Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465200 | XP_003625185.1 | 96.739 | 92 | 3 | 0 | 1 | 92 | 1 | 92 | 6.39e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465200 | sp|Q9FL54|DNAJ6_ARATH | 62.136 | 103 | 31 | 2 | 1 | 95 | 1 | 103 | 8.52e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465200 | A2Q3D3 | 96.739 | 92 | 3 | 0 | 1 | 92 | 1 | 92 | 3.05e-56 | 184 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012940 | Msa1465200 | 0.811185 | 7.945631e-51 | -8.615850e-47 |
| Msa0047640 | Msa1465200 | 0.816792 | 4.606255e-52 | -8.615850e-47 |
| Msa0093850 | Msa1465200 | 0.826900 | 2.105091e-54 | -8.615850e-47 |
| Msa0106320 | Msa1465200 | 0.802927 | 4.447004e-49 | -8.615850e-47 |
| Msa1356610 | Msa1465200 | 0.804862 | 1.761937e-49 | -8.615850e-47 |
| Msa1373820 | Msa1465200 | 0.814472 | 1.514005e-51 | -8.615850e-47 |
| Msa1393820 | Msa1465200 | 0.803643 | 3.160326e-49 | -8.615850e-47 |
| Msa0608270 | Msa1465200 | 0.800287 | 1.546908e-48 | -8.615850e-47 |
| Msa0648830 | Msa1465200 | 0.800304 | 1.534940e-48 | -8.615850e-47 |
| Msa0669180 | Msa1465200 | 0.807651 | 4.554569e-50 | -8.615850e-47 |
| Msa0797660 | Msa1465200 | 0.808944 | 2.414839e-50 | -8.615850e-47 |
| Msa1278740 | Msa1465200 | 0.800163 | 1.639285e-48 | -8.615850e-47 |
| Msa0995370 | Msa1465200 | 0.810220 | 1.284674e-50 | -8.615850e-47 |
| Msa1074900 | Msa1465200 | 0.858851 | 6.201730e-63 | -8.615850e-47 |
| Msa0241830 | Msa1465200 | 0.804214 | 2.404619e-49 | -8.615850e-47 |
| Msa0270210 | Msa1465200 | 0.802738 | 4.864402e-49 | -8.615850e-47 |
| Msa0301520 | Msa1465200 | 0.808809 | 2.581026e-50 | -8.615850e-47 |
| Msa0322900 | Msa1465200 | 0.818196 | 2.224089e-52 | -8.615850e-47 |
| Msa0341690 | Msa1465200 | 0.822151 | 2.761221e-53 | -8.615850e-47 |
| Msa1123350 | Msa1465200 | 0.805562 | 1.257371e-49 | -8.615850e-47 |
| Msa1127590 | Msa1465200 | 0.804580 | 2.017471e-49 | -8.615850e-47 |
| Msa1162230 | Msa1465200 | 0.826759 | 2.274371e-54 | -8.615850e-47 |
| Msa0544730 | Msa1465200 | 0.810008 | 1.426891e-50 | -8.615850e-47 |
| Msa0547990 | Msa1465200 | 0.804694 | 1.910435e-49 | -8.615850e-47 |
| Msa0593700 | Msa1465200 | 0.800701 | 1.273627e-48 | -8.615850e-47 |
| Msa0597770 | Msa1465200 | 0.800690 | 1.280413e-48 | -8.615850e-47 |
| Msa0959520 | Msa1465200 | 0.809041 | 2.302238e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465200 | MtrunA17_Chr7g0258061 | 96.739 | 92 | 3 | 0 | 1 | 92 | 1 | 92 | 5.87e-60 | 184 |
| Msa1465200 | MtrunA17_Chr1g0173931 | 74.157 | 89 | 22 | 1 | 10 | 97 | 26 | 114 | 2.71e-40 | 134 |
| Msa1465200 | MtrunA17_Chr3g0087741 | 56.716 | 67 | 29 | 0 | 21 | 87 | 88 | 154 | 3.42e-18 | 77.8 |
| Msa1465200 | MtrunA17_Chr7g0269841 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 1.36e-17 | 75.9 |
| Msa1465200 | MtrunA17_Chr4g0010781 | 53.731 | 67 | 31 | 0 | 21 | 87 | 85 | 151 | 4.66e-17 | 74.7 |
| Msa1465200 | MtrunA17_Chr7g0271891 | 52.308 | 65 | 27 | 2 | 24 | 84 | 18 | 82 | 2.76e-16 | 69.7 |
| Msa1465200 | MtrunA17_Chr1g0209551 | 53.125 | 64 | 30 | 0 | 24 | 87 | 18 | 81 | 4.43e-15 | 68.9 |
| Msa1465200 | MtrunA17_Chr8g0344721 | 43.373 | 83 | 40 | 2 | 16 | 92 | 4 | 85 | 4.85e-15 | 67.8 |
| Msa1465200 | MtrunA17_Chr2g0295821 | 48.649 | 74 | 33 | 2 | 24 | 95 | 106 | 176 | 6.41e-15 | 68.6 |
| Msa1465200 | MtrunA17_Chr4g0040501 | 47.692 | 65 | 33 | 1 | 24 | 87 | 6 | 70 | 9.52e-15 | 67.8 |
| Msa1465200 | MtrunA17_Chr7g0242951 | 53.125 | 64 | 29 | 1 | 24 | 87 | 29 | 91 | 9.81e-15 | 68.2 |
| Msa1465200 | MtrunA17_Chr2g0282741 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.03e-14 | 67.8 |
| Msa1465200 | MtrunA17_Chr3g0138471 | 43.077 | 65 | 36 | 1 | 24 | 87 | 6 | 70 | 1.99e-14 | 67.0 |
| Msa1465200 | MtrunA17_Chr5g0426951 | 45.455 | 66 | 36 | 0 | 20 | 85 | 81 | 146 | 3.87e-14 | 66.2 |
| Msa1465200 | MtrunA17_Chr2g0324921 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 4.28e-14 | 65.9 |
| Msa1465200 | MtrunA17_Chr2g0282761 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 6.11e-14 | 65.5 |
| Msa1465200 | MtrunA17_Chr8g0352451 | 51.562 | 64 | 31 | 0 | 24 | 87 | 74 | 137 | 6.94e-14 | 65.5 |
| Msa1465200 | MtrunA17_Chr5g0414471 | 42.105 | 76 | 44 | 0 | 12 | 87 | 15 | 90 | 8.68e-14 | 65.5 |
| Msa1465200 | MtrunA17_Chr6g0478651 | 49.275 | 69 | 30 | 2 | 21 | 87 | 67 | 132 | 1.01e-13 | 65.1 |
| Msa1465200 | MtrunA17_Chr1g0159491 | 40.541 | 74 | 42 | 1 | 24 | 97 | 8 | 79 | 1.18e-13 | 60.5 |
| Msa1465200 | MtrunA17_Chr5g0393371 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 1.62e-13 | 64.7 |
| Msa1465200 | MtrunA17_Chr4g0006391 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.89e-13 | 64.3 |
| Msa1465200 | MtrunA17_Chr8g0334811 | 44.828 | 87 | 36 | 3 | 1 | 87 | 1 | 75 | 7.27e-13 | 62.8 |
| Msa1465200 | MtrunA17_Chr2g0295831 | 43.662 | 71 | 35 | 2 | 24 | 92 | 112 | 179 | 1.18e-12 | 61.2 |
| Msa1465200 | MtrunA17_Chr7g0263971 | 49.254 | 67 | 33 | 1 | 20 | 85 | 367 | 433 | 1.99e-12 | 61.6 |
| Msa1465200 | MtrunA17_Chr3g0123861 | 46.875 | 64 | 33 | 1 | 24 | 87 | 84 | 146 | 2.10e-12 | 61.2 |
| Msa1465200 | MtrunA17_Chr2g0333221 | 46.970 | 66 | 30 | 2 | 24 | 87 | 72 | 134 | 3.37e-12 | 60.8 |
| Msa1465200 | MtrunA17_Chr1g0206121 | 49.180 | 61 | 30 | 1 | 24 | 84 | 37 | 96 | 4.26e-12 | 60.1 |
| Msa1465200 | MtrunA17_Chr6g0460461 | 46.970 | 66 | 30 | 1 | 24 | 84 | 4 | 69 | 4.64e-12 | 59.3 |
| Msa1465200 | MtrunA17_Chr6g0460411 | 46.970 | 66 | 30 | 1 | 24 | 84 | 4 | 69 | 4.94e-12 | 59.3 |
| Msa1465200 | MtrunA17_Chr4g0021141 | 34.884 | 86 | 55 | 1 | 2 | 87 | 3 | 87 | 1.45e-11 | 56.6 |
| Msa1465200 | MtrunA17_Chr2g0307061 | 41.429 | 70 | 36 | 2 | 20 | 87 | 108 | 174 | 1.56e-11 | 58.9 |
| Msa1465200 | MtrunA17_Chr1g0159511 | 43.750 | 64 | 36 | 0 | 24 | 87 | 8 | 71 | 2.95e-11 | 58.2 |
| Msa1465200 | MtrunA17_Chr6g0460381 | 43.939 | 66 | 32 | 1 | 24 | 84 | 5 | 70 | 3.39e-11 | 57.0 |
| Msa1465200 | MtrunA17_Chr2g0328581 | 49.180 | 61 | 30 | 1 | 24 | 84 | 77 | 136 | 9.92e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465200 | AT3G12170.1 | 78.481 | 79 | 16 | 1 | 20 | 97 | 9 | 87 | 8.03e-37 | 125 |
| Msa1465200 | AT3G12170.2 | 78.481 | 79 | 16 | 1 | 20 | 97 | 45 | 123 | 1.93e-36 | 125 |
| Msa1465200 | AT5G06910.1 | 62.136 | 103 | 31 | 2 | 1 | 95 | 1 | 103 | 8.66e-35 | 120 |
| Msa1465200 | AT5G48030.1 | 58.209 | 67 | 28 | 0 | 21 | 87 | 93 | 159 | 1.01e-17 | 77.0 |
| Msa1465200 | AT1G56300.1 | 47.826 | 69 | 32 | 2 | 20 | 84 | 11 | 79 | 1.21e-16 | 70.5 |
| Msa1465200 | AT1G56300.2 | 47.826 | 69 | 32 | 2 | 20 | 84 | 11 | 79 | 1.22e-16 | 69.7 |
| Msa1465200 | AT5G03160.1 | 50.685 | 73 | 35 | 1 | 20 | 91 | 368 | 440 | 1.27e-16 | 73.9 |
| Msa1465200 | AT3G62600.1 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 2.58e-16 | 72.4 |
| Msa1465200 | AT3G14200.1 | 45.745 | 94 | 39 | 4 | 10 | 96 | 4 | 92 | 1.07e-15 | 69.7 |
| Msa1465200 | AT1G59980.1 | 49.231 | 65 | 33 | 0 | 24 | 88 | 25 | 89 | 1.47e-15 | 70.9 |
| Msa1465200 | AT5G01390.3 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 1.67e-15 | 69.3 |
| Msa1465200 | AT4G39150.3 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 2.04e-15 | 70.1 |
| Msa1465200 | AT4G39150.1 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 2.04e-15 | 70.1 |
| Msa1465200 | AT4G39150.2 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 2.04e-15 | 70.1 |
| Msa1465200 | AT5G01390.2 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 2.49e-15 | 69.3 |
| Msa1465200 | AT5G01390.4 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 2.64e-15 | 68.6 |
| Msa1465200 | AT1G59980.2 | 41.463 | 82 | 48 | 0 | 6 | 87 | 7 | 88 | 3.54e-15 | 69.3 |
| Msa1465200 | AT5G01390.1 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 4.05e-15 | 69.3 |
| Msa1465200 | AT2G21510.3 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 6.02e-15 | 68.9 |
| Msa1465200 | AT2G21510.1 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 6.02e-15 | 68.9 |
| Msa1465200 | AT2G21510.2 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 6.18e-15 | 68.9 |
| Msa1465200 | AT2G21510.4 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 6.18e-15 | 68.9 |
| Msa1465200 | AT2G21510.5 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 6.76e-15 | 68.6 |
| Msa1465200 | AT5G49060.2 | 48.571 | 70 | 31 | 2 | 24 | 91 | 101 | 167 | 9.14e-15 | 68.2 |
| Msa1465200 | AT5G49060.1 | 48.571 | 70 | 31 | 2 | 24 | 91 | 101 | 167 | 9.14e-15 | 68.2 |
| Msa1465200 | AT4G28480.2 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 1.94e-14 | 67.0 |
| Msa1465200 | AT4G28480.1 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 2.72e-14 | 67.0 |
| Msa1465200 | AT3G08910.1 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 3.26e-14 | 66.6 |
| Msa1465200 | AT1G68370.1 | 47.945 | 73 | 38 | 0 | 24 | 96 | 19 | 91 | 5.51e-14 | 66.2 |
| Msa1465200 | AT1G21080.3 | 47.692 | 65 | 34 | 0 | 23 | 87 | 7 | 71 | 6.57e-14 | 65.9 |
| Msa1465200 | AT1G21080.1 | 47.692 | 65 | 34 | 0 | 23 | 87 | 7 | 71 | 7.09e-14 | 65.9 |
| Msa1465200 | AT5G25530.2 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 7.73e-14 | 65.5 |
| Msa1465200 | AT1G77020.1 | 51.562 | 64 | 31 | 0 | 24 | 87 | 8 | 71 | 8.14e-14 | 65.9 |
| Msa1465200 | AT5G16650.1 | 41.333 | 75 | 44 | 0 | 13 | 87 | 2 | 76 | 1.18e-13 | 62.4 |
| Msa1465200 | AT1G71000.2 | 41.892 | 74 | 39 | 1 | 15 | 84 | 1 | 74 | 1.68e-13 | 62.8 |
| Msa1465200 | AT1G76700.1 | 48.438 | 64 | 33 | 0 | 24 | 87 | 8 | 71 | 1.75e-13 | 64.7 |
| Msa1465200 | AT2G20560.1 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.82e-13 | 64.7 |
| Msa1465200 | AT4G39960.1 | 49.231 | 65 | 32 | 1 | 23 | 87 | 86 | 149 | 1.93e-13 | 64.7 |
| Msa1465200 | AT4G39960.2 | 49.231 | 65 | 32 | 1 | 23 | 87 | 86 | 149 | 1.93e-13 | 64.7 |
| Msa1465200 | AT3G08970.1 | 51.562 | 64 | 30 | 1 | 24 | 87 | 29 | 91 | 2.75e-13 | 64.3 |
| Msa1465200 | AT3G08970.2 | 51.562 | 64 | 30 | 1 | 24 | 87 | 29 | 91 | 2.75e-13 | 64.3 |
| Msa1465200 | AT5G16650.2 | 41.333 | 75 | 44 | 0 | 13 | 87 | 2 | 76 | 3.39e-13 | 62.0 |
| Msa1465200 | AT1G71000.1 | 42.667 | 75 | 38 | 2 | 20 | 90 | 6 | 79 | 3.53e-13 | 62.0 |
| Msa1465200 | AT1G80030.2 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 5.16e-13 | 63.5 |
| Msa1465200 | AT1G80030.3 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 5.16e-13 | 63.5 |
| Msa1465200 | AT1G80030.1 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 5.16e-13 | 63.5 |
| Msa1465200 | AT1G59725.1 | 42.424 | 66 | 36 | 1 | 24 | 87 | 6 | 71 | 5.77e-13 | 63.2 |
| Msa1465200 | AT1G28210.2 | 38.028 | 71 | 44 | 0 | 15 | 85 | 41 | 111 | 6.81e-13 | 63.2 |
| Msa1465200 | AT1G80030.4 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 6.95e-13 | 63.2 |
| Msa1465200 | AT1G28210.3 | 38.028 | 71 | 44 | 0 | 15 | 85 | 41 | 111 | 9.14e-13 | 62.8 |
| Msa1465200 | AT1G28210.1 | 38.028 | 71 | 44 | 0 | 15 | 85 | 41 | 111 | 9.56e-13 | 62.8 |
| Msa1465200 | AT2G22360.1 | 48.438 | 64 | 32 | 1 | 24 | 87 | 88 | 150 | 1.30e-12 | 62.4 |
| Msa1465200 | AT1G10350.1 | 40.000 | 65 | 38 | 1 | 24 | 87 | 6 | 70 | 1.53e-12 | 62.0 |
| Msa1465200 | AT3G57340.1 | 44.286 | 70 | 34 | 2 | 20 | 87 | 111 | 177 | 1.91e-12 | 62.0 |
| Msa1465200 | AT3G57340.2 | 44.286 | 70 | 34 | 2 | 20 | 87 | 111 | 177 | 1.91e-12 | 62.0 |
| Msa1465200 | AT1G24120.1 | 39.744 | 78 | 47 | 0 | 10 | 87 | 8 | 85 | 3.88e-12 | 60.8 |
| Msa1465200 | AT5G05750.1 | 41.429 | 70 | 36 | 2 | 20 | 87 | 112 | 178 | 8.09e-12 | 59.7 |
| Msa1465200 | AT5G25530.1 | 39.726 | 73 | 35 | 2 | 24 | 87 | 6 | 78 | 1.23e-11 | 59.7 |
| Msa1465200 | AT3G17830.1 | 46.970 | 66 | 30 | 2 | 24 | 87 | 65 | 127 | 2.22e-11 | 58.9 |
| Msa1465200 | AT4G13830.1 | 33.333 | 84 | 54 | 1 | 4 | 85 | 48 | 131 | 2.79e-11 | 56.6 |
| Msa1465200 | AT4G13830.3 | 33.333 | 84 | 54 | 1 | 4 | 85 | 48 | 131 | 3.57e-11 | 57.0 |
Find 24 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGCTATAATTTACGATTC+AGG | 0.236137 | tig0045028:-4450 | Msa1465200:intergenic |
| AAAGAAGGCTTATTACAAAT+TGG | 0.280754 | tig0045028:+5403 | Msa1465200:CDS |
| ACACAGAGAGATTTGTTTGA+TGG | 0.322319 | tig0045028:-4571 | None:intergenic |
| TCATCACCAGGATTCTTATC+TGG | 0.362396 | tig0045028:-5440 | None:intergenic |
| TTTCTCTTCGTCTCCAAGAA+TGG | 0.400542 | tig0045028:-5609 | None:intergenic |
| TAACGGCGGGAAAAGAATAA+AGG | 0.432023 | tig0045028:+4421 | None:intergenic |
| ATCTTCAATTTCTTCATCAT+CGG | 0.442588 | tig0045028:-4627 | Msa1465200:intergenic |
| GATGATGTGAGTGGTGTTGT+TGG | 0.451988 | tig0045028:+5665 | Msa1465200:CDS |
| TTCTTGGAGACGAAGAGAAA+CGG | 0.455460 | tig0045028:+5612 | Msa1465200:CDS |
| GGTTCTTGGGTTGGAGAAAA+CGG | 0.460667 | tig0045028:+5364 | Msa1465200:intron |
| TCTTGGAGACGAAGAGAAAC+GGG | 0.461614 | tig0045028:+5613 | Msa1465200:CDS |
| TGGCGCCGAGGAAGAAAACT+AGG | 0.485201 | tig0045028:+4600 | Msa1465200:CDS |
| CTTCTTTATTTCTTGTTGAG+AGG | 0.513111 | tig0045028:-5387 | Msa1465200:intergenic |
| CTCCATCCAGATAAGAATCC+TGG | 0.528887 | tig0045028:+5434 | Msa1465200:CDS |
| CACCAGGATTCTTATCTGGA+TGG | 0.539771 | tig0045028:-5436 | Msa1465200:intergenic |
| CCTGAATCGTAAATTATAGC+GGG | 0.543962 | tig0045028:+4450 | Msa1465200:five_prime_UTR |
| ACCTCAAAAGACTCTCTACC+AGG | 0.549839 | tig0045028:+4652 | Msa1465200:CDS |
| CTTATTACAAATTGGCATTG+CGG | 0.571383 | tig0045028:+5411 | Msa1465200:CDS |
| CTCTCAACAAGAAATAAAGA+AGG | 0.577556 | tig0045028:+5388 | Msa1465200:CDS |
| CGGGCTCTCTATGATCAGAC+TGG | 0.592329 | tig0045028:+5632 | Msa1465200:CDS |
| ACCTGAATCGTAAATTATAG+CGG | 0.612965 | tig0045028:+4449 | Msa1465200:five_prime_UTR |
| AGATAAGAATCCTGGTGATG+AGG | 0.625604 | tig0045028:+5442 | Msa1465200:CDS |
| TGCATTGATGATGATGTGAG+TGG | 0.663032 | tig0045028:+5656 | Msa1465200:CDS |
| GGCGCCGAGGAAGAAAACTA+GGG | 0.675011 | tig0045028:+4601 | Msa1465200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAACAAAGAAAAAAA+AGG | - | tig0045028:4830-4849 | Msa1465200:intergenic | 10.0% |
| !!! | ATATTTTATTATTTGTTTGT+TGG | + | tig0045028:5505-5524 | Msa1465200:intron | 10.0% |
| !! | TATATAAACAAAGAAAAAAA+AGG | - | tig0045028:4830-4849 | Msa1465200:intergenic | 10.0% |
| !!! | ATATTTTATTATTTGTTTGT+TGG | + | tig0045028:5505-5524 | Msa1465200:intron | 10.0% |
| !!! | ATTTTTAAACAAAAAGTTTG+TGG | - | tig0045028:4481-4500 | Msa1465200:intergenic | 15.0% |
| !!! | TGCTTAAATTTATTATTTTG+CGG | + | tig0045028:5069-5088 | Msa1465200:intron | 15.0% |
| !!! | ATTTTTAAACAAAAAGTTTG+TGG | - | tig0045028:4481-4500 | Msa1465200:intergenic | 15.0% |
| !!! | TGCTTAAATTTATTATTTTG+CGG | + | tig0045028:5069-5088 | Msa1465200:intron | 15.0% |
| ! | ATCTTCAATTTCTTCATCAT+CGG | - | tig0045028:4630-4649 | Msa1465200:intergenic | 25.0% |
| ! | AATACAAACTTTGTTCAACA+TGG | - | tig0045028:4856-4875 | Msa1465200:intergenic | 25.0% |
| !!! | TTGTATTTTTGTGTGTGTTA+AGG | + | tig0045028:4869-4888 | Msa1465200:intron | 25.0% |
| !! | TTGATCTGTGAAATTTTCAA+TGG | + | tig0045028:4977-4996 | Msa1465200:intron | 25.0% |
| !! | TTGGATCTTTTGTAATATCT+TGG | + | tig0045028:5100-5119 | Msa1465200:intron | 25.0% |
| !!! | TGGTTAAACCTTTTTTTCAA+TGG | + | tig0045028:5220-5239 | Msa1465200:intron | 25.0% |
| ! | CAAATGATCCATTGAAAAAA+AGG | - | tig0045028:5231-5250 | Msa1465200:intergenic | 25.0% |
| !!! | CTTTTTTTCAATGGATCATT+TGG | + | tig0045028:5229-5248 | Msa1465200:intron | 25.0% |
| !!! | GTCAAGAATTATTTTTGTTG+AGG | - | tig0045028:5291-5310 | Msa1465200:intergenic | 25.0% |
| ! | AAAGAAGGCTTATTACAAAT+TGG | + | tig0045028:5403-5422 | Msa1465200:CDS | 25.0% |
| !!! | TATTTGTTTGTTGGCTTTTT+TGG | + | tig0045028:5514-5533 | Msa1465200:intron | 25.0% |
| !!! | ATTTGTTTGTTGGCTTTTTT+GGG | + | tig0045028:5515-5534 | Msa1465200:intron | 25.0% |
| !! | AAATAACTTTTTGCAATTGC+TGG | - | tig0045028:5589-5608 | Msa1465200:intergenic | 25.0% |
| !! | CAAAAAGTTATTTCCATTCT+TGG | + | tig0045028:5596-5615 | Msa1465200:CDS | 25.0% |
| ! | ATCTTCAATTTCTTCATCAT+CGG | - | tig0045028:4630-4649 | Msa1465200:intergenic | 25.0% |
| ! | AATACAAACTTTGTTCAACA+TGG | - | tig0045028:4856-4875 | Msa1465200:intergenic | 25.0% |
| !!! | TTGTATTTTTGTGTGTGTTA+AGG | + | tig0045028:4869-4888 | Msa1465200:intron | 25.0% |
| !! | TTGATCTGTGAAATTTTCAA+TGG | + | tig0045028:4977-4996 | Msa1465200:intron | 25.0% |
| !! | TTGGATCTTTTGTAATATCT+TGG | + | tig0045028:5100-5119 | Msa1465200:intron | 25.0% |
| !!! | TGGTTAAACCTTTTTTTCAA+TGG | + | tig0045028:5220-5239 | Msa1465200:intron | 25.0% |
| ! | CAAATGATCCATTGAAAAAA+AGG | - | tig0045028:5231-5250 | Msa1465200:intergenic | 25.0% |
| !!! | CTTTTTTTCAATGGATCATT+TGG | + | tig0045028:5229-5248 | Msa1465200:intron | 25.0% |
| !!! | GTCAAGAATTATTTTTGTTG+AGG | - | tig0045028:5291-5310 | Msa1465200:intergenic | 25.0% |
| ! | AAAGAAGGCTTATTACAAAT+TGG | + | tig0045028:5403-5422 | Msa1465200:CDS | 25.0% |
| !!! | TATTTGTTTGTTGGCTTTTT+TGG | + | tig0045028:5514-5533 | Msa1465200:intron | 25.0% |
| !!! | ATTTGTTTGTTGGCTTTTTT+GGG | + | tig0045028:5515-5534 | Msa1465200:intron | 25.0% |
| !! | AAATAACTTTTTGCAATTGC+TGG | - | tig0045028:5589-5608 | Msa1465200:intergenic | 25.0% |
| !! | CAAAAAGTTATTTCCATTCT+TGG | + | tig0045028:5596-5615 | Msa1465200:CDS | 25.0% |
| ACCTGAATCGTAAATTATAG+CGG | + | tig0045028:4449-4468 | Msa1465200:five_prime_UTR | 30.0% | |
| AAATCTCTCTGTGTGAAAAA+TGG | + | tig0045028:4580-4599 | Msa1465200:exon | 30.0% | |
| ! | TCTGTGAAATTTTCAATGGA+AGG | + | tig0045028:4981-5000 | Msa1465200:intron | 30.0% |
| !! | TTATTTTGCGGCTAATTTCT+TGG | + | tig0045028:5081-5100 | Msa1465200:intron | 30.0% |
| ! | CTTTTGTAATATCTTGGTCT+TGG | + | tig0045028:5106-5125 | Msa1465200:intron | 30.0% |
| ! | AACCAGAGAACAAAGATTTT+TGG | - | tig0045028:5155-5174 | Msa1465200:intergenic | 30.0% |
| !! | ATAGGTTCTAGATTTGTTCT+TGG | + | tig0045028:5200-5219 | Msa1465200:intron | 30.0% |
| ACAAGTGGAACAAATAACAA+TGG | - | tig0045028:5263-5282 | Msa1465200:intergenic | 30.0% | |
| ACCTAAAATGAAGTCAACAA+CGG | - | tig0045028:5347-5366 | Msa1465200:intergenic | 30.0% | |
| !!! | TTGACTTCATTTTAGGTTCT+TGG | + | tig0045028:5350-5369 | Msa1465200:intron | 30.0% |
| !!! | TGACTTCATTTTAGGTTCTT+GGG | + | tig0045028:5351-5370 | Msa1465200:intron | 30.0% |
| ! | CTTCTTTATTTCTTGTTGAG+AGG | - | tig0045028:5390-5409 | Msa1465200:intergenic | 30.0% |
| CTCTCAACAAGAAATAAAGA+AGG | + | tig0045028:5388-5407 | Msa1465200:CDS | 30.0% | |
| CTTATTACAAATTGGCATTG+CGG | + | tig0045028:5411-5430 | Msa1465200:CDS | 30.0% | |
| GTAATTACTTGTGTTCATAC+AGG | + | tig0045028:5547-5566 | Msa1465200:intron | 30.0% | |
| ACCTGAATCGTAAATTATAG+CGG | + | tig0045028:4449-4468 | Msa1465200:five_prime_UTR | 30.0% | |
| AAATCTCTCTGTGTGAAAAA+TGG | + | tig0045028:4580-4599 | Msa1465200:exon | 30.0% | |
| ! | TCTGTGAAATTTTCAATGGA+AGG | + | tig0045028:4981-5000 | Msa1465200:intron | 30.0% |
| !! | TTATTTTGCGGCTAATTTCT+TGG | + | tig0045028:5081-5100 | Msa1465200:intron | 30.0% |
| ! | CTTTTGTAATATCTTGGTCT+TGG | + | tig0045028:5106-5125 | Msa1465200:intron | 30.0% |
| ! | AACCAGAGAACAAAGATTTT+TGG | - | tig0045028:5155-5174 | Msa1465200:intergenic | 30.0% |
| !! | ATAGGTTCTAGATTTGTTCT+TGG | + | tig0045028:5200-5219 | Msa1465200:intron | 30.0% |
| ACAAGTGGAACAAATAACAA+TGG | - | tig0045028:5263-5282 | Msa1465200:intergenic | 30.0% | |
| ACCTAAAATGAAGTCAACAA+CGG | - | tig0045028:5347-5366 | Msa1465200:intergenic | 30.0% | |
| !!! | TTGACTTCATTTTAGGTTCT+TGG | + | tig0045028:5350-5369 | Msa1465200:intron | 30.0% |
| !!! | TGACTTCATTTTAGGTTCTT+GGG | + | tig0045028:5351-5370 | Msa1465200:intron | 30.0% |
| ! | CTTCTTTATTTCTTGTTGAG+AGG | - | tig0045028:5390-5409 | Msa1465200:intergenic | 30.0% |
| CTCTCAACAAGAAATAAAGA+AGG | + | tig0045028:5388-5407 | Msa1465200:CDS | 30.0% | |
| CTTATTACAAATTGGCATTG+CGG | + | tig0045028:5411-5430 | Msa1465200:CDS | 30.0% | |
| GTAATTACTTGTGTTCATAC+AGG | + | tig0045028:5547-5566 | Msa1465200:intron | 30.0% | |
| CCTGAATCGTAAATTATAGC+GGG | + | tig0045028:4450-4469 | Msa1465200:five_prime_UTR | 35.0% | |
| ! | ACACAGAGAGATTTGTTTGA+TGG | - | tig0045028:4574-4593 | Msa1465200:intergenic | 35.0% |
| AGCGAAATGAAAATTTGCAG+AGG | - | tig0045028:4706-4725 | Msa1465200:intergenic | 35.0% | |
| !!! | TCTTGGTCTTGGATCTTTTT+TGG | + | tig0045028:5117-5136 | Msa1465200:intron | 35.0% |
| !!! | CTTGGTCTTGGATCTTTTTT+GGG | + | tig0045028:5118-5137 | Msa1465200:intron | 35.0% |
| !! | AAAGATTTTTGGACGCAGTT+TGG | - | tig0045028:5144-5163 | Msa1465200:intergenic | 35.0% |
| GTCCAAAAATCTTTGTTCTC+TGG | + | tig0045028:5150-5169 | Msa1465200:intron | 35.0% | |
| ! | TGTTCTCTGGTTTGATTGTT+TGG | + | tig0045028:5163-5182 | Msa1465200:intron | 35.0% |
| TTAGCATGTGTTTAGATGCA+CGG | - | tig0045028:5322-5341 | Msa1465200:intergenic | 35.0% | |
| !!! | TCCGTTGTTGACTTCATTTT+AGG | + | tig0045028:5343-5362 | Msa1465200:intron | 35.0% |
| !!! | TTCATTTTAGGTTCTTGGGT+TGG | + | tig0045028:5355-5374 | Msa1465200:intron | 35.0% |
| TAAAAAATCACCTCATCACC+AGG | - | tig0045028:5455-5474 | Msa1465200:intergenic | 35.0% | |
| !!! | GGTGATGAGGTGATTTTTTA+AGG | + | tig0045028:5455-5474 | Msa1465200:intron | 35.0% |
| ATTACTTGTGTTCATACAGG+AGG | + | tig0045028:5550-5569 | Msa1465200:intron | 35.0% | |
| CCTGAATCGTAAATTATAGC+GGG | + | tig0045028:4450-4469 | Msa1465200:five_prime_UTR | 35.0% | |
| ! | ACACAGAGAGATTTGTTTGA+TGG | - | tig0045028:4574-4593 | Msa1465200:intergenic | 35.0% |
| AGCGAAATGAAAATTTGCAG+AGG | - | tig0045028:4706-4725 | Msa1465200:intergenic | 35.0% | |
| !!! | TCTTGGTCTTGGATCTTTTT+TGG | + | tig0045028:5117-5136 | Msa1465200:intron | 35.0% |
| !!! | CTTGGTCTTGGATCTTTTTT+GGG | + | tig0045028:5118-5137 | Msa1465200:intron | 35.0% |
| !! | AAAGATTTTTGGACGCAGTT+TGG | - | tig0045028:5144-5163 | Msa1465200:intergenic | 35.0% |
| GTCCAAAAATCTTTGTTCTC+TGG | + | tig0045028:5150-5169 | Msa1465200:intron | 35.0% | |
| ! | TGTTCTCTGGTTTGATTGTT+TGG | + | tig0045028:5163-5182 | Msa1465200:intron | 35.0% |
| TTAGCATGTGTTTAGATGCA+CGG | - | tig0045028:5322-5341 | Msa1465200:intergenic | 35.0% | |
| !!! | TCCGTTGTTGACTTCATTTT+AGG | + | tig0045028:5343-5362 | Msa1465200:intron | 35.0% |
| !!! | TTCATTTTAGGTTCTTGGGT+TGG | + | tig0045028:5355-5374 | Msa1465200:intron | 35.0% |
| TAAAAAATCACCTCATCACC+AGG | - | tig0045028:5455-5474 | Msa1465200:intergenic | 35.0% | |
| !!! | GGTGATGAGGTGATTTTTTA+AGG | + | tig0045028:5455-5474 | Msa1465200:intron | 35.0% |
| ATTACTTGTGTTCATACAGG+AGG | + | tig0045028:5550-5569 | Msa1465200:intron | 35.0% | |
| CCCGCTATAATTTACGATTC+AGG | - | tig0045028:4453-4472 | Msa1465200:intergenic | 40.0% | |
| !! | GAAACCCTAGTTTTCTTCCT+CGG | - | tig0045028:4608-4627 | Msa1465200:intergenic | 40.0% |
| TCAATGGAAGGCTAGAGTAT+TGG | + | tig0045028:4993-5012 | Msa1465200:intron | 40.0% | |
| ! | CAATGGAAGGCTAGAGTATT+GGG | + | tig0045028:4994-5013 | Msa1465200:intron | 40.0% |
| TTGGAATTGCACTTGCACAT+AGG | + | tig0045028:5182-5201 | Msa1465200:intron | 40.0% | |
| TTTGTTGAGGAGTCAACAAG+TGG | - | tig0045028:5278-5297 | Msa1465200:intergenic | 40.0% | |
| TCATCACCAGGATTCTTATC+TGG | - | tig0045028:5443-5462 | Msa1465200:intergenic | 40.0% | |
| ! | AGATAAGAATCCTGGTGATG+AGG | + | tig0045028:5442-5461 | Msa1465200:CDS | 40.0% |
| !!! | GTTTGTTGGCTTTTTTGGGT+TGG | + | tig0045028:5519-5538 | Msa1465200:intron | 40.0% |
| TTTCTCTTCGTCTCCAAGAA+TGG | - | tig0045028:5612-5631 | Msa1465200:intergenic | 40.0% | |
| TTCTTGGAGACGAAGAGAAA+CGG | + | tig0045028:5612-5631 | Msa1465200:CDS | 40.0% | |
| !! | TGCATTGATGATGATGTGAG+TGG | + | tig0045028:5656-5675 | Msa1465200:CDS | 40.0% |
| CCCGCTATAATTTACGATTC+AGG | - | tig0045028:4453-4472 | Msa1465200:intergenic | 40.0% | |
| !! | GAAACCCTAGTTTTCTTCCT+CGG | - | tig0045028:4608-4627 | Msa1465200:intergenic | 40.0% |
| TCAATGGAAGGCTAGAGTAT+TGG | + | tig0045028:4993-5012 | Msa1465200:intron | 40.0% | |
| ! | CAATGGAAGGCTAGAGTATT+GGG | + | tig0045028:4994-5013 | Msa1465200:intron | 40.0% |
| TTGGAATTGCACTTGCACAT+AGG | + | tig0045028:5182-5201 | Msa1465200:intron | 40.0% | |
| TTTGTTGAGGAGTCAACAAG+TGG | - | tig0045028:5278-5297 | Msa1465200:intergenic | 40.0% | |
| TCATCACCAGGATTCTTATC+TGG | - | tig0045028:5443-5462 | Msa1465200:intergenic | 40.0% | |
| ! | AGATAAGAATCCTGGTGATG+AGG | + | tig0045028:5442-5461 | Msa1465200:CDS | 40.0% |
| !!! | GTTTGTTGGCTTTTTTGGGT+TGG | + | tig0045028:5519-5538 | Msa1465200:intron | 40.0% |
| TTTCTCTTCGTCTCCAAGAA+TGG | - | tig0045028:5612-5631 | Msa1465200:intergenic | 40.0% | |
| TTCTTGGAGACGAAGAGAAA+CGG | + | tig0045028:5612-5631 | Msa1465200:CDS | 40.0% | |
| !! | TGCATTGATGATGATGTGAG+TGG | + | tig0045028:5656-5675 | Msa1465200:CDS | 40.0% |
| ACCTCAAAAGACTCTCTACC+AGG | + | tig0045028:4652-4671 | Msa1465200:CDS | 45.0% | |
| ! | ACCTGGTAGAGAGTCTTTTG+AGG | - | tig0045028:4656-4675 | Msa1465200:intergenic | 45.0% |
| AAGCGTGAATTTGCGATACC+TGG | - | tig0045028:4673-4692 | Msa1465200:intergenic | 45.0% | |
| !! | GGTTCTTGGGTTGGAGAAAA+CGG | + | tig0045028:5364-5383 | Msa1465200:intron | 45.0% |
| CTCCATCCAGATAAGAATCC+TGG | + | tig0045028:5434-5453 | Msa1465200:CDS | 45.0% | |
| CACCAGGATTCTTATCTGGA+TGG | - | tig0045028:5439-5458 | Msa1465200:intergenic | 45.0% | |
| !! | TAAGGCTGCTTGTTATGCTG+TGG | + | tig0045028:5473-5492 | Msa1465200:intron | 45.0% |
| TCTTGGAGACGAAGAGAAAC+GGG | + | tig0045028:5613-5632 | Msa1465200:CDS | 45.0% | |
| !! | GATGATGTGAGTGGTGTTGT+TGG | + | tig0045028:5665-5684 | Msa1465200:CDS | 45.0% |
| ACCTCAAAAGACTCTCTACC+AGG | + | tig0045028:4652-4671 | Msa1465200:CDS | 45.0% | |
| ! | ACCTGGTAGAGAGTCTTTTG+AGG | - | tig0045028:4656-4675 | Msa1465200:intergenic | 45.0% |
| AAGCGTGAATTTGCGATACC+TGG | - | tig0045028:4673-4692 | Msa1465200:intergenic | 45.0% | |
| !! | GGTTCTTGGGTTGGAGAAAA+CGG | + | tig0045028:5364-5383 | Msa1465200:intron | 45.0% |
| CTCCATCCAGATAAGAATCC+TGG | + | tig0045028:5434-5453 | Msa1465200:CDS | 45.0% | |
| CACCAGGATTCTTATCTGGA+TGG | - | tig0045028:5439-5458 | Msa1465200:intergenic | 45.0% | |
| !! | TAAGGCTGCTTGTTATGCTG+TGG | + | tig0045028:5473-5492 | Msa1465200:intron | 45.0% |
| TCTTGGAGACGAAGAGAAAC+GGG | + | tig0045028:5613-5632 | Msa1465200:CDS | 45.0% | |
| !! | GATGATGTGAGTGGTGTTGT+TGG | + | tig0045028:5665-5684 | Msa1465200:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTATGT+TGG | + | tig0045028:4776-4795 | Msa1465200:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTATGT+TGG | + | tig0045028:4776-4795 | Msa1465200:intron | 5.0% |
| CTGTGTGAAAAATGGCGCCG+AGG | + | tig0045028:4588-4607 | Msa1465200:exon | 55.0% | |
| ! | TGGCGCCGAGGAAGAAAACT+AGG | + | tig0045028:4600-4619 | Msa1465200:CDS | 55.0% |
| ! | GGCGCCGAGGAAGAAAACTA+GGG | + | tig0045028:4601-4620 | Msa1465200:CDS | 55.0% |
| CGGGCTCTCTATGATCAGAC+TGG | + | tig0045028:5632-5651 | Msa1465200:CDS | 55.0% | |
| CTGTGTGAAAAATGGCGCCG+AGG | + | tig0045028:4588-4607 | Msa1465200:exon | 55.0% | |
| ! | TGGCGCCGAGGAAGAAAACT+AGG | + | tig0045028:4600-4619 | Msa1465200:CDS | 55.0% |
| ! | GGCGCCGAGGAAGAAAACTA+GGG | + | tig0045028:4601-4620 | Msa1465200:CDS | 55.0% |
| CGGGCTCTCTATGATCAGAC+TGG | + | tig0045028:5632-5651 | Msa1465200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045028 | gene | 4431 | 5691 | 4431 | ID=Msa1465200;Name=Msa1465200 |
| tig0045028 | mRNA | 4431 | 5691 | 4431 | ID=Msa1465200-mRNA-1;Parent=Msa1465200;Name=Msa1465200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=168|1|0.66|1|1|1|3|0|99 |
| tig0045028 | exon | 4431 | 4673 | 4431 | ID=Msa1465200-mRNA-1:exon:24721;Parent=Msa1465200-mRNA-1 |
| tig0045028 | exon | 5365 | 5463 | 5365 | ID=Msa1465200-mRNA-1:exon:24722;Parent=Msa1465200-mRNA-1 |
| tig0045028 | exon | 5569 | 5691 | 5569 | ID=Msa1465200-mRNA-1:exon:24723;Parent=Msa1465200-mRNA-1 |
| tig0045028 | five_prime_UTR | 4431 | 4598 | 4431 | ID=Msa1465200-mRNA-1:five_prime_utr;Parent=Msa1465200-mRNA-1 |
| tig0045028 | CDS | 4599 | 4673 | 4599 | ID=Msa1465200-mRNA-1:cds;Parent=Msa1465200-mRNA-1 |
| tig0045028 | CDS | 5365 | 5463 | 5365 | ID=Msa1465200-mRNA-1:cds;Parent=Msa1465200-mRNA-1 |
| tig0045028 | CDS | 5569 | 5691 | 5569 | ID=Msa1465200-mRNA-1:cds;Parent=Msa1465200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
