Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456730 | XP_003596520.1 | 95.614 | 114 | 5 | 0 | 40 | 153 | 1 | 114 | 1.24e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456730 | sp|Q9LSQ6|PBP1_ARATH | 56.842 | 95 | 39 | 2 | 48 | 140 | 19 | 113 | 1.68e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456730 | Q2HVR3 | 95.614 | 114 | 5 | 0 | 40 | 153 | 1 | 114 | 5.90e-72 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa1456730 | 0.829541 | 4.858050e-55 | -8.615850e-47 |
| Msa0015710 | Msa1456730 | 0.800647 | 1.306284e-48 | -8.615850e-47 |
| Msa0055450 | Msa1456730 | 0.813042 | 3.126836e-51 | -8.615850e-47 |
| Msa1345420 | Msa1456730 | 0.802303 | 5.981054e-49 | -8.615850e-47 |
| Msa1431850 | Msa1456730 | 0.804534 | 2.063277e-49 | -8.615850e-47 |
| Msa1435480 | Msa1456730 | 0.811113 | 8.233847e-51 | -8.615850e-47 |
| Msa0669840 | Msa1456730 | 0.822993 | 1.759018e-53 | -8.615850e-47 |
| Msa0725860 | Msa1456730 | 0.856610 | 2.862913e-62 | -8.615850e-47 |
| Msa0786040 | Msa1456730 | 0.819103 | 1.384794e-52 | -8.615850e-47 |
| Msa0819900 | Msa1456730 | 0.812839 | 3.464956e-51 | -8.615850e-47 |
| Msa0823400 | Msa1456730 | 0.803752 | 3.000114e-49 | -8.615850e-47 |
| Msa0124130 | Msa1456730 | 0.847648 | 1.012293e-59 | -8.615850e-47 |
| Msa0149140 | Msa1456730 | 0.842007 | 3.362923e-58 | -8.615850e-47 |
| Msa1228190 | Msa1456730 | 0.841630 | 4.228598e-58 | -8.615850e-47 |
| Msa1271260 | Msa1456730 | 0.846771 | 1.761385e-59 | -8.615850e-47 |
| Msa0423100 | Msa1456730 | 0.816081 | 6.646633e-52 | -8.615850e-47 |
| Msa0999310 | Msa1456730 | 0.849582 | 2.947742e-60 | -8.615850e-47 |
| Msa0999340 | Msa1456730 | 0.827689 | 1.361508e-54 | -8.615850e-47 |
| Msa0999350 | Msa1456730 | 0.819521 | 1.111984e-52 | -8.615850e-47 |
| Msa0999390 | Msa1456730 | 0.809125 | 2.208919e-50 | -8.615850e-47 |
| Msa0999400 | Msa1456730 | 0.808839 | 2.542263e-50 | -8.615850e-47 |
| Msa1001880 | Msa1456730 | 0.848209 | 7.090747e-60 | -8.615850e-47 |
| Msa0322860 | Msa1456730 | 0.821527 | 3.850122e-53 | -8.615850e-47 |
| Msa0359250 | Msa1456730 | 0.800662 | 1.297216e-48 | -8.615850e-47 |
| Msa0520510 | Msa1456730 | 0.805633 | 1.215030e-49 | -8.615850e-47 |
| Msa0546830 | Msa1456730 | 0.818875 | 1.560048e-52 | -8.615850e-47 |
| Msa0591800 | Msa1456730 | 0.844998 | 5.341119e-59 | -8.615850e-47 |
| Msa0845940 | Msa1456730 | 0.800667 | 1.294537e-48 | -8.615850e-47 |
| Msa0860170 | Msa1456730 | 0.832549 | 8.874917e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456730 | MtrunA17_Chr2g0318801 | 95.614 | 114 | 5 | 0 | 40 | 153 | 1 | 114 | 1.14e-75 | 221 |
| Msa1456730 | MtrunA17_Chr2g0318791 | 88.596 | 114 | 13 | 0 | 40 | 153 | 1 | 114 | 2.95e-67 | 199 |
| Msa1456730 | MtrunA17_Chr2g0318761 | 85.321 | 109 | 16 | 0 | 45 | 153 | 2 | 110 | 1.10e-64 | 193 |
| Msa1456730 | MtrunA17_Chr2g0280881 | 63.830 | 94 | 33 | 1 | 48 | 140 | 14 | 107 | 3.72e-35 | 118 |
| Msa1456730 | MtrunA17_Chr2g0318861 | 60.417 | 96 | 37 | 1 | 48 | 142 | 10 | 105 | 4.56e-34 | 115 |
| Msa1456730 | MtrunA17_Chr8g0361421 | 61.458 | 96 | 36 | 1 | 48 | 142 | 11 | 106 | 4.60e-34 | 115 |
| Msa1456730 | MtrunA17_Chr2g0323211 | 56.122 | 98 | 42 | 1 | 41 | 137 | 3 | 100 | 5.93e-32 | 110 |
| Msa1456730 | MtrunA17_Chr4g0023231 | 59.341 | 91 | 36 | 1 | 48 | 137 | 6 | 96 | 3.11e-30 | 105 |
| Msa1456730 | MtrunA17_Chr8g0346481 | 53.191 | 94 | 43 | 1 | 45 | 137 | 16 | 109 | 3.52e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456730 | AT5G54490.1 | 56.842 | 95 | 39 | 2 | 48 | 140 | 19 | 113 | 1.71e-31 | 109 |
| Msa1456730 | AT4G27280.1 | 55.208 | 96 | 41 | 2 | 47 | 140 | 18 | 113 | 4.32e-29 | 103 |
| Msa1456730 | AT2G46600.1 | 44.828 | 116 | 58 | 2 | 23 | 137 | 2 | 112 | 1.39e-25 | 95.1 |
Find 33 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACGGGTTTCATTTGCTTA+TGG | 0.204248 | tig0037710:-6103 | Msa1456730:CDS |
| CCATCCATGGTTGCGAGTTT+AGG | 0.278334 | tig0037710:-6153 | Msa1456730:CDS |
| TTAGGAGCAGAAGCATTTAT+AGG | 0.308592 | tig0037710:-6135 | Msa1456730:CDS |
| TGATGTTCCTAAGATGAAAA+TGG | 0.314622 | tig0037710:-6580 | Msa1456730:CDS |
| CATGCTAATGGAAGGTGATT+TGG | 0.335601 | tig0037710:-5992 | Msa1456730:CDS |
| AAAATATGCACAAATCTTCA+AGG | 0.428589 | tig0037710:-5892 | Msa1456730:CDS |
| TAGGTTGAGTCCATGTTTAA+TGG | 0.441618 | tig0037710:-5923 | Msa1456730:CDS |
| AAATGGTAATAATTGATTGT+AGG | 0.474579 | tig0037710:-6563 | Msa1456730:CDS |
| CCTAAACTCGCAACCATGGA+TGG | 0.475656 | tig0037710:+6153 | Msa1456730:intergenic |
| CACAAGTTTCCACATGGAGT+TGG | 0.491047 | tig0037710:-6205 | Msa1456730:CDS |
| AAGATGAATTGTTTCATGCT+TGG | 0.497368 | tig0037710:-6045 | Msa1456730:CDS |
| TGAGGACTACTTTCCATCCA+TGG | 0.498192 | tig0037710:-6166 | Msa1456730:CDS |
| TGAGCTCGTGTACATGCTAA+TGG | 0.499730 | tig0037710:-6004 | Msa1456730:CDS |
| ATTGATTGTAGGAGTAATGA+AGG | 0.507954 | tig0037710:-6552 | Msa1456730:CDS |
| ATGAGAATGCAAAACTCCAT+TGG | 0.509723 | tig0037710:+5949 | Msa1456730:intergenic |
| GAATTGTTTCATGCTTGGTA+TGG | 0.522428 | tig0037710:-6040 | Msa1456730:CDS |
| TTGAGTCCATGTTTAATGGA+TGG | 0.531601 | tig0037710:-5919 | Msa1456730:CDS |
| TTTATAGGTGAACTTTGCTA+CGG | 0.531654 | tig0037710:-6120 | Msa1456730:CDS |
| TTATAGGTGAACTTTGCTAC+GGG | 0.538698 | tig0037710:-6119 | Msa1456730:CDS |
| TTTGCTTATGGATGTCAACA+AGG | 0.557910 | tig0037710:-6091 | Msa1456730:CDS |
| TCATGCTTGGTATGGAGGTG+AGG | 0.562351 | tig0037710:-6032 | Msa1456730:CDS |
| CATGCTTGGTATGGAGGTGA+GGG | 0.564464 | tig0037710:-6031 | Msa1456730:CDS |
| AGATGGTGCTTTAAATCCAA+TGG | 0.565219 | tig0037710:-5965 | Msa1456730:CDS |
| TTGTTTCATGCTTGGTATGG+AGG | 0.565973 | tig0037710:-6037 | Msa1456730:CDS |
| TGCTCCTAAACTCGCAACCA+TGG | 0.581169 | tig0037710:+6149 | Msa1456730:intergenic |
| GAGTGTCATCACATTAACAT+TGG | 0.590328 | tig0037710:+5862 | Msa1456730:intergenic |
| TTCACTCACAAGTTTCCACA+TGG | 0.601660 | tig0037710:-6211 | Msa1456730:CDS |
| TTAGGTCCATCCATTAAACA+TGG | 0.608146 | tig0037710:+5913 | Msa1456730:intergenic |
| GAAGGTGATTTGGATGGAGA+TGG | 0.627275 | tig0037710:-5982 | Msa1456730:CDS |
| TATCAAAATCCAACTCCATG+TGG | 0.653461 | tig0037710:+6196 | Msa1456730:intergenic |
| TTGCTTATGGATGTCAACAA+GGG | 0.661501 | tig0037710:-6090 | Msa1456730:CDS |
| CTAATGGAAGGTGATTTGGA+TGG | 0.674005 | tig0037710:-5988 | Msa1456730:CDS |
| CTCGTGTACATGCTAATGGA+AGG | 0.692064 | tig0037710:-6000 | Msa1456730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTACCATTTTCATCTT+AGG | + | tig0037710:5900-5919 | Msa1456730:intergenic | 20.0% |
| !! | AAATGGTAATAATTGATTGT+AGG | - | tig0037710:5907-5926 | Msa1456730:CDS | 20.0% |
| !!! | AAATCTAATTTTTCTCTGAT+AGG | - | tig0037710:6067-6086 | Msa1456730:CDS | 20.0% |
| !!! | AATCTAATTTTTCTCTGATA+GGG | - | tig0037710:6068-6087 | Msa1456730:CDS | 20.0% |
| !!! | ATTATTACCATTTTCATCTT+AGG | + | tig0037710:5900-5919 | Msa1456730:intergenic | 20.0% |
| !! | AAATGGTAATAATTGATTGT+AGG | - | tig0037710:5907-5926 | Msa1456730:CDS | 20.0% |
| !!! | AAATCTAATTTTTCTCTGAT+AGG | - | tig0037710:6067-6086 | Msa1456730:CDS | 20.0% |
| !!! | AATCTAATTTTTCTCTGATA+GGG | - | tig0037710:6068-6087 | Msa1456730:CDS | 20.0% |
| !! | ATCTAATTTTTCTCTGATAG+GGG | - | tig0037710:6069-6088 | Msa1456730:CDS | 25.0% |
| !! | TGAAGATTTGTGCATATTTT+AGG | + | tig0037710:6578-6597 | Msa1456730:intergenic | 25.0% |
| ! | AAAATATGCACAAATCTTCA+AGG | - | tig0037710:6578-6597 | Msa1456730:CDS | 25.0% |
| !! | ATCTAATTTTTCTCTGATAG+GGG | - | tig0037710:6069-6088 | Msa1456730:CDS | 25.0% |
| !! | TGAAGATTTGTGCATATTTT+AGG | + | tig0037710:6578-6597 | Msa1456730:intergenic | 25.0% |
| ! | AAAATATGCACAAATCTTCA+AGG | - | tig0037710:6578-6597 | Msa1456730:CDS | 25.0% |
| TGATGTTCCTAAGATGAAAA+TGG | - | tig0037710:5890-5909 | Msa1456730:CDS | 30.0% | |
| ATTGATTGTAGGAGTAATGA+AGG | - | tig0037710:5918-5937 | Msa1456730:CDS | 30.0% | |
| TGATGTTCCTAAGATGAAAA+TGG | - | tig0037710:5890-5909 | Msa1456730:CDS | 30.0% | |
| TGATGTTCCTAAGATGAAAA+TGG | - | tig0037710:5890-5909 | Msa1456730:CDS | 30.0% | |
| ! | TCAGTTACCATTTTCATCTT+AGG | + | tig0037710:6026-6045 | Msa1456730:intergenic | 30.0% |
| !! | ATTATTAGCTTGTGCTAGAA+GGG | + | tig0037710:6197-6216 | Msa1456730:intergenic | 30.0% |
| !! | AATTATTAGCTTGTGCTAGA+AGG | + | tig0037710:6198-6217 | Msa1456730:intergenic | 30.0% |
| !! | GGATTTTGATATGGATTTTG+AGG | - | tig0037710:6286-6305 | Msa1456730:intron | 30.0% |
| TTTATAGGTGAACTTTGCTA+CGG | - | tig0037710:6350-6369 | Msa1456730:intron | 30.0% | |
| AAGATGAATTGTTTCATGCT+TGG | - | tig0037710:6425-6444 | Msa1456730:intron | 30.0% | |
| ! | AGTTTTGCATTCTCATGTTT+AGG | - | tig0037710:6528-6547 | Msa1456730:intron | 30.0% |
| TGATGTTCCTAAGATGAAAA+TGG | - | tig0037710:5890-5909 | Msa1456730:CDS | 30.0% | |
| ATTGATTGTAGGAGTAATGA+AGG | - | tig0037710:5918-5937 | Msa1456730:CDS | 30.0% | |
| TGATGTTCCTAAGATGAAAA+TGG | - | tig0037710:5890-5909 | Msa1456730:CDS | 30.0% | |
| TGATGTTCCTAAGATGAAAA+TGG | - | tig0037710:5890-5909 | Msa1456730:CDS | 30.0% | |
| ! | TCAGTTACCATTTTCATCTT+AGG | + | tig0037710:6026-6045 | Msa1456730:intergenic | 30.0% |
| !! | ATTATTAGCTTGTGCTAGAA+GGG | + | tig0037710:6197-6216 | Msa1456730:intergenic | 30.0% |
| !! | AATTATTAGCTTGTGCTAGA+AGG | + | tig0037710:6198-6217 | Msa1456730:intergenic | 30.0% |
| !! | GGATTTTGATATGGATTTTG+AGG | - | tig0037710:6286-6305 | Msa1456730:intron | 30.0% |
| TTTATAGGTGAACTTTGCTA+CGG | - | tig0037710:6350-6369 | Msa1456730:intron | 30.0% | |
| AAGATGAATTGTTTCATGCT+TGG | - | tig0037710:6425-6444 | Msa1456730:intron | 30.0% | |
| ! | AGTTTTGCATTCTCATGTTT+AGG | - | tig0037710:6528-6547 | Msa1456730:intron | 30.0% |
| ! | TCAGCTACCATTTTCATCTT+AGG | + | tig0037710:5964-5983 | Msa1456730:intergenic | 35.0% |
| TGAAAATGGTAGCTGATTGT+AGG | - | tig0037710:5968-5987 | Msa1456730:CDS | 35.0% | |
| CTGATTGTAGGAGTAAATGA+AGG | - | tig0037710:5980-5999 | Msa1456730:CDS | 35.0% | |
| ATATTACCCTCAATTCGTCA+AGG | - | tig0037710:6093-6112 | Msa1456730:CDS | 35.0% | |
| TATTACCCTCAATTCGTCAA+GGG | - | tig0037710:6094-6113 | Msa1456730:CDS | 35.0% | |
| ATTATCCCTTGACGAATTGA+GGG | + | tig0037710:6102-6121 | Msa1456730:intergenic | 35.0% | |
| TTGCTAGGAACAATGTGAAA+GGG | + | tig0037710:6225-6244 | Msa1456730:intergenic | 35.0% | |
| AACTTCAAGTAGAAGTTGCT+AGG | + | tig0037710:6240-6259 | Msa1456730:intergenic | 35.0% | |
| TATCAAAATCCAACTCCATG+TGG | + | tig0037710:6277-6296 | Msa1456730:intergenic | 35.0% | |
| !! | CATGGAGTTGGATTTTGATA+TGG | - | tig0037710:6277-6296 | Msa1456730:intron | 35.0% |
| !! | TTAGGAGCAGAAGCATTTAT+AGG | - | tig0037710:6335-6354 | Msa1456730:intron | 35.0% |
| TTATAGGTGAACTTTGCTAC+GGG | - | tig0037710:6351-6370 | Msa1456730:intron | 35.0% | |
| TTTGCTTATGGATGTCAACA+AGG | - | tig0037710:6379-6398 | Msa1456730:intron | 35.0% | |
| TTGCTTATGGATGTCAACAA+GGG | - | tig0037710:6380-6399 | Msa1456730:intron | 35.0% | |
| GAATTGTTTCATGCTTGGTA+TGG | - | tig0037710:6430-6449 | Msa1456730:intron | 35.0% | |
| ! | AGATGGTGCTTTAAATCCAA+TGG | - | tig0037710:6505-6524 | Msa1456730:intron | 35.0% |
| ATGAGAATGCAAAACTCCAT+TGG | + | tig0037710:6524-6543 | Msa1456730:intergenic | 35.0% | |
| ! | TAGGTTGAGTCCATGTTTAA+TGG | - | tig0037710:6547-6566 | Msa1456730:CDS | 35.0% |
| TTGAGTCCATGTTTAATGGA+TGG | - | tig0037710:6551-6570 | Msa1456730:CDS | 35.0% | |
| TTAGGTCCATCCATTAAACA+TGG | + | tig0037710:6560-6579 | Msa1456730:intergenic | 35.0% | |
| ! | TCAGCTACCATTTTCATCTT+AGG | + | tig0037710:5964-5983 | Msa1456730:intergenic | 35.0% |
| TGAAAATGGTAGCTGATTGT+AGG | - | tig0037710:5968-5987 | Msa1456730:CDS | 35.0% | |
| CTGATTGTAGGAGTAAATGA+AGG | - | tig0037710:5980-5999 | Msa1456730:CDS | 35.0% | |
| ATATTACCCTCAATTCGTCA+AGG | - | tig0037710:6093-6112 | Msa1456730:CDS | 35.0% | |
| TATTACCCTCAATTCGTCAA+GGG | - | tig0037710:6094-6113 | Msa1456730:CDS | 35.0% | |
| ATTATCCCTTGACGAATTGA+GGG | + | tig0037710:6102-6121 | Msa1456730:intergenic | 35.0% | |
| TTGCTAGGAACAATGTGAAA+GGG | + | tig0037710:6225-6244 | Msa1456730:intergenic | 35.0% | |
| AACTTCAAGTAGAAGTTGCT+AGG | + | tig0037710:6240-6259 | Msa1456730:intergenic | 35.0% | |
| TATCAAAATCCAACTCCATG+TGG | + | tig0037710:6277-6296 | Msa1456730:intergenic | 35.0% | |
| !! | CATGGAGTTGGATTTTGATA+TGG | - | tig0037710:6277-6296 | Msa1456730:intron | 35.0% |
| !! | TTAGGAGCAGAAGCATTTAT+AGG | - | tig0037710:6335-6354 | Msa1456730:intron | 35.0% |
| TTATAGGTGAACTTTGCTAC+GGG | - | tig0037710:6351-6370 | Msa1456730:intron | 35.0% | |
| TTTGCTTATGGATGTCAACA+AGG | - | tig0037710:6379-6398 | Msa1456730:intron | 35.0% | |
| TTGCTTATGGATGTCAACAA+GGG | - | tig0037710:6380-6399 | Msa1456730:intron | 35.0% | |
| GAATTGTTTCATGCTTGGTA+TGG | - | tig0037710:6430-6449 | Msa1456730:intron | 35.0% | |
| ! | AGATGGTGCTTTAAATCCAA+TGG | - | tig0037710:6505-6524 | Msa1456730:intron | 35.0% |
| ATGAGAATGCAAAACTCCAT+TGG | + | tig0037710:6524-6543 | Msa1456730:intergenic | 35.0% | |
| ! | TAGGTTGAGTCCATGTTTAA+TGG | - | tig0037710:6547-6566 | Msa1456730:CDS | 35.0% |
| TTGAGTCCATGTTTAATGGA+TGG | - | tig0037710:6551-6570 | Msa1456730:CDS | 35.0% | |
| TTAGGTCCATCCATTAAACA+TGG | + | tig0037710:6560-6579 | Msa1456730:intergenic | 35.0% | |
| CATTATCCCTTGACGAATTG+AGG | + | tig0037710:6103-6122 | Msa1456730:intergenic | 40.0% | |
| TGCTAGGAACAATGTGAAAG+GGG | + | tig0037710:6224-6243 | Msa1456730:intergenic | 40.0% | |
| GTTGCTAGGAACAATGTGAA+AGG | + | tig0037710:6226-6245 | Msa1456730:intergenic | 40.0% | |
| TTCACTCACAAGTTTCCACA+TGG | - | tig0037710:6259-6278 | Msa1456730:intron | 40.0% | |
| CTACGGGTTTCATTTGCTTA+TGG | - | tig0037710:6367-6386 | Msa1456730:intron | 40.0% | |
| TTGTTTCATGCTTGGTATGG+AGG | - | tig0037710:6433-6452 | Msa1456730:intron | 40.0% | |
| CATGCTAATGGAAGGTGATT+TGG | - | tig0037710:6478-6497 | Msa1456730:intron | 40.0% | |
| ! | CTAATGGAAGGTGATTTGGA+TGG | - | tig0037710:6482-6501 | Msa1456730:intron | 40.0% |
| CATTATCCCTTGACGAATTG+AGG | + | tig0037710:6103-6122 | Msa1456730:intergenic | 40.0% | |
| TGCTAGGAACAATGTGAAAG+GGG | + | tig0037710:6224-6243 | Msa1456730:intergenic | 40.0% | |
| GTTGCTAGGAACAATGTGAA+AGG | + | tig0037710:6226-6245 | Msa1456730:intergenic | 40.0% | |
| TTCACTCACAAGTTTCCACA+TGG | - | tig0037710:6259-6278 | Msa1456730:intron | 40.0% | |
| CTACGGGTTTCATTTGCTTA+TGG | - | tig0037710:6367-6386 | Msa1456730:intron | 40.0% | |
| TTGTTTCATGCTTGGTATGG+AGG | - | tig0037710:6433-6452 | Msa1456730:intron | 40.0% | |
| CATGCTAATGGAAGGTGATT+TGG | - | tig0037710:6478-6497 | Msa1456730:intron | 40.0% | |
| ! | CTAATGGAAGGTGATTTGGA+TGG | - | tig0037710:6482-6501 | Msa1456730:intron | 40.0% |
| CACAAGTTTCCACATGGAGT+TGG | - | tig0037710:6265-6284 | Msa1456730:intron | 45.0% | |
| TGAGGACTACTTTCCATCCA+TGG | - | tig0037710:6304-6323 | Msa1456730:intron | 45.0% | |
| TGAGCTCGTGTACATGCTAA+TGG | - | tig0037710:6466-6485 | Msa1456730:intron | 45.0% | |
| CTCGTGTACATGCTAATGGA+AGG | - | tig0037710:6470-6489 | Msa1456730:intron | 45.0% | |
| ! | GAAGGTGATTTGGATGGAGA+TGG | - | tig0037710:6488-6507 | Msa1456730:intron | 45.0% |
| CACAAGTTTCCACATGGAGT+TGG | - | tig0037710:6265-6284 | Msa1456730:intron | 45.0% | |
| TGAGGACTACTTTCCATCCA+TGG | - | tig0037710:6304-6323 | Msa1456730:intron | 45.0% | |
| TGAGCTCGTGTACATGCTAA+TGG | - | tig0037710:6466-6485 | Msa1456730:intron | 45.0% | |
| CTCGTGTACATGCTAATGGA+AGG | - | tig0037710:6470-6489 | Msa1456730:intron | 45.0% | |
| ! | GAAGGTGATTTGGATGGAGA+TGG | - | tig0037710:6488-6507 | Msa1456730:intron | 45.0% |
| CCTAAACTCGCAACCATGGA+TGG | + | tig0037710:6320-6339 | Msa1456730:intergenic | 50.0% | |
| CCATCCATGGTTGCGAGTTT+AGG | - | tig0037710:6317-6336 | Msa1456730:intron | 50.0% | |
| TGCTCCTAAACTCGCAACCA+TGG | + | tig0037710:6324-6343 | Msa1456730:intergenic | 50.0% | |
| TCATGCTTGGTATGGAGGTG+AGG | - | tig0037710:6438-6457 | Msa1456730:intron | 50.0% | |
| CATGCTTGGTATGGAGGTGA+GGG | - | tig0037710:6439-6458 | Msa1456730:intron | 50.0% | |
| CCTAAACTCGCAACCATGGA+TGG | + | tig0037710:6320-6339 | Msa1456730:intergenic | 50.0% | |
| CCATCCATGGTTGCGAGTTT+AGG | - | tig0037710:6317-6336 | Msa1456730:intron | 50.0% | |
| TGCTCCTAAACTCGCAACCA+TGG | + | tig0037710:6324-6343 | Msa1456730:intergenic | 50.0% | |
| TCATGCTTGGTATGGAGGTG+AGG | - | tig0037710:6438-6457 | Msa1456730:intron | 50.0% | |
| CATGCTTGGTATGGAGGTGA+GGG | - | tig0037710:6439-6458 | Msa1456730:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0037710 | gene | 5870 | 6622 | 5870 | ID=Msa1456730;Name=Msa1456730 |
| tig0037710 | mRNA | 5870 | 6622 | 5870 | ID=Msa1456730-mRNA-1;Parent=Msa1456730;Name=Msa1456730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.5|1|1|2|0|153 |
| tig0037710 | exon | 6542 | 6622 | 6542 | ID=Msa1456730-mRNA-1:exon:20864;Parent=Msa1456730-mRNA-1 |
| tig0037710 | exon | 5870 | 6250 | 5870 | ID=Msa1456730-mRNA-1:exon:20863;Parent=Msa1456730-mRNA-1 |
| tig0037710 | CDS | 6542 | 6622 | 6542 | ID=Msa1456730-mRNA-1:cds;Parent=Msa1456730-mRNA-1 |
| tig0037710 | CDS | 5870 | 6250 | 5870 | ID=Msa1456730-mRNA-1:cds;Parent=Msa1456730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
