Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162230 | XP_003625185.1 | 98.909 | 275 | 3 | 0 | 1 | 275 | 1 | 275 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162230 | sp|Q9FL54|DNAJ6_ARATH | 64.894 | 282 | 87 | 4 | 1 | 270 | 1 | 282 | 4.78e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162230 | A2Q3D3 | 98.909 | 275 | 3 | 0 | 1 | 275 | 1 | 275 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042640 | Msa1162230 | 0.815614 | 8.449018e-52 | -8.615850e-47 |
| Msa0048510 | Msa1162230 | 0.807326 | 5.338592e-50 | -8.615850e-47 |
| Msa0065020 | Msa1162230 | 0.803764 | 2.982893e-49 | -8.615850e-47 |
| Msa0074360 | Msa1162230 | 0.805393 | 1.364120e-49 | -8.615850e-47 |
| Msa0077340 | Msa1162230 | 0.862982 | 3.445527e-64 | -8.615850e-47 |
| Msa0077560 | Msa1162230 | 0.858899 | 6.000681e-63 | -8.615850e-47 |
| Msa0094780 | Msa1162230 | 0.848379 | 6.363883e-60 | -8.615850e-47 |
| Msa0094790 | Msa1162230 | 0.803694 | 3.085285e-49 | -8.615850e-47 |
| Msa0621320 | Msa1162230 | 0.804574 | 2.023661e-49 | -8.615850e-47 |
| Msa0621710 | Msa1162230 | 0.806203 | 9.217332e-50 | -8.615850e-47 |
| Msa0624900 | Msa1162230 | 0.827052 | 1.935895e-54 | -8.615850e-47 |
| Msa0641990 | Msa1162230 | 0.809289 | 2.036293e-50 | -8.615850e-47 |
| Msa0658640 | Msa1162230 | 0.811978 | 5.341857e-51 | -8.615850e-47 |
| Msa0660370 | Msa1162230 | 0.806473 | 8.087739e-50 | -8.615850e-47 |
| Msa0674480 | Msa1162230 | 0.828504 | 8.667580e-55 | -8.615850e-47 |
| Msa0693340 | Msa1162230 | -0.814390 | 1.579062e-51 | -8.615850e-47 |
| Msa0703600 | Msa1162230 | 0.810362 | 1.197019e-50 | -8.615850e-47 |
| Msa0703950 | Msa1162230 | 0.809267 | 2.059249e-50 | -8.615850e-47 |
| Msa0709200 | Msa1162230 | 0.811114 | 8.229277e-51 | -8.615850e-47 |
| Msa0709440 | Msa1162230 | 0.868361 | 6.915762e-66 | -8.615850e-47 |
| Msa0716890 | Msa1162230 | 0.830455 | 2.908506e-55 | -8.615850e-47 |
| Msa0734250 | Msa1162230 | 0.816093 | 6.605000e-52 | -8.615850e-47 |
| Msa0735780 | Msa1162230 | 0.804693 | 1.911367e-49 | -8.615850e-47 |
| Msa0754430 | Msa1162230 | 0.840555 | 8.105688e-58 | -8.615850e-47 |
| Msa0754450 | Msa1162230 | 0.846661 | 1.887987e-59 | -8.615850e-47 |
| Msa0773630 | Msa1162230 | 0.805223 | 1.480434e-49 | -8.615850e-47 |
| Msa0780910 | Msa1162230 | 0.821889 | 3.175249e-53 | -8.615850e-47 |
| Msa0795750 | Msa1162230 | 0.811937 | 5.451739e-51 | -8.615850e-47 |
| Msa0795870 | Msa1162230 | 0.812676 | 3.761524e-51 | -8.615850e-47 |
| Msa0804000 | Msa1162230 | 0.805174 | 1.516223e-49 | -8.615850e-47 |
| Msa0815970 | Msa1162230 | 0.832570 | 8.766745e-56 | -8.615850e-47 |
| Msa0818130 | Msa1162230 | 0.807243 | 5.559098e-50 | -8.615850e-47 |
| Msa0821160 | Msa1162230 | 0.803680 | 3.105490e-49 | -8.615850e-47 |
| Msa0824450 | Msa1162230 | 0.818397 | 2.002175e-52 | -8.615850e-47 |
| Msa0833650 | Msa1162230 | 0.814745 | 1.317451e-51 | -8.615850e-47 |
| Msa0837460 | Msa1162230 | 0.801235 | 9.909018e-49 | -8.615850e-47 |
| Msa0122330 | Msa1162230 | 0.800146 | 1.652570e-48 | -8.615850e-47 |
| Msa0123070 | Msa1162230 | 0.809580 | 1.763473e-50 | -8.615850e-47 |
| Msa0124910 | Msa1162230 | 0.810339 | 1.211032e-50 | -8.615850e-47 |
| Msa0125360 | Msa1162230 | 0.855514 | 5.996196e-62 | -8.615850e-47 |
| Msa0142430 | Msa1162230 | 0.829053 | 6.384109e-55 | -8.615850e-47 |
| Msa0143670 | Msa1162230 | 0.813262 | 2.797425e-51 | -8.615850e-47 |
| Msa0172480 | Msa1162230 | 0.811370 | 7.244019e-51 | -8.615850e-47 |
| Msa0181650 | Msa1162230 | 0.805478 | 1.309470e-49 | -8.615850e-47 |
| Msa0190730 | Msa1162230 | 0.831345 | 1.759743e-55 | -8.615850e-47 |
| Msa0194630 | Msa1162230 | 0.806996 | 6.270380e-50 | -8.615850e-47 |
| Msa0204950 | Msa1162230 | 0.833576 | 4.926693e-56 | -8.615850e-47 |
| Msa0213030 | Msa1162230 | 0.800596 | 1.338159e-48 | -8.615850e-47 |
| Msa0236820 | Msa1162230 | 0.804791 | 1.823482e-49 | -8.615850e-47 |
| Msa0367150 | Msa1162230 | 0.807058 | 6.083949e-50 | -8.615850e-47 |
| Msa0373500 | Msa1162230 | 0.841790 | 3.836991e-58 | -8.615850e-47 |
| Msa0380490 | Msa1162230 | 0.845641 | 3.578610e-59 | -8.615850e-47 |
| Msa0405680 | Msa1162230 | 0.800463 | 1.424572e-48 | -8.615850e-47 |
| Msa0409830 | Msa1162230 | 0.848806 | 4.847809e-60 | -8.615850e-47 |
| Msa0414880 | Msa1162230 | 0.828503 | 8.672213e-55 | -8.615850e-47 |
| Msa0430000 | Msa1162230 | 0.829521 | 4.913634e-55 | -8.615850e-47 |
| Msa0432010 | Msa1162230 | 0.823514 | 1.329511e-53 | -8.615850e-47 |
| Msa0436330 | Msa1162230 | 0.828754 | 7.540801e-55 | -8.615850e-47 |
| Msa0454560 | Msa1162230 | 0.832210 | 1.076552e-55 | -8.615850e-47 |
| Msa0459740 | Msa1162230 | 0.831079 | 2.044950e-55 | -8.615850e-47 |
| Msa0468620 | Msa1162230 | 0.834174 | 3.491962e-56 | -8.615850e-47 |
| Msa0481890 | Msa1162230 | 0.868104 | 8.368339e-66 | -8.615850e-47 |
| Msa0980290 | Msa1162230 | 0.816337 | 5.825000e-52 | -8.615850e-47 |
| Msa1034860 | Msa1162230 | 0.907120 | 7.142862e-81 | -8.615850e-47 |
| Msa1072940 | Msa1162230 | 0.837304 | 5.624626e-57 | -8.615850e-47 |
| Msa1074900 | Msa1162230 | 0.939458 | 1.228060e-99 | -8.615850e-47 |
| Msa1084530 | Msa1162230 | 0.861905 | 7.382899e-64 | -8.615850e-47 |
| Msa0241610 | Msa1162230 | 0.806389 | 8.423933e-50 | -8.615850e-47 |
| Msa0249850 | Msa1162230 | 0.827238 | 1.746522e-54 | -8.615850e-47 |
| Msa0263230 | Msa1162230 | 0.819829 | 9.455660e-53 | -8.615850e-47 |
| Msa0269210 | Msa1162230 | 0.849319 | 3.489772e-60 | -8.615850e-47 |
| Msa0281470 | Msa1162230 | 0.845484 | 3.946765e-59 | -8.615850e-47 |
| Msa0307270 | Msa1162230 | 0.843304 | 1.521885e-58 | -8.615850e-47 |
| Msa0320600 | Msa1162230 | 0.829116 | 6.164101e-55 | -8.615850e-47 |
| Msa0338340 | Msa1162230 | 0.800215 | 1.600082e-48 | -8.615850e-47 |
| Msa0339020 | Msa1162230 | 0.801677 | 8.043631e-49 | -8.615850e-47 |
| Msa0361910 | Msa1162230 | 0.827346 | 1.645970e-54 | -8.615850e-47 |
| Msa1125820 | Msa1162230 | 0.862375 | 5.299688e-64 | -8.615850e-47 |
| Msa1125990 | Msa1162230 | 0.864533 | 1.135883e-64 | -8.615850e-47 |
| Msa1132530 | Msa1162230 | 0.808261 | 3.378336e-50 | -8.615850e-47 |
| Msa1132840 | Msa1162230 | 0.816769 | 4.662348e-52 | -8.615850e-47 |
| Msa1160920 | Msa1162230 | 0.829940 | 3.884696e-55 | -8.615850e-47 |
| Msa1162230 | Msa1165090 | 0.817475 | 3.234837e-52 | -8.615850e-47 |
| Msa1162230 | Msa1169660 | 0.824724 | 6.910306e-54 | -8.615850e-47 |
| Msa1162230 | Msa1171290 | 0.872963 | 2.122582e-67 | -8.615850e-47 |
| Msa1162230 | Msa1192570 | 0.843563 | 1.297675e-58 | -8.615850e-47 |
| Msa1162230 | Msa1194240 | 0.832788 | 7.739795e-56 | -8.615850e-47 |
| Msa1162230 | Msa1200890 | 0.810035 | 1.408236e-50 | -8.615850e-47 |
| Msa1162230 | Msa1207330 | 0.804866 | 1.758752e-49 | -8.615850e-47 |
| Msa1162230 | Msa1208950 | 0.814349 | 1.612348e-51 | -8.615850e-47 |
| Msa1162230 | Msa1211640 | 0.812834 | 3.472933e-51 | -8.615850e-47 |
| Msa1162230 | Msa1218820 | 0.816858 | 4.452418e-52 | -8.615850e-47 |
| Msa1162230 | Msa1226520 | 0.807412 | 5.120108e-50 | -8.615850e-47 |
| Msa1162230 | Msa1254240 | 0.827788 | 1.289405e-54 | -8.615850e-47 |
| Msa1162230 | Msa1258000 | 0.802367 | 5.802489e-49 | -8.615850e-47 |
| Msa1162230 | Msa1307630 | 0.808014 | 3.813308e-50 | -8.615850e-47 |
| Msa1162230 | Msa1309090 | 0.803926 | 2.760445e-49 | -8.615850e-47 |
| Msa1162230 | Msa1366150 | 0.828079 | 1.097356e-54 | -8.615850e-47 |
| Msa1162230 | Msa1368750 | 0.823555 | 1.300703e-53 | -8.615850e-47 |
| Msa1162230 | Msa1374790 | 0.818794 | 1.627525e-52 | -8.615850e-47 |
| Msa1162230 | Msa1375280 | 0.803939 | 2.744225e-49 | -8.615850e-47 |
| Msa1162230 | Msa1380120 | 0.825174 | 5.411949e-54 | -8.615850e-47 |
| Msa1162230 | Msa1384150 | 0.829427 | 5.180439e-55 | -8.615850e-47 |
| Msa1162230 | Msa1387440 | 0.835310 | 1.807525e-56 | -8.615850e-47 |
| Msa1162230 | Msa1391500 | 0.828722 | 7.677312e-55 | -8.615850e-47 |
| Msa1162230 | Msa1398810 | 0.832991 | 6.892372e-56 | -8.615850e-47 |
| Msa1162230 | Msa1401670 | 0.802590 | 5.220063e-49 | -8.615850e-47 |
| Msa1162230 | Msa1405460 | 0.848884 | 4.612328e-60 | -8.615850e-47 |
| Msa1162230 | Msa1409410 | 0.809721 | 1.644793e-50 | -8.615850e-47 |
| Msa1162230 | Msa1414170 | 0.804530 | 2.066341e-49 | -8.615850e-47 |
| Msa1162230 | Msa1427110 | 0.801883 | 7.298685e-49 | -8.615850e-47 |
| Msa1162230 | Msa1429070 | 0.844387 | 7.804854e-59 | -8.615850e-47 |
| Msa1162230 | Msa1451820 | 0.820657 | 6.107931e-53 | -8.615850e-47 |
| Msa1162230 | Msa1454010 | 0.809450 | 1.880829e-50 | -8.615850e-47 |
| Msa1162230 | Msa1464090 | 0.809498 | 1.836852e-50 | -8.615850e-47 |
| Msa1162230 | Msa1465200 | 0.826759 | 2.274371e-54 | -8.615850e-47 |
| Msa0500570 | Msa1162230 | 0.823665 | 1.225560e-53 | -8.615850e-47 |
| Msa0500650 | Msa1162230 | 0.830886 | 2.281115e-55 | -8.615850e-47 |
| Msa0502510 | Msa1162230 | 0.840592 | 7.926023e-58 | -8.615850e-47 |
| Msa0514500 | Msa1162230 | 0.834900 | 2.293441e-56 | -8.615850e-47 |
| Msa0519760 | Msa1162230 | 0.811076 | 8.389428e-51 | -8.615850e-47 |
| Msa0519810 | Msa1162230 | 0.804473 | 2.123665e-49 | -8.615850e-47 |
| Msa0519840 | Msa1162230 | 0.811907 | 5.535149e-51 | -8.615850e-47 |
| Msa0529030 | Msa1162230 | 0.844282 | 8.325445e-59 | -8.615850e-47 |
| Msa0531960 | Msa1162230 | 0.803398 | 3.553067e-49 | -8.615850e-47 |
| Msa0534720 | Msa1162230 | 0.823445 | 1.379603e-53 | -8.615850e-47 |
| Msa0567170 | Msa1162230 | 0.808118 | 3.624573e-50 | -8.615850e-47 |
| Msa0580370 | Msa1162230 | 0.814424 | 1.551480e-51 | -8.615850e-47 |
| Msa0580810 | Msa1162230 | 0.819167 | 1.339042e-52 | -8.615850e-47 |
| Msa0588920 | Msa1162230 | 0.832252 | 1.051015e-55 | -8.615850e-47 |
| Msa0850690 | Msa1162230 | 0.842239 | 2.920347e-58 | -8.615850e-47 |
| Msa0851850 | Msa1162230 | 0.806687 | 7.289168e-50 | -8.615850e-47 |
| Msa0865420 | Msa1162230 | 0.800657 | 1.300145e-48 | -8.615850e-47 |
| Msa0878280 | Msa1162230 | 0.823404 | 1.410454e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162230 | MtrunA17_Chr7g0258061 | 98.909 | 275 | 3 | 0 | 1 | 275 | 1 | 275 | 0.0 | 556 |
| Msa1162230 | MtrunA17_Chr1g0173931 | 76.426 | 263 | 61 | 1 | 10 | 271 | 26 | 288 | 9.21e-140 | 395 |
| Msa1162230 | MtrunA17_Chr3g0087741 | 56.716 | 67 | 29 | 0 | 21 | 87 | 88 | 154 | 8.10e-16 | 77.0 |
| Msa1162230 | MtrunA17_Chr7g0269841 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 3.97e-15 | 74.3 |
| Msa1162230 | MtrunA17_Chr2g0295821 | 44.898 | 98 | 47 | 4 | 24 | 119 | 106 | 198 | 1.67e-14 | 72.8 |
| Msa1162230 | MtrunA17_Chr1g0209551 | 43.750 | 96 | 47 | 3 | 24 | 112 | 18 | 113 | 2.62e-14 | 72.4 |
| Msa1162230 | MtrunA17_Chr7g0271891 | 52.308 | 65 | 27 | 2 | 24 | 84 | 18 | 82 | 3.61e-14 | 68.9 |
| Msa1162230 | MtrunA17_Chr4g0010781 | 53.731 | 67 | 31 | 0 | 21 | 87 | 85 | 151 | 4.65e-14 | 71.6 |
| Msa1162230 | MtrunA17_Chr8g0344721 | 37.273 | 110 | 59 | 3 | 16 | 119 | 4 | 109 | 8.99e-14 | 68.9 |
| Msa1162230 | MtrunA17_Chr4g0040501 | 47.692 | 65 | 33 | 1 | 24 | 87 | 6 | 70 | 1.19e-12 | 67.0 |
| Msa1162230 | MtrunA17_Chr7g0242951 | 53.125 | 64 | 29 | 1 | 24 | 87 | 29 | 91 | 1.42e-12 | 67.4 |
| Msa1162230 | MtrunA17_Chr2g0282741 | 42.105 | 76 | 40 | 2 | 24 | 98 | 6 | 78 | 2.01e-12 | 66.2 |
| Msa1162230 | MtrunA17_Chr8g0352451 | 51.562 | 64 | 31 | 0 | 24 | 87 | 74 | 137 | 2.38e-12 | 66.6 |
| Msa1162230 | MtrunA17_Chr3g0138471 | 43.077 | 65 | 36 | 1 | 24 | 87 | 6 | 70 | 2.67e-12 | 65.9 |
| Msa1162230 | MtrunA17_Chr2g0295831 | 34.783 | 115 | 64 | 3 | 24 | 136 | 112 | 217 | 3.31e-12 | 64.7 |
| Msa1162230 | MtrunA17_Chr5g0414471 | 36.111 | 108 | 62 | 2 | 12 | 112 | 15 | 122 | 3.43e-12 | 65.9 |
| Msa1162230 | MtrunA17_Chr5g0393371 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 4.70e-12 | 65.5 |
| Msa1162230 | MtrunA17_Chr1g0159491 | 42.188 | 64 | 37 | 0 | 24 | 87 | 8 | 71 | 6.00e-12 | 60.5 |
| Msa1162230 | MtrunA17_Chr2g0282761 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 6.31e-12 | 65.1 |
| Msa1162230 | MtrunA17_Chr2g0324921 | 44.595 | 74 | 37 | 2 | 24 | 96 | 6 | 76 | 7.81e-12 | 64.7 |
| Msa1162230 | MtrunA17_Chr6g0478651 | 50.000 | 66 | 28 | 2 | 24 | 87 | 70 | 132 | 1.62e-11 | 64.3 |
| Msa1162230 | MtrunA17_Chr4g0006391 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.89e-11 | 63.5 |
| Msa1162230 | MtrunA17_Chr3g0123861 | 46.875 | 64 | 33 | 1 | 24 | 87 | 84 | 146 | 6.25e-11 | 62.4 |
| Msa1162230 | MtrunA17_Chr8g0334811 | 33.133 | 166 | 91 | 6 | 1 | 158 | 1 | 154 | 6.32e-11 | 62.4 |
| Msa1162230 | MtrunA17_Chr5g0426951 | 45.455 | 66 | 36 | 0 | 20 | 85 | 81 | 146 | 7.58e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162230 | AT3G12170.1 | 73.251 | 243 | 64 | 1 | 20 | 261 | 9 | 251 | 1.05e-129 | 369 |
| Msa1162230 | AT3G12170.2 | 73.251 | 243 | 64 | 1 | 20 | 261 | 45 | 287 | 1.01e-128 | 367 |
| Msa1162230 | AT5G06910.1 | 64.894 | 282 | 87 | 4 | 1 | 270 | 1 | 282 | 4.86e-118 | 340 |
| Msa1162230 | AT5G48030.1 | 58.209 | 67 | 28 | 0 | 21 | 87 | 93 | 159 | 1.29e-15 | 76.6 |
| Msa1162230 | AT1G59980.2 | 40.625 | 96 | 50 | 2 | 24 | 112 | 25 | 120 | 5.77e-15 | 74.3 |
| Msa1162230 | AT1G59980.1 | 40.625 | 96 | 50 | 2 | 24 | 112 | 25 | 120 | 6.11e-15 | 74.7 |
| Msa1162230 | AT1G56300.1 | 47.826 | 69 | 32 | 2 | 20 | 84 | 11 | 79 | 1.41e-14 | 70.1 |
| Msa1162230 | AT1G56300.2 | 47.826 | 69 | 32 | 2 | 20 | 84 | 11 | 79 | 1.48e-14 | 68.9 |
| Msa1162230 | AT5G03160.1 | 50.685 | 73 | 35 | 1 | 20 | 91 | 368 | 440 | 2.46e-14 | 73.2 |
| Msa1162230 | AT3G14200.1 | 49.351 | 77 | 36 | 1 | 20 | 93 | 10 | 86 | 3.25e-14 | 70.9 |
| Msa1162230 | AT3G62600.1 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 4.47e-14 | 71.6 |
| Msa1162230 | AT4G39150.3 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 4.80e-14 | 71.6 |
| Msa1162230 | AT4G39150.1 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 4.80e-14 | 71.6 |
| Msa1162230 | AT4G39150.2 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 4.80e-14 | 71.6 |
| Msa1162230 | AT5G01390.3 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 2.60e-13 | 68.2 |
| Msa1162230 | AT2G21510.2 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.40e-13 | 69.3 |
| Msa1162230 | AT2G21510.4 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.40e-13 | 69.3 |
| Msa1162230 | AT2G21510.3 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.45e-13 | 68.9 |
| Msa1162230 | AT2G21510.1 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.45e-13 | 68.9 |
| Msa1162230 | AT5G01390.4 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 3.49e-13 | 67.8 |
| Msa1162230 | AT2G21510.5 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 4.16e-13 | 68.6 |
| Msa1162230 | AT1G68370.1 | 42.708 | 96 | 48 | 3 | 24 | 112 | 19 | 114 | 4.36e-13 | 68.9 |
| Msa1162230 | AT5G01390.2 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 5.06e-13 | 68.2 |
| Msa1162230 | AT5G49060.2 | 48.611 | 72 | 32 | 2 | 24 | 93 | 101 | 169 | 5.09e-13 | 68.6 |
| Msa1162230 | AT5G49060.1 | 48.611 | 72 | 32 | 2 | 24 | 93 | 101 | 169 | 5.09e-13 | 68.6 |
| Msa1162230 | AT5G01390.1 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 7.63e-13 | 68.2 |
| Msa1162230 | AT4G28480.2 | 41.975 | 81 | 43 | 2 | 24 | 103 | 6 | 83 | 1.34e-12 | 67.0 |
| Msa1162230 | AT4G28480.1 | 41.975 | 81 | 43 | 2 | 24 | 103 | 6 | 83 | 1.58e-12 | 67.0 |
| Msa1162230 | AT1G77020.1 | 51.562 | 64 | 31 | 0 | 24 | 87 | 8 | 71 | 1.90e-12 | 67.0 |
| Msa1162230 | AT1G21080.3 | 37.931 | 87 | 51 | 1 | 23 | 109 | 7 | 90 | 2.22e-12 | 67.0 |
| Msa1162230 | AT1G21080.1 | 37.931 | 87 | 51 | 1 | 23 | 109 | 7 | 90 | 2.25e-12 | 67.0 |
| Msa1162230 | AT3G08910.1 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 3.41e-12 | 65.9 |
| Msa1162230 | AT1G76700.1 | 48.438 | 64 | 33 | 0 | 24 | 87 | 8 | 71 | 4.78e-12 | 65.9 |
| Msa1162230 | AT5G16650.1 | 40.789 | 76 | 45 | 0 | 13 | 88 | 2 | 77 | 7.87e-12 | 61.6 |
| Msa1162230 | AT2G20560.1 | 36.792 | 106 | 61 | 3 | 24 | 128 | 6 | 106 | 9.67e-12 | 64.7 |
| Msa1162230 | AT5G25530.2 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.12e-11 | 64.7 |
| Msa1162230 | AT5G16650.2 | 40.789 | 76 | 45 | 0 | 13 | 88 | 2 | 77 | 2.57e-11 | 61.2 |
| Msa1162230 | AT1G80030.4 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.72e-11 | 63.9 |
| Msa1162230 | AT1G80030.2 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.85e-11 | 63.9 |
| Msa1162230 | AT1G80030.3 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.85e-11 | 63.9 |
| Msa1162230 | AT1G80030.1 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.85e-11 | 63.9 |
| Msa1162230 | AT4G39960.1 | 39.560 | 91 | 50 | 3 | 23 | 109 | 86 | 175 | 3.81e-11 | 63.5 |
| Msa1162230 | AT4G39960.2 | 39.560 | 91 | 50 | 3 | 23 | 109 | 86 | 175 | 3.81e-11 | 63.5 |
| Msa1162230 | AT3G08970.1 | 51.562 | 64 | 30 | 1 | 24 | 87 | 29 | 91 | 3.97e-11 | 63.5 |
| Msa1162230 | AT3G08970.2 | 51.562 | 64 | 30 | 1 | 24 | 87 | 29 | 91 | 3.97e-11 | 63.5 |
| Msa1162230 | AT1G59725.1 | 42.424 | 66 | 36 | 1 | 24 | 87 | 6 | 71 | 6.31e-11 | 62.4 |
| Msa1162230 | AT2G22360.1 | 48.438 | 64 | 32 | 1 | 24 | 87 | 88 | 150 | 7.49e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTGCCTTCCTCTTTAA+AGG | 0.137096 | 7_4:-52784289 | None:intergenic |
| ATACTTCCTTAGCCCATTTC+TGG | 0.179895 | 7_4:-52784243 | None:intergenic |
| TAATTCTGCAGGAGAATTAA+AGG | 0.230067 | 7_4:+52784207 | Msa1162230:intron |
| CCCGCTATAATTTACGATTC+AGG | 0.236137 | 7_4:-52781492 | None:intergenic |
| AAAGAAGGCTTATTACAAAT+TGG | 0.280754 | 7_4:+52782414 | Msa1162230:CDS |
| ACACAGAGAGATTTGTTTGA+TGG | 0.322319 | 7_4:-52781614 | None:intergenic |
| CAACAAAAGCCTACCAGAAA+TGG | 0.329929 | 7_4:+52784230 | Msa1162230:CDS |
| AATTCCTCTTCAGAGGGTTC+TGG | 0.332420 | 7_4:-52784510 | None:intergenic |
| TCATCACCAGGATTCTTATC+TGG | 0.362396 | 7_4:-52782451 | None:intergenic |
| ACTGACCTTTCCTCTCATTT+CGG | 0.368205 | 7_4:-52784437 | None:intergenic |
| TAAAGGACTTGTGGGTGGTT+TGG | 0.373974 | 7_4:-52784272 | None:intergenic |
| TTCCTCTTTAAAGGACTTGT+GGG | 0.398805 | 7_4:-52784280 | None:intergenic |
| TTTCTCTTCGTCTCCAAGAA+TGG | 0.400542 | 7_4:-52782620 | None:intergenic |
| ACTTGACTCACACCGATTCA+AGG | 0.428801 | 7_4:+52783635 | Msa1162230:CDS |
| TAACGGCGGGAAAAGAATAA+AGG | 0.432023 | 7_4:+52781463 | None:intergenic |
| CTTCCTCTTTAAAGGACTTG+TGG | 0.442578 | 7_4:-52784281 | None:intergenic |
| ATCTTCAATTTCTTCATCAT+CGG | 0.442588 | 7_4:-52781670 | None:intergenic |
| TCTTGGAGACGAAGAGAAAC+GGG | 0.460360 | 7_4:+52782624 | Msa1162230:CDS |
| GGTTCTTGGGTTGGAGAAAA+CGG | 0.460667 | 7_4:+52782375 | Msa1162230:intron |
| TTCTTGGAGACGAAGAGAAA+CGG | 0.462580 | 7_4:+52782623 | Msa1162230:CDS |
| GCGTCTCTAGTATCAAAGTA+TGG | 0.472145 | 7_4:+52784474 | Msa1162230:CDS |
| TGGCGCCGAGGAAGAAAACT+AGG | 0.485201 | 7_4:+52781643 | Msa1162230:CDS |
| AACAAAAGCCTACCAGAAAT+GGG | 0.487122 | 7_4:+52784231 | Msa1162230:CDS |
| TGCAACCAGTCTGATCATAG+AGG | 0.491181 | 7_4:-52782648 | None:intergenic |
| TTTCAAAACAATGTACAAGA+AGG | 0.494913 | 7_4:+52783300 | Msa1162230:CDS |
| TCATTTCTGCGGATCTACTC+TGG | 0.504619 | 7_4:+52784704 | Msa1162230:three_prime_UTR |
| TATGTGCAATGTAGTGTGAC+TGG | 0.506719 | 7_4:+52784737 | Msa1162230:three_prime_UTR |
| CATCAAGAATGTCCTTGAAT+CGG | 0.509603 | 7_4:-52783647 | None:intergenic |
| CTTCTTTATTTCTTGTTGAG+AGG | 0.513111 | 7_4:-52782398 | None:intergenic |
| CTCTTTAAAGGACTTGTGGG+TGG | 0.519289 | 7_4:-52784277 | None:intergenic |
| AGTACAAGGGGAATATGAAA+AGG | 0.520113 | 7_4:+52783492 | Msa1162230:CDS |
| CTTGATGAGGCTATAGCTGC+TGG | 0.521762 | 7_4:+52783663 | Msa1162230:CDS |
| CACCCACAAGTCCTTTAAAG+AGG | 0.526019 | 7_4:+52784278 | Msa1162230:CDS |
| CTCCATCCAGATAAGAATCC+TGG | 0.528887 | 7_4:+52782445 | Msa1162230:CDS |
| AGCTTCAAATTCCTCTTCAG+AGG | 0.534350 | 7_4:-52784517 | None:intergenic |
| CACCAGGATTCTTATCTGGA+TGG | 0.539771 | 7_4:-52782447 | None:intergenic |
| GGAGTTTGAAGCAAACTACC+GGG | 0.541480 | 7_4:+52783427 | Msa1162230:CDS |
| CCTGAATCGTAAATTATAGC+GGG | 0.543962 | 7_4:+52781492 | Msa1162230:five_prime_UTR |
| CACAAGTCCTTTAAAGAGGA+AGG | 0.544290 | 7_4:+52784282 | Msa1162230:CDS |
| GCTTCAAATTCCTCTTCAGA+GGG | 0.547917 | 7_4:-52784516 | None:intergenic |
| ACCTCAAAAGACTCTCTACC+AGG | 0.549839 | 7_4:+52781695 | Msa1162230:CDS |
| AGGAGTTTGAAGCAAACTAC+CGG | 0.550523 | 7_4:+52783426 | Msa1162230:CDS |
| ACATTTGATTACTACATGAA+AGG | 0.552769 | 7_4:-52784666 | None:intergenic |
| GTAATCAAATGTTAGTGTAA+TGG | 0.563971 | 7_4:+52784677 | Msa1162230:three_prime_UTR |
| TTCCTTAGCCCATTTCTGGT+AGG | 0.565926 | 7_4:-52784239 | None:intergenic |
| TCTGTTAATCAGGATCTGGC+AGG | 0.566964 | 7_4:+52783253 | Msa1162230:intron |
| GTAATGGTTGTTCATTTCTG+CGG | 0.569247 | 7_4:+52784693 | Msa1162230:three_prime_UTR |
| CTTATTACAAATTGGCATTG+CGG | 0.571383 | 7_4:+52782422 | Msa1162230:CDS |
| AGCCTACCAGAAATGGGCTA+AGG | 0.571998 | 7_4:+52784237 | Msa1162230:CDS |
| CTCTCAACAAGAAATAAAGA+AGG | 0.577556 | 7_4:+52782399 | Msa1162230:CDS |
| GGTCACTGAAGCTGATATTG+AGG | 0.586002 | 7_4:+52783406 | Msa1162230:intron |
| CGGGCCCTCTATGATCAGAC+TGG | 0.592329 | 7_4:+52782643 | Msa1162230:CDS |
| TTGTGTGAAGTGTGAGAACA+TGG | 0.609468 | 7_4:+52784635 | Msa1162230:three_prime_UTR |
| TATCACAACGCCGAAATGAG+AGG | 0.612937 | 7_4:+52784427 | Msa1162230:CDS |
| ACCTGAATCGTAAATTATAG+CGG | 0.612965 | 7_4:+52781491 | Msa1162230:five_prime_UTR |
| TATGCCAGAACCCTCTGAAG+AGG | 0.616007 | 7_4:+52784506 | Msa1162230:CDS |
| ATTCAAGGACATTCTTGATG+AGG | 0.621008 | 7_4:+52783650 | Msa1162230:CDS |
| GCAACCAGTCTGATCATAGA+GGG | 0.623423 | 7_4:-52782647 | None:intergenic |
| AGATAAGAATCCTGGTGATG+AGG | 0.625604 | 7_4:+52782453 | Msa1162230:CDS |
| CAACGCCGAAATGAGAGGAA+AGG | 0.636406 | 7_4:+52784432 | Msa1162230:CDS |
| GTTTGATGGATTTGATAGTG+CGG | 0.647066 | 7_4:-52781600 | None:intergenic |
| TCTCTAGTATCAAAGTATGG+TGG | 0.654748 | 7_4:+52784477 | Msa1162230:CDS |
| GGCGCCGAGGAAGAAAACTA+GGG | 0.675011 | 7_4:+52781644 | Msa1162230:CDS |
| GAGTTTGAAGCAAACTACCG+GGG | 0.707683 | 7_4:+52783428 | Msa1162230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTATTTGTTTGT+TGG | + | chr7_4:52782516-52782535 | Msa1162230:intron | 10.0% |
| !!! | ATTTTTAAACAAAAAGTTTG+TGG | - | chr7_4:52781523-52781542 | None:intergenic | 15.0% |
| !!! | TGGTTAAATTTATTATTTTG+CGG | + | chr7_4:52782080-52782099 | Msa1162230:intron | 15.0% |
| !!! | GTCTGTTAAATTTTATTTAA+GGG | + | chr7_4:52782812-52782831 | Msa1162230:intron | 15.0% |
| !!! | AATTTAAGAGTATTAATTGT+TGG | - | chr7_4:52784036-52784055 | None:intergenic | 15.0% |
| !! | AACAATTAATACTCTTAAAT+TGG | + | chr7_4:52784035-52784054 | Msa1162230:intron | 15.0% |
| !!! | GGTCTGTTAAATTTTATTTA+AGG | + | chr7_4:52782811-52782830 | Msa1162230:intron | 20.0% |
| !! | ATCAGAATATAGGAATATAA+TGG | + | chr7_4:52782854-52782873 | Msa1162230:intron | 20.0% |
| !!! | AAGAAAGCATTATTAATTTG+TGG | + | chr7_4:52783516-52783535 | Msa1162230:intron | 20.0% |
| !!! | TTAATTGATTTACTCTGTAA+TGG | + | chr7_4:52784341-52784360 | Msa1162230:intron | 20.0% |
| ! | ATCTTCAATTTCTTCATCAT+CGG | - | chr7_4:52781673-52781692 | None:intergenic | 25.0% |
| ! | AATACAAACTTTGTTCAACA+TGG | - | chr7_4:52781870-52781889 | None:intergenic | 25.0% |
| !!! | TTGTATTTTTGTGTGTGTTA+AGG | + | chr7_4:52781883-52781902 | Msa1162230:intron | 25.0% |
| !! | TTGATCTGTGAAATTTTCAA+TGG | + | chr7_4:52781988-52782007 | Msa1162230:intron | 25.0% |
| !! | AAATAAGCTCATTTTGTAAC+TGG | + | chr7_4:52782060-52782079 | Msa1162230:intron | 25.0% |
| !! | TTGGATCTTTTGTAATATCT+TGG | + | chr7_4:52782111-52782130 | Msa1162230:intron | 25.0% |
| !!! | TGGTTAAACCTTTTTTTCAA+TGG | + | chr7_4:52782231-52782250 | Msa1162230:intron | 25.0% |
| ! | CAAATGATCCATTGAAAAAA+AGG | - | chr7_4:52782242-52782261 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCAATGGATCATT+TGG | + | chr7_4:52782240-52782259 | Msa1162230:intron | 25.0% |
| !!! | GTCAAGAATTATTTTTGTTG+AGG | - | chr7_4:52782302-52782321 | None:intergenic | 25.0% |
| ! | AAAGAAGGCTTATTACAAAT+TGG | + | chr7_4:52782414-52782433 | Msa1162230:CDS | 25.0% |
| !!! | TATTTGTTTGTTGGCTTTTT+TGG | + | chr7_4:52782525-52782544 | Msa1162230:intron | 25.0% |
| !!! | ATTTGTTTGTTGGCTTTTTT+GGG | + | chr7_4:52782526-52782545 | Msa1162230:intron | 25.0% |
| !! | AAATAACTTTTTGCAATTGC+TGG | - | chr7_4:52782600-52782619 | None:intergenic | 25.0% |
| !! | CAAAAAGTTATTTCCATTCT+TGG | + | chr7_4:52782607-52782626 | Msa1162230:CDS | 25.0% |
| ! | ATAAAATTTAACAGACCACA+AGG | - | chr7_4:52782808-52782827 | None:intergenic | 25.0% |
| ! | ATACTACTGAATCAGAATAT+AGG | + | chr7_4:52782844-52782863 | Msa1162230:intron | 25.0% |
| ! | TATGGGCATACATATATAAT+TGG | - | chr7_4:52782975-52782994 | None:intergenic | 25.0% |
| ! | TGAGTTACTAGTATAGTAAA+TGG | + | chr7_4:52783160-52783179 | Msa1162230:intron | 25.0% |
| ! | TTTCAAAACAATGTACAAGA+AGG | + | chr7_4:52783300-52783319 | Msa1162230:CDS | 25.0% |
| ! | TTTAGTCAGATATTTGGTAT+AGG | + | chr7_4:52783720-52783739 | Msa1162230:intron | 25.0% |
| ! | AATTAGCATATTAACTCCTT+TGG | + | chr7_4:52783858-52783877 | Msa1162230:intron | 25.0% |
| ! | CTTTCTTAGAAAAATACCAA+AGG | - | chr7_4:52783877-52783896 | None:intergenic | 25.0% |
| ! | ACATCATTATCTATGTTAAC+TGG | - | chr7_4:52784004-52784023 | None:intergenic | 25.0% |
| ! | TTTGCTTAAATACCAAAATC+TGG | + | chr7_4:52784115-52784134 | Msa1162230:intron | 25.0% |
| !!! | CCATAGAAAAGCATTTATAA+TGG | - | chr7_4:52784144-52784163 | None:intergenic | 25.0% |
| !! | CCATTATAAATGCTTTTCTA+TGG | + | chr7_4:52784141-52784160 | Msa1162230:intron | 25.0% |
| ! | CATTAAACAAACAATCATCA+AGG | - | chr7_4:52784181-52784200 | None:intergenic | 25.0% |
| !! | TAATGTTTTCTTAATTCTGC+AGG | + | chr7_4:52784196-52784215 | Msa1162230:intron | 25.0% |
| ! | ATTTGACCTATAAAAAGCAA+TGG | - | chr7_4:52784376-52784395 | None:intergenic | 25.0% |
| !!! | TGATTGCTTTGATTTTTTTG+AGG | - | chr7_4:52784571-52784590 | None:intergenic | 25.0% |
| ! | ACATTTGATTACTACATGAA+AGG | - | chr7_4:52784669-52784688 | None:intergenic | 25.0% |
| ! | GTAATCAAATGTTAGTGTAA+TGG | + | chr7_4:52784677-52784696 | Msa1162230:three_prime_UTR | 25.0% |
| ACCTGAATCGTAAATTATAG+CGG | + | chr7_4:52781491-52781510 | Msa1162230:five_prime_UTR | 30.0% | |
| AAATCTCTCTGTGTGAAAAA+TGG | + | chr7_4:52781623-52781642 | Msa1162230:exon | 30.0% | |
| ! | TCTGTGAAATTTTCAATGGA+AGG | + | chr7_4:52781992-52782011 | Msa1162230:intron | 30.0% |
| !! | TTATTTTGCGGCTAATTTCT+TGG | + | chr7_4:52782092-52782111 | Msa1162230:intron | 30.0% |
| ! | CTTTTGTAATATCTTGGTCT+TGG | + | chr7_4:52782117-52782136 | Msa1162230:intron | 30.0% |
| ! | AACCAGAGAACAAAGATTTT+TGG | - | chr7_4:52782166-52782185 | None:intergenic | 30.0% |
| !! | ATAGGTTCTAGATTTGTTCT+TGG | + | chr7_4:52782211-52782230 | Msa1162230:intron | 30.0% |
| ACAAGTGGAACAAATAACAA+TGG | - | chr7_4:52782274-52782293 | None:intergenic | 30.0% | |
| ACCTAAAATGAAGTCAACAA+CGG | - | chr7_4:52782358-52782377 | None:intergenic | 30.0% | |
| !!! | TTGACTTCATTTTAGGTTCT+TGG | + | chr7_4:52782361-52782380 | Msa1162230:intron | 30.0% |
| !!! | TGACTTCATTTTAGGTTCTT+GGG | + | chr7_4:52782362-52782381 | Msa1162230:intron | 30.0% |
| ! | CTTCTTTATTTCTTGTTGAG+AGG | - | chr7_4:52782401-52782420 | None:intergenic | 30.0% |
| CTCTCAACAAGAAATAAAGA+AGG | + | chr7_4:52782399-52782418 | Msa1162230:CDS | 30.0% | |
| CTTATTACAAATTGGCATTG+CGG | + | chr7_4:52782422-52782441 | Msa1162230:CDS | 30.0% | |
| GTAATTACTTGTGTTCATAC+AGG | + | chr7_4:52782558-52782577 | Msa1162230:intron | 30.0% | |
| CTGTTCAAGATGAATTAATC+CGG | + | chr7_4:52782735-52782754 | Msa1162230:intron | 30.0% | |
| ATTAATCCGGCATAATATGT+TGG | + | chr7_4:52782748-52782767 | Msa1162230:intron | 30.0% | |
| GTAAATCCAACATATTATGC+CGG | - | chr7_4:52782757-52782776 | None:intergenic | 30.0% | |
| GATTTACAATTTGAATGCCT+AGG | + | chr7_4:52782770-52782789 | Msa1162230:intron | 30.0% | |
| ATTACAAAGTGGAAATTGAG+AGG | - | chr7_4:52782927-52782946 | None:intergenic | 30.0% | |
| GGCATACATATATAATTGGA+AGG | - | chr7_4:52782971-52782990 | None:intergenic | 30.0% | |
| CATTATCTCTTCTGTTAATC+AGG | + | chr7_4:52783243-52783262 | Msa1162230:intron | 30.0% | |
| !!! | GCATTAGTCATTTTTGTAAG+AGG | + | chr7_4:52783542-52783561 | Msa1162230:intron | 30.0% |
| TATCTGACTAAAACCTTGTT+CGG | - | chr7_4:52783712-52783731 | None:intergenic | 30.0% | |
| !! | CAAGGTTTTAGTCAGATATT+TGG | + | chr7_4:52783714-52783733 | Msa1162230:intron | 30.0% |
| CTAAAAGCAAATTAACTGCA+AGG | - | chr7_4:52783826-52783845 | None:intergenic | 30.0% | |
| !!! | CTTGCAGTTAATTTGCTTTT+AGG | + | chr7_4:52783824-52783843 | Msa1162230:intron | 30.0% |
| !! | TTTACTTGGTCTTGATGATT+TGG | - | chr7_4:52783905-52783924 | None:intergenic | 30.0% |
| !!! | CGAGTATTGTGAGTATTTTT+TGG | - | chr7_4:52783962-52783981 | None:intergenic | 30.0% |
| GGTCTATGTTTCTTATAACT+AGG | + | chr7_4:52784056-52784075 | Msa1162230:intron | 30.0% | |
| !!! | TTATAATGGACTCCAGATTT+TGG | - | chr7_4:52784130-52784149 | None:intergenic | 30.0% |
| TAATTCTGCAGGAGAATTAA+AGG | + | chr7_4:52784207-52784226 | Msa1162230:intron | 30.0% | |
| TTAATAGAACAAGCAAAACC+CGG | - | chr7_4:52784325-52784344 | None:intergenic | 30.0% | |
| !!! | ACTGATCCATTGCTTTTTAT+AGG | + | chr7_4:52784367-52784386 | Msa1162230:intron | 30.0% |
| CCTGAATCGTAAATTATAGC+GGG | + | chr7_4:52781492-52781511 | Msa1162230:five_prime_UTR | 35.0% | |
| !! | GTTTGATGGATTTGATAGTG+CGG | - | chr7_4:52781603-52781622 | None:intergenic | 35.0% |
| ! | ACACAGAGAGATTTGTTTGA+TGG | - | chr7_4:52781617-52781636 | None:intergenic | 35.0% |
| AGCGAAATGAAAATTTGCAG+AGG | - | chr7_4:52781749-52781768 | None:intergenic | 35.0% | |
| !!! | TCTTGGTCTTGGATCTTTTT+TGG | + | chr7_4:52782128-52782147 | Msa1162230:intron | 35.0% |
| !!! | CTTGGTCTTGGATCTTTTTT+GGG | + | chr7_4:52782129-52782148 | Msa1162230:intron | 35.0% |
| !! | AAAGATTTTTGGACGCAGTT+TGG | - | chr7_4:52782155-52782174 | None:intergenic | 35.0% |
| GTCCAAAAATCTTTGTTCTC+TGG | + | chr7_4:52782161-52782180 | Msa1162230:intron | 35.0% | |
| ! | TGTTCTCTGGTTTGATTGTT+TGG | + | chr7_4:52782174-52782193 | Msa1162230:intron | 35.0% |
| TTAGCATGTGTTTAGATGCA+CGG | - | chr7_4:52782333-52782352 | None:intergenic | 35.0% | |
| !!! | TCCGTTGTTGACTTCATTTT+AGG | + | chr7_4:52782354-52782373 | Msa1162230:intron | 35.0% |
| !!! | TTCATTTTAGGTTCTTGGGT+TGG | + | chr7_4:52782366-52782385 | Msa1162230:intron | 35.0% |
| TAAAAAATCACCTCATCACC+AGG | - | chr7_4:52782466-52782485 | None:intergenic | 35.0% | |
| !!! | GGTGATGAGGTGATTTTTTA+AGG | + | chr7_4:52782466-52782485 | Msa1162230:intron | 35.0% |
| ATTACTTGTGTTCATACAGG+AGG | + | chr7_4:52782561-52782580 | Msa1162230:intron | 35.0% | |
| CAGAATCTCAGATTACAAAG+TGG | - | chr7_4:52782938-52782957 | None:intergenic | 35.0% | |
| TGTTAAGCGAGACAGAATAT+GGG | - | chr7_4:52782992-52783011 | None:intergenic | 35.0% | |
| ATGTTAAGCGAGACAGAATA+TGG | - | chr7_4:52782993-52783012 | None:intergenic | 35.0% | |
| GCTTAACATGTTCATTCAGA+CGG | + | chr7_4:52783004-52783023 | Msa1162230:intron | 35.0% | |
| CTTAACATGTTCATTCAGAC+GGG | + | chr7_4:52783005-52783024 | Msa1162230:intron | 35.0% | |
| ! | ATGGCCAACAATTAGCATTT+TGG | + | chr7_4:52783179-52783198 | Msa1162230:intron | 35.0% |
| GTGTCCAAAATGCTAATTGT+TGG | - | chr7_4:52783186-52783205 | None:intergenic | 35.0% | |
| !! | GTTGTTTTGTAATGAACCAC+AGG | + | chr7_4:52783385-52783404 | Msa1162230:intron | 35.0% |
| ! | TGAGCTGTACAAAAAGTACA+AGG | + | chr7_4:52783478-52783497 | Msa1162230:CDS | 35.0% |
| ! | GAGCTGTACAAAAAGTACAA+GGG | + | chr7_4:52783479-52783498 | Msa1162230:CDS | 35.0% |
| ! | AGCTGTACAAAAAGTACAAG+GGG | + | chr7_4:52783480-52783499 | Msa1162230:CDS | 35.0% |
| AGTACAAGGGGAATATGAAA+AGG | + | chr7_4:52783492-52783511 | Msa1162230:CDS | 35.0% | |
| CATCAAGAATGTCCTTGAAT+CGG | - | chr7_4:52783650-52783669 | None:intergenic | 35.0% | |
| ATTCAAGGACATTCTTGATG+AGG | + | chr7_4:52783650-52783669 | Msa1162230:CDS | 35.0% | |
| ! | TAACTAGATTTTGCCGAACA+AGG | + | chr7_4:52783696-52783715 | Msa1162230:intron | 35.0% |
| ATAGGTCTTAGTTTCTACAC+AGG | + | chr7_4:52783738-52783757 | Msa1162230:intron | 35.0% | |
| AAAAGCAAGTCAGTAGATAG+TGG | + | chr7_4:52783796-52783815 | Msa1162230:intron | 35.0% | |
| AAAGCAAGTCAGTAGATAGT+GGG | + | chr7_4:52783797-52783816 | Msa1162230:intron | 35.0% | |
| !! | GACCAAGTAAAAGCATTTGA+AGG | + | chr7_4:52783914-52783933 | Msa1162230:intron | 35.0% |
| ! | CTCCTTCAAATGCTTTTACT+TGG | - | chr7_4:52783919-52783938 | None:intergenic | 35.0% |
| AACAAAAGCCTACCAGAAAT+GGG | + | chr7_4:52784231-52784250 | Msa1162230:CDS | 35.0% | |
| ! | TTCCTCTTTAAAGGACTTGT+GGG | - | chr7_4:52784283-52784302 | None:intergenic | 35.0% |
| TACTTTGCCTTCCTCTTTAA+AGG | - | chr7_4:52784292-52784311 | None:intergenic | 35.0% | |
| TCTCTAGTATCAAAGTATGG+TGG | + | chr7_4:52784477-52784496 | Msa1162230:CDS | 35.0% | |
| TGCACAGAAAAAGTTGGAAA+AGG | + | chr7_4:52784539-52784558 | Msa1162230:CDS | 35.0% | |
| GCACAGAAAAAGTTGGAAAA+GGG | + | chr7_4:52784540-52784559 | Msa1162230:CDS | 35.0% | |
| GTAATGGTTGTTCATTTCTG+CGG | + | chr7_4:52784693-52784712 | Msa1162230:three_prime_UTR | 35.0% | |
| CCCGCTATAATTTACGATTC+AGG | - | chr7_4:52781495-52781514 | None:intergenic | 40.0% | |
| !! | GAAACCCTAGTTTTCTTCCT+CGG | - | chr7_4:52781651-52781670 | None:intergenic | 40.0% |
| TCAATGGAAGGCTAGAGTAT+TGG | + | chr7_4:52782004-52782023 | Msa1162230:intron | 40.0% | |
| ! | CAATGGAAGGCTAGAGTATT+GGG | + | chr7_4:52782005-52782024 | Msa1162230:intron | 40.0% |
| TTGGAATTGCACTTGCACAT+AGG | + | chr7_4:52782193-52782212 | Msa1162230:intron | 40.0% | |
| TTTGTTGAGGAGTCAACAAG+TGG | - | chr7_4:52782289-52782308 | None:intergenic | 40.0% | |
| TCATCACCAGGATTCTTATC+TGG | - | chr7_4:52782454-52782473 | None:intergenic | 40.0% | |
| ! | AGATAAGAATCCTGGTGATG+AGG | + | chr7_4:52782453-52782472 | Msa1162230:CDS | 40.0% |
| !!! | GTTTGTTGGCTTTTTTGGGT+TGG | + | chr7_4:52782530-52782549 | Msa1162230:intron | 40.0% |
| TTTCTCTTCGTCTCCAAGAA+TGG | - | chr7_4:52782623-52782642 | None:intergenic | 40.0% | |
| TTCTTGGAGACGAAGAGAAA+CGG | + | chr7_4:52782623-52782642 | Msa1162230:CDS | 40.0% | |
| !! | TGCATTGATGATGATGTGAG+TGG | + | chr7_4:52782667-52782686 | Msa1162230:intron | 40.0% |
| !! | CAAGGACTTGCTAAAAACCT+AGG | - | chr7_4:52782790-52782809 | None:intergenic | 40.0% |
| !!! | AGGTTTTTAGCAAGTCCTTG+TGG | + | chr7_4:52782790-52782809 | Msa1162230:intron | 40.0% |
| CTCTTCTGTTAATCAGGATC+TGG | + | chr7_4:52783249-52783268 | Msa1162230:intron | 40.0% | |
| TACCACAATGCATCAGGAAA+GGG | - | chr7_4:52783348-52783367 | None:intergenic | 40.0% | |
| ATACCACAATGCATCAGGAA+AGG | - | chr7_4:52783349-52783368 | None:intergenic | 40.0% | |
| CATGTATACCACAATGCATC+AGG | - | chr7_4:52783354-52783373 | None:intergenic | 40.0% | |
| ! | AGGAGTTTGAAGCAAACTAC+CGG | + | chr7_4:52783426-52783445 | Msa1162230:CDS | 40.0% |
| CAACAAAAGCCTACCAGAAA+TGG | + | chr7_4:52784230-52784249 | Msa1162230:CDS | 40.0% | |
| ATACTTCCTTAGCCCATTTC+TGG | - | chr7_4:52784246-52784265 | None:intergenic | 40.0% | |
| ! | CTTCCTCTTTAAAGGACTTG+TGG | - | chr7_4:52784284-52784303 | None:intergenic | 40.0% |
| ! | CACAAGTCCTTTAAAGAGGA+AGG | + | chr7_4:52784282-52784301 | Msa1162230:CDS | 40.0% |
| !! | GGCAAAGTAAGTTGATCAAC+CGG | + | chr7_4:52784303-52784322 | Msa1162230:intron | 40.0% |
| !! | GCAAAGTAAGTTGATCAACC+GGG | + | chr7_4:52784304-52784323 | Msa1162230:intron | 40.0% |
| ACTGACCTTTCCTCTCATTT+CGG | - | chr7_4:52784440-52784459 | None:intergenic | 40.0% | |
| GCGTCTCTAGTATCAAAGTA+TGG | + | chr7_4:52784474-52784493 | Msa1162230:CDS | 40.0% | |
| GCTTCAAATTCCTCTTCAGA+GGG | - | chr7_4:52784519-52784538 | None:intergenic | 40.0% | |
| AGCTTCAAATTCCTCTTCAG+AGG | - | chr7_4:52784520-52784539 | None:intergenic | 40.0% | |
| TGAAGCTGCACAGAAAAAGT+TGG | + | chr7_4:52784533-52784552 | Msa1162230:CDS | 40.0% | |
| TTGTGTGAAGTGTGAGAACA+TGG | + | chr7_4:52784635-52784654 | Msa1162230:three_prime_UTR | 40.0% | |
| TATGTGCAATGTAGTGTGAC+TGG | + | chr7_4:52784737-52784756 | Msa1162230:three_prime_UTR | 40.0% | |
| ACCTCAAAAGACTCTCTACC+AGG | + | chr7_4:52781695-52781714 | Msa1162230:CDS | 45.0% | |
| ! | ACCTGGTAGAGAGTCTTTTG+AGG | - | chr7_4:52781699-52781718 | None:intergenic | 45.0% |
| AAGCGTGAATTTGCGATACC+TGG | - | chr7_4:52781716-52781735 | None:intergenic | 45.0% | |
| !! | GGTTCTTGGGTTGGAGAAAA+CGG | + | chr7_4:52782375-52782394 | Msa1162230:intron | 45.0% |
| CTCCATCCAGATAAGAATCC+TGG | + | chr7_4:52782445-52782464 | Msa1162230:CDS | 45.0% | |
| CACCAGGATTCTTATCTGGA+TGG | - | chr7_4:52782450-52782469 | None:intergenic | 45.0% | |
| !! | TAAGGCTGCTTGTTATGCTG+TGG | + | chr7_4:52782484-52782503 | Msa1162230:intron | 45.0% |
| TCTTGGAGACGAAGAGAAAC+GGG | + | chr7_4:52782624-52782643 | Msa1162230:CDS | 45.0% | |
| GCAACCAGTCTGATCATAGA+GGG | - | chr7_4:52782650-52782669 | None:intergenic | 45.0% | |
| TGCAACCAGTCTGATCATAG+AGG | - | chr7_4:52782651-52782670 | None:intergenic | 45.0% | |
| !! | GATGATGTGAGTGGTGTTGT+TGG | + | chr7_4:52782676-52782695 | Msa1162230:intron | 45.0% |
| AGCCTTGGTCTCTCAATCTA+GGG | - | chr7_4:52782901-52782920 | None:intergenic | 45.0% | |
| GAAATTGAGAGGAAGAGCCT+TGG | - | chr7_4:52782916-52782935 | None:intergenic | 45.0% | |
| TCTGTTAATCAGGATCTGGC+AGG | + | chr7_4:52783253-52783272 | Msa1162230:intron | 45.0% | |
| ACCACAATGCATCAGGAAAG+GGG | - | chr7_4:52783347-52783366 | None:intergenic | 45.0% | |
| ATATCAGCTTCAGTGACCTG+TGG | - | chr7_4:52783404-52783423 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | + | chr7_4:52783406-52783425 | Msa1162230:intron | 45.0% | |
| ! | GGAGTTTGAAGCAAACTACC+GGG | + | chr7_4:52783427-52783446 | Msa1162230:CDS | 45.0% |
| ! | GAGTTTGAAGCAAACTACCG+GGG | + | chr7_4:52783428-52783447 | Msa1162230:CDS | 45.0% |
| ! | TTTTCTCTGAGTCAGAACCC+CGG | - | chr7_4:52783448-52783467 | None:intergenic | 45.0% |
| !! | ACTTGACTCACACCGATTCA+AGG | + | chr7_4:52783635-52783654 | Msa1162230:CDS | 45.0% |
| !! | TTCCTTAGCCCATTTCTGGT+AGG | - | chr7_4:52784242-52784261 | None:intergenic | 45.0% |
| TAAAGGACTTGTGGGTGGTT+TGG | - | chr7_4:52784275-52784294 | None:intergenic | 45.0% | |
| ! | CTCTTTAAAGGACTTGTGGG+TGG | - | chr7_4:52784280-52784299 | None:intergenic | 45.0% |
| ! | CACCCACAAGTCCTTTAAAG+AGG | + | chr7_4:52784278-52784297 | Msa1162230:CDS | 45.0% |
| TATCACAACGCCGAAATGAG+AGG | + | chr7_4:52784427-52784446 | Msa1162230:CDS | 45.0% | |
| AATTCCTCTTCAGAGGGTTC+TGG | - | chr7_4:52784513-52784532 | None:intergenic | 45.0% | |
| TCATTTCTGCGGATCTACTC+TGG | + | chr7_4:52784704-52784723 | Msa1162230:three_prime_UTR | 45.0% | |
| GCCTTGGTCTCTCAATCTAG+GGG | - | chr7_4:52782900-52782919 | None:intergenic | 50.0% | |
| GAGCCTTGGTCTCTCAATCT+AGG | - | chr7_4:52782902-52782921 | None:intergenic | 50.0% | |
| TCCCCTTTCCTGATGCATTG+TGG | + | chr7_4:52783343-52783362 | Msa1162230:intron | 50.0% | |
| CTTGATGAGGCTATAGCTGC+TGG | + | chr7_4:52783663-52783682 | Msa1162230:CDS | 50.0% | |
| TGAGGCTATAGCTGCTGGTA+AGG | + | chr7_4:52783668-52783687 | Msa1162230:intron | 50.0% | |
| GAGGCTATAGCTGCTGGTAA+GGG | + | chr7_4:52783669-52783688 | Msa1162230:intron | 50.0% | |
| !! | AGCCTACCAGAAATGGGCTA+AGG | + | chr7_4:52784237-52784256 | Msa1162230:CDS | 50.0% |
| CAACGCCGAAATGAGAGGAA+AGG | + | chr7_4:52784432-52784451 | Msa1162230:CDS | 50.0% | |
| ! | TATGCCAGAACCCTCTGAAG+AGG | + | chr7_4:52784506-52784525 | Msa1162230:CDS | 50.0% |
| CTGTGTGAAAAATGGCGCCG+AGG | + | chr7_4:52781631-52781650 | Msa1162230:exon | 55.0% | |
| ! | TGGCGCCGAGGAAGAAAACT+AGG | + | chr7_4:52781643-52781662 | Msa1162230:CDS | 55.0% |
| ! | GGCGCCGAGGAAGAAAACTA+GGG | + | chr7_4:52781644-52781663 | Msa1162230:CDS | 55.0% |
| GCCCCTAGATTGAGAGACCA+AGG | + | chr7_4:52782896-52782915 | Msa1162230:intron | 55.0% | |
| CGGGCCCTCTATGATCAGAC+TGG | + | chr7_4:52782643-52782662 | Msa1162230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 52781472 | 52784851 | 52781472 | ID=Msa1162230;Name=Msa1162230 |
| chr7_4 | mRNA | 52781472 | 52784851 | 52781472 | ID=Msa1162230-mRNA-1;Parent=Msa1162230;Name=Msa1162230-mRNA-1;_AED=0.10;_eAED=0.10;_QI=170|1|1|1|1|1|8|249|275 |
| chr7_4 | exon | 52781472 | 52781716 | 52781472 | ID=Msa1162230-mRNA-1:exon:15197;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52782376 | 52782474 | 52782376 | ID=Msa1162230-mRNA-1:exon:15198;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52782580 | 52782681 | 52782580 | ID=Msa1162230-mRNA-1:exon:15199;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52783265 | 52783321 | 52783265 | ID=Msa1162230-mRNA-1:exon:15200;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52783407 | 52783513 | 52783407 | ID=Msa1162230-mRNA-1:exon:15201;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52783602 | 52783684 | 52783602 | ID=Msa1162230-mRNA-1:exon:15202;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52784218 | 52784308 | 52784218 | ID=Msa1162230-mRNA-1:exon:15203;Parent=Msa1162230-mRNA-1 |
| chr7_4 | exon | 52784389 | 52784851 | 52784389 | ID=Msa1162230-mRNA-1:exon:15204;Parent=Msa1162230-mRNA-1 |
| chr7_4 | five_prime_UTR | 52781472 | 52781641 | 52781472 | ID=Msa1162230-mRNA-1:five_prime_utr;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52781642 | 52781716 | 52781642 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52782376 | 52782474 | 52782376 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52782580 | 52782681 | 52782580 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52783265 | 52783321 | 52783265 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52783407 | 52783513 | 52783407 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52783602 | 52783684 | 52783602 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52784218 | 52784308 | 52784218 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | CDS | 52784389 | 52784602 | 52784389 | ID=Msa1162230-mRNA-1:cds;Parent=Msa1162230-mRNA-1 |
| chr7_4 | three_prime_UTR | 52784603 | 52784851 | 52784603 | ID=Msa1162230-mRNA-1:three_prime_utr;Parent=Msa1162230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
