Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000293.t1 | XP_003598266.2 | 94.5 | 271 | 15 | 0 | 1 | 271 | 17 | 287 | 4.40E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000293.t1 | Q8N5I4 | 31.9 | 207 | 122 | 5 | 61 | 262 | 38 | 230 | 3.3e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000293.t1 | G7J0B2 | 94.5 | 271 | 15 | 0 | 1 | 271 | 17 | 287 | 3.2e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000293 | MS.gene49118 | PPI |
| MS.gene49120 | MS.gene000293 | PPI |
| MS.gene34138 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene061154 | PPI |
| MS.gene000293 | MS.gene57782 | PPI |
| MS.gene058995 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene006262 | PPI |
| MS.gene05158 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene035607 | PPI |
| MS.gene000293 | MS.gene061158 | PPI |
| MS.gene34140 | MS.gene000293 | PPI |
| MS.gene048973 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene012538 | PPI |
| MS.gene000293 | MS.gene49121 | PPI |
| MS.gene006263 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene061893 | PPI |
| MS.gene34137 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene06120 | PPI |
| MS.gene34141 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene49117 | PPI |
| MS.gene000293 | MS.gene40431 | PPI |
| MS.gene42492 | MS.gene000293 | PPI |
| MS.gene061155 | MS.gene000293 | PPI |
| MS.gene000293 | MS.gene006264 | PPI |
| MS.gene000293 | MS.gene061157 | PPI |
| MS.gene000293 | MS.gene95938 | PPI |
| MS.gene000293 | MS.gene20199 | PPI |
| MS.gene000293 | MS.gene55839 | PPI |
| MS.gene000293 | MS.gene24053 | PPI |
| MS.gene000293 | MS.gene006265 | PPI |
| MS.gene037994 | MS.gene000293 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000293.t1 | MTR_3g009190 | 93.773 | 273 | 17 | 0 | 1 | 273 | 17 | 289 | 0.0 | 518 |
| MS.gene000293.t1 | MTR_3g009190 | 94.444 | 270 | 15 | 0 | 4 | 273 | 2 | 271 | 0.0 | 517 |
| MS.gene000293.t1 | MTR_6g453040 | 94.382 | 267 | 15 | 0 | 4 | 270 | 2 | 268 | 0.0 | 512 |
| MS.gene000293.t1 | MTR_6g453040 | 92.771 | 249 | 18 | 0 | 25 | 273 | 1 | 249 | 1.74e-169 | 472 |
| MS.gene000293.t1 | MTR_6g453040 | 91.935 | 248 | 20 | 0 | 4 | 251 | 2 | 249 | 4.43e-166 | 460 |
| MS.gene000293.t1 | MTR_3g091070 | 86.345 | 249 | 16 | 1 | 25 | 273 | 1 | 231 | 5.72e-154 | 432 |
| MS.gene000293.t1 | MTR_3g009190 | 92.308 | 208 | 16 | 0 | 66 | 273 | 63 | 270 | 1.66e-134 | 384 |
| MS.gene000293.t1 | MTR_3g009200 | 84.524 | 168 | 17 | 2 | 104 | 271 | 2 | 160 | 5.48e-98 | 285 |
| MS.gene000293.t1 | MTR_6g453030 | 89.610 | 77 | 8 | 0 | 94 | 170 | 1 | 77 | 7.80e-44 | 144 |
| MS.gene000293.t1 | MTR_3g077410 | 33.333 | 204 | 121 | 6 | 59 | 258 | 32 | 224 | 1.01e-19 | 87.4 |
| MS.gene000293.t1 | MTR_8g099995 | 31.156 | 199 | 124 | 3 | 67 | 261 | 38 | 227 | 4.82e-19 | 85.5 |
| MS.gene000293.t1 | MTR_6g041980 | 26.749 | 243 | 159 | 8 | 15 | 247 | 14 | 247 | 5.25e-19 | 84.3 |
| MS.gene000293.t1 | MTR_4g105310 | 31.188 | 202 | 124 | 4 | 61 | 258 | 45 | 235 | 7.40e-19 | 84.0 |
| MS.gene000293.t1 | MTR_4g105310 | 31.188 | 202 | 124 | 4 | 61 | 258 | 45 | 235 | 2.16e-18 | 84.0 |
| MS.gene000293.t1 | MTR_6g041980 | 29.146 | 199 | 126 | 6 | 15 | 207 | 14 | 203 | 6.85e-18 | 82.4 |
| MS.gene000293.t1 | MTR_7g099850 | 29.500 | 200 | 127 | 4 | 67 | 262 | 37 | 226 | 1.87e-17 | 80.9 |
| MS.gene000293.t1 | MTR_1g068970 | 30.000 | 200 | 125 | 5 | 67 | 262 | 37 | 225 | 9.08e-16 | 76.3 |
| MS.gene000293.t1 | MTR_1g100305 | 32.039 | 206 | 113 | 7 | 67 | 262 | 32 | 220 | 1.69e-15 | 75.5 |
| MS.gene000293.t1 | MTR_8g098415 | 32.512 | 203 | 116 | 5 | 67 | 262 | 32 | 220 | 3.62e-15 | 74.3 |
| MS.gene000293.t1 | MTR_8g098415 | 32.500 | 200 | 120 | 4 | 67 | 262 | 32 | 220 | 3.90e-15 | 74.3 |
| MS.gene000293.t1 | MTR_8g098415 | 32.143 | 196 | 118 | 4 | 67 | 258 | 32 | 216 | 5.04e-15 | 72.8 |
| MS.gene000293.t1 | MTR_1g100395 | 30.500 | 200 | 124 | 4 | 67 | 262 | 32 | 220 | 2.48e-14 | 72.0 |
| MS.gene000293.t1 | MTR_1g100315 | 29.500 | 200 | 126 | 4 | 67 | 262 | 32 | 220 | 2.68e-14 | 72.0 |
| MS.gene000293.t1 | MTR_6g053550 | 30.144 | 209 | 115 | 7 | 66 | 262 | 39 | 228 | 1.93e-13 | 69.7 |
| MS.gene000293.t1 | MTR_1g100335 | 30.000 | 200 | 125 | 4 | 67 | 262 | 32 | 220 | 2.31e-13 | 68.6 |
| MS.gene000293.t1 | MTR_1g100335 | 30.000 | 200 | 125 | 4 | 67 | 262 | 32 | 220 | 3.05e-13 | 68.6 |
| MS.gene000293.t1 | MTR_1g100335 | 30.000 | 200 | 125 | 4 | 67 | 262 | 32 | 220 | 5.57e-13 | 68.2 |
| MS.gene000293.t1 | MTR_6g053600 | 30.288 | 208 | 114 | 7 | 67 | 262 | 26 | 214 | 1.32e-12 | 67.0 |
| MS.gene000293.t1 | MTR_2g079710 | 29.577 | 213 | 124 | 6 | 64 | 257 | 86 | 291 | 3.28e-12 | 66.2 |
| MS.gene000293.t1 | MTR_3g098470 | 27.632 | 152 | 101 | 4 | 61 | 211 | 31 | 174 | 2.11e-11 | 63.5 |
| MS.gene000293.t1 | MTR_6g081020 | 28.879 | 232 | 140 | 9 | 38 | 258 | 34 | 251 | 5.51e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000293.t1 | AT5G04070 | 56.654 | 263 | 114 | 0 | 7 | 269 | 1 | 263 | 1.60e-94 | 283 |
| MS.gene000293.t1 | AT5G15940 | 53.585 | 265 | 122 | 1 | 6 | 269 | 1 | 265 | 8.76e-89 | 266 |
| MS.gene000293.t1 | AT5G15940 | 53.585 | 265 | 122 | 1 | 6 | 269 | 1 | 265 | 7.08e-88 | 266 |
| MS.gene000293.t1 | AT5G15940 | 53.585 | 265 | 122 | 1 | 6 | 269 | 1 | 265 | 7.08e-88 | 266 |
| MS.gene000293.t1 | AT5G15940 | 53.788 | 264 | 121 | 1 | 7 | 269 | 1 | 264 | 1.45e-87 | 265 |
| MS.gene000293.t1 | AT2G37540 | 33.500 | 200 | 118 | 5 | 67 | 262 | 36 | 224 | 1.85e-21 | 91.3 |
| MS.gene000293.t1 | AT2G37540 | 33.500 | 200 | 118 | 5 | 67 | 262 | 36 | 224 | 6.13e-21 | 90.9 |
| MS.gene000293.t1 | AT4G23430 | 34.500 | 200 | 116 | 4 | 67 | 262 | 32 | 220 | 1.53e-20 | 89.7 |
| MS.gene000293.t1 | AT4G09750 | 32.370 | 173 | 99 | 5 | 67 | 234 | 46 | 205 | 2.91e-20 | 89.0 |
| MS.gene000293.t1 | AT4G23430 | 34.000 | 200 | 115 | 4 | 67 | 262 | 32 | 218 | 1.39e-19 | 87.0 |
| MS.gene000293.t1 | AT4G23420 | 31.863 | 204 | 116 | 6 | 67 | 262 | 32 | 220 | 2.26e-19 | 85.5 |
| MS.gene000293.t1 | AT4G23420 | 31.863 | 204 | 116 | 6 | 67 | 262 | 32 | 220 | 3.47e-19 | 85.1 |
| MS.gene000293.t1 | AT4G23420 | 31.863 | 204 | 116 | 6 | 67 | 262 | 49 | 237 | 4.65e-19 | 85.9 |
| MS.gene000293.t1 | AT4G23420 | 31.863 | 204 | 116 | 6 | 67 | 262 | 32 | 220 | 6.87e-19 | 85.1 |
| MS.gene000293.t1 | AT4G23420 | 31.863 | 204 | 116 | 6 | 67 | 262 | 32 | 220 | 6.87e-19 | 85.1 |
| MS.gene000293.t1 | AT4G24050 | 30.882 | 204 | 124 | 5 | 67 | 264 | 37 | 229 | 1.22e-17 | 80.9 |
| MS.gene000293.t1 | AT1G64590 | 32.663 | 199 | 119 | 4 | 68 | 261 | 38 | 226 | 2.67e-17 | 80.9 |
| MS.gene000293.t1 | AT4G24050 | 31.188 | 202 | 122 | 5 | 67 | 262 | 37 | 227 | 3.99e-17 | 80.1 |
| MS.gene000293.t1 | AT5G50130 | 30.102 | 196 | 123 | 4 | 67 | 258 | 39 | 224 | 4.43e-17 | 79.0 |
| MS.gene000293.t1 | AT5G50130 | 30.102 | 196 | 123 | 4 | 67 | 258 | 39 | 224 | 5.38e-17 | 79.7 |
| MS.gene000293.t1 | AT5G50130 | 29.949 | 197 | 121 | 5 | 67 | 258 | 39 | 223 | 7.95e-17 | 78.6 |
| MS.gene000293.t1 | AT5G50130 | 29.949 | 197 | 121 | 5 | 67 | 258 | 39 | 223 | 1.08e-16 | 79.0 |
| MS.gene000293.t1 | AT5G50130 | 30.256 | 195 | 122 | 4 | 68 | 258 | 40 | 224 | 1.16e-16 | 79.0 |
| MS.gene000293.t1 | AT5G50130 | 29.897 | 194 | 122 | 4 | 69 | 258 | 8 | 191 | 2.43e-16 | 77.4 |
| MS.gene000293.t1 | AT5G50130 | 29.897 | 194 | 122 | 4 | 69 | 258 | 8 | 191 | 4.06e-16 | 77.0 |
| MS.gene000293.t1 | AT5G50130 | 29.744 | 195 | 120 | 5 | 69 | 258 | 8 | 190 | 4.43e-16 | 76.6 |
| MS.gene000293.t1 | AT5G50130 | 29.744 | 195 | 120 | 5 | 69 | 258 | 8 | 190 | 6.97e-16 | 76.3 |
| MS.gene000293.t1 | AT5G02540 | 34.197 | 193 | 112 | 6 | 74 | 262 | 43 | 224 | 2.86e-15 | 75.1 |
| MS.gene000293.t1 | AT4G11410 | 30.000 | 200 | 125 | 4 | 67 | 262 | 32 | 220 | 2.17e-14 | 71.6 |
| MS.gene000293.t1 | AT4G23430 | 31.122 | 196 | 118 | 4 | 67 | 262 | 32 | 210 | 2.85e-14 | 72.0 |
| MS.gene000293.t1 | AT4G27760 | 31.441 | 229 | 132 | 11 | 40 | 258 | 32 | 245 | 4.90e-14 | 71.6 |
| MS.gene000293.t1 | AT5G54190 | 27.230 | 213 | 129 | 6 | 64 | 257 | 92 | 297 | 5.13e-14 | 71.6 |
| MS.gene000293.t1 | AT4G11410 | 29.851 | 201 | 126 | 4 | 66 | 262 | 31 | 220 | 7.39e-14 | 70.9 |
| MS.gene000293.t1 | AT5G61830 | 31.973 | 147 | 93 | 2 | 66 | 211 | 38 | 178 | 1.52e-13 | 69.7 |
| MS.gene000293.t1 | AT5G61830 | 31.973 | 147 | 93 | 2 | 66 | 211 | 38 | 178 | 1.52e-13 | 69.7 |
| MS.gene000293.t1 | AT4G23430 | 30.612 | 196 | 117 | 4 | 67 | 262 | 32 | 208 | 2.22e-13 | 69.3 |
| MS.gene000293.t1 | AT5G53090 | 31.579 | 228 | 133 | 10 | 40 | 258 | 31 | 244 | 3.13e-13 | 69.3 |
| MS.gene000293.t1 | AT1G03630 | 28.774 | 212 | 126 | 6 | 64 | 257 | 87 | 291 | 3.77e-12 | 66.2 |
| MS.gene000293.t1 | AT1G03630 | 28.774 | 212 | 126 | 6 | 64 | 257 | 89 | 293 | 3.79e-12 | 66.2 |
| MS.gene000293.t1 | AT4G27440 | 27.570 | 214 | 129 | 6 | 64 | 258 | 88 | 294 | 1.04e-11 | 65.1 |
| MS.gene000293.t1 | AT4G27440 | 27.570 | 214 | 129 | 6 | 64 | 258 | 88 | 294 | 1.04e-11 | 65.1 |
Find 0 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAAAATAAAAGTTGATT+TGG | - | 43389:185020-185039 | None:intergenic | 15.0% |
| !!! | ATAAAAGGATTTAAAACATA+AGG | - | 43389:183185-183204 | None:intergenic | 15.0% |
| !! | ATAAATAAATTATGCAGATC+AGG | - | 43389:184192-184211 | None:intergenic | 20.0% |
| !! | CAAAATTCTATCTTTATCAT+TGG | + | 43389:184091-184110 | MS.gene000293:intron | 20.0% |
| !! | CATAATTTATTTATGCTTTG+GGG | + | 43389:184198-184217 | MS.gene000293:intron | 20.0% |
| !! | GCATAATTTATTTATGCTTT+GGG | + | 43389:184197-184216 | MS.gene000293:intron | 20.0% |
| !! | TGCATAATTTATTTATGCTT+TGG | + | 43389:184196-184215 | MS.gene000293:intron | 20.0% |
| !!! | GAAAATCAGTAAGTATTTTA+TGG | - | 43389:184683-184702 | None:intergenic | 20.0% |
| !!! | GGGAAATATTAATTTGATAA+AGG | + | 43389:182779-182798 | MS.gene000293:CDS | 20.0% |
| !!! | TACAATTGATGCATTTTTAT+GGG | + | 43389:184343-184362 | MS.gene000293:intron | 20.0% |
| !!! | TAGGTTATTTGTTTTTGTAT+AGG | + | 43389:185079-185098 | MS.gene000293:intron | 20.0% |
| !!! | TCTATTTTGTCAAATTTCTA+TGG | + | 43389:183503-183522 | MS.gene000293:intron | 20.0% |
| !!! | TGATGTTACATTAACAATTT+TGG | - | 43389:184566-184585 | None:intergenic | 20.0% |
| !!! | TTGATCAATTTTATTGTGAA+TGG | - | 43389:183279-183298 | None:intergenic | 20.0% |
| !!! | TTGTGTGTTTTTATAACTAT+AGG | + | 43389:185060-185079 | MS.gene000293:intron | 20.0% |
| ! | AAAAAGTGGTAATAAAAGCT+TGG | - | 43389:184524-184543 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAGAACTTACAC+CGG | - | 43389:182988-183007 | None:intergenic | 25.0% |
| ! | AATAATGAAATTTGCAAGAG+AGG | - | 43389:183015-183034 | None:intergenic | 25.0% |
| ! | AATAGTGTTGTAGAAAATAG+TGG | - | 43389:183219-183238 | None:intergenic | 25.0% |
| ! | ATAATGAAATTTGCAAGAGA+GGG | - | 43389:183014-183033 | None:intergenic | 25.0% |
| ! | ATGATCAGCACAAATTATAT+CGG | + | 43389:184484-184503 | MS.gene000293:CDS | 25.0% |
| ! | CAAATACTAATAAACAATGC+CGG | + | 43389:183982-184001 | MS.gene000293:CDS | 25.0% |
| ! | TAGACCATAACAAAGATTAA+AGG | + | 43389:183838-183857 | MS.gene000293:intron | 25.0% |
| ! | TTATAAAAACACACAACACT+TGG | - | 43389:185056-185075 | None:intergenic | 25.0% |
| !! | GTACAATTGATGCATTTTTA+TGG | + | 43389:184342-184361 | MS.gene000293:intron | 25.0% |
| !!! | CTATCATTTTTTTTCTGTGT+AGG | + | 43389:183047-183066 | MS.gene000293:intron | 25.0% |
| !!! | TTAAATGTCAACTTTTGAGA+TGG | + | 43389:184243-184262 | MS.gene000293:intron | 25.0% |
| !!! | TTAACAATTTTGGAAGATAC+AGG | - | 43389:184556-184575 | None:intergenic | 25.0% |
| AAAAGCTTGGTCATAACAAA+TGG | - | 43389:184511-184530 | None:intergenic | 30.0% | |
| AAAGATTAAAGGTTGGAATG+AGG | + | 43389:183849-183868 | MS.gene000293:CDS | 30.0% | |
| AAAGCTTGGTCATAACAAAT+GGG | - | 43389:184510-184529 | None:intergenic | 30.0% | |
| AACAAAAATACGTGCTAGTT+AGG | - | 43389:184908-184927 | None:intergenic | 30.0% | |
| ATTAAGATCTTCACAATGCA+TGG | - | 43389:183797-183816 | None:intergenic | 30.0% | |
| CCAACCTTTAATCTTTGTTA+TGG | - | 43389:183845-183864 | None:intergenic | 30.0% | |
| CCATAACAAAGATTAAAGGT+TGG | + | 43389:183842-183861 | MS.gene000293:CDS | 30.0% | |
| TCCTCATTACCAATTGTTTA+AGG | + | 43389:182881-182900 | MS.gene000293:CDS | 30.0% | |
| TGGTGTATGTGTCTATATAT+TGG | + | 43389:183568-183587 | MS.gene000293:intron | 30.0% | |
| TGTTATGGTCTATCAAACAA+CGG | - | 43389:183830-183849 | None:intergenic | 30.0% | |
| TTCTTCAGTTACTAATATGC+AGG | + | 43389:184743-184762 | MS.gene000293:intron | 30.0% | |
| ! | ACCTTTTATTGTGTTATGCA+AGG | - | 43389:184137-184156 | None:intergenic | 30.0% |
| ! | AGAGCTTTATATAATCACAG+TGG | - | 43389:183311-183330 | None:intergenic | 30.0% |
| ! | GAAGGATATGTTGTTGTTAT+TGG | + | 43389:183114-183133 | MS.gene000293:CDS | 30.0% |
| ! | GTGGATTGTTAGCATATAAA+AGG | - | 43389:183200-183219 | None:intergenic | 30.0% |
| ! | TTTTCGACACACTCTATTAT+TGG | - | 43389:183633-183652 | None:intergenic | 30.0% |
| !! | TCCTTAAACAATTGGTAATG+AGG | - | 43389:182885-182904 | None:intergenic | 30.0% |
| !! | TTATTTATGCTTTGGGGATA+TGG | + | 43389:184204-184223 | MS.gene000293:intron | 30.0% |
| !!! | CTTACTGATTTTCTCTACAA+TGG | + | 43389:184690-184709 | MS.gene000293:intron | 30.0% |
| AACAACAACATATCCTTCCT+TGG | - | 43389:183112-183131 | None:intergenic | 35.0% | |
| AACAGGCTTATTAGGAAAAG+TGG | - | 43389:182955-182974 | None:intergenic | 35.0% | |
| AACCACTAACACAGAAGATT+AGG | - | 43389:184069-184088 | None:intergenic | 35.0% | |
| ACTTTCTATTAGTGCATGTC+TGG | - | 43389:183391-183410 | None:intergenic | 35.0% | |
| AGACATGCACTAATAGAAAG+TGG | + | 43389:183390-183409 | MS.gene000293:intron | 35.0% | |
| AGAGCGAATCCTTAAACAAT+TGG | - | 43389:182893-182912 | None:intergenic | 35.0% | |
| ATACGTGCTAGTTAGGAATT+AGG | - | 43389:184901-184920 | None:intergenic | 35.0% | |
| ATGAGGAAATGCAACAGAAA+AGG | - | 43389:182868-182887 | None:intergenic | 35.0% | |
| ATTGACATGATCACGAGATT+TGG | - | 43389:183356-183375 | None:intergenic | 35.0% | |
| CACAACACTTGGAAAAAAGA+TGG | - | 43389:185045-185064 | None:intergenic | 35.0% | |
| CTCGATTCAATTCTTGAGAA+TGG | + | 43389:182830-182849 | MS.gene000293:CDS | 35.0% | |
| GAGAGAGTGGAAAATATAGT+TGG | - | 43389:184459-184478 | None:intergenic | 35.0% | |
| GCCTTGCATAACACAATAAA+AGG | + | 43389:184133-184152 | MS.gene000293:intron | 35.0% | |
| GCTTTATATAATCACAGTGG+TGG | - | 43389:183308-183327 | None:intergenic | 35.0% | |
| TACGTGCTAGTTAGGAATTA+GGG | - | 43389:184900-184919 | None:intergenic | 35.0% | |
| TACTCATAGATCTGAGCATA+TGG | - | 43389:184819-184838 | None:intergenic | 35.0% | |
| TATCAGTTCCATAAAGTTCC+TGG | - | 43389:184292-184311 | None:intergenic | 35.0% | |
| TTCCTAATCTTCTGTGTTAG+TGG | + | 43389:184064-184083 | MS.gene000293:intron | 35.0% | |
| TTGATGAGGGAACTGTATTT+GGG | + | 43389:184766-184785 | MS.gene000293:CDS | 35.0% | |
| TTGTACTGAGCAATGCAAAT+CGG | - | 43389:183965-183984 | None:intergenic | 35.0% | |
| ! | TATATTTTCCACTCTCTCTC+AGG | + | 43389:184461-184480 | MS.gene000293:intron | 35.0% |
| !! | ACTAATATGCAGGTTGATGA+GGG | + | 43389:184753-184772 | MS.gene000293:CDS | 35.0% |
| !! | TACTAATATGCAGGTTGATG+AGG | + | 43389:184752-184771 | MS.gene000293:CDS | 35.0% |
| AAATGATTGTCCTACCAGCT+CGG | - | 43389:184597-184616 | None:intergenic | 40.0% | |
| ACAAAATCATATCCCACCCA+AGG | + | 43389:182919-182938 | MS.gene000293:CDS | 40.0% | |
| ACAGGACTGCTTTCAAAAAG+TGG | - | 43389:184538-184557 | None:intergenic | 40.0% | |
| AGAGCTTGAGAAGGTTCTAT+AGG | - | 43389:184722-184741 | None:intergenic | 40.0% | |
| ATCAGAGCAATTGTTGTCAG+AGG | + | 43389:183730-183749 | MS.gene000293:CDS | 40.0% | |
| ATGACGCAAACAGGCTTATT+AGG | - | 43389:182963-182982 | None:intergenic | 40.0% | |
| ATTTGCATGACATGATCACC+AGG | + | 43389:184271-184290 | MS.gene000293:intron | 40.0% | |
| CATGATCACCAGGAACTTTA+TGG | + | 43389:184281-184300 | MS.gene000293:intron | 40.0% | |
| CGTGGTCTAGGTTATTTAGT+GGG | + | 43389:183600-183619 | MS.gene000293:intron | 40.0% | |
| CTGAAGAAAAGAGCTTGAGA+AGG | - | 43389:184731-184750 | None:intergenic | 40.0% | |
| GAGAGTAAAACCCAAAGAGT+AGG | - | 43389:184658-184677 | None:intergenic | 40.0% | |
| GCATTCTTACCTAAGATTCC+CGG | + | 43389:183685-183704 | MS.gene000293:intron | 40.0% | |
| GGCTTATTAGGAAAAGTGGA+AGG | - | 43389:182951-182970 | None:intergenic | 40.0% | |
| GTCTAGTGATCCTACTCTTT+GGG | + | 43389:184645-184664 | MS.gene000293:intron | 40.0% | |
| TAAAGTTCAGTACTTCCCTG+CGG | + | 43389:183923-183942 | MS.gene000293:CDS | 40.0% | |
| TAGTCACAACTCACAAGTGT+CGG | - | 43389:183470-183489 | None:intergenic | 40.0% | |
| TCAAGAATTGAATCGAGCAG+AGG | - | 43389:182827-182846 | None:intergenic | 40.0% | |
| TCTGATGAGATTTACCCATC+TGG | - | 43389:184978-184997 | None:intergenic | 40.0% | |
| TTAGTGCATGTCTGGATTGA+TGG | - | 43389:183383-183402 | None:intergenic | 40.0% | |
| TTGTGTTGTGTCTGGTGTAT+TGG | + | 43389:183548-183567 | MS.gene000293:intron | 40.0% | |
| TTTCTATGGTGTCTATGCGT+CGG | + | 43389:183517-183536 | MS.gene000293:intron | 40.0% | |
| ! | ATATATTGGTGCTTCTTGCG+TGG | + | 43389:183582-183601 | MS.gene000293:intron | 40.0% |
| ! | GTTGATGAGGGAACTGTATT+TGG | + | 43389:184765-184784 | MS.gene000293:CDS | 40.0% |
| ! | TAATTGACTCAACCGACGAA+AGG | - | 43389:183903-183922 | None:intergenic | 40.0% |
| ! | TTTTCTGTGTAGGCAACATC+TGG | + | 43389:183057-183076 | MS.gene000293:intron | 40.0% |
| AAAGTGGAAGGTGAAGACCT+TGG | - | 43389:182939-182958 | None:intergenic | 45.0% | |
| AAGTGGAAGGTGAAGACCTT+GGG | - | 43389:182938-182957 | None:intergenic | 45.0% | |
| ACATCATTTACTCACCGAGC+TGG | + | 43389:184580-184599 | MS.gene000293:CDS | 45.0% | |
| AGGCGATGTTGCAAGTATTC+CGG | - | 43389:184004-184023 | None:intergenic | 45.0% | |
| AGTGCGTGTTTGACATGTGT+TGG | + | 43389:183441-183460 | MS.gene000293:intron | 45.0% | |
| CAATCCATACCGGGAATCTT+AGG | - | 43389:183697-183716 | None:intergenic | 45.0% | |
| CGTCTAGTGATCCTACTCTT+TGG | + | 43389:184644-184663 | MS.gene000293:intron | 45.0% | |
| CTTACCTAAGATTCCCGGTA+TGG | + | 43389:183690-183709 | MS.gene000293:intron | 45.0% | |
| GCGTGGTCTAGGTTATTTAG+TGG | + | 43389:183599-183618 | MS.gene000293:intron | 45.0% | |
| TACCCATCTGGCAAAGTTGT+CGG | - | 43389:184966-184985 | None:intergenic | 45.0% | |
| TACTGCATGCAAGCTTTCCA+AGG | + | 43389:183092-183111 | MS.gene000293:CDS | 45.0% | |
| TCTTGAGAATGGCGTTGCTT+TGG | + | 43389:182841-182860 | MS.gene000293:CDS | 45.0% | |
| TGTCAGTGTTGTGTTGTGTC+TGG | + | 43389:183540-183559 | MS.gene000293:intron | 45.0% | |
| ! | GGAAGCATGCACTTAGAAAG+TGG | - | 43389:183258-183277 | None:intergenic | 45.0% |
| !! | AGCCTGAAAAGCTTTGAGGT+GGG | - | 43389:183878-183897 | None:intergenic | 45.0% |
| !! | TTTTCAGGCTGACCTTTCGT+CGG | + | 43389:183888-183907 | MS.gene000293:CDS | 45.0% |
| AAGCCTGTTTGCGTCATCAC+CGG | + | 43389:182966-182985 | MS.gene000293:CDS | 50.0% | |
| ATGCAAGGCAAGCATGAGCA+TGG | - | 43389:184122-184141 | None:intergenic | 50.0% | |
| CACCGACAACTTTGCCAGAT+GGG | + | 43389:184961-184980 | MS.gene000293:CDS | 50.0% | |
| CATTTACTCACCGAGCTGGT+AGG | + | 43389:184584-184603 | MS.gene000293:intron | 50.0% | |
| CCACTGCATCAATCCATACC+GGG | - | 43389:183706-183725 | None:intergenic | 50.0% | |
| CCCACTGCATCAATCCATAC+CGG | - | 43389:183707-183726 | None:intergenic | 50.0% | |
| CTGATCATCCTGAGAGAGAG+TGG | - | 43389:184472-184491 | None:intergenic | 50.0% | |
| GCATGCAAGCTTTCCAAGGA+AGG | + | 43389:183096-183115 | MS.gene000293:CDS | 50.0% | |
| GGTCAGCCTGAAAAGCTTTG+AGG | - | 43389:183882-183901 | None:intergenic | 50.0% | |
| TGTGTAGGCAACATCTGGCT+TGG | + | 43389:183062-183081 | MS.gene000293:intron | 50.0% | |
| ! | CCGGTATGGATTGATGCAGT+GGG | + | 43389:183704-183723 | MS.gene000293:intron | 50.0% |
| ! | GTGTAGGCAACATCTGGCTT+GGG | + | 43389:183063-183082 | MS.gene000293:intron | 50.0% |
| ! | TGCCCACCTCAAAGCTTTTC+AGG | + | 43389:183873-183892 | MS.gene000293:CDS | 50.0% |
| !! | CAGCCTGAAAAGCTTTGAGG+TGG | - | 43389:183879-183898 | None:intergenic | 50.0% |
| ATCGCCTAGAGTCACAGCTG+AGG | + | 43389:184017-184036 | MS.gene000293:CDS | 55.0% | |
| CCACCGACAACTTTGCCAGA+TGG | + | 43389:184960-184979 | MS.gene000293:CDS | 55.0% | |
| CCATCTGGCAAAGTTGTCGG+TGG | - | 43389:184963-184982 | None:intergenic | 55.0% | |
| GGAAGGTGAAGACCTTGGGT+GGG | - | 43389:182934-182953 | None:intergenic | 55.0% | |
| TAGCCCTCAGCTGTGACTCT+AGG | - | 43389:184024-184043 | None:intergenic | 55.0% | |
| TCGCCTAGAGTCACAGCTGA+GGG | + | 43389:184018-184037 | MS.gene000293:CDS | 55.0% | |
| TGGAAGGTGAAGACCTTGGG+TGG | - | 43389:182935-182954 | None:intergenic | 55.0% | |
| TGGTGCTTCTTGCGTGGTCT+AGG | + | 43389:183588-183607 | MS.gene000293:intron | 55.0% | |
| ! | ACACCGGTGATGACGCAAAC+AGG | - | 43389:182972-182991 | None:intergenic | 55.0% |
| ! | CCCGGTATGGATTGATGCAG+TGG | + | 43389:183703-183722 | MS.gene000293:intron | 55.0% |
| AATCCAGAAGCCACTGCCGC+AGG | - | 43389:183942-183961 | None:intergenic | 60.0% | |
| ATCCAGAAGCCACTGCCGCA+GGG | - | 43389:183941-183960 | None:intergenic | 60.0% | |
| TCAGTACTTCCCTGCGGCAG+TGG | + | 43389:183929-183948 | MS.gene000293:CDS | 60.0% | |
| TTCCCTGCGGCAGTGGCTTC+TGG | + | 43389:183936-183955 | MS.gene000293:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43389 | gene | 182777 | 185113 | 182777 | ID=MS.gene000293 |
| 43389 | mRNA | 182777 | 185113 | 182777 | ID=MS.gene000293.t1;Parent=MS.gene000293 |
| 43389 | exon | 182777 | 182989 | 182777 | ID=MS.gene000293.t1.exon1;Parent=MS.gene000293.t1 |
| 43389 | CDS | 182777 | 182989 | 182777 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 183069 | 183135 | 183069 | ID=MS.gene000293.t1.exon2;Parent=MS.gene000293.t1 |
| 43389 | CDS | 183069 | 183135 | 183069 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 183723 | 183751 | 183723 | ID=MS.gene000293.t1.exon3;Parent=MS.gene000293.t1 |
| 43389 | CDS | 183723 | 183751 | 183723 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 183841 | 184049 | 183841 | ID=MS.gene000293.t1.exon4;Parent=MS.gene000293.t1 |
| 43389 | CDS | 183841 | 184049 | 183841 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 184483 | 184601 | 184483 | ID=MS.gene000293.t1.exon5;Parent=MS.gene000293.t1 |
| 43389 | CDS | 184483 | 184601 | 184483 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 184751 | 184846 | 184751 | ID=MS.gene000293.t1.exon6;Parent=MS.gene000293.t1 |
| 43389 | CDS | 184751 | 184846 | 184751 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 184932 | 185007 | 184932 | ID=MS.gene000293.t1.exon7;Parent=MS.gene000293.t1 |
| 43389 | CDS | 184932 | 185007 | 184932 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| 43389 | exon | 185101 | 185113 | 185101 | ID=MS.gene000293.t1.exon8;Parent=MS.gene000293.t1 |
| 43389 | CDS | 185101 | 185113 | 185101 | ID=cds.MS.gene000293.t1;Parent=MS.gene000293.t1 |
| Gene Sequence |
| Protein sequence |
