Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797660 | sp|Q058P4|PUB30_ARATH | 74.058 | 451 | 114 | 1 | 1 | 451 | 1 | 448 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797660 | G7K2F8 | 99.557 | 451 | 2 | 0 | 1 | 451 | 1 | 451 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012940 | Msa0797660 | 0.804712 | 1.893427e-49 | -8.615850e-47 |
| Msa0016540 | Msa0797660 | 0.814726 | 1.330086e-51 | -8.615850e-47 |
| Msa0039250 | Msa0797660 | 0.809341 | 1.985103e-50 | -8.615850e-47 |
| Msa0041690 | Msa0797660 | 0.801454 | 8.935529e-49 | -8.615850e-47 |
| Msa0047640 | Msa0797660 | 0.826603 | 2.477844e-54 | -8.615850e-47 |
| Msa0093850 | Msa0797660 | 0.823333 | 1.465255e-53 | -8.615850e-47 |
| Msa0619420 | Msa0797660 | 0.830392 | 3.012919e-55 | -8.615850e-47 |
| Msa0626270 | Msa0797660 | 0.810919 | 9.072028e-51 | -8.615850e-47 |
| Msa0626460 | Msa0797660 | 0.804061 | 2.587805e-49 | -8.615850e-47 |
| Msa0630940 | Msa0797660 | 0.838677 | 2.494208e-57 | -8.615850e-47 |
| Msa0644030 | Msa0797660 | 0.810593 | 1.067245e-50 | -8.615850e-47 |
| Msa0659550 | Msa0797660 | 0.829656 | 4.557320e-55 | -8.615850e-47 |
| Msa0669180 | Msa0797660 | 0.847314 | 1.251107e-59 | -8.615850e-47 |
| Msa0706760 | Msa0797660 | 0.801876 | 7.320901e-49 | -8.615850e-47 |
| Msa0713680 | Msa0797660 | 0.921017 | 6.130884e-88 | -8.615850e-47 |
| Msa0744100 | Msa0797660 | 0.806740 | 7.102578e-50 | -8.615850e-47 |
| Msa0797660 | Msa0804250 | 0.800605 | 1.332386e-48 | -8.615850e-47 |
| Msa0797660 | Msa0825270 | 0.806710 | 7.207768e-50 | -8.615850e-47 |
| Msa0797660 | Msa0870650 | 0.808372 | 3.199132e-50 | -8.615850e-47 |
| Msa0797660 | Msa1072600 | 0.830792 | 2.405502e-55 | -8.615850e-47 |
| Msa0797660 | Msa1076560 | 0.816474 | 5.427047e-52 | -8.615850e-47 |
| Msa0797660 | Msa1123350 | 0.822425 | 2.384837e-53 | -8.615850e-47 |
| Msa0797660 | Msa1127540 | 0.816460 | 5.466276e-52 | -8.615850e-47 |
| Msa0797660 | Msa1127590 | 0.815351 | 9.665689e-52 | -8.615850e-47 |
| Msa0797660 | Msa1329450 | 0.805077 | 1.588651e-49 | -8.615850e-47 |
| Msa0797660 | Msa1356610 | 0.805215 | 1.486563e-49 | -8.615850e-47 |
| Msa0797660 | Msa1371520 | 0.823874 | 1.095131e-53 | -8.615850e-47 |
| Msa0797660 | Msa1373170 | 0.803035 | 4.224640e-49 | -8.615850e-47 |
| Msa0797660 | Msa1373820 | 0.820602 | 6.290535e-53 | -8.615850e-47 |
| Msa0797660 | Msa1393820 | 0.816357 | 5.764725e-52 | -8.615850e-47 |
| Msa0797660 | Msa1403570 | 0.820155 | 7.965790e-53 | -8.615850e-47 |
| Msa0797660 | Msa1409950 | 0.808889 | 2.480832e-50 | -8.615850e-47 |
| Msa0797660 | Msa1411500 | 0.838647 | 2.539463e-57 | -8.615850e-47 |
| Msa0797660 | Msa1411950 | 0.812146 | 4.910495e-51 | -8.615850e-47 |
| Msa0797660 | Msa1465200 | 0.808944 | 2.414839e-50 | -8.615850e-47 |
| Msa0130110 | Msa0797660 | 0.806955 | 6.395751e-50 | -8.615850e-47 |
| Msa0138360 | Msa0797660 | 0.832238 | 1.059577e-55 | -8.615850e-47 |
| Msa0147980 | Msa0797660 | 0.819080 | 1.401059e-52 | -8.615850e-47 |
| Msa0225480 | Msa0797660 | 0.810367 | 1.193849e-50 | -8.615850e-47 |
| Msa0241830 | Msa0797660 | 0.827456 | 1.549263e-54 | -8.615850e-47 |
| Msa0270210 | Msa0797660 | 0.826485 | 2.644257e-54 | -8.615850e-47 |
| Msa0322900 | Msa0797660 | 0.829981 | 3.797352e-55 | -8.615850e-47 |
| Msa0323260 | Msa0797660 | 0.806972 | 6.344951e-50 | -8.615850e-47 |
| Msa0341690 | Msa0797660 | 0.808308 | 3.301026e-50 | -8.615850e-47 |
| Msa0518030 | Msa0797660 | 0.819378 | 1.198871e-52 | -8.615850e-47 |
| Msa0527190 | Msa0797660 | 0.814262 | 1.685335e-51 | -8.615850e-47 |
| Msa0547990 | Msa0797660 | 0.825760 | 3.931154e-54 | -8.615850e-47 |
| Msa0583500 | Msa0797660 | 0.835575 | 1.548995e-56 | -8.615850e-47 |
| Msa0590640 | Msa0797660 | 0.821349 | 4.234110e-53 | -8.615850e-47 |
| Msa0597770 | Msa0797660 | 0.811725 | 6.062769e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797660 | MtrunA17_Chr5g0400971 | 99.557 | 451 | 2 | 0 | 1 | 451 | 1 | 451 | 0.0 | 911 |
| Msa0797660 | MtrunA17_Chr1g0152291 | 62.899 | 407 | 145 | 4 | 51 | 451 | 28 | 434 | 1.85e-175 | 498 |
| Msa0797660 | MtrunA17_Chr8g0384041 | 30.653 | 398 | 248 | 10 | 63 | 434 | 5 | 400 | 1.70e-39 | 147 |
| Msa0797660 | MtrunA17_Chr4g0044631 | 28.535 | 389 | 264 | 9 | 55 | 430 | 1 | 388 | 1.89e-35 | 135 |
| Msa0797660 | MtrunA17_Chr3g0129811 | 29.383 | 405 | 254 | 8 | 58 | 434 | 71 | 471 | 4.43e-35 | 136 |
| Msa0797660 | MtrunA17_Chr5g0434171 | 29.676 | 401 | 227 | 11 | 67 | 430 | 35 | 417 | 8.27e-33 | 129 |
| Msa0797660 | MtrunA17_Chr6g0479261 | 28.784 | 403 | 236 | 10 | 67 | 430 | 25 | 415 | 9.34e-33 | 129 |
| Msa0797660 | MtrunA17_Chr5g0420471 | 29.529 | 403 | 233 | 11 | 67 | 430 | 25 | 415 | 2.85e-32 | 127 |
| Msa0797660 | MtrunA17_Chr7g0267501 | 27.500 | 400 | 263 | 8 | 66 | 438 | 7 | 406 | 1.65e-31 | 125 |
| Msa0797660 | MtrunA17_Chr2g0322021 | 28.645 | 391 | 257 | 9 | 66 | 438 | 5 | 391 | 4.43e-30 | 120 |
| Msa0797660 | MtrunA17_Chr1g0199321 | 27.193 | 342 | 218 | 6 | 67 | 388 | 247 | 577 | 5.60e-30 | 122 |
| Msa0797660 | MtrunA17_Chr4g0031431 | 27.049 | 366 | 245 | 7 | 67 | 417 | 255 | 613 | 8.08e-29 | 119 |
| Msa0797660 | MtrunA17_Chr3g0110121 | 26.615 | 387 | 256 | 7 | 67 | 430 | 36 | 417 | 7.58e-28 | 115 |
| Msa0797660 | MtrunA17_Chr7g0237931 | 27.177 | 379 | 250 | 11 | 67 | 430 | 237 | 604 | 1.40e-26 | 112 |
| Msa0797660 | MtrunA17_Chr4g0044411 | 27.195 | 353 | 228 | 11 | 67 | 399 | 273 | 616 | 1.54e-25 | 109 |
| Msa0797660 | MtrunA17_Chr7g0248251 | 25.916 | 382 | 240 | 8 | 67 | 425 | 274 | 635 | 1.12e-24 | 107 |
| Msa0797660 | MtrunA17_Chr1g0177261 | 25.899 | 417 | 265 | 9 | 66 | 438 | 6 | 422 | 2.57e-24 | 104 |
| Msa0797660 | MtrunA17_Chr1g0177281 | 25.899 | 417 | 265 | 9 | 66 | 438 | 6 | 422 | 3.45e-24 | 104 |
| Msa0797660 | MtrunA17_Chr1g0177301 | 26.768 | 396 | 244 | 15 | 66 | 429 | 5 | 386 | 1.55e-23 | 102 |
| Msa0797660 | MtrunA17_Chr1g0177271 | 25.659 | 417 | 266 | 9 | 66 | 438 | 6 | 422 | 1.98e-23 | 102 |
| Msa0797660 | MtrunA17_Chr5g0437411 | 25.281 | 356 | 226 | 6 | 67 | 389 | 293 | 641 | 1.04e-21 | 98.2 |
| Msa0797660 | MtrunA17_Chr4g0059201 | 27.273 | 363 | 232 | 12 | 52 | 388 | 303 | 659 | 1.64e-20 | 94.7 |
| Msa0797660 | MtrunA17_Chr4g0025501 | 22.803 | 421 | 272 | 12 | 66 | 448 | 5 | 410 | 2.28e-20 | 92.8 |
| Msa0797660 | MtrunA17_Chr7g0275081 | 26.590 | 346 | 213 | 10 | 68 | 388 | 79 | 408 | 9.48e-20 | 91.3 |
| Msa0797660 | MtrunA17_Chr2g0284461 | 26.241 | 282 | 185 | 5 | 67 | 327 | 292 | 571 | 2.18e-19 | 91.3 |
| Msa0797660 | MtrunA17_Chr7g0234671 | 25.882 | 340 | 222 | 11 | 68 | 388 | 79 | 407 | 1.18e-18 | 88.2 |
| Msa0797660 | MtrunA17_Chr5g0413681 | 27.893 | 337 | 211 | 10 | 38 | 351 | 255 | 582 | 5.96e-18 | 86.7 |
| Msa0797660 | MtrunA17_Chr2g0280671 | 25.455 | 275 | 188 | 5 | 73 | 337 | 21 | 288 | 1.22e-16 | 81.3 |
| Msa0797660 | MtrunA17_Chr1g0189811 | 27.138 | 269 | 176 | 8 | 67 | 320 | 63 | 326 | 1.52e-16 | 81.6 |
| Msa0797660 | MtrunA17_Chr3g0122721 | 50.000 | 72 | 36 | 0 | 68 | 139 | 281 | 352 | 6.58e-16 | 80.5 |
| Msa0797660 | MtrunA17_Chr4g0013091 | 25.292 | 257 | 158 | 7 | 60 | 287 | 307 | 558 | 3.52e-15 | 78.2 |
| Msa0797660 | MtrunA17_Chr3g0117851 | 26.809 | 235 | 156 | 5 | 68 | 286 | 276 | 510 | 9.28e-15 | 76.6 |
| Msa0797660 | MtrunA17_Chr1g0183781 | 48.485 | 66 | 34 | 0 | 68 | 133 | 242 | 307 | 4.08e-14 | 74.7 |
| Msa0797660 | MtrunA17_Chr4g0048811 | 26.829 | 287 | 184 | 10 | 66 | 342 | 4 | 274 | 4.14e-14 | 73.2 |
| Msa0797660 | MtrunA17_Chr3g0106931 | 44.578 | 83 | 46 | 0 | 51 | 133 | 217 | 299 | 4.52e-14 | 74.7 |
| Msa0797660 | MtrunA17_Chr8g0373031 | 46.970 | 66 | 35 | 0 | 68 | 133 | 276 | 341 | 3.57e-13 | 71.6 |
| Msa0797660 | MtrunA17_Chr7g0261371 | 46.269 | 67 | 36 | 0 | 67 | 133 | 241 | 307 | 4.72e-13 | 71.6 |
| Msa0797660 | MtrunA17_Chr1g0198984 | 53.704 | 54 | 25 | 0 | 80 | 133 | 1 | 54 | 9.53e-13 | 64.7 |
| Msa0797660 | MtrunA17_Chr8g0377151 | 45.714 | 70 | 38 | 0 | 68 | 137 | 283 | 352 | 2.14e-12 | 69.3 |
| Msa0797660 | MtrunA17_Chr8g0390311 | 47.761 | 67 | 34 | 1 | 68 | 133 | 396 | 462 | 2.29e-12 | 69.7 |
| Msa0797660 | MtrunA17_Chr3g0144071 | 29.921 | 127 | 81 | 2 | 45 | 163 | 8 | 134 | 2.73e-12 | 68.9 |
| Msa0797660 | MtrunA17_Chr1g0196911 | 41.237 | 97 | 54 | 2 | 68 | 162 | 507 | 602 | 3.04e-12 | 69.3 |
| Msa0797660 | MtrunA17_Chr7g0214471 | 35.398 | 113 | 54 | 3 | 67 | 161 | 595 | 706 | 1.88e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797660 | AT3G49810.1 | 74.058 | 451 | 114 | 1 | 1 | 451 | 1 | 448 | 0.0 | 668 |
| Msa0797660 | AT5G65920.1 | 71.397 | 451 | 122 | 1 | 1 | 451 | 1 | 444 | 0.0 | 649 |
| Msa0797660 | AT5G65920.2 | 71.397 | 451 | 122 | 1 | 1 | 451 | 1 | 444 | 0.0 | 649 |
| Msa0797660 | AT3G19380.1 | 30.366 | 382 | 241 | 11 | 57 | 416 | 3 | 381 | 1.38e-40 | 150 |
| Msa0797660 | AT1G49780.1 | 29.730 | 407 | 260 | 9 | 66 | 449 | 13 | 416 | 2.02e-37 | 142 |
| Msa0797660 | AT2G35930.1 | 26.617 | 402 | 268 | 9 | 63 | 443 | 8 | 403 | 7.23e-35 | 134 |
| Msa0797660 | AT5G64660.1 | 29.877 | 405 | 244 | 15 | 63 | 434 | 5 | 402 | 1.85e-33 | 130 |
| Msa0797660 | AT3G18710.1 | 28.244 | 393 | 255 | 10 | 67 | 436 | 12 | 400 | 1.41e-32 | 128 |
| Msa0797660 | AT3G54850.1 | 27.344 | 384 | 247 | 10 | 67 | 430 | 248 | 619 | 9.41e-31 | 125 |
| Msa0797660 | AT5G09800.1 | 26.794 | 418 | 259 | 13 | 60 | 447 | 4 | 404 | 5.75e-30 | 120 |
| Msa0797660 | AT1G23030.1 | 27.746 | 346 | 226 | 9 | 67 | 398 | 241 | 576 | 4.59e-29 | 120 |
| Msa0797660 | AT1G66160.1 | 26.753 | 385 | 260 | 8 | 60 | 430 | 27 | 403 | 1.95e-27 | 114 |
| Msa0797660 | AT3G52450.1 | 25.837 | 418 | 261 | 10 | 58 | 430 | 1 | 414 | 5.69e-26 | 110 |
| Msa0797660 | AT1G71020.2 | 25.714 | 350 | 237 | 7 | 67 | 398 | 95 | 439 | 2.20e-25 | 108 |
| Msa0797660 | AT3G46510.1 | 25.195 | 385 | 257 | 7 | 67 | 432 | 256 | 628 | 2.35e-25 | 109 |
| Msa0797660 | AT1G71020.1 | 25.714 | 350 | 237 | 7 | 67 | 398 | 243 | 587 | 3.87e-25 | 108 |
| Msa0797660 | AT5G42340.1 | 29.339 | 242 | 147 | 5 | 67 | 302 | 290 | 513 | 5.35e-25 | 108 |
| Msa0797660 | AT2G28830.1 | 25.588 | 340 | 229 | 6 | 68 | 388 | 185 | 519 | 1.80e-23 | 103 |
| Msa0797660 | AT5G37490.1 | 23.684 | 380 | 274 | 5 | 67 | 430 | 31 | 410 | 4.13e-20 | 92.8 |
| Msa0797660 | AT1G66160.2 | 24.675 | 385 | 252 | 9 | 60 | 430 | 27 | 387 | 1.10e-18 | 88.2 |
| Msa0797660 | AT1G29340.1 | 30.978 | 184 | 108 | 3 | 67 | 232 | 305 | 487 | 4.43e-18 | 87.4 |
| Msa0797660 | AT3G07360.1 | 29.004 | 231 | 138 | 8 | 55 | 261 | 57 | 285 | 1.67e-16 | 82.0 |
| Msa0797660 | AT5G01830.1 | 27.143 | 280 | 184 | 6 | 22 | 286 | 230 | 504 | 1.79e-16 | 82.4 |
| Msa0797660 | AT3G11840.1 | 53.247 | 77 | 34 | 2 | 58 | 133 | 1 | 76 | 8.55e-16 | 79.7 |
| Msa0797660 | AT4G21350.1 | 25.826 | 333 | 227 | 8 | 66 | 388 | 4 | 326 | 1.77e-15 | 78.2 |
| Msa0797660 | AT1G67530.2 | 51.429 | 70 | 34 | 0 | 68 | 137 | 273 | 342 | 9.96e-15 | 77.0 |
| Msa0797660 | AT1G67530.1 | 51.429 | 70 | 34 | 0 | 68 | 137 | 273 | 342 | 9.96e-15 | 77.0 |
| Msa0797660 | AT1G67530.4 | 51.429 | 70 | 34 | 0 | 68 | 137 | 273 | 342 | 9.96e-15 | 77.0 |
| Msa0797660 | AT1G67530.3 | 51.429 | 70 | 34 | 0 | 68 | 137 | 273 | 342 | 1.05e-14 | 76.6 |
| Msa0797660 | AT1G10560.1 | 25.000 | 312 | 199 | 8 | 71 | 355 | 292 | 595 | 1.37e-14 | 76.6 |
| Msa0797660 | AT1G24330.1 | 50.000 | 70 | 35 | 0 | 68 | 137 | 276 | 345 | 4.44e-14 | 75.1 |
| Msa0797660 | AT1G24330.2 | 50.000 | 70 | 35 | 0 | 68 | 137 | 276 | 345 | 4.44e-14 | 75.1 |
| Msa0797660 | AT1G60190.1 | 24.348 | 345 | 223 | 11 | 73 | 388 | 284 | 619 | 4.81e-14 | 74.7 |
| Msa0797660 | AT1G27910.1 | 50.000 | 70 | 35 | 0 | 68 | 137 | 280 | 349 | 7.13e-14 | 74.3 |
| Msa0797660 | AT5G67340.1 | 46.269 | 67 | 36 | 0 | 67 | 133 | 240 | 306 | 2.47e-12 | 69.7 |
| Msa0797660 | AT5G67340.2 | 46.269 | 67 | 36 | 0 | 67 | 133 | 240 | 306 | 2.47e-12 | 69.7 |
| Msa0797660 | AT3G54790.2 | 41.176 | 68 | 40 | 0 | 67 | 134 | 202 | 269 | 4.72e-12 | 68.6 |
| Msa0797660 | AT2G23140.1 | 46.032 | 63 | 34 | 0 | 71 | 133 | 237 | 299 | 4.86e-12 | 68.6 |
| Msa0797660 | AT2G23140.2 | 46.032 | 63 | 34 | 0 | 71 | 133 | 234 | 296 | 5.03e-12 | 68.6 |
| Msa0797660 | AT2G23140.4 | 46.032 | 63 | 34 | 0 | 71 | 133 | 234 | 296 | 5.03e-12 | 68.6 |
| Msa0797660 | AT2G23140.3 | 46.032 | 63 | 34 | 0 | 71 | 133 | 45 | 107 | 5.13e-12 | 68.6 |
| Msa0797660 | AT2G23140.5 | 46.032 | 63 | 34 | 0 | 71 | 133 | 45 | 107 | 5.13e-12 | 68.6 |
| Msa0797660 | AT3G54790.3 | 41.176 | 68 | 40 | 0 | 67 | 134 | 238 | 305 | 6.08e-12 | 68.6 |
| Msa0797660 | AT3G54790.1 | 41.176 | 68 | 40 | 0 | 67 | 134 | 238 | 305 | 6.08e-12 | 68.6 |
| Msa0797660 | AT5G65500.1 | 43.056 | 72 | 41 | 0 | 66 | 137 | 714 | 785 | 4.04e-11 | 65.9 |
| Msa0797660 | AT5G65500.2 | 43.056 | 72 | 41 | 0 | 66 | 137 | 722 | 793 | 4.09e-11 | 65.9 |
| Msa0797660 | AT5G18330.1 | 23.585 | 318 | 215 | 11 | 13 | 320 | 26 | 325 | 4.73e-11 | 65.1 |
Find 98 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCCAGCCATAGTTTAT+TGG | 0.212618 | 5_3:-9886345 | Msa0797660:CDS |
| GCAGATTGTTGTTTCAATAT+TGG | 0.233260 | 5_3:+9885906 | None:intergenic |
| GGAATTAGCCCTTTGTGTTT+TGG | 0.251271 | 5_3:-9886153 | Msa0797660:CDS |
| TGCATTGGTTCAAGAGAAAT+TGG | 0.251419 | 5_3:+9886938 | None:intergenic |
| CTCCAAACACAACACTTTAT+AGG | 0.268814 | 5_3:-9886796 | Msa0797660:CDS |
| CTATGTATCAGCCTTCTAAA+AGG | 0.293724 | 5_3:-9887153 | Msa0797660:CDS |
| TGTCCAGTGCAAAGAGTAAC+AGG | 0.310547 | 5_3:+9886911 | None:intergenic |
| TACAACTATGCAAGAGCTTT+GGG | 0.339571 | 5_3:-9886831 | Msa0797660:CDS |
| CCAACAGCATGTGAAGTAAA+AGG | 0.340191 | 5_3:+9886551 | None:intergenic |
| CAGAACAGTGTGCTTCTATA+AGG | 0.348100 | 5_3:-9886255 | Msa0797660:CDS |
| ACCTGCAAAGATTTCTTTGA+TGG | 0.353869 | 5_3:-9886462 | Msa0797660:CDS |
| GAGAATGTTGTTCCTCTCAT+AGG | 0.363619 | 5_3:+9886886 | None:intergenic |
| TCAATCCAACCAATAAACTA+TGG | 0.369818 | 5_3:+9886336 | None:intergenic |
| GCTGTTGGTTCTGAAGTTAT+TGG | 0.374377 | 5_3:-9886536 | Msa0797660:CDS |
| GGGTATGAGGGTGGTGGTGA+TGG | 0.376806 | 5_3:-9887118 | Msa0797660:CDS |
| TCGTCGATTGCCGTTGATGC+AGG | 0.377688 | 5_3:-9885972 | Msa0797660:CDS |
| GTTGATTGTGGTGGTATTGT+AGG | 0.378694 | 5_3:-9887046 | Msa0797660:CDS |
| TTCAAAGCTACCCTGCCTTC+AGG | 0.379046 | 5_3:+9886113 | None:intergenic |
| AACCTATAAAGTGTTGTGTT+TGG | 0.379505 | 5_3:+9886794 | None:intergenic |
| ACCATCAAAGAAATCTTTGC+AGG | 0.386948 | 5_3:+9886461 | None:intergenic |
| AGCTGTGAAAGATGGGGTTT+TGG | 0.389850 | 5_3:-9887074 | Msa0797660:CDS |
| CAAAGCTCTTGCATAGTTGT+AGG | 0.392894 | 5_3:+9886833 | None:intergenic |
| AGCTAGAGTTCATGCTTTGA+AGG | 0.394200 | 5_3:-9886663 | Msa0797660:CDS |
| CAATTAGTTGAATTGTTGTC+TGG | 0.396249 | 5_3:-9886194 | Msa0797660:CDS |
| TCAGCCTTCTAAAAGGGATA+TGG | 0.401063 | 5_3:-9887146 | Msa0797660:CDS |
| CTACAACTATGCAAGAGCTT+TGG | 0.413732 | 5_3:-9886832 | Msa0797660:CDS |
| ATTGTAGGAACTGGTGTTGT+TGG | 0.418341 | 5_3:-9887031 | Msa0797660:CDS |
| TGAAGGCAGGGTAGCTTTGA+AGG | 0.418617 | 5_3:-9886111 | Msa0797660:CDS |
| GGATATGGTTGTTGGGTATG+AGG | 0.419887 | 5_3:-9887131 | Msa0797660:CDS |
| AGTTGAATTGTTGTCTGGTA+TGG | 0.429978 | 5_3:-9886189 | Msa0797660:CDS |
| CCAGTGTCATTGGATGGTTC+TGG | 0.433464 | 5_3:+9885818 | None:intergenic |
| TCTAAAAGGGATATGGTTGT+TGG | 0.433712 | 5_3:-9887139 | Msa0797660:CDS |
| GGAGACACTCAAGAAGGTTA+AGG | 0.438920 | 5_3:-9886690 | Msa0797660:CDS |
| ATCAAAAGTCTCACCATGAT+AGG | 0.446610 | 5_3:+9886071 | None:intergenic |
| AGCGGCAAGCCCTGCATCAA+CGG | 0.453178 | 5_3:+9885962 | None:intergenic |
| TCCAACCAATAAACTATGGC+TGG | 0.454386 | 5_3:+9886340 | None:intergenic |
| TGGTATGGACCATGATTGTT+TGG | 0.458739 | 5_3:-9886174 | Msa0797660:CDS |
| TGATGGTCAGATTCTAGATC+TGG | 0.470143 | 5_3:-9887101 | Msa0797660:CDS |
| CTGGACACAGCTGTGAAAGA+TGG | 0.472189 | 5_3:-9887082 | Msa0797660:CDS |
| CTAAAAGGGATATGGTTGTT+GGG | 0.472206 | 5_3:-9887138 | Msa0797660:CDS |
| TGGATTGATGAGGCTTGTTA+AGG | 0.477377 | 5_3:-9886321 | Msa0797660:CDS |
| CATTCTCAAATGGTTTAACA+TGG | 0.477905 | 5_3:-9886870 | Msa0797660:CDS |
| AAGTGTTGTGTTTGGAGTGA+TGG | 0.479659 | 5_3:+9886802 | None:intergenic |
| CGTCGATTGCCGTTGATGCA+GGG | 0.480126 | 5_3:-9885971 | Msa0797660:CDS |
| TGGACACAGCTGTGAAAGAT+GGG | 0.480846 | 5_3:-9887081 | Msa0797660:CDS |
| TCCAGCCATAGTTTATTGGT+TGG | 0.483049 | 5_3:-9886341 | Msa0797660:CDS |
| TTTATAGGTTAATATATACT+TGG | 0.486014 | 5_3:-9886781 | Msa0797660:CDS |
| AGAGGAACAACATTCTCAAA+TGG | 0.486614 | 5_3:-9886880 | Msa0797660:CDS |
| GCACGTAAGTCTGTGATTGA+TGG | 0.491037 | 5_3:-9886608 | Msa0797660:CDS |
| TTGGGTGGTGTTGATTGTGG+TGG | 0.491523 | 5_3:-9887055 | Msa0797660:CDS |
| TGTTAACACCATACCTATCA+TGG | 0.494074 | 5_3:-9886084 | Msa0797660:CDS |
| CATAGCAATGGAATCTGTCC+TGG | 0.495678 | 5_3:-9886290 | Msa0797660:CDS |
| GGCAATCGACGAACACTCCT+CGG | 0.495695 | 5_3:+9885983 | None:intergenic |
| AGGAAGAGCTTCTGAGCTTG+TGG | 0.496986 | 5_3:-9886711 | Msa0797660:CDS |
| ATGGTTGTTGGGTATGAGGG+TGG | 0.497015 | 5_3:-9887127 | Msa0797660:CDS |
| TGTGGTGGTATTGTAGGAAC+TGG | 0.497597 | 5_3:-9887040 | Msa0797660:CDS |
| GTTGATTGAAACGTTAATTG+AGG | 0.502694 | 5_3:-9886390 | Msa0797660:CDS |
| GAGACACTCAAGAAGGTTAA+GGG | 0.509193 | 5_3:-9886689 | Msa0797660:CDS |
| GATATGGTTGTTGGGTATGA+GGG | 0.510561 | 5_3:-9887130 | Msa0797660:CDS |
| TATGTATCAGCCTTCTAAAA+GGG | 0.514271 | 5_3:-9887152 | Msa0797660:CDS |
| CTTACACTTGGAAATGAAGA+TGG | 0.515200 | 5_3:+9885845 | None:intergenic |
| GATGGTTGATATCTTGAATG+AGG | 0.519499 | 5_3:-9886444 | Msa0797660:CDS |
| CTCCTTCTTGTGATTCAAAG+TGG | 0.522084 | 5_3:-9885936 | Msa0797660:CDS |
| TATCGTCAATACCTGAAGGC+AGG | 0.524187 | 5_3:-9886124 | Msa0797660:CDS |
| GACCCTGTTACTCTTTGCAC+TGG | 0.524861 | 5_3:-9886914 | Msa0797660:CDS |
| GAAGGAGCTTCATCAAGTTG+TGG | 0.525660 | 5_3:-9886645 | Msa0797660:CDS |
| AAGAGGTCTGAAGATGTTCA+AGG | 0.532675 | 5_3:-9886731 | Msa0797660:CDS |
| GTTGTTGGGTATGAGGGTGG+TGG | 0.533466 | 5_3:-9887124 | Msa0797660:CDS |
| TTTAATCCAGTGTCATTGGA+TGG | 0.544882 | 5_3:+9885812 | None:intergenic |
| GCAATCGACGAACACTCCTC+GGG | 0.548555 | 5_3:+9885984 | None:intergenic |
| GGGCTAATTCCAAACAATCA+TGG | 0.556734 | 5_3:+9886165 | None:intergenic |
| AGAGTAACAGGGTCTTGCAT+TGG | 0.556765 | 5_3:+9886923 | None:intergenic |
| TAACGAATCCAAAACACAAA+GGG | 0.557474 | 5_3:+9886145 | None:intergenic |
| AAGTCTCACCATGATAGGTA+TGG | 0.557498 | 5_3:+9886076 | None:intergenic |
| GTTTATTGGTTGGATTGATG+AGG | 0.566504 | 5_3:-9886331 | Msa0797660:CDS |
| GGTTCTGGTAAGCTTACACT+TGG | 0.573632 | 5_3:+9885833 | None:intergenic |
| AGTACTTGTTGATGAAGAAG+AGG | 0.579589 | 5_3:-9886748 | Msa0797660:CDS |
| TGTTTGCAAGCTCGCACCCG+AGG | 0.590908 | 5_3:-9886000 | Msa0797660:CDS |
| AATCACAAGAAGGAGCTTAG+CGG | 0.593465 | 5_3:+9885944 | None:intergenic |
| ATGGTTGATATCTTGAATGA+GGG | 0.598018 | 5_3:-9886443 | Msa0797660:CDS |
| TATAGAAGCACACTGTTCTG+AGG | 0.600791 | 5_3:+9886258 | None:intergenic |
| ATCGTCAATACCTGAAGGCA+GGG | 0.601834 | 5_3:-9886123 | Msa0797660:CDS |
| AACCACTTTGAATCACAAGA+AGG | 0.602714 | 5_3:+9885934 | None:intergenic |
| GTTCTGAGGAGGCTTAATCC+AGG | 0.612490 | 5_3:+9886272 | None:intergenic |
| ATTCTCAAATGGTTTAACAT+GGG | 0.615647 | 5_3:-9886869 | Msa0797660:CDS |
| AGAAGCACACTGTTCTGAGG+AGG | 0.626107 | 5_3:+9886261 | None:intergenic |
| ATTGGACAAATGAAAACACT+TGG | 0.634832 | 5_3:+9886956 | None:intergenic |
| TCGTTATCGTCAATACCTGA+AGG | 0.636371 | 5_3:-9886128 | Msa0797660:CDS |
| ACTATGGCTGGAGATAATCT+CGG | 0.640439 | 5_3:+9886352 | None:intergenic |
| AAGTCTGTGATTGATGGAGG+TGG | 0.645793 | 5_3:-9886602 | Msa0797660:CDS |
| CGTAAGTCTGTGATTGATGG+AGG | 0.663245 | 5_3:-9886605 | Msa0797660:CDS |
| GCTTGTGGAGACACTCAAGA+AGG | 0.663911 | 5_3:-9886696 | Msa0797660:CDS |
| AAGGATAAGAGACATAGCAA+TGG | 0.668679 | 5_3:-9886302 | Msa0797660:CDS |
| GCACTGGACAAACCTATGAG+AGG | 0.669601 | 5_3:-9886898 | Msa0797660:CDS |
| ATAACGAATCCAAAACACAA+AGG | 0.671691 | 5_3:+9886144 | None:intergenic |
| GGACACAGCTGTGAAAGATG+GGG | 0.688951 | 5_3:-9887080 | Msa0797660:CDS |
| AGACTAAAATCAGTTGCACG+CGG | 0.721441 | 5_3:-9886412 | Msa0797660:CDS |
| GTCCAGTGCAAAGAGTAACA+GGG | 0.727176 | 5_3:+9886912 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAGGTTAATATATACT+TGG | - | chr5_3:9886200-9886219 | Msa0797660:CDS | 15.0% |
| !! | TTTATAGGTTAATATATACT+TGG | - | chr5_3:9886200-9886219 | Msa0797660:CDS | 15.0% |
| ! | ATTCTCAAATGGTTTAACAT+GGG | - | chr5_3:9886112-9886131 | Msa0797660:CDS | 25.0% |
| !! | AAGATTTTGTTAGTTAGCAT+TGG | - | chr5_3:9886754-9886773 | Msa0797660:CDS | 25.0% |
| ! | ATTCTCAAATGGTTTAACAT+GGG | - | chr5_3:9886112-9886131 | Msa0797660:CDS | 25.0% |
| !! | AAGATTTTGTTAGTTAGCAT+TGG | - | chr5_3:9886754-9886773 | Msa0797660:CDS | 25.0% |
| ! | TATGTATCAGCCTTCTAAAA+GGG | - | chr5_3:9885829-9885848 | Msa0797660:CDS | 30.0% |
| ATTGGACAAATGAAAACACT+TGG | + | chr5_3:9886028-9886047 | None:intergenic | 30.0% | |
| CATTCTCAAATGGTTTAACA+TGG | - | chr5_3:9886111-9886130 | Msa0797660:CDS | 30.0% | |
| !! | AACCTATAAAGTGTTGTGTT+TGG | + | chr5_3:9886190-9886209 | None:intergenic | 30.0% |
| ! | TCTGTTTTGTCTTCTTTACT+TGG | - | chr5_3:9886406-9886425 | Msa0797660:CDS | 30.0% |
| ! | ATGGTTGATATCTTGAATGA+GGG | - | chr5_3:9886538-9886557 | Msa0797660:CDS | 30.0% |
| GTTGATTGAAACGTTAATTG+AGG | - | chr5_3:9886591-9886610 | Msa0797660:CDS | 30.0% | |
| TCAATCCAACCAATAAACTA+TGG | + | chr5_3:9886648-9886667 | None:intergenic | 30.0% | |
| CAATTAGTTGAATTGTTGTC+TGG | - | chr5_3:9886787-9886806 | Msa0797660:CDS | 30.0% | |
| TAACGAATCCAAAACACAAA+GGG | + | chr5_3:9886839-9886858 | None:intergenic | 30.0% | |
| ATAACGAATCCAAAACACAA+AGG | + | chr5_3:9886840-9886859 | None:intergenic | 30.0% | |
| ! | AGTATGCATTGTCAATTTTG+TGG | - | chr5_3:9886956-9886975 | Msa0797660:CDS | 30.0% |
| !! | GCAGATTGTTGTTTCAATAT+TGG | + | chr5_3:9887078-9887097 | None:intergenic | 30.0% |
| ! | TATGTATCAGCCTTCTAAAA+GGG | - | chr5_3:9885829-9885848 | Msa0797660:CDS | 30.0% |
| ATTGGACAAATGAAAACACT+TGG | + | chr5_3:9886028-9886047 | None:intergenic | 30.0% | |
| CATTCTCAAATGGTTTAACA+TGG | - | chr5_3:9886111-9886130 | Msa0797660:CDS | 30.0% | |
| !! | AACCTATAAAGTGTTGTGTT+TGG | + | chr5_3:9886190-9886209 | None:intergenic | 30.0% |
| ! | TCTGTTTTGTCTTCTTTACT+TGG | - | chr5_3:9886406-9886425 | Msa0797660:CDS | 30.0% |
| ! | ATGGTTGATATCTTGAATGA+GGG | - | chr5_3:9886538-9886557 | Msa0797660:CDS | 30.0% |
| GTTGATTGAAACGTTAATTG+AGG | - | chr5_3:9886591-9886610 | Msa0797660:CDS | 30.0% | |
| TCAATCCAACCAATAAACTA+TGG | + | chr5_3:9886648-9886667 | None:intergenic | 30.0% | |
| CAATTAGTTGAATTGTTGTC+TGG | - | chr5_3:9886787-9886806 | Msa0797660:CDS | 30.0% | |
| TAACGAATCCAAAACACAAA+GGG | + | chr5_3:9886839-9886858 | None:intergenic | 30.0% | |
| ATAACGAATCCAAAACACAA+AGG | + | chr5_3:9886840-9886859 | None:intergenic | 30.0% | |
| ! | AGTATGCATTGTCAATTTTG+TGG | - | chr5_3:9886956-9886975 | Msa0797660:CDS | 30.0% |
| !! | GCAGATTGTTGTTTCAATAT+TGG | + | chr5_3:9887078-9887097 | None:intergenic | 30.0% |
| !! | CTTTTAGAAGGCTGATACAT+AGG | + | chr5_3:9885830-9885849 | None:intergenic | 35.0% |
| CTATGTATCAGCCTTCTAAA+AGG | - | chr5_3:9885828-9885847 | Msa0797660:CDS | 35.0% | |
| ! | ACAACCATATCCCTTTTAGA+AGG | + | chr5_3:9885842-9885861 | None:intergenic | 35.0% |
| TCTAAAAGGGATATGGTTGT+TGG | - | chr5_3:9885842-9885861 | Msa0797660:CDS | 35.0% | |
| CTAAAAGGGATATGGTTGTT+GGG | - | chr5_3:9885843-9885862 | Msa0797660:CDS | 35.0% | |
| !! | TGCATTGGTTCAAGAGAAAT+TGG | + | chr5_3:9886046-9886065 | None:intergenic | 35.0% |
| AGAGGAACAACATTCTCAAA+TGG | - | chr5_3:9886101-9886120 | Msa0797660:CDS | 35.0% | |
| TACAACTATGCAAGAGCTTT+GGG | - | chr5_3:9886150-9886169 | Msa0797660:CDS | 35.0% | |
| CTCCAAACACAACACTTTAT+AGG | - | chr5_3:9886185-9886204 | Msa0797660:CDS | 35.0% | |
| ! | AGTACTTGTTGATGAAGAAG+AGG | - | chr5_3:9886233-9886252 | Msa0797660:CDS | 35.0% |
| ACCTGCAAAGATTTCTTTGA+TGG | - | chr5_3:9886519-9886538 | Msa0797660:CDS | 35.0% | |
| ACCATCAAAGAAATCTTTGC+AGG | + | chr5_3:9886523-9886542 | None:intergenic | 35.0% | |
| ! | GATGGTTGATATCTTGAATG+AGG | - | chr5_3:9886537-9886556 | Msa0797660:CDS | 35.0% |
| TATCTCCAGCCATAGTTTAT+TGG | - | chr5_3:9886636-9886655 | Msa0797660:CDS | 35.0% | |
| ! | GTTTATTGGTTGGATTGATG+AGG | - | chr5_3:9886650-9886669 | Msa0797660:CDS | 35.0% |
| AAGGATAAGAGACATAGCAA+TGG | - | chr5_3:9886679-9886698 | Msa0797660:CDS | 35.0% | |
| AGTTGAATTGTTGTCTGGTA+TGG | - | chr5_3:9886792-9886811 | Msa0797660:CDS | 35.0% | |
| TGTTAACACCATACCTATCA+TGG | - | chr5_3:9886897-9886916 | Msa0797660:CDS | 35.0% | |
| ATCAAAAGTCTCACCATGAT+AGG | + | chr5_3:9886913-9886932 | None:intergenic | 35.0% | |
| AACCACTTTGAATCACAAGA+AGG | + | chr5_3:9887050-9887069 | None:intergenic | 35.0% | |
| CTTACACTTGGAAATGAAGA+TGG | + | chr5_3:9887139-9887158 | None:intergenic | 35.0% | |
| !! | CTTTTAGAAGGCTGATACAT+AGG | + | chr5_3:9885830-9885849 | None:intergenic | 35.0% |
| CTATGTATCAGCCTTCTAAA+AGG | - | chr5_3:9885828-9885847 | Msa0797660:CDS | 35.0% | |
| ! | ACAACCATATCCCTTTTAGA+AGG | + | chr5_3:9885842-9885861 | None:intergenic | 35.0% |
| TCTAAAAGGGATATGGTTGT+TGG | - | chr5_3:9885842-9885861 | Msa0797660:CDS | 35.0% | |
| CTAAAAGGGATATGGTTGTT+GGG | - | chr5_3:9885843-9885862 | Msa0797660:CDS | 35.0% | |
| !! | TGCATTGGTTCAAGAGAAAT+TGG | + | chr5_3:9886046-9886065 | None:intergenic | 35.0% |
| AGAGGAACAACATTCTCAAA+TGG | - | chr5_3:9886101-9886120 | Msa0797660:CDS | 35.0% | |
| TACAACTATGCAAGAGCTTT+GGG | - | chr5_3:9886150-9886169 | Msa0797660:CDS | 35.0% | |
| CTCCAAACACAACACTTTAT+AGG | - | chr5_3:9886185-9886204 | Msa0797660:CDS | 35.0% | |
| ! | AGTACTTGTTGATGAAGAAG+AGG | - | chr5_3:9886233-9886252 | Msa0797660:CDS | 35.0% |
| ACCTGCAAAGATTTCTTTGA+TGG | - | chr5_3:9886519-9886538 | Msa0797660:CDS | 35.0% | |
| ACCATCAAAGAAATCTTTGC+AGG | + | chr5_3:9886523-9886542 | None:intergenic | 35.0% | |
| ! | GATGGTTGATATCTTGAATG+AGG | - | chr5_3:9886537-9886556 | Msa0797660:CDS | 35.0% |
| TATCTCCAGCCATAGTTTAT+TGG | - | chr5_3:9886636-9886655 | Msa0797660:CDS | 35.0% | |
| ! | GTTTATTGGTTGGATTGATG+AGG | - | chr5_3:9886650-9886669 | Msa0797660:CDS | 35.0% |
| AAGGATAAGAGACATAGCAA+TGG | - | chr5_3:9886679-9886698 | Msa0797660:CDS | 35.0% | |
| AGTTGAATTGTTGTCTGGTA+TGG | - | chr5_3:9886792-9886811 | Msa0797660:CDS | 35.0% | |
| TGTTAACACCATACCTATCA+TGG | - | chr5_3:9886897-9886916 | Msa0797660:CDS | 35.0% | |
| ATCAAAAGTCTCACCATGAT+AGG | + | chr5_3:9886913-9886932 | None:intergenic | 35.0% | |
| AACCACTTTGAATCACAAGA+AGG | + | chr5_3:9887050-9887069 | None:intergenic | 35.0% | |
| CTTACACTTGGAAATGAAGA+TGG | + | chr5_3:9887139-9887158 | None:intergenic | 35.0% | |
| ! | TCAGCCTTCTAAAAGGGATA+TGG | - | chr5_3:9885835-9885854 | Msa0797660:CDS | 40.0% |
| GATATGGTTGTTGGGTATGA+GGG | - | chr5_3:9885851-9885870 | Msa0797660:CDS | 40.0% | |
| TGATGGTCAGATTCTAGATC+TGG | - | chr5_3:9885880-9885899 | Msa0797660:CDS | 40.0% | |
| GTTGATTGTGGTGGTATTGT+AGG | - | chr5_3:9885935-9885954 | Msa0797660:CDS | 40.0% | |
| !! | ATTGTAGGAACTGGTGTTGT+TGG | - | chr5_3:9885950-9885969 | Msa0797660:CDS | 40.0% |
| GAGAATGTTGTTCCTCTCAT+AGG | + | chr5_3:9886098-9886117 | None:intergenic | 40.0% | |
| CAAAGCTCTTGCATAGTTGT+AGG | + | chr5_3:9886151-9886170 | None:intergenic | 40.0% | |
| CTACAACTATGCAAGAGCTT+TGG | - | chr5_3:9886149-9886168 | Msa0797660:CDS | 40.0% | |
| ! | AAGTGTTGTGTTTGGAGTGA+TGG | + | chr5_3:9886182-9886201 | None:intergenic | 40.0% |
| AAGAGGTCTGAAGATGTTCA+AGG | - | chr5_3:9886250-9886269 | Msa0797660:CDS | 40.0% | |
| GAGACACTCAAGAAGGTTAA+GGG | - | chr5_3:9886292-9886311 | Msa0797660:CDS | 40.0% | |
| AGCTAGAGTTCATGCTTTGA+AGG | - | chr5_3:9886318-9886337 | Msa0797660:CDS | 40.0% | |
| CCAACAGCATGTGAAGTAAA+AGG | + | chr5_3:9886433-9886452 | None:intergenic | 40.0% | |
| ! | CCTTTTACTTCACATGCTGT+TGG | - | chr5_3:9886430-9886449 | Msa0797660:CDS | 40.0% |
| !! | GCTGTTGGTTCTGAAGTTAT+TGG | - | chr5_3:9886445-9886464 | Msa0797660:CDS | 40.0% |
| AGACTAAAATCAGTTGCACG+CGG | - | chr5_3:9886569-9886588 | Msa0797660:CDS | 40.0% | |
| ACTATGGCTGGAGATAATCT+CGG | + | chr5_3:9886632-9886651 | None:intergenic | 40.0% | |
| TCCAGCCATAGTTTATTGGT+TGG | - | chr5_3:9886640-9886659 | Msa0797660:CDS | 40.0% | |
| TCCAACCAATAAACTATGGC+TGG | + | chr5_3:9886644-9886663 | None:intergenic | 40.0% | |
| !! | TGGATTGATGAGGCTTGTTA+AGG | - | chr5_3:9886660-9886679 | Msa0797660:CDS | 40.0% |
| ! | TATAGAAGCACACTGTTCTG+AGG | + | chr5_3:9886726-9886745 | None:intergenic | 40.0% |
| CAGAACAGTGTGCTTCTATA+AGG | - | chr5_3:9886726-9886745 | Msa0797660:CDS | 40.0% | |
| TGGTATGGACCATGATTGTT+TGG | - | chr5_3:9886807-9886826 | Msa0797660:CDS | 40.0% | |
| GGGCTAATTCCAAACAATCA+TGG | + | chr5_3:9886819-9886838 | None:intergenic | 40.0% | |
| ! | GGAATTAGCCCTTTGTGTTT+TGG | - | chr5_3:9886828-9886847 | Msa0797660:CDS | 40.0% |
| TCGTTATCGTCAATACCTGA+AGG | - | chr5_3:9886853-9886872 | Msa0797660:CDS | 40.0% | |
| AAGTCTCACCATGATAGGTA+TGG | + | chr5_3:9886908-9886927 | None:intergenic | 40.0% | |
| ! | TCATGGTGAGACTTTTGATG+AGG | - | chr5_3:9886914-9886933 | Msa0797660:CDS | 40.0% |
| AATCACAAGAAGGAGCTTAG+CGG | + | chr5_3:9887040-9887059 | None:intergenic | 40.0% | |
| CTCCTTCTTGTGATTCAAAG+TGG | - | chr5_3:9887045-9887064 | Msa0797660:CDS | 40.0% | |
| ! | TCAGCCTTCTAAAAGGGATA+TGG | - | chr5_3:9885835-9885854 | Msa0797660:CDS | 40.0% |
| GATATGGTTGTTGGGTATGA+GGG | - | chr5_3:9885851-9885870 | Msa0797660:CDS | 40.0% | |
| TGATGGTCAGATTCTAGATC+TGG | - | chr5_3:9885880-9885899 | Msa0797660:CDS | 40.0% | |
| GTTGATTGTGGTGGTATTGT+AGG | - | chr5_3:9885935-9885954 | Msa0797660:CDS | 40.0% | |
| !! | ATTGTAGGAACTGGTGTTGT+TGG | - | chr5_3:9885950-9885969 | Msa0797660:CDS | 40.0% |
| GAGAATGTTGTTCCTCTCAT+AGG | + | chr5_3:9886098-9886117 | None:intergenic | 40.0% | |
| CAAAGCTCTTGCATAGTTGT+AGG | + | chr5_3:9886151-9886170 | None:intergenic | 40.0% | |
| CTACAACTATGCAAGAGCTT+TGG | - | chr5_3:9886149-9886168 | Msa0797660:CDS | 40.0% | |
| ! | AAGTGTTGTGTTTGGAGTGA+TGG | + | chr5_3:9886182-9886201 | None:intergenic | 40.0% |
| AAGAGGTCTGAAGATGTTCA+AGG | - | chr5_3:9886250-9886269 | Msa0797660:CDS | 40.0% | |
| GAGACACTCAAGAAGGTTAA+GGG | - | chr5_3:9886292-9886311 | Msa0797660:CDS | 40.0% | |
| AGCTAGAGTTCATGCTTTGA+AGG | - | chr5_3:9886318-9886337 | Msa0797660:CDS | 40.0% | |
| CCAACAGCATGTGAAGTAAA+AGG | + | chr5_3:9886433-9886452 | None:intergenic | 40.0% | |
| ! | CCTTTTACTTCACATGCTGT+TGG | - | chr5_3:9886430-9886449 | Msa0797660:CDS | 40.0% |
| !! | GCTGTTGGTTCTGAAGTTAT+TGG | - | chr5_3:9886445-9886464 | Msa0797660:CDS | 40.0% |
| AGACTAAAATCAGTTGCACG+CGG | - | chr5_3:9886569-9886588 | Msa0797660:CDS | 40.0% | |
| ACTATGGCTGGAGATAATCT+CGG | + | chr5_3:9886632-9886651 | None:intergenic | 40.0% | |
| TCCAGCCATAGTTTATTGGT+TGG | - | chr5_3:9886640-9886659 | Msa0797660:CDS | 40.0% | |
| TCCAACCAATAAACTATGGC+TGG | + | chr5_3:9886644-9886663 | None:intergenic | 40.0% | |
| !! | TGGATTGATGAGGCTTGTTA+AGG | - | chr5_3:9886660-9886679 | Msa0797660:CDS | 40.0% |
| ! | TATAGAAGCACACTGTTCTG+AGG | + | chr5_3:9886726-9886745 | None:intergenic | 40.0% |
| CAGAACAGTGTGCTTCTATA+AGG | - | chr5_3:9886726-9886745 | Msa0797660:CDS | 40.0% | |
| TGGTATGGACCATGATTGTT+TGG | - | chr5_3:9886807-9886826 | Msa0797660:CDS | 40.0% | |
| GGGCTAATTCCAAACAATCA+TGG | + | chr5_3:9886819-9886838 | None:intergenic | 40.0% | |
| ! | GGAATTAGCCCTTTGTGTTT+TGG | - | chr5_3:9886828-9886847 | Msa0797660:CDS | 40.0% |
| TCGTTATCGTCAATACCTGA+AGG | - | chr5_3:9886853-9886872 | Msa0797660:CDS | 40.0% | |
| AAGTCTCACCATGATAGGTA+TGG | + | chr5_3:9886908-9886927 | None:intergenic | 40.0% | |
| ! | TCATGGTGAGACTTTTGATG+AGG | - | chr5_3:9886914-9886933 | Msa0797660:CDS | 40.0% |
| AATCACAAGAAGGAGCTTAG+CGG | + | chr5_3:9887040-9887059 | None:intergenic | 40.0% | |
| CTCCTTCTTGTGATTCAAAG+TGG | - | chr5_3:9887045-9887064 | Msa0797660:CDS | 40.0% | |
| GGATATGGTTGTTGGGTATG+AGG | - | chr5_3:9885850-9885869 | Msa0797660:CDS | 45.0% | |
| TGGACACAGCTGTGAAAGAT+GGG | - | chr5_3:9885900-9885919 | Msa0797660:CDS | 45.0% | |
| ! | AGCTGTGAAAGATGGGGTTT+TGG | - | chr5_3:9885907-9885926 | Msa0797660:CDS | 45.0% |
| ! | GCTGTGAAAGATGGGGTTTT+GGG | - | chr5_3:9885908-9885927 | Msa0797660:CDS | 45.0% |
| !!! | GTTTTGGGTGGTGTTGATTG+TGG | - | chr5_3:9885923-9885942 | Msa0797660:CDS | 45.0% |
| TGTGGTGGTATTGTAGGAAC+TGG | - | chr5_3:9885941-9885960 | Msa0797660:CDS | 45.0% | |
| AGAGTAACAGGGTCTTGCAT+TGG | + | chr5_3:9886061-9886080 | None:intergenic | 45.0% | |
| GTCCAGTGCAAAGAGTAACA+GGG | + | chr5_3:9886072-9886091 | None:intergenic | 45.0% | |
| TGTCCAGTGCAAAGAGTAAC+AGG | + | chr5_3:9886073-9886092 | None:intergenic | 45.0% | |
| GGAGACACTCAAGAAGGTTA+AGG | - | chr5_3:9886291-9886310 | Msa0797660:CDS | 45.0% | |
| ! | GAAGGAGCTTCATCAAGTTG+TGG | - | chr5_3:9886336-9886355 | Msa0797660:CDS | 45.0% |
| GCACGTAAGTCTGTGATTGA+TGG | - | chr5_3:9886373-9886392 | Msa0797660:CDS | 45.0% | |
| CGTAAGTCTGTGATTGATGG+AGG | - | chr5_3:9886376-9886395 | Msa0797660:CDS | 45.0% | |
| AAGTCTGTGATTGATGGAGG+TGG | - | chr5_3:9886379-9886398 | Msa0797660:CDS | 45.0% | |
| CATAGCAATGGAATCTGTCC+TGG | - | chr5_3:9886691-9886710 | Msa0797660:CDS | 45.0% | |
| TATCGTCAATACCTGAAGGC+AGG | - | chr5_3:9886857-9886876 | Msa0797660:CDS | 45.0% | |
| ATCGTCAATACCTGAAGGCA+GGG | - | chr5_3:9886858-9886877 | Msa0797660:CDS | 45.0% | |
| ! | GGTTCTGGTAAGCTTACACT+TGG | + | chr5_3:9887151-9887170 | None:intergenic | 45.0% |
| GGATATGGTTGTTGGGTATG+AGG | - | chr5_3:9885850-9885869 | Msa0797660:CDS | 45.0% | |
| TGGACACAGCTGTGAAAGAT+GGG | - | chr5_3:9885900-9885919 | Msa0797660:CDS | 45.0% | |
| ! | AGCTGTGAAAGATGGGGTTT+TGG | - | chr5_3:9885907-9885926 | Msa0797660:CDS | 45.0% |
| ! | GCTGTGAAAGATGGGGTTTT+GGG | - | chr5_3:9885908-9885927 | Msa0797660:CDS | 45.0% |
| !!! | GTTTTGGGTGGTGTTGATTG+TGG | - | chr5_3:9885923-9885942 | Msa0797660:CDS | 45.0% |
| TGTGGTGGTATTGTAGGAAC+TGG | - | chr5_3:9885941-9885960 | Msa0797660:CDS | 45.0% | |
| AGAGTAACAGGGTCTTGCAT+TGG | + | chr5_3:9886061-9886080 | None:intergenic | 45.0% | |
| GTCCAGTGCAAAGAGTAACA+GGG | + | chr5_3:9886072-9886091 | None:intergenic | 45.0% | |
| TGTCCAGTGCAAAGAGTAAC+AGG | + | chr5_3:9886073-9886092 | None:intergenic | 45.0% | |
| GGAGACACTCAAGAAGGTTA+AGG | - | chr5_3:9886291-9886310 | Msa0797660:CDS | 45.0% | |
| ! | GAAGGAGCTTCATCAAGTTG+TGG | - | chr5_3:9886336-9886355 | Msa0797660:CDS | 45.0% |
| GCACGTAAGTCTGTGATTGA+TGG | - | chr5_3:9886373-9886392 | Msa0797660:CDS | 45.0% | |
| CGTAAGTCTGTGATTGATGG+AGG | - | chr5_3:9886376-9886395 | Msa0797660:CDS | 45.0% | |
| AAGTCTGTGATTGATGGAGG+TGG | - | chr5_3:9886379-9886398 | Msa0797660:CDS | 45.0% | |
| CATAGCAATGGAATCTGTCC+TGG | - | chr5_3:9886691-9886710 | Msa0797660:CDS | 45.0% | |
| TATCGTCAATACCTGAAGGC+AGG | - | chr5_3:9886857-9886876 | Msa0797660:CDS | 45.0% | |
| ATCGTCAATACCTGAAGGCA+GGG | - | chr5_3:9886858-9886877 | Msa0797660:CDS | 45.0% | |
| ! | GGTTCTGGTAAGCTTACACT+TGG | + | chr5_3:9887151-9887170 | None:intergenic | 45.0% |
| ATGGTTGTTGGGTATGAGGG+TGG | - | chr5_3:9885854-9885873 | Msa0797660:CDS | 50.0% | |
| CTGGACACAGCTGTGAAAGA+TGG | - | chr5_3:9885899-9885918 | Msa0797660:CDS | 50.0% | |
| GGACACAGCTGTGAAAGATG+GGG | - | chr5_3:9885901-9885920 | Msa0797660:CDS | 50.0% | |
| !!! | GTGAAAGATGGGGTTTTGGG+TGG | - | chr5_3:9885911-9885930 | Msa0797660:CDS | 50.0% |
| !! | TTGGGTGGTGTTGATTGTGG+TGG | - | chr5_3:9885926-9885945 | Msa0797660:CDS | 50.0% |
| GACCCTGTTACTCTTTGCAC+TGG | - | chr5_3:9886067-9886086 | Msa0797660:CDS | 50.0% | |
| GCACTGGACAAACCTATGAG+AGG | - | chr5_3:9886083-9886102 | Msa0797660:CDS | 50.0% | |
| AGGAAGAGCTTCTGAGCTTG+TGG | - | chr5_3:9886270-9886289 | Msa0797660:CDS | 50.0% | |
| GCTTGTGGAGACACTCAAGA+AGG | - | chr5_3:9886285-9886304 | Msa0797660:CDS | 50.0% | |
| !! | GTTCTGAGGAGGCTTAATCC+AGG | + | chr5_3:9886712-9886731 | None:intergenic | 50.0% |
| !! | AGAAGCACACTGTTCTGAGG+AGG | + | chr5_3:9886723-9886742 | None:intergenic | 50.0% |
| TTCAAAGCTACCCTGCCTTC+AGG | + | chr5_3:9886871-9886890 | None:intergenic | 50.0% | |
| !! | TGAAGGCAGGGTAGCTTTGA+AGG | - | chr5_3:9886870-9886889 | Msa0797660:CDS | 50.0% |
| ATGGTTGTTGGGTATGAGGG+TGG | - | chr5_3:9885854-9885873 | Msa0797660:CDS | 50.0% | |
| CTGGACACAGCTGTGAAAGA+TGG | - | chr5_3:9885899-9885918 | Msa0797660:CDS | 50.0% | |
| GGACACAGCTGTGAAAGATG+GGG | - | chr5_3:9885901-9885920 | Msa0797660:CDS | 50.0% | |
| !!! | GTGAAAGATGGGGTTTTGGG+TGG | - | chr5_3:9885911-9885930 | Msa0797660:CDS | 50.0% |
| !! | TTGGGTGGTGTTGATTGTGG+TGG | - | chr5_3:9885926-9885945 | Msa0797660:CDS | 50.0% |
| GACCCTGTTACTCTTTGCAC+TGG | - | chr5_3:9886067-9886086 | Msa0797660:CDS | 50.0% | |
| GCACTGGACAAACCTATGAG+AGG | - | chr5_3:9886083-9886102 | Msa0797660:CDS | 50.0% | |
| AGGAAGAGCTTCTGAGCTTG+TGG | - | chr5_3:9886270-9886289 | Msa0797660:CDS | 50.0% | |
| GCTTGTGGAGACACTCAAGA+AGG | - | chr5_3:9886285-9886304 | Msa0797660:CDS | 50.0% | |
| !! | GTTCTGAGGAGGCTTAATCC+AGG | + | chr5_3:9886712-9886731 | None:intergenic | 50.0% |
| !! | AGAAGCACACTGTTCTGAGG+AGG | + | chr5_3:9886723-9886742 | None:intergenic | 50.0% |
| TTCAAAGCTACCCTGCCTTC+AGG | + | chr5_3:9886871-9886890 | None:intergenic | 50.0% | |
| !! | TGAAGGCAGGGTAGCTTTGA+AGG | - | chr5_3:9886870-9886889 | Msa0797660:CDS | 50.0% |
| GTTGTTGGGTATGAGGGTGG+TGG | - | chr5_3:9885857-9885876 | Msa0797660:CDS | 55.0% | |
| GCAATCGACGAACACTCCTC+GGG | + | chr5_3:9887000-9887019 | None:intergenic | 55.0% | |
| GGCAATCGACGAACACTCCT+CGG | + | chr5_3:9887001-9887020 | None:intergenic | 55.0% | |
| ! | TCGTCGATTGCCGTTGATGC+AGG | - | chr5_3:9887009-9887028 | Msa0797660:CDS | 55.0% |
| ! | CGTCGATTGCCGTTGATGCA+GGG | - | chr5_3:9887010-9887029 | Msa0797660:CDS | 55.0% |
| GTTGTTGGGTATGAGGGTGG+TGG | - | chr5_3:9885857-9885876 | Msa0797660:CDS | 55.0% | |
| GCAATCGACGAACACTCCTC+GGG | + | chr5_3:9887000-9887019 | None:intergenic | 55.0% | |
| GGCAATCGACGAACACTCCT+CGG | + | chr5_3:9887001-9887020 | None:intergenic | 55.0% | |
| ! | TCGTCGATTGCCGTTGATGC+AGG | - | chr5_3:9887009-9887028 | Msa0797660:CDS | 55.0% |
| ! | CGTCGATTGCCGTTGATGCA+GGG | - | chr5_3:9887010-9887029 | Msa0797660:CDS | 55.0% |
| ! | GGGTATGAGGGTGGTGGTGA+TGG | - | chr5_3:9885863-9885882 | Msa0797660:CDS | 60.0% |
| TGTTTGCAAGCTCGCACCCG+AGG | - | chr5_3:9886981-9887000 | Msa0797660:CDS | 60.0% | |
| AGCGGCAAGCCCTGCATCAA+CGG | + | chr5_3:9887022-9887041 | None:intergenic | 60.0% | |
| ! | GGGTATGAGGGTGGTGGTGA+TGG | - | chr5_3:9885863-9885882 | Msa0797660:CDS | 60.0% |
| TGTTTGCAAGCTCGCACCCG+AGG | - | chr5_3:9886981-9887000 | Msa0797660:CDS | 60.0% | |
| AGCGGCAAGCCCTGCATCAA+CGG | + | chr5_3:9887022-9887041 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9885824 | 9887179 | 9885824 | ID=Msa0797660;Name=Msa0797660 |
| chr5_3 | mRNA | 9885824 | 9887179 | 9885824 | ID=Msa0797660-mRNA-1;Parent=Msa0797660;Name=Msa0797660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|451 |
| chr5_3 | exon | 9885824 | 9887179 | 9885824 | ID=Msa0797660-mRNA-1:exon:4215;Parent=Msa0797660-mRNA-1 |
| chr5_3 | CDS | 9885824 | 9887179 | 9885824 | ID=Msa0797660-mRNA-1:cds;Parent=Msa0797660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
