Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061893.t1 | AES81717.1 | 96.9 | 324 | 10 | 0 | 1 | 324 | 1 | 324 | 1.10E-172 | 615.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061893.t1 | A2RVM0 | 58.9 | 314 | 127 | 2 | 10 | 322 | 5 | 317 | 1.1e-98 | 361.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061893.t1 | G7L0K2 | 96.9 | 324 | 10 | 0 | 1 | 324 | 1 | 324 | 7.6e-173 | 615.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene061893 | 0.809485 | 1.85E-50 | -1.69E-46 |
MS.gene049341 | MS.gene061893 | 0.827839 | 1.25E-54 | -1.69E-46 |
MS.gene049821 | MS.gene061893 | 0.800656 | 1.30E-48 | -1.69E-46 |
MS.gene049979 | MS.gene061893 | 0.806399 | 8.38E-50 | -1.69E-46 |
MS.gene050020 | MS.gene061893 | 0.89061 | 8.43E-74 | -1.69E-46 |
MS.gene05016 | MS.gene061893 | 0.831065 | 2.06E-55 | -1.69E-46 |
MS.gene050584 | MS.gene061893 | 0.861675 | 8.68E-64 | -1.69E-46 |
MS.gene050585 | MS.gene061893 | 0.841913 | 3.56E-58 | -1.69E-46 |
MS.gene050586 | MS.gene061893 | 0.865482 | 5.72E-65 | -1.69E-46 |
MS.gene050587 | MS.gene061893 | 0.840749 | 7.21E-58 | -1.69E-46 |
MS.gene050762 | MS.gene061893 | 0.824403 | 8.23E-54 | -1.69E-46 |
MS.gene050763 | MS.gene061893 | 0.824007 | 1.02E-53 | -1.69E-46 |
MS.gene050807 | MS.gene061893 | 0.859787 | 3.25E-63 | -1.69E-46 |
MS.gene050808 | MS.gene061893 | 0.830609 | 2.67E-55 | -1.69E-46 |
MS.gene050815 | MS.gene061893 | 0.825487 | 4.56E-54 | -1.69E-46 |
MS.gene05157 | MS.gene061893 | 0.804181 | 2.44E-49 | -1.69E-46 |
MS.gene051626 | MS.gene061893 | 0.814336 | 1.62E-51 | -1.69E-46 |
MS.gene051789 | MS.gene061893 | 0.886856 | 2.38E-72 | -1.69E-46 |
MS.gene052133 | MS.gene061893 | 0.82027 | 7.50E-53 | -1.69E-46 |
MS.gene052142 | MS.gene061893 | 0.828625 | 8.10E-55 | -1.69E-46 |
MS.gene052323 | MS.gene061893 | 0.811457 | 6.93E-51 | -1.69E-46 |
MS.gene052665 | MS.gene061893 | 0.853073 | 3.04E-61 | -1.69E-46 |
MS.gene052967 | MS.gene061893 | 0.814999 | 1.16E-51 | -1.69E-46 |
MS.gene053074 | MS.gene061893 | 0.867707 | 1.12E-65 | -1.69E-46 |
MS.gene053204 | MS.gene061893 | 0.803747 | 3.01E-49 | -1.69E-46 |
MS.gene053563 | MS.gene061893 | 0.834921 | 2.27E-56 | -1.69E-46 |
MS.gene053581 | MS.gene061893 | 0.800503 | 1.40E-48 | -1.69E-46 |
MS.gene053630 | MS.gene061893 | 0.81856 | 1.84E-52 | -1.69E-46 |
MS.gene054379 | MS.gene061893 | 0.816525 | 5.29E-52 | -1.69E-46 |
MS.gene05456 | MS.gene061893 | 0.871567 | 6.19E-67 | -1.69E-46 |
MS.gene054596 | MS.gene061893 | 0.818291 | 2.12E-52 | -1.69E-46 |
MS.gene055207 | MS.gene061893 | 0.840728 | 7.30E-58 | -1.69E-46 |
MS.gene055359 | MS.gene061893 | 0.803197 | 3.91E-49 | -1.69E-46 |
MS.gene055512 | MS.gene061893 | 0.800001 | 1.77E-48 | -1.69E-46 |
MS.gene05604 | MS.gene061893 | 0.812035 | 5.19E-51 | -1.69E-46 |
MS.gene056069 | MS.gene061893 | -0.838081 | 3.55E-57 | -1.69E-46 |
MS.gene056589 | MS.gene061893 | 0.812749 | 3.63E-51 | -1.69E-46 |
MS.gene056643 | MS.gene061893 | 0.812264 | 4.63E-51 | -1.69E-46 |
MS.gene056760 | MS.gene061893 | 0.838573 | 2.65E-57 | -1.69E-46 |
MS.gene057060 | MS.gene061893 | 0.823286 | 1.50E-53 | -1.69E-46 |
MS.gene057869 | MS.gene061893 | 0.806527 | 7.88E-50 | -1.69E-46 |
MS.gene058168 | MS.gene061893 | 0.830149 | 3.46E-55 | -1.69E-46 |
MS.gene058982 | MS.gene061893 | 0.815571 | 8.64E-52 | -1.69E-46 |
MS.gene059006 | MS.gene061893 | 0.871452 | 6.76E-67 | -1.69E-46 |
MS.gene059124 | MS.gene061893 | 0.820785 | 5.71E-53 | -1.69E-46 |
MS.gene059937 | MS.gene061893 | 0.821226 | 4.52E-53 | -1.69E-46 |
MS.gene060470 | MS.gene061893 | 0.805185 | 1.51E-49 | -1.69E-46 |
MS.gene060480 | MS.gene061893 | 0.818696 | 1.71E-52 | -1.69E-46 |
MS.gene060803 | MS.gene061893 | 0.810692 | 1.02E-50 | -1.69E-46 |
MS.gene061176 | MS.gene061893 | 0.80298 | 4.34E-49 | -1.69E-46 |
MS.gene061177 | MS.gene061893 | 0.802297 | 6.00E-49 | -1.69E-46 |
MS.gene061178 | MS.gene061893 | 0.802628 | 5.13E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061893.t1 | MTR_7g099850 | 96.914 | 324 | 10 | 0 | 1 | 324 | 1 | 324 | 0.0 | 653 |
MS.gene061893.t1 | MTR_1g068970 | 84.259 | 324 | 50 | 1 | 1 | 324 | 1 | 323 | 0.0 | 578 |
MS.gene061893.t1 | MTR_1g068970 | 82.879 | 257 | 43 | 1 | 68 | 324 | 1 | 256 | 5.82e-163 | 454 |
MS.gene061893.t1 | MTR_8g098415 | 57.235 | 311 | 132 | 1 | 10 | 320 | 5 | 314 | 3.64e-129 | 371 |
MS.gene061893.t1 | MTR_8g098415 | 56.958 | 309 | 132 | 1 | 10 | 318 | 5 | 312 | 8.15e-129 | 370 |
MS.gene061893.t1 | MTR_1g100315 | 59.150 | 306 | 124 | 1 | 13 | 318 | 8 | 312 | 9.94e-129 | 370 |
MS.gene061893.t1 | MTR_1g100395 | 59.150 | 306 | 124 | 1 | 13 | 318 | 8 | 312 | 1.38e-128 | 370 |
MS.gene061893.t1 | MTR_1g100305 | 57.843 | 306 | 128 | 1 | 13 | 318 | 8 | 312 | 1.56e-128 | 370 |
MS.gene061893.t1 | MTR_1g100335 | 58.497 | 306 | 126 | 1 | 13 | 318 | 8 | 312 | 2.42e-126 | 364 |
MS.gene061893.t1 | MTR_6g053550 | 57.792 | 308 | 126 | 3 | 14 | 318 | 17 | 323 | 5.02e-118 | 343 |
MS.gene061893.t1 | MTR_3g077410 | 49.226 | 323 | 159 | 3 | 1 | 319 | 1 | 322 | 7.92e-103 | 305 |
MS.gene061893.t1 | MTR_1g100335 | 58.964 | 251 | 102 | 1 | 13 | 263 | 8 | 257 | 5.77e-100 | 295 |
MS.gene061893.t1 | MTR_8g098415 | 55.039 | 258 | 115 | 1 | 63 | 320 | 1 | 257 | 9.60e-100 | 294 |
MS.gene061893.t1 | MTR_1g100335 | 61.441 | 236 | 90 | 1 | 13 | 248 | 8 | 242 | 1.11e-99 | 294 |
MS.gene061893.t1 | MTR_8g099995 | 48.494 | 332 | 158 | 4 | 1 | 324 | 1 | 327 | 1.86e-99 | 296 |
MS.gene061893.t1 | MTR_4g105310 | 47.678 | 323 | 164 | 3 | 1 | 319 | 12 | 333 | 3.80e-97 | 291 |
MS.gene061893.t1 | MTR_6g053600 | 55.894 | 263 | 112 | 2 | 15 | 274 | 4 | 265 | 4.20e-93 | 279 |
MS.gene061893.t1 | MTR_8g098415 | 60.648 | 216 | 84 | 1 | 10 | 225 | 5 | 219 | 8.46e-90 | 268 |
MS.gene061893.t1 | MTR_4g105310 | 50.000 | 248 | 120 | 2 | 1 | 245 | 12 | 258 | 3.54e-77 | 237 |
MS.gene061893.t1 | MTR_6g081020 | 31.132 | 318 | 179 | 10 | 33 | 324 | 60 | 363 | 3.30e-28 | 112 |
MS.gene061893.t1 | MTR_2g079710 | 32.508 | 323 | 164 | 12 | 36 | 318 | 88 | 396 | 5.13e-27 | 109 |
MS.gene061893.t1 | MTR_3g009190 | 28.383 | 303 | 188 | 8 | 37 | 319 | 83 | 376 | 4.66e-23 | 98.6 |
MS.gene061893.t1 | MTR_3g009190 | 28.383 | 303 | 188 | 8 | 37 | 319 | 65 | 358 | 4.67e-23 | 98.6 |
MS.gene061893.t1 | MTR_6g453040 | 27.723 | 303 | 190 | 8 | 37 | 319 | 43 | 336 | 3.88e-22 | 95.5 |
MS.gene061893.t1 | MTR_3g009190 | 27.815 | 302 | 189 | 8 | 38 | 319 | 65 | 357 | 1.09e-20 | 91.7 |
MS.gene061893.t1 | MTR_6g041980 | 26.829 | 287 | 184 | 6 | 38 | 321 | 70 | 333 | 1.13e-20 | 91.3 |
MS.gene061893.t1 | MTR_3g091070 | 27.609 | 297 | 180 | 11 | 37 | 319 | 43 | 318 | 5.27e-20 | 89.4 |
MS.gene061893.t1 | MTR_8g022500 | 41.593 | 113 | 41 | 1 | 39 | 151 | 431 | 518 | 2.34e-16 | 80.1 |
MS.gene061893.t1 | MTR_6g453040 | 29.756 | 205 | 120 | 5 | 37 | 226 | 65 | 260 | 2.90e-15 | 75.5 |
MS.gene061893.t1 | MTR_6g041980 | 27.083 | 192 | 126 | 3 | 38 | 223 | 70 | 253 | 3.57e-15 | 74.7 |
MS.gene061893.t1 | MTR_1g100345 | 46.970 | 66 | 35 | 0 | 38 | 103 | 4 | 69 | 1.96e-12 | 62.8 |
MS.gene061893.t1 | MTR_6g453040 | 29.801 | 151 | 92 | 3 | 37 | 179 | 65 | 209 | 3.57e-12 | 65.9 |
MS.gene061893.t1 | MTR_7g106800 | 31.977 | 172 | 101 | 5 | 37 | 202 | 11 | 172 | 1.67e-11 | 63.9 |
MS.gene061893.t1 | MTR_7g076660 | 25.263 | 285 | 168 | 9 | 37 | 290 | 10 | 280 | 2.99e-11 | 63.5 |
MS.gene061893.t1 | MTR_7g076660 | 25.263 | 285 | 168 | 9 | 37 | 290 | 9 | 279 | 3.26e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061893.t1 | AT2G37540 | 67.702 | 322 | 103 | 1 | 2 | 323 | 1 | 321 | 3.97e-166 | 465 |
MS.gene061893.t1 | AT5G02540 | 69.255 | 322 | 98 | 1 | 2 | 323 | 1 | 321 | 8.20e-162 | 454 |
MS.gene061893.t1 | AT4G23430 | 58.917 | 314 | 127 | 2 | 10 | 322 | 5 | 317 | 9.52e-134 | 383 |
MS.gene061893.t1 | AT4G11410 | 59.344 | 305 | 123 | 1 | 13 | 317 | 8 | 311 | 2.73e-132 | 379 |
MS.gene061893.t1 | AT4G23420 | 58.974 | 312 | 126 | 2 | 10 | 320 | 5 | 315 | 3.91e-132 | 379 |
MS.gene061893.t1 | AT4G23420 | 58.974 | 312 | 126 | 2 | 10 | 320 | 5 | 315 | 3.91e-132 | 379 |
MS.gene061893.t1 | AT4G23430 | 58.599 | 314 | 126 | 3 | 10 | 322 | 5 | 315 | 6.25e-131 | 376 |
MS.gene061893.t1 | AT4G23420 | 59.283 | 307 | 123 | 2 | 15 | 320 | 27 | 332 | 6.60e-131 | 376 |
MS.gene061893.t1 | AT2G37540 | 68.400 | 250 | 78 | 1 | 2 | 251 | 1 | 249 | 6.06e-127 | 363 |
MS.gene061893.t1 | AT4G23430 | 56.051 | 314 | 126 | 3 | 10 | 322 | 5 | 307 | 8.61e-124 | 357 |
MS.gene061893.t1 | AT4G23430 | 55.732 | 314 | 125 | 4 | 10 | 322 | 5 | 305 | 6.56e-121 | 350 |
MS.gene061893.t1 | AT4G11410 | 59.449 | 254 | 101 | 2 | 13 | 266 | 8 | 259 | 7.90e-106 | 310 |
MS.gene061893.t1 | AT4G23420 | 57.915 | 259 | 107 | 2 | 10 | 267 | 5 | 262 | 9.65e-105 | 307 |
MS.gene061893.t1 | AT4G24050 | 52.050 | 317 | 148 | 3 | 10 | 323 | 10 | 325 | 4.74e-104 | 308 |
MS.gene061893.t1 | AT4G23420 | 60.338 | 237 | 93 | 1 | 10 | 246 | 5 | 240 | 4.00e-102 | 300 |
MS.gene061893.t1 | AT5G50130 | 48.765 | 324 | 159 | 5 | 1 | 319 | 1 | 322 | 1.53e-94 | 284 |
MS.gene061893.t1 | AT1G64590 | 48.185 | 303 | 149 | 4 | 22 | 319 | 22 | 321 | 5.67e-84 | 257 |
MS.gene061893.t1 | AT4G24050 | 50.741 | 270 | 127 | 4 | 8 | 274 | 8 | 274 | 5.77e-82 | 249 |
MS.gene061893.t1 | AT5G50130 | 47.535 | 284 | 145 | 3 | 39 | 320 | 8 | 289 | 1.38e-80 | 247 |
MS.gene061893.t1 | AT5G50130 | 47.368 | 285 | 145 | 4 | 39 | 320 | 8 | 290 | 1.90e-79 | 244 |
MS.gene061893.t1 | AT5G50130 | 50.202 | 247 | 120 | 2 | 1 | 245 | 1 | 246 | 2.07e-77 | 238 |
MS.gene061893.t1 | AT5G50130 | 47.670 | 279 | 139 | 5 | 1 | 274 | 1 | 277 | 2.07e-77 | 240 |
MS.gene061893.t1 | AT5G50130 | 47.500 | 280 | 139 | 6 | 1 | 274 | 1 | 278 | 3.13e-76 | 237 |
MS.gene061893.t1 | AT5G50130 | 50.000 | 248 | 120 | 3 | 1 | 245 | 1 | 247 | 3.19e-76 | 234 |
MS.gene061893.t1 | AT5G50130 | 46.025 | 239 | 124 | 4 | 39 | 274 | 8 | 244 | 1.16e-62 | 201 |
MS.gene061893.t1 | AT5G50130 | 45.833 | 240 | 124 | 5 | 39 | 274 | 8 | 245 | 1.73e-61 | 198 |
MS.gene061893.t1 | AT5G54190 | 31.250 | 320 | 168 | 12 | 38 | 318 | 96 | 402 | 7.18e-30 | 117 |
MS.gene061893.t1 | AT1G03630 | 34.268 | 321 | 160 | 12 | 36 | 318 | 89 | 396 | 9.13e-29 | 114 |
MS.gene061893.t1 | AT1G03630 | 34.268 | 321 | 160 | 12 | 36 | 318 | 91 | 398 | 1.10e-28 | 114 |
MS.gene061893.t1 | AT4G27440 | 31.487 | 343 | 179 | 12 | 19 | 318 | 69 | 398 | 1.66e-27 | 111 |
MS.gene061893.t1 | AT4G27440 | 31.487 | 343 | 179 | 12 | 19 | 318 | 69 | 398 | 1.66e-27 | 111 |
MS.gene061893.t1 | AT4G27760 | 31.046 | 306 | 181 | 10 | 33 | 318 | 56 | 351 | 1.73e-27 | 110 |
MS.gene061893.t1 | AT5G53090 | 32.792 | 308 | 173 | 9 | 33 | 318 | 55 | 350 | 7.65e-27 | 108 |
MS.gene061893.t1 | AT4G09750 | 28.462 | 260 | 167 | 6 | 38 | 294 | 47 | 290 | 9.42e-24 | 99.8 |
MS.gene061893.t1 | AT5G54190 | 29.932 | 294 | 155 | 11 | 63 | 318 | 1 | 281 | 1.80e-22 | 95.5 |
MS.gene061893.t1 | AT5G53100 | 32.686 | 309 | 175 | 11 | 33 | 318 | 43 | 341 | 2.61e-22 | 96.3 |
MS.gene061893.t1 | AT5G15940 | 26.444 | 329 | 207 | 10 | 17 | 321 | 40 | 357 | 4.34e-21 | 92.8 |
MS.gene061893.t1 | AT5G04070 | 27.687 | 307 | 189 | 11 | 38 | 323 | 62 | 356 | 4.49e-21 | 92.8 |
MS.gene061893.t1 | AT5G15940 | 26.444 | 329 | 207 | 10 | 17 | 321 | 41 | 358 | 4.51e-21 | 92.8 |
MS.gene061893.t1 | AT5G15940 | 26.444 | 329 | 207 | 10 | 17 | 321 | 41 | 358 | 4.51e-21 | 92.8 |
MS.gene061893.t1 | AT5G15940 | 27.823 | 248 | 151 | 7 | 17 | 245 | 41 | 279 | 3.52e-18 | 84.0 |
Find 70 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACAAGAGTGTTGGCTCTT+AGG | 0.271288 | 7.2:-12126361 | MS.gene061893:CDS |
ATGGCTGGTCCAAGTGGGTT+TGG | 0.308042 | 7.2:-12130847 | MS.gene061893:CDS |
CCAAGCTTGAAAGGTGTAAC+TGG | 0.309880 | 7.2:-12123593 | MS.gene061893:CDS |
GCAGGAGGAGCAAGTGGTAT+AGG | 0.327892 | 7.2:-12126392 | MS.gene061893:intron |
AACAGTTAGCAAAGAAACTT+TGG | 0.348947 | 7.2:-12123517 | MS.gene061893:CDS |
CAGTTACACCTTTCAAGCTT+GGG | 0.356891 | 7.2:+12123594 | None:intergenic |
TGCAAAAGCAACTGGAATAG+AGG | 0.360987 | 7.2:-12125048 | MS.gene061893:CDS |
GGTGTAATATCGTTGATAAC+AGG | 0.366707 | 7.2:-12130871 | MS.gene061893:CDS |
CCAGTTACACCTTTCAAGCT+TGG | 0.371917 | 7.2:+12123593 | None:intergenic |
GAAGATTTGTCAAGAGGAAA+TGG | 0.402419 | 7.2:+12125093 | None:intergenic |
CAGGAGGAGCAAGTGGTATA+GGG | 0.417261 | 7.2:-12126391 | MS.gene061893:CDS |
ATGTAATATGTTGGCTAACT+TGG | 0.417541 | 7.2:+12124809 | None:intergenic |
AAACAAACTGCAAAAGCAAC+TGG | 0.418273 | 7.2:-12125056 | MS.gene061893:CDS |
TAGATACACTTACTTTAGAA+AGG | 0.428762 | 7.2:-12124994 | MS.gene061893:CDS |
AGAGGAGTCATTATCACTCC+TGG | 0.445561 | 7.2:+12124525 | None:intergenic |
ACAGTTAGCAAAGAAACTTT+GGG | 0.459816 | 7.2:-12123516 | MS.gene061893:CDS |
TCCCTCCTCTGAGAGTTTGA+AGG | 0.466137 | 7.2:+12125509 | None:intergenic |
TTCATTTGCATGTAATATGT+TGG | 0.469410 | 7.2:+12124800 | None:intergenic |
ATCAGCTTCAACTGCAGAGC+AGG | 0.470999 | 7.2:-12130824 | MS.gene061893:CDS |
CAATTTGCAACAAACCATCT+TGG | 0.474711 | 7.2:-12125477 | MS.gene061893:intron |
TGTAACTGGGAAGTACTTTG+TGG | 0.484126 | 7.2:-12123579 | MS.gene061893:CDS |
TATTCTAGCAAGAAGGCCTA+TGG | 0.494558 | 7.2:-12124837 | MS.gene061893:CDS |
TATCAGTTATTCTAGCAAGA+AGG | 0.496219 | 7.2:-12124844 | MS.gene061893:intron |
AAAGTCTGTCCGATCATTCG+TGG | 0.498241 | 7.2:-12126219 | MS.gene061893:CDS |
CAAGAAGAAGATTTGTCAAG+AGG | 0.511567 | 7.2:+12125087 | None:intergenic |
TGAACTCTCTCGTCGCCTGC+AGG | 0.512345 | 7.2:-12124781 | MS.gene061893:intron |
CCCTCCTCTGAGAGTTTGAA+GGG | 0.512532 | 7.2:+12125510 | None:intergenic |
AGGAGCAAGTGGTATAGGGT+TGG | 0.516651 | 7.2:-12126387 | MS.gene061893:CDS |
GGCTAACTTTGTACAATGGT+GGG | 0.518382 | 7.2:-12130892 | None:intergenic |
GCAAAAGCAACTGGAATAGA+GGG | 0.523925 | 7.2:-12125047 | MS.gene061893:CDS |
CACTCCTGGGTGGACAGAGT+TGG | 0.526311 | 7.2:+12124539 | None:intergenic |
AGATACACTTACTTTAGAAA+GGG | 0.527699 | 7.2:-12124993 | MS.gene061893:CDS |
GCACTCCACCCAAGCTTGAA+AGG | 0.529412 | 7.2:-12123602 | MS.gene061893:CDS |
TCGTTGATAACAGGGATGGC+TGG | 0.541160 | 7.2:-12130862 | MS.gene061893:CDS |
GGCTAACTTGGACTGTCCAT+AGG | 0.541676 | 7.2:+12124821 | None:intergenic |
TAAATGAGACATTACCAAGA+TGG | 0.541735 | 7.2:+12125463 | None:intergenic |
AATATTGGCAGAAACAATGC+TGG | 0.547510 | 7.2:-12125546 | MS.gene061893:intron |
TGAAGTTGTCCACGAATGAT+CGG | 0.551458 | 7.2:+12126210 | None:intergenic |
TTACACCTTTCAAGCTTGGG+TGG | 0.554418 | 7.2:+12123597 | None:intergenic |
CCCCTTCAAACTCTCAGAGG+AGG | 0.559987 | 7.2:-12125511 | MS.gene061893:CDS |
AACCTTACCGCAATTATCAC+AGG | 0.568859 | 7.2:-12130778 | MS.gene061893:intron |
GAAGCTGATCCAAACCCACT+TGG | 0.575613 | 7.2:+12130838 | None:intergenic |
AAGAGTGTTGGCTCTTAGGA+AGG | 0.576770 | 7.2:-12126357 | MS.gene061893:CDS |
CCCTTCAAACTCTCAGAGGA+GGG | 0.579093 | 7.2:-12125510 | MS.gene061893:CDS |
GGAAAACAAATGTGCACGAG+TGG | 0.584665 | 7.2:-12126270 | MS.gene061893:CDS |
CAAGCTTGAAAGGTGTAACT+GGG | 0.589171 | 7.2:-12123592 | MS.gene061893:CDS |
ATTAATGCAGGAGGAGCAAG+TGG | 0.593577 | 7.2:-12126398 | MS.gene061893:intron |
GAGGAGTCATTATCACTCCT+GGG | 0.595234 | 7.2:+12124526 | None:intergenic |
GTGTAATATCGTTGATAACA+GGG | 0.598198 | 7.2:-12130870 | MS.gene061893:CDS |
TTCTTGCAGCAATGATAACA+TGG | 0.603077 | 7.2:+12126333 | None:intergenic |
ACTGCAGAGCAGGTTACTGA+AGG | 0.606028 | 7.2:-12130814 | MS.gene061893:CDS |
CATATGGAAGAACGTTCCAC+AGG | 0.606700 | 7.2:-12123781 | MS.gene061893:intron |
CACATTTGTCAACAGGAAGA+GGG | 0.607675 | 7.2:-12124576 | MS.gene061893:intron |
TACCTGTGATAATTGCGGTA+AGG | 0.607899 | 7.2:+12130776 | None:intergenic |
GTTGGAGACAACAAGAGTGT+TGG | 0.608274 | 7.2:-12126369 | MS.gene061893:CDS |
ACAAACATTAAGATGTTGAG+AGG | 0.608894 | 7.2:+12126173 | None:intergenic |
GGACAGACTTTGTTGAGCAT+AGG | 0.619279 | 7.2:+12126231 | None:intergenic |
ACAGGGATGGCTGGTCCAAG+TGG | 0.620606 | 7.2:-12130853 | MS.gene061893:CDS |
TAAGAAGAATATCTCATGAG+AGG | 0.620624 | 7.2:+12124507 | None:intergenic |
AACACTACCTGTGATAATTG+CGG | 0.627482 | 7.2:+12130771 | None:intergenic |
CTGCCCCTTCAAACTCTCAG+AGG | 0.632914 | 7.2:-12125514 | MS.gene061893:CDS |
GAGTGCAACATAACATGTCG+TGG | 0.635678 | 7.2:+12123619 | None:intergenic |
AATATCGTTGATAACAGGGA+TGG | 0.646000 | 7.2:-12130866 | MS.gene061893:CDS |
CAGGGATGGCTGGTCCAAGT+GGG | 0.650176 | 7.2:-12130852 | MS.gene061893:CDS |
CCTCCTCTGAGAGTTTGAAG+GGG | 0.662584 | 7.2:+12125511 | None:intergenic |
AAGAAACATTGAATCTGCAG+AGG | 0.666255 | 7.2:-12126315 | MS.gene061893:CDS |
ACAGCCAACTCTGTCCACCC+AGG | 0.685876 | 7.2:-12124543 | MS.gene061893:CDS |
AAGCAACTGGAATAGAGGGG+AGG | 0.690942 | 7.2:-12125043 | MS.gene061893:CDS |
CAAAAGCAACTGGAATAGAG+GGG | 0.709374 | 7.2:-12125046 | MS.gene061893:CDS |
GAGTCATTATCACTCCTGGG+TGG | 0.734865 | 7.2:+12124529 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 12123475 | 12130899 | 12123475 | ID=MS.gene061893 |
chr7.2 | mRNA | 12123475 | 12130899 | 12123475 | ID=MS.gene061893.t1;Parent=MS.gene061893 |
chr7.2 | exon | 12130779 | 12130899 | 12130779 | ID=MS.gene061893.t1.exon1;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12130779 | 12130899 | 12130779 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12126179 | 12126410 | 12126179 | ID=MS.gene061893.t1.exon2;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12126179 | 12126410 | 12126179 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12125478 | 12125557 | 12125478 | ID=MS.gene061893.t1.exon3;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12125478 | 12125557 | 12125478 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12124960 | 12125116 | 12124960 | ID=MS.gene061893.t1.exon4;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12124960 | 12125116 | 12124960 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12124782 | 12124860 | 12124782 | ID=MS.gene061893.t1.exon5;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12124782 | 12124860 | 12124782 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12124499 | 12124583 | 12124499 | ID=MS.gene061893.t1.exon6;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12124499 | 12124583 | 12124499 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12123782 | 12123828 | 12123782 | ID=MS.gene061893.t1.exon7;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12123782 | 12123828 | 12123782 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
chr7.2 | exon | 12123475 | 12123648 | 12123475 | ID=MS.gene061893.t1.exon8;Parent=MS.gene061893.t1 |
chr7.2 | CDS | 12123475 | 12123648 | 12123475 | ID=cds.MS.gene061893.t1;Parent=MS.gene061893.t1 |
Gene Sequence |
Protein sequence |