Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037994.t1 | XP_024635743.1 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 2.30E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037994.t1 | Q6RVV4 | 58.4 | 305 | 127 | 0 | 13 | 317 | 9 | 313 | 7.3e-98 | 358.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037994.t1 | G7ZZL2 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 1.6e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037994.t1 | MTR_1g068970 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 661 |
| MS.gene037994.t1 | MTR_7g099850 | 83.333 | 324 | 53 | 1 | 1 | 323 | 1 | 324 | 0.0 | 576 |
| MS.gene037994.t1 | MTR_1g068970 | 98.828 | 256 | 3 | 0 | 68 | 323 | 1 | 256 | 0.0 | 531 |
| MS.gene037994.t1 | MTR_1g100395 | 58.689 | 305 | 126 | 0 | 13 | 317 | 8 | 312 | 1.01e-129 | 372 |
| MS.gene037994.t1 | MTR_1g100305 | 58.033 | 305 | 128 | 0 | 13 | 317 | 8 | 312 | 1.46e-129 | 372 |
| MS.gene037994.t1 | MTR_8g098415 | 57.097 | 310 | 133 | 0 | 10 | 319 | 5 | 314 | 2.50e-128 | 369 |
| MS.gene037994.t1 | MTR_1g100335 | 58.689 | 305 | 126 | 0 | 13 | 317 | 8 | 312 | 4.67e-128 | 368 |
| MS.gene037994.t1 | MTR_1g100315 | 58.689 | 305 | 126 | 0 | 13 | 317 | 8 | 312 | 7.07e-128 | 368 |
| MS.gene037994.t1 | MTR_8g098415 | 56.818 | 308 | 133 | 0 | 10 | 317 | 5 | 312 | 7.70e-128 | 368 |
| MS.gene037994.t1 | MTR_6g053550 | 56.352 | 307 | 131 | 1 | 14 | 317 | 17 | 323 | 5.40e-120 | 348 |
| MS.gene037994.t1 | MTR_1g100335 | 60.000 | 250 | 100 | 0 | 13 | 262 | 8 | 257 | 9.71e-106 | 310 |
| MS.gene037994.t1 | MTR_1g100335 | 62.025 | 237 | 90 | 0 | 13 | 249 | 8 | 244 | 3.62e-104 | 306 |
| MS.gene037994.t1 | MTR_3g077410 | 48.137 | 322 | 163 | 2 | 1 | 318 | 1 | 322 | 1.18e-102 | 304 |
| MS.gene037994.t1 | MTR_8g098415 | 55.253 | 257 | 115 | 0 | 63 | 319 | 1 | 257 | 7.13e-100 | 295 |
| MS.gene037994.t1 | MTR_8g099995 | 48.788 | 330 | 159 | 5 | 1 | 323 | 1 | 327 | 8.39e-99 | 295 |
| MS.gene037994.t1 | MTR_4g105310 | 47.619 | 315 | 161 | 2 | 8 | 318 | 19 | 333 | 9.73e-98 | 292 |
| MS.gene037994.t1 | MTR_6g053600 | 54.962 | 262 | 115 | 1 | 15 | 273 | 4 | 265 | 1.47e-93 | 280 |
| MS.gene037994.t1 | MTR_8g098415 | 60.930 | 215 | 84 | 0 | 10 | 224 | 5 | 219 | 7.04e-91 | 270 |
| MS.gene037994.t1 | MTR_4g105310 | 49.593 | 246 | 120 | 2 | 8 | 249 | 19 | 264 | 3.81e-77 | 237 |
| MS.gene037994.t1 | MTR_2g079710 | 33.758 | 314 | 171 | 12 | 36 | 317 | 88 | 396 | 3.05e-27 | 110 |
| MS.gene037994.t1 | MTR_6g081020 | 31.128 | 257 | 161 | 7 | 33 | 280 | 60 | 309 | 3.97e-24 | 101 |
| MS.gene037994.t1 | MTR_6g041980 | 28.269 | 283 | 184 | 7 | 38 | 320 | 70 | 333 | 1.73e-22 | 96.7 |
| MS.gene037994.t1 | MTR_3g009190 | 27.333 | 300 | 194 | 9 | 37 | 318 | 65 | 358 | 1.50e-20 | 91.3 |
| MS.gene037994.t1 | MTR_3g009190 | 26.667 | 300 | 196 | 8 | 37 | 318 | 83 | 376 | 1.68e-20 | 91.3 |
| MS.gene037994.t1 | MTR_6g453040 | 27.333 | 300 | 194 | 9 | 37 | 318 | 43 | 336 | 1.10e-19 | 88.6 |
| MS.gene037994.t1 | MTR_3g091070 | 26.821 | 302 | 175 | 11 | 37 | 318 | 43 | 318 | 1.72e-18 | 85.1 |
| MS.gene037994.t1 | MTR_3g009190 | 26.756 | 299 | 195 | 9 | 38 | 318 | 65 | 357 | 4.35e-18 | 84.3 |
| MS.gene037994.t1 | MTR_8g022500 | 39.823 | 113 | 43 | 1 | 39 | 151 | 431 | 518 | 6.44e-16 | 78.6 |
| MS.gene037994.t1 | MTR_1g100345 | 50.000 | 66 | 33 | 0 | 38 | 103 | 4 | 69 | 1.56e-14 | 68.6 |
| MS.gene037994.t1 | MTR_6g041980 | 31.655 | 139 | 91 | 1 | 37 | 175 | 69 | 203 | 1.85e-14 | 72.8 |
| MS.gene037994.t1 | MTR_7g076660 | 26.667 | 285 | 163 | 9 | 37 | 289 | 10 | 280 | 4.46e-13 | 68.9 |
| MS.gene037994.t1 | MTR_6g453040 | 27.500 | 200 | 130 | 5 | 37 | 225 | 65 | 260 | 5.04e-13 | 68.9 |
| MS.gene037994.t1 | MTR_7g076660 | 27.018 | 285 | 162 | 9 | 37 | 289 | 9 | 279 | 5.24e-13 | 68.6 |
| MS.gene037994.t1 | MTR_6g453040 | 28.378 | 148 | 96 | 3 | 37 | 178 | 65 | 208 | 2.45e-11 | 63.5 |
| MS.gene037994.t1 | MTR_7g076655 | 26.642 | 274 | 156 | 7 | 37 | 278 | 9 | 269 | 3.68e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037994.t1 | AT5G02540 | 70.093 | 321 | 96 | 0 | 2 | 322 | 1 | 321 | 1.41e-167 | 469 |
| MS.gene037994.t1 | AT2G37540 | 67.913 | 321 | 103 | 0 | 2 | 322 | 1 | 321 | 3.11e-167 | 468 |
| MS.gene037994.t1 | AT4G23430 | 56.230 | 313 | 136 | 1 | 10 | 321 | 5 | 317 | 9.10e-129 | 370 |
| MS.gene037994.t1 | AT2G37540 | 68.000 | 250 | 80 | 0 | 2 | 251 | 1 | 250 | 3.44e-128 | 367 |
| MS.gene037994.t1 | AT4G23420 | 56.592 | 311 | 134 | 1 | 10 | 319 | 5 | 315 | 6.10e-128 | 368 |
| MS.gene037994.t1 | AT4G23420 | 56.592 | 311 | 134 | 1 | 10 | 319 | 5 | 315 | 6.10e-128 | 368 |
| MS.gene037994.t1 | AT4G23420 | 56.863 | 306 | 131 | 1 | 15 | 319 | 27 | 332 | 8.69e-127 | 366 |
| MS.gene037994.t1 | AT4G11410 | 56.579 | 304 | 132 | 0 | 13 | 316 | 8 | 311 | 1.91e-126 | 364 |
| MS.gene037994.t1 | AT4G23430 | 55.911 | 313 | 135 | 2 | 10 | 321 | 5 | 315 | 6.72e-126 | 363 |
| MS.gene037994.t1 | AT4G23430 | 53.355 | 313 | 135 | 2 | 10 | 321 | 5 | 307 | 6.79e-119 | 345 |
| MS.gene037994.t1 | AT4G23430 | 53.035 | 313 | 134 | 3 | 10 | 321 | 5 | 305 | 5.88e-116 | 337 |
| MS.gene037994.t1 | AT4G11410 | 58.103 | 253 | 105 | 1 | 13 | 265 | 8 | 259 | 5.86e-104 | 305 |
| MS.gene037994.t1 | AT4G23420 | 56.589 | 258 | 111 | 1 | 10 | 266 | 5 | 262 | 9.50e-104 | 305 |
| MS.gene037994.t1 | AT4G24050 | 50.473 | 317 | 154 | 2 | 10 | 323 | 10 | 326 | 3.58e-103 | 306 |
| MS.gene037994.t1 | AT4G23420 | 58.130 | 246 | 101 | 1 | 10 | 253 | 5 | 250 | 1.82e-101 | 299 |
| MS.gene037994.t1 | AT5G50130 | 48.137 | 322 | 163 | 3 | 1 | 318 | 1 | 322 | 3.29e-97 | 291 |
| MS.gene037994.t1 | AT1G64590 | 48.684 | 304 | 145 | 3 | 22 | 318 | 22 | 321 | 4.88e-85 | 259 |
| MS.gene037994.t1 | AT5G50130 | 47.331 | 281 | 147 | 1 | 39 | 318 | 8 | 288 | 2.24e-84 | 257 |
| MS.gene037994.t1 | AT5G50130 | 47.163 | 282 | 147 | 2 | 39 | 318 | 8 | 289 | 6.55e-83 | 253 |
| MS.gene037994.t1 | AT4G24050 | 49.813 | 267 | 129 | 3 | 10 | 273 | 10 | 274 | 2.36e-81 | 248 |
| MS.gene037994.t1 | AT5G50130 | 47.292 | 277 | 142 | 3 | 1 | 273 | 1 | 277 | 4.34e-81 | 249 |
| MS.gene037994.t1 | AT5G50130 | 49.035 | 259 | 129 | 2 | 1 | 256 | 1 | 259 | 3.41e-80 | 244 |
| MS.gene037994.t1 | AT5G50130 | 47.122 | 278 | 142 | 4 | 1 | 273 | 1 | 278 | 1.43e-79 | 245 |
| MS.gene037994.t1 | AT5G50130 | 48.846 | 260 | 129 | 3 | 1 | 256 | 1 | 260 | 1.04e-78 | 241 |
| MS.gene037994.t1 | AT5G50130 | 45.992 | 237 | 126 | 2 | 39 | 273 | 8 | 244 | 6.80e-67 | 212 |
| MS.gene037994.t1 | AT5G50130 | 45.798 | 238 | 126 | 3 | 39 | 273 | 8 | 245 | 2.22e-65 | 208 |
| MS.gene037994.t1 | AT1G03630 | 34.810 | 316 | 164 | 13 | 36 | 317 | 89 | 396 | 4.06e-30 | 118 |
| MS.gene037994.t1 | AT1G03630 | 34.810 | 316 | 164 | 13 | 36 | 317 | 91 | 398 | 4.53e-30 | 118 |
| MS.gene037994.t1 | AT5G54190 | 32.797 | 311 | 174 | 11 | 38 | 317 | 96 | 402 | 5.86e-30 | 118 |
| MS.gene037994.t1 | AT4G27440 | 32.934 | 334 | 185 | 12 | 19 | 317 | 69 | 398 | 8.55e-28 | 112 |
| MS.gene037994.t1 | AT4G27440 | 32.934 | 334 | 185 | 12 | 19 | 317 | 69 | 398 | 8.55e-28 | 112 |
| MS.gene037994.t1 | AT4G09750 | 29.730 | 259 | 164 | 6 | 38 | 293 | 47 | 290 | 2.63e-26 | 106 |
| MS.gene037994.t1 | AT4G27760 | 29.605 | 304 | 185 | 7 | 34 | 317 | 57 | 351 | 3.01e-26 | 107 |
| MS.gene037994.t1 | AT5G53090 | 28.571 | 301 | 192 | 5 | 34 | 317 | 56 | 350 | 3.48e-22 | 96.3 |
| MS.gene037994.t1 | AT5G54190 | 31.228 | 285 | 162 | 10 | 63 | 317 | 1 | 281 | 6.89e-22 | 94.0 |
| MS.gene037994.t1 | AT5G04070 | 26.797 | 306 | 196 | 9 | 37 | 323 | 61 | 357 | 2.03e-21 | 93.6 |
| MS.gene037994.t1 | AT5G15940 | 26.994 | 326 | 208 | 10 | 17 | 320 | 41 | 358 | 7.83e-21 | 92.0 |
| MS.gene037994.t1 | AT5G15940 | 26.994 | 326 | 208 | 10 | 17 | 320 | 41 | 358 | 7.83e-21 | 92.0 |
| MS.gene037994.t1 | AT5G15940 | 26.994 | 326 | 208 | 10 | 17 | 320 | 40 | 357 | 8.46e-21 | 92.0 |
| MS.gene037994.t1 | AT5G53100 | 30.744 | 309 | 180 | 11 | 33 | 317 | 43 | 341 | 9.41e-20 | 89.0 |
| MS.gene037994.t1 | AT5G15940 | 28.862 | 246 | 152 | 7 | 17 | 245 | 41 | 280 | 5.36e-19 | 86.3 |
| MS.gene037994.t1 | AT5G61830 | 28.053 | 303 | 144 | 12 | 37 | 293 | 39 | 313 | 4.84e-13 | 69.3 |
| MS.gene037994.t1 | AT5G61830 | 28.053 | 303 | 144 | 12 | 37 | 293 | 39 | 313 | 4.84e-13 | 69.3 |
Find 61 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATATCAATGATCAAAT+TGG | 0.192674 | 1.1:-50409992 | MS.gene037994:CDS |
| CCAAGCTTGAAAGGGGTAAC+TGG | 0.269808 | 1.1:-50408884 | MS.gene037994:CDS |
| TTTGCGTCAAATGGACTCTT+AGG | 0.333139 | 1.1:-50408821 | MS.gene037994:CDS |
| TACTCTGACAAGAAGGCTTA+TGG | 0.335582 | 1.1:-50409878 | MS.gene037994:CDS |
| CCAGTTACCCCTTTCAAGCT+TGG | 0.348372 | 1.1:+50408884 | None:intergenic |
| ATGGCTGGACCAAGTGGATT+TGG | 0.358790 | 1.1:-50411871 | MS.gene037994:CDS |
| CAATTCCATCTTGTGTTAGT+TGG | 0.380080 | 1.1:+50410283 | None:intergenic |
| GCAGGAGGAGCAAGTGGTAT+AGG | 0.393987 | 1.1:-50410816 | MS.gene037994:intron |
| GACTCTTAGGAAGAAAACTT+TGG | 0.399753 | 1.1:-50408808 | MS.gene037994:CDS |
| CAAGTAGAAGGTTTGTCAAA+AGG | 0.414777 | 1.1:+50410116 | None:intergenic |
| CTCTTCATCCAAGCTTGAAA+GGG | 0.423486 | 1.1:-50408892 | MS.gene037994:CDS |
| ACTCTTAGGAAGAAAACTTT+GGG | 0.424071 | 1.1:-50408807 | MS.gene037994:CDS |
| CCAAGTGCATTTGCGTCAAA+TGG | 0.424836 | 1.1:-50408830 | MS.gene037994:CDS |
| TGAGCTTTCTCGTCGCTTGA+AGG | 0.425790 | 1.1:-50409822 | MS.gene037994:intron |
| TCGTTGGTCACAGGCATGGC+TGG | 0.432678 | 1.1:-50411886 | MS.gene037994:CDS |
| ATGTAGTATGTTGGCTAACT+TGG | 0.439546 | 1.1:+50409850 | None:intergenic |
| CGCAAAAGCCACTGGAATTG+AGG | 0.440184 | 1.1:-50410077 | MS.gene037994:CDS |
| AAAGAAGAGTGTCTCATAAG+AGG | 0.446043 | 1.1:+50409354 | None:intergenic |
| CATTGTTGTTTATAGGAAGA+AGG | 0.448332 | 1.1:-50409423 | MS.gene037994:intron |
| AGAGGAGTCATTATTACTCC+TGG | 0.451331 | 1.1:+50409372 | None:intergenic |
| CCATTTGACGCAAATGCACT+TGG | 0.458408 | 1.1:+50408830 | None:intergenic |
| ATAATATCAATGATCAAATT+GGG | 0.478493 | 1.1:-50409991 | MS.gene037994:intron |
| AGGAGCAAGTGGTATAGGCT+TGG | 0.478994 | 1.1:-50410811 | MS.gene037994:CDS |
| CCATCTTGTGTTAGTTGGAA+GGG | 0.480813 | 1.1:+50410288 | None:intergenic |
| CTCATTTGCATGTAGTATGT+TGG | 0.487271 | 1.1:+50409841 | None:intergenic |
| GCTCTTCATCCAAGCTTGAA+AGG | 0.487681 | 1.1:-50408893 | MS.gene037994:CDS |
| TCCATCTTGTGTTAGTTGGA+AGG | 0.500774 | 1.1:+50410287 | None:intergenic |
| CTTGGAGACAGCACGAGTCT+TGG | 0.504599 | 1.1:-50410793 | MS.gene037994:CDS |
| CAGTTTGCAACAAATCATCT+TGG | 0.507918 | 1.1:-50410255 | MS.gene037994:intron |
| TACTCCTGGGTGTACTGAGT+TGG | 0.511760 | 1.1:+50409386 | None:intergenic |
| AAACAATCCGCAAAAGCCAC+TGG | 0.513469 | 1.1:-50410085 | MS.gene037994:CDS |
| GCAAAAGCCACTGGAATTGA+GGG | 0.513952 | 1.1:-50410076 | MS.gene037994:CDS |
| CATCATCGCCGCAAGAAACA+TGG | 0.516344 | 1.1:-50410751 | MS.gene037994:CDS |
| TTTCAGTTACTCTGACAAGA+AGG | 0.517957 | 1.1:-50409885 | MS.gene037994:intron |
| TTTCTCGTTGGTCACAGGCA+TGG | 0.523160 | 1.1:-50411890 | MS.gene037994:CDS |
| CAAGCTTGAAAGGGGTAACT+GGG | 0.526253 | 1.1:-50408883 | MS.gene037994:CDS |
| CATACCTACACTTATGAAGA+AGG | 0.526398 | 1.1:-50410025 | MS.gene037994:CDS |
| TTATGAAGAAGGCATTCGAT+TGG | 0.541423 | 1.1:-50410014 | MS.gene037994:CDS |
| CATCTTGTGTTAGTTGGAAG+GGG | 0.544361 | 1.1:+50410289 | None:intergenic |
| TTCTCTAGAATCAAAATGGT+GGG | 0.548364 | 1.1:-50411916 | None:intergenic |
| AATCTCACTGCAATTATCAC+AGG | 0.550167 | 1.1:-50411802 | MS.gene037994:intron |
| TGCAGACTCCATGTTTCTTG+CGG | 0.551159 | 1.1:+50410743 | None:intergenic |
| CCCTTCCAACTAACACAAGA+TGG | 0.556997 | 1.1:-50410288 | MS.gene037994:CDS |
| ACGAGTCTTGGCTCTTCGAA+AGG | 0.559836 | 1.1:-50410781 | MS.gene037994:CDS |
| AACTTGTTCAGCTGTTGTAG+AGG | 0.569993 | 1.1:+50411846 | None:intergenic |
| GAGGAGTCATTATTACTCCT+GGG | 0.575669 | 1.1:+50409373 | None:intergenic |
| GGACAACAAGTCTGCTCGAG+TGG | 0.588369 | 1.1:-50410694 | MS.gene037994:CDS |
| GATTCTACCCTCAATTCCAG+TGG | 0.595130 | 1.1:+50410069 | None:intergenic |
| ACAAATGCAGGAGGAGCAAG+TGG | 0.598604 | 1.1:-50410822 | MS.gene037994:intron |
| CATATGGAAGAATGTCCCAC+AGG | 0.604912 | 1.1:-50409180 | MS.gene037994:intron |
| AAGAAACATGGAGTCTGCAA+AGG | 0.621142 | 1.1:-50410739 | MS.gene037994:CDS |
| ACAGGCATGGCTGGACCAAG+TGG | 0.621510 | 1.1:-50411877 | MS.gene037994:CDS |
| AGCTAAACAAATTATACTAG+AGG | 0.622644 | 1.1:-50410715 | MS.gene037994:CDS |
| ACAGCTGAACAAGTTACTGA+AGG | 0.633665 | 1.1:-50411838 | MS.gene037994:CDS |
| TCTTCATCCAAGCTTGAAAG+GGG | 0.636952 | 1.1:-50408891 | MS.gene037994:CDS |
| TGAGAGGAAGATCGAGAGCG+AGG | 0.641279 | 1.1:+50410613 | None:intergenic |
| AATGCCTTCTTCATAAGTGT+AGG | 0.646281 | 1.1:+50410021 | None:intergenic |
| ACATACATTAAGATGTTGAG+AGG | 0.647403 | 1.1:+50410597 | None:intergenic |
| GTAGAGGATCCAAATCCACT+TGG | 0.663839 | 1.1:+50411862 | None:intergenic |
| TAACAGACTTCACTGAACAA+AGG | 0.665475 | 1.1:+50410655 | None:intergenic |
| ACAGCCAACTCAGTACACCC+AGG | 0.731735 | 1.1:-50409390 | MS.gene037994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATATTTTTTTTTTTA+AGG | - | chr1.1:50409540-50409559 | MS.gene037994:intron | 0.0% |
| !! | AAAAATTAAAACAACAAATA+TGG | + | chr1.1:50411711-50411730 | None:intergenic | 10.0% |
| !!! | ATTTTTAAAAATAATGAGAA+AGG | - | chr1.1:50410150-50410169 | MS.gene037994:intron | 10.0% |
| !!! | TACTATATAGTTTTAAAATA+CGG | + | chr1.1:50410122-50410141 | None:intergenic | 10.0% |
| !! | ACTTAGACATATAATAAATA+AGG | + | chr1.1:50411415-50411434 | None:intergenic | 15.0% |
| !! | ATAATATCAATGATCAAATT+GGG | - | chr1.1:50410676-50410695 | MS.gene037994:CDS | 15.0% |
| !! | ATACTATCAAAATATACTAT+TGG | - | chr1.1:50410910-50410929 | MS.gene037994:intron | 15.0% |
| !! | CATTAATTAACTAATACTAA+AGG | - | chr1.1:50410182-50410201 | MS.gene037994:intron | 15.0% |
| !! | CTAATGATTATAATTCTTAA+CGG | - | chr1.1:50409486-50409505 | MS.gene037994:intron | 15.0% |
| !! | CTATTGTAATAAATAAATCT+TGG | - | chr1.1:50410958-50410977 | MS.gene037994:intron | 15.0% |
| !! | GAAAAATTTATGGAAATATT+GGG | + | chr1.1:50410766-50410785 | None:intergenic | 15.0% |
| !! | TGAAAAATTTATGGAAATAT+TGG | + | chr1.1:50410767-50410786 | None:intergenic | 15.0% |
| !!! | TTAAGCAATGAATTTTTTTT+AGG | + | chr1.1:50409213-50409232 | None:intergenic | 15.0% |
| !!! | TTGTTAATTTTAAAATTGCA+GGG | - | chr1.1:50411729-50411748 | MS.gene037994:intron | 15.0% |
| !!! | TTTGTTAATTTTAAAATTGC+AGG | - | chr1.1:50411728-50411747 | MS.gene037994:intron | 15.0% |
| !! | AAAGGTGATTAAAACTATTT+CGG | - | chr1.1:50410200-50410219 | MS.gene037994:intron | 20.0% |
| !! | AGAACAAATAAAACATGATT+TGG | + | chr1.1:50409758-50409777 | None:intergenic | 20.0% |
| !! | ATTCTGTCAAAAATTTATGA+GGG | - | chr1.1:50409647-50409666 | MS.gene037994:intron | 20.0% |
| !! | GAATTAAAATAAATACCTGT+GGG | + | chr1.1:50411505-50411524 | None:intergenic | 20.0% |
| !! | GATAATATCAATGATCAAAT+TGG | - | chr1.1:50410675-50410694 | MS.gene037994:CDS | 20.0% |
| !! | TAAAACATTGTAGAATAAGA+AGG | + | chr1.1:50411527-50411546 | None:intergenic | 20.0% |
| !! | TATTCTGTCAAAAATTTATG+AGG | - | chr1.1:50409646-50409665 | MS.gene037994:intron | 20.0% |
| !! | TCTTTATTATACTGTATAGT+TGG | - | chr1.1:50409576-50409595 | MS.gene037994:intron | 20.0% |
| !! | TTAGTTATATATATGCACAA+AGG | + | chr1.1:50409314-50409333 | None:intergenic | 20.0% |
| !! | TTCTATAATGTATTTGTCTA+AGG | + | chr1.1:50410265-50410284 | None:intergenic | 20.0% |
| !!! | AAATTGAATGAATTCCTTTT+AGG | + | chr1.1:50411057-50411076 | None:intergenic | 20.0% |
| !!! | AATCAAGACATGTTTTATTA+TGG | - | chr1.1:50409333-50409352 | MS.gene037994:intron | 20.0% |
| !!! | CATAAGAAACTTTTTTTTTG+AGG | - | chr1.1:50411179-50411198 | MS.gene037994:intron | 20.0% |
| !!! | TAATTGGTTGTATTTTTTTC+AGG | - | chr1.1:50410522-50410541 | MS.gene037994:intron | 20.0% |
| !!! | TGGTTAAAGTATTATTTAGA+AGG | - | chr1.1:50409596-50409615 | MS.gene037994:intron | 20.0% |
| !!! | TGTTATTTAATGCACAAATT+TGG | + | chr1.1:50411208-50411227 | None:intergenic | 20.0% |
| !!! | TTGGGAAATTTTTATTGTAA+AGG | + | chr1.1:50410748-50410767 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTTCTTGATTAG+TGG | - | chr1.1:50409765-50409784 | MS.gene037994:intron | 20.0% |
| !!! | TTTTTGACATTGTTGTTTAT+AGG | - | chr1.1:50411237-50411256 | MS.gene037994:intron | 20.0% |
| ! | AAAACAAACAAAAGAGGAAA+AGG | + | chr1.1:50409053-50409072 | None:intergenic | 25.0% |
| ! | AAAAGTAAAGGAACAAAAGA+AGG | + | chr1.1:50409013-50409032 | None:intergenic | 25.0% |
| ! | AGCTAAACAAATTATACTAG+AGG | - | chr1.1:50409952-50409971 | MS.gene037994:intron | 25.0% |
| ! | ATCTATATCTATGACTTTAG+AGG | - | chr1.1:50409430-50409449 | MS.gene037994:intron | 25.0% |
| ! | CAATTCTAATTCCATATTCT+TGG | + | chr1.1:50408962-50408981 | None:intergenic | 25.0% |
| ! | CAGAGTAACTGAAAAATTTA+TGG | + | chr1.1:50410776-50410795 | None:intergenic | 25.0% |
| ! | GGAATTAAAATAAATACCTG+TGG | + | chr1.1:50411506-50411525 | None:intergenic | 25.0% |
| ! | TACTAATACTAAACAAATGC+AGG | - | chr1.1:50409833-50409852 | MS.gene037994:CDS | 25.0% |
| ! | TAGCGACTTAATAACATAAT+TGG | - | chr1.1:50410317-50410336 | MS.gene037994:intron | 25.0% |
| ! | TATGTTATTAAGTCGCTATT+TGG | + | chr1.1:50410315-50410334 | None:intergenic | 25.0% |
| ! | TGACAGAATATATAGTTAGA+TGG | + | chr1.1:50409636-50409655 | None:intergenic | 25.0% |
| ! | TGTGCATATCATCATTTATT+TGG | - | chr1.1:50410461-50410480 | MS.gene037994:intron | 25.0% |
| ! | TTCTGTCAAAAATTTATGAG+GGG | - | chr1.1:50409648-50409667 | MS.gene037994:intron | 25.0% |
| ! | TTGAATGTGTTTGAATATTG+AGG | - | chr1.1:50409727-50409746 | MS.gene037994:intron | 25.0% |
| !! | AGATGTTCACATTTTACATA+TGG | - | chr1.1:50411471-50411490 | MS.gene037994:intron | 25.0% |
| !! | ATCATTTTCATGTTCAAACA+AGG | + | chr1.1:50408922-50408941 | None:intergenic | 25.0% |
| !!! | TTGTTTTAACTCTTGTTGTA+CGG | + | chr1.1:50411368-50411387 | None:intergenic | 25.0% |
| !!! | TTTCCTCTTTTGTTTGTTTT+GGG | - | chr1.1:50409053-50409072 | MS.gene037994:intron | 25.0% |
| !!! | TTTTCCTCTTTTGTTTGTTT+TGG | - | chr1.1:50409052-50409071 | MS.gene037994:intron | 25.0% |
| !!! | TTTTGTGTATTCTAGCTAAT+TGG | - | chr1.1:50410506-50410525 | MS.gene037994:intron | 25.0% |
| AAACATTAAGAAAGGAAGCA+GGG | - | chr1.1:50409287-50409306 | MS.gene037994:intron | 30.0% | |
| ACAAGGTCAATTAAAAACGA+AGG | + | chr1.1:50408905-50408924 | None:intergenic | 30.0% | |
| ACATACATTAAGATGTTGAG+AGG | + | chr1.1:50410073-50410092 | None:intergenic | 30.0% | |
| ACGGTTAAAATGAAAAGAAG+AGG | + | chr1.1:50410103-50410122 | None:intergenic | 30.0% | |
| ACTCTTAGGAAGAAAACTTT+GGG | - | chr1.1:50411860-50411879 | MS.gene037994:CDS | 30.0% | |
| ATAGTGCCAAACATTAAGAA+AGG | - | chr1.1:50409279-50409298 | MS.gene037994:intron | 30.0% | |
| TAAAACATCCACTGTGTATA+TGG | + | chr1.1:50409138-50409157 | None:intergenic | 30.0% | |
| TAACATTTGCAAACTTTCAC+CGG | + | chr1.1:50411608-50411627 | None:intergenic | 30.0% | |
| TAATACTAAACAAATGCAGG+AGG | - | chr1.1:50409836-50409855 | MS.gene037994:CDS | 30.0% | |
| ! | CCTACTAGTATTATGTTTTG+GGG | - | chr1.1:50411018-50411037 | MS.gene037994:intron | 30.0% |
| ! | GCCTACTAGTATTATGTTTT+GGG | - | chr1.1:50411017-50411036 | MS.gene037994:intron | 30.0% |
| ! | GTTTCATTTTCTCAAGTAGA+AGG | + | chr1.1:50410566-50410585 | None:intergenic | 30.0% |
| ! | TATTTCTGACACCAAGAATA+TGG | - | chr1.1:50408948-50408967 | MS.gene037994:intron | 30.0% |
| ! | TGCCTACTAGTATTATGTTT+TGG | - | chr1.1:50411016-50411035 | MS.gene037994:intron | 30.0% |
| ! | TTGATTTTCAGAAACAATGC+TGG | - | chr1.1:50410343-50410362 | MS.gene037994:intron | 30.0% |
| !! | CATTGTTGTTTATAGGAAGA+AGG | - | chr1.1:50411244-50411263 | MS.gene037994:intron | 30.0% |
| !!! | AGAGTTTTAAATAACCGTCA+TGG | + | chr1.1:50411631-50411650 | None:intergenic | 30.0% |
| !!! | TTCCTCTTTTGTTTGTTTTG+GGG | - | chr1.1:50409054-50409073 | MS.gene037994:intron | 30.0% |
| AATCTCACTGCAATTATCAC+AGG | - | chr1.1:50408865-50408884 | MS.gene037994:CDS | 35.0% | |
| AATGCCTTCTTCATAAGTGT+AGG | + | chr1.1:50410649-50410668 | None:intergenic | 35.0% | |
| ATTGTAAAGGTAGTAGTCAC+TGG | + | chr1.1:50410735-50410754 | None:intergenic | 35.0% | |
| CAAACAAAAGAGGAAAAGGA+AGG | + | chr1.1:50409049-50409068 | None:intergenic | 35.0% | |
| CAAACATTAAGAAAGGAAGC+AGG | - | chr1.1:50409286-50409305 | MS.gene037994:intron | 35.0% | |
| CAAGTAGAAGGTTTGTCAAA+AGG | + | chr1.1:50410554-50410573 | None:intergenic | 35.0% | |
| CAATTCCATCTTGTGTTAGT+TGG | + | chr1.1:50410387-50410406 | None:intergenic | 35.0% | |
| CAGTTTGCAACAAATCATCT+TGG | - | chr1.1:50410412-50410431 | MS.gene037994:intron | 35.0% | |
| CATACCTACACTTATGAAGA+AGG | - | chr1.1:50410642-50410661 | MS.gene037994:CDS | 35.0% | |
| CCCCAAAACATAATACTAGT+AGG | + | chr1.1:50411021-50411040 | None:intergenic | 35.0% | |
| CTCATTTGCATGTAGTATGT+TGG | + | chr1.1:50410829-50410848 | None:intergenic | 35.0% | |
| CTGCTTCCTTTCTTAATGTT+TGG | + | chr1.1:50409288-50409307 | None:intergenic | 35.0% | |
| GACTCTTAGGAAGAAAACTT+TGG | - | chr1.1:50411859-50411878 | MS.gene037994:CDS | 35.0% | |
| GTTTGCAAATGTTACCATGA+CGG | - | chr1.1:50411614-50411633 | MS.gene037994:intron | 35.0% | |
| TAACAGACTTCACTGAACAA+AGG | + | chr1.1:50410015-50410034 | None:intergenic | 35.0% | |
| TACCCCAAAACAAACAAAAG+AGG | + | chr1.1:50409059-50409078 | None:intergenic | 35.0% | |
| TCATCTTGGTATGTACTATG+TGG | - | chr1.1:50410426-50410445 | MS.gene037994:intron | 35.0% | |
| TCATTTGTCCATATACACAG+TGG | - | chr1.1:50409127-50409146 | MS.gene037994:intron | 35.0% | |
| TCGAGTTTGCGATACATATA+GGG | + | chr1.1:50409692-50409711 | None:intergenic | 35.0% | |
| TTTCAGTTACTCTGACAAGA+AGG | - | chr1.1:50410782-50410801 | MS.gene037994:CDS | 35.0% | |
| ! | ATGTAGTATGTTGGCTAACT+TGG | + | chr1.1:50410820-50410839 | None:intergenic | 35.0% |
| !! | AAAGAAGAGTGTCTCATAAG+AGG | + | chr1.1:50411316-50411335 | None:intergenic | 35.0% |
| !! | TTATGAAGAAGGCATTCGAT+TGG | - | chr1.1:50410653-50410672 | MS.gene037994:CDS | 35.0% |
| AAAGAGGAAAAGGAAGGACA+AGG | + | chr1.1:50409043-50409062 | None:intergenic | 40.0% | |
| AAGAAACATGGAGTCTGCAA+AGG | - | chr1.1:50409928-50409947 | MS.gene037994:intron | 40.0% | |
| ACAGCTGAACAAGTTACTGA+AGG | - | chr1.1:50408829-50408848 | MS.gene037994:CDS | 40.0% | |
| AGAGGAGTCATTATTACTCC+TGG | + | chr1.1:50411298-50411317 | None:intergenic | 40.0% | |
| CAAGGAGTGGCAAAAAGTAA+AGG | + | chr1.1:50409025-50409044 | None:intergenic | 40.0% | |
| CATCTTGTGTTAGTTGGAAG+GGG | + | chr1.1:50410381-50410400 | None:intergenic | 40.0% | |
| CCATCTTGTGTTAGTTGGAA+GGG | + | chr1.1:50410382-50410401 | None:intergenic | 40.0% | |
| CGTGTAGTGTAGAGTTTAGA+TGG | + | chr1.1:50411086-50411105 | None:intergenic | 40.0% | |
| CTCTTCATCCAAGCTTGAAA+GGG | - | chr1.1:50411775-50411794 | MS.gene037994:intron | 40.0% | |
| GAGGAGTCATTATTACTCCT+GGG | + | chr1.1:50411297-50411316 | None:intergenic | 40.0% | |
| GTCGAGTTTGCGATACATAT+AGG | + | chr1.1:50409693-50409712 | None:intergenic | 40.0% | |
| TACTCTGACAAGAAGGCTTA+TGG | - | chr1.1:50410789-50410808 | MS.gene037994:CDS | 40.0% | |
| TATGAGGGGTCAAATAAGCA+TGG | - | chr1.1:50409662-50409681 | MS.gene037994:intron | 40.0% | |
| TCCATCTTGTGTTAGTTGGA+AGG | + | chr1.1:50410383-50410402 | None:intergenic | 40.0% | |
| TCTTCATCCAAGCTTGAAAG+GGG | - | chr1.1:50411776-50411795 | MS.gene037994:intron | 40.0% | |
| ! | AACTTGTTCAGCTGTTGTAG+AGG | + | chr1.1:50408824-50408843 | None:intergenic | 40.0% |
| ! | TTTGCGTCAAATGGACTCTT+AGG | - | chr1.1:50411846-50411865 | MS.gene037994:CDS | 40.0% |
| !!! | AGTATTATGTTTTGGGGCCA+TGG | - | chr1.1:50411024-50411043 | MS.gene037994:intron | 40.0% |
| !!! | GGTAACTGGGAAGTACTTTT+TGG | - | chr1.1:50411797-50411816 | MS.gene037994:intron | 40.0% |
| !!! | GTATTATGTTTTGGGGCCAT+GGG | - | chr1.1:50411025-50411044 | MS.gene037994:intron | 40.0% |
| !!! | GTTTGTTTTGGGGTATCTCT+CGG | - | chr1.1:50409064-50409083 | MS.gene037994:intron | 40.0% |
| AAACAATCCGCAAAAGCCAC+TGG | - | chr1.1:50410582-50410601 | MS.gene037994:intron | 45.0% | |
| CAAGCTTGAAAGGGGTAACT+GGG | - | chr1.1:50411784-50411803 | MS.gene037994:intron | 45.0% | |
| CATATGGAAGAATGTCCCAC+AGG | - | chr1.1:50411487-50411506 | MS.gene037994:intron | 45.0% | |
| CCAAGTGCATTTGCGTCAAA+TGG | - | chr1.1:50411837-50411856 | MS.gene037994:CDS | 45.0% | |
| CCATTTGACGCAAATGCACT+TGG | + | chr1.1:50411840-50411859 | None:intergenic | 45.0% | |
| CCCTTCCAACTAACACAAGA+TGG | - | chr1.1:50410379-50410398 | MS.gene037994:intron | 45.0% | |
| CCTCATACACTCTTATGTCG+CGG | + | chr1.1:50411585-50411604 | None:intergenic | 45.0% | |
| GATTCTACCCTCAATTCCAG+TGG | + | chr1.1:50410601-50410620 | None:intergenic | 45.0% | |
| GCAAAAGCCACTGGAATTGA+GGG | - | chr1.1:50410591-50410610 | MS.gene037994:intron | 45.0% | |
| GCTCTTCATCCAAGCTTGAA+AGG | - | chr1.1:50411774-50411793 | MS.gene037994:intron | 45.0% | |
| GTAGAGGATCCAAATCCACT+TGG | + | chr1.1:50408808-50408827 | None:intergenic | 45.0% | |
| TGCAGACTCCATGTTTCTTG+CGG | + | chr1.1:50409927-50409946 | None:intergenic | 45.0% | |
| ! | CTCAATTCCAGTGGCTTTTG+CGG | + | chr1.1:50410592-50410611 | None:intergenic | 45.0% |
| ! | GACATAAGAGTGTATGAGGC+CGG | - | chr1.1:50411586-50411605 | MS.gene037994:intron | 45.0% |
| ! | GGTATTTTCTCGTTGGTCAC+AGG | - | chr1.1:50408772-50408791 | MS.gene037994:CDS | 45.0% |
| ! | TCTAAGGCGTATCAACTCAG+TGG | + | chr1.1:50410249-50410268 | None:intergenic | 45.0% |
| ACAAATGCAGGAGGAGCAAG+TGG | - | chr1.1:50409845-50409864 | MS.gene037994:CDS | 50.0% | |
| AGGAGCAAGTGGTATAGGCT+TGG | - | chr1.1:50409856-50409875 | MS.gene037994:CDS | 50.0% | |
| CATCATCGCCGCAAGAAACA+TGG | - | chr1.1:50409916-50409935 | MS.gene037994:intron | 50.0% | |
| CCAAGCTTGAAAGGGGTAAC+TGG | - | chr1.1:50411783-50411802 | MS.gene037994:intron | 50.0% | |
| CCAGTTACCCCTTTCAAGCT+TGG | + | chr1.1:50411786-50411805 | None:intergenic | 50.0% | |
| CGCAAAAGCCACTGGAATTG+AGG | - | chr1.1:50410590-50410609 | MS.gene037994:intron | 50.0% | |
| GGAAAAGGAAGGACAAGGAG+TGG | + | chr1.1:50409038-50409057 | None:intergenic | 50.0% | |
| TACTCCTGGGTGTACTGAGT+TGG | + | chr1.1:50411284-50411303 | None:intergenic | 50.0% | |
| TGAGCTTTCTCGTCGCTTGA+AGG | - | chr1.1:50410845-50410864 | MS.gene037994:intron | 50.0% | |
| TTTCTCGTTGGTCACAGGCA+TGG | - | chr1.1:50408777-50408796 | MS.gene037994:CDS | 50.0% | |
| ! | ACGAGTCTTGGCTCTTCGAA+AGG | - | chr1.1:50409886-50409905 | MS.gene037994:intron | 50.0% |
| ! | ATGGCTGGACCAAGTGGATT+TGG | - | chr1.1:50408796-50408815 | MS.gene037994:CDS | 50.0% |
| ! | CCGCGACATAAGAGTGTATG+AGG | - | chr1.1:50411582-50411601 | MS.gene037994:intron | 50.0% |
| !! | TCCTTTTAGGTACGTGCCCA+TGG | + | chr1.1:50411044-50411063 | None:intergenic | 50.0% |
| ACACTCTTATGTCGCGGCTC+AGG | + | chr1.1:50411579-50411598 | None:intergenic | 55.0% | |
| ACAGCCAACTCAGTACACCC+AGG | - | chr1.1:50411277-50411296 | MS.gene037994:intron | 55.0% | |
| CTTGGAGACAGCACGAGTCT+TGG | - | chr1.1:50409874-50409893 | MS.gene037994:CDS | 55.0% | |
| GCAGGAGGAGCAAGTGGTAT+AGG | - | chr1.1:50409851-50409870 | MS.gene037994:CDS | 55.0% | |
| GCCATGGGCACGTACCTAAA+AGG | - | chr1.1:50411040-50411059 | MS.gene037994:intron | 55.0% | |
| GGACAACAAGTCTGCTCGAG+TGG | - | chr1.1:50409973-50409992 | MS.gene037994:intron | 55.0% | |
| TGAGAGGAAGATCGAGAGCG+AGG | + | chr1.1:50410057-50410076 | None:intergenic | 55.0% | |
| ACAGGCATGGCTGGACCAAG+TGG | - | chr1.1:50408790-50408809 | MS.gene037994:CDS | 60.0% | |
| TCGTTGGTCACAGGCATGGC+TGG | - | chr1.1:50408781-50408800 | MS.gene037994:CDS | 60.0% | |
| TTATGTCGCGGCTCAGGTCG+CGG | + | chr1.1:50411573-50411592 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 50408766 | 50411923 | 50408766 | ID=MS.gene037994 |
| chr1.1 | mRNA | 50408766 | 50411923 | 50408766 | ID=MS.gene037994.t1;Parent=MS.gene037994 |
| chr1.1 | exon | 50411803 | 50411923 | 50411803 | ID=MS.gene037994.t1.exon1;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50411803 | 50411923 | 50411803 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50410603 | 50410834 | 50410603 | ID=MS.gene037994.t1.exon2;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50410603 | 50410834 | 50410603 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50410256 | 50410335 | 50410256 | ID=MS.gene037994.t1.exon3;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50410256 | 50410335 | 50410256 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50409992 | 50410145 | 50409992 | ID=MS.gene037994.t1.exon4;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50409992 | 50410145 | 50409992 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50409823 | 50409901 | 50409823 | ID=MS.gene037994.t1.exon5;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50409823 | 50409901 | 50409823 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50409346 | 50409430 | 50409346 | ID=MS.gene037994.t1.exon6;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50409346 | 50409430 | 50409346 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50409181 | 50409227 | 50409181 | ID=MS.gene037994.t1.exon7;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50409181 | 50409227 | 50409181 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| chr1.1 | exon | 50408766 | 50408939 | 50408766 | ID=MS.gene037994.t1.exon8;Parent=MS.gene037994.t1 |
| chr1.1 | CDS | 50408766 | 50408939 | 50408766 | ID=cds.MS.gene037994.t1;Parent=MS.gene037994.t1 |
| Gene Sequence |
| Protein sequence |
