AlfalfaGEDB | Msa0015710

M. sativa cultivar zhongmu-4 / Msa0015710

KEGG: -
GO: -
PFAM: PF04852.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015710	sp\|O82268\|LSH3_ARATH	73.684	190	40	1	5	194	6	185	4.53e-87	259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015710	A0A072VGF5	96.729	214	5	1	1	212	1	214	1.23e-148	421

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006980	Msa0015710	0.828397	9.196955e-55	-8.615850e-47
Msa0015710	Msa0016120	0.908514	1.573971e-81	-8.615850e-47
Msa0015710	Msa0055450	0.825324	4.988049e-54	-8.615850e-47
Msa0015710	Msa0109880	0.933874	9.630045e-96	-8.615850e-47
Msa0015710	Msa0124130	0.858793	6.452883e-63	-8.615850e-47
Msa0015710	Msa0149140	0.841809	3.792822e-58	-8.615850e-47
Msa0015710	Msa0156250	0.896176	4.739962e-76	-8.615850e-47
Msa0015710	Msa0185490	0.808261	3.378838e-50	-8.615850e-47
Msa0015710	Msa0212150	0.839858	1.232309e-57	-8.615850e-47
Msa0015710	Msa0239030	0.804119	2.516952e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015710	MtrunA17_Chr1g0167411	96.729	214	5	1	1	212	1	214	2.37e-152	421
Msa0015710	MtrunA17_Chr1g0187671	90.260	154	15	0	51	204	41	194	4.54e-90	263
Msa0015710	MtrunA17_Chr5g0431211	80.282	142	28	0	53	194	27	168	6.38e-88	258
Msa0015710	MtrunA17_Chr4g0051251	83.704	135	22	0	62	196	45	179	4.79e-87	256
Msa0015710	MtrunA17_Chr7g0261381	74.742	194	48	1	1	193	1	194	7.06e-86	253
Msa0015710	MtrunA17_Chr1g0183761	96.183	131	5	0	63	193	45	175	4.50e-84	248
Msa0015710	MtrunA17_Chr3g0105921	70.760	171	39	2	35	194	3	173	2.31e-76	229
Msa0015710	MtrunA17_Chr2g0325831	71.724	145	41	0	42	186	2	146	3.10e-75	224
Msa0015710	MtrunA17_Chr4g0041141	74.436	133	34	0	54	186	20	152	7.21e-75	223
Msa0015710	MtrunA17_Chr2g0315791	65.644	163	55	1	32	193	1	163	9.95e-74	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015710	AT2G31160.1	73.684	190	40	1	5	194	6	185	4.60e-88	259
Msa0015710	AT1G07090.1	77.551	147	28	1	49	195	22	163	1.00e-86	254
Msa0015710	AT3G23290.2	95.238	126	6	0	62	187	47	172	5.33e-82	243
Msa0015710	AT5G58500.1	80.741	135	25	1	61	194	17	151	8.27e-82	241
Msa0015710	AT5G28490.1	80.405	148	23	1	45	192	13	154	1.72e-75	226
Msa0015710	AT2G42610.1	77.344	128	29	0	59	186	21	148	9.29e-73	218
Msa0015710	AT2G42610.2	77.344	128	29	0	59	186	21	148	9.29e-73	218
Msa0015710	AT3G04510.1	65.169	178	45	1	15	192	2	162	4.34e-71	215
Msa0015710	AT1G78815.1	62.585	147	55	0	62	208	39	185	9.06e-67	204
Msa0015710	AT4G18610.1	64.138	145	51	1	43	186	17	161	5.03e-64	197

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Find 64 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCAGAAGCTAATCCTTT+TGG	0.361490	1_1:+25318268	Msa0015710:CDS
AAGTCTTGAGATCAGTACAT+GGG	0.676097	1_1:+25319497	Msa0015710:three_prime_UTR
ACTTTACCTTCGCGAAGTTA+GGG	0.398859	1_1:+25318306	Msa0015710:CDS
AGAAGAGATTGGAACACATT+TGG	0.367128	1_1:+25318007	Msa0015710:CDS
AGAATCAAAAGAGAAGAGAT+TGG	0.459394	1_1:+25317996	Msa0015710:CDS
AGAGGACAAGGACATGGTGC+AGG	0.565916	1_1:-25318175	None:intergenic
AGAGTGAAAGTGGTGGTCTA+TGG	0.493036	1_1:-25318045	None:intergenic
ATAAATTTGTGTGTACTTGA+AGG	0.495736	1_1:+25319678	Msa0015710:three_prime_UTR
ATGATGGGTTTGTTATCATA+GGG	0.482921	1_1:-25317862	None:intergenic
ATGGAAACTGCAGTGAAAGC+TGG	0.474521	1_1:+25319543	Msa0015710:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAGAATTCATTGTTACT+TGG	-	chr1_1:25317796-25317815	None:intergenic	30.0%
AGAATCAAAAGAGAAGAGAT+TGG	+	chr1_1:25317996-25318015	Msa0015710:CDS	30.0%
GTTGTAGTTGCATTATTTGA+TGG	-	chr1_1:25318409-25318428	None:intergenic	30.0%
TAAGAGATACTCGGAAAATT+TGG	-	chr1_1:25318813-25318832	None:intergenic	30.0%
TATTGAGATTTCCTACATTG+GGG	-	chr1_1:25319132-25319151	None:intergenic	30.0%
CATATTGAGATTTCCTACAT+TGG	-	chr1_1:25319134-25319153	None:intergenic	30.0%
TTTGTGTGACCAATTATTCA+CGG	+	chr1_1:25319644-25319663	Msa0015710:three_prime_UTR	30.0%
GAAGAGAATTCATTGTTACT+TGG	-	chr1_1:25317796-25317815	None:intergenic	30.0%
AGAATCAAAAGAGAAGAGAT+TGG	+	chr1_1:25317996-25318015	Msa0015710:CDS	30.0%
GTTGTAGTTGCATTATTTGA+TGG	-	chr1_1:25318409-25318428	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	25317635	25319773	25317635	ID=Msa0015710;Name=Msa0015710
chr1_1	mRNA	25317635	25319773	25317635	ID=Msa0015710-mRNA-1;Parent=Msa0015710;Name=Msa0015710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=168\|0\|0.5\|1\|0\|0.5\|2\|277\|212
chr1_1	exon	25317635	25318441	25317635	ID=Msa0015710-mRNA-1:exon:8780;Parent=Msa0015710-mRNA-1
chr1_1	exon	25319497	25319773	25319497	ID=Msa0015710-mRNA-1:exon:8781;Parent=Msa0015710-mRNA-1
chr1_1	five_prime_UTR	25317635	25317802	25317635	ID=Msa0015710-mRNA-1:five_prime_utr;Parent=Msa0015710-mRNA-1
chr1_1	CDS	25317803	25318441	25317803	ID=Msa0015710-mRNA-1:cds;Parent=Msa0015710-mRNA-1
chr1_1	three_prime_UTR	25319497	25319773	25319497	ID=Msa0015710-mRNA-1:three_prime_utr;Parent=Msa0015710-mRNA-1

Gene Sequence

>Msa0015710

ATGAATTCTCTTCAAGAATTTGAATCATCAACCAAGAACAAAGACATGATGAACACAAACCCTATGATAACAAACCCATCATCATCCATGACGATGACCATACCATCATCATCTACAACATCAGCATCATCCTCGTCCACAACAACAACATCACCTCCATCAACAACATCAACAACAACACCAAGTAGATACGAGAATCAAAAGAGAAGAGATTGGAACACATTTGGACAATACCTAAGAAACCATAGACCACCACTTTCACTCTCACGTTGTAGTGGAGCTCATGTCCTTGAATTCTTGCGTTACCTCGACCAATTTGGAAAAACAAAGGTTCACACTCAGATTTGTCCCTTTTATGGACATCCAAATCCACCTGCACCATGTCCTTGTCCTCTTCGCCAAGCGTGGGGTAGTCTTGATGCACTCATTGGGAGACTTAGAGCTGCTTTTGAAGAAAATGGTGGGAAGCCAGAAGCTAATCCTTTTGGTGCTCGTGCTGTTCGACTTTACCTTCGCGAAGTTAGGGATTCTCAAGCTAAAGCTAGAGGTATTAGCTATGAGAAAAAGAAGCGCAAGCGTCCGCCTCAGCCGCCACCACCACCACCATCAAATAATGCAACTACAACTGATCTTCACTAG

Protein sequence

>Msa0015710

MNSLQEFESSTKNKDMMNTNPMITNPSSSMTMTIPSSSTTSASSSSTTTTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQPPPPPPSNNATTTDLH*