGAAATATCTTGGATTGAATATTGATGAAATTGATAATAATTCTTCCTCAACAAAGTCTTCTATATTAGAATCATCATCTCCTCCTCTTCAACAACCATTGCAGCTACAAGAGGGAAGCAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTTAAAAGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGGTTATGTCATCAGAAAATGTACCTTCTAGAATTAGCATGTGCTTGGAAGAAGGGGCAGAAGAGTTTCTAATGAAGCCTCTTCAGTTATCAGATTTGCAGAAGCTTCAACCATACTTCCTAAAATCCCTTGAAAATTCTTCTGATGAGCAAGAATCTGCCAACAGTTCCACTACCACCACAGACTCGGACGACGACAACGATCTCATCGACAGCAACAATAACAATAATGATGATAACATTAATAGTATCAGCAAACGGAAGGCCATGTCTCCTGAGCCTCCAGAGAGATCAATGCCCAAAATGAAAGGGTTGGCGGTGGTGGTGTAA

Protein sequence

>Msa0374330

MELALDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEIDNNSSSTKSSILESSSPPLQQPLQLQEGSKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRISMCLEEGAEEFLMKPLQLSDLQKLQPYFLKSLENSSDEQESANSSTTTTDSDDDNDLIDSNNNNNDDNINSISKRKAMSPEPPERSMPKMKGLAVVV*