Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24053.t1 | XP_024635743.1 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 2.30E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24053.t1 | Q6RVV4 | 59.0 | 305 | 125 | 0 | 13 | 317 | 9 | 313 | 8.6e-99 | 361.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24053.t1 | G7ZZL2 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 1.6e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene24053 | 0.816199 | 6.26E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene24053 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene24053 | 0.822689 | 2.07E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene24053 | 0.823533 | 1.32E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene24053 | 0.807563 | 4.75E-50 | -1.69E-46 |
| MS.gene049681 | MS.gene24053 | 0.815436 | 9.26E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene24053 | 0.818722 | 1.69E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene24053 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene24053 | 0.817861 | 2.65E-52 | -1.69E-46 |
| MS.gene050971 | MS.gene24053 | 0.82591 | 3.62E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene24053 | 0.828633 | 8.07E-55 | -1.69E-46 |
| MS.gene051255 | MS.gene24053 | 0.839421 | 1.60E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene24053 | 0.828325 | 9.57E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene24053 | 0.810627 | 1.05E-50 | -1.69E-46 |
| MS.gene051877 | MS.gene24053 | 0.806652 | 7.41E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene24053 | 0.822734 | 2.02E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene24053 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene24053 | 0.834284 | 3.28E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene24053 | 0.819812 | 9.54E-53 | -1.69E-46 |
| MS.gene052999 | MS.gene24053 | 0.805524 | 1.28E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene24053 | 0.801809 | 7.56E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene24053 | 0.807504 | 4.89E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene24053 | 0.849375 | 3.37E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene24053 | 0.88983 | 1.70E-73 | -1.69E-46 |
| MS.gene054010 | MS.gene24053 | 0.860722 | 1.69E-63 | -1.69E-46 |
| MS.gene054011 | MS.gene24053 | 0.851622 | 7.87E-61 | -1.69E-46 |
| MS.gene054012 | MS.gene24053 | 0.850238 | 1.93E-60 | -1.69E-46 |
| MS.gene054013 | MS.gene24053 | 0.852731 | 3.81E-61 | -1.69E-46 |
| MS.gene054486 | MS.gene24053 | 0.839068 | 1.98E-57 | -1.69E-46 |
| MS.gene054556 | MS.gene24053 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene24053 | 0.819695 | 1.01E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene24053 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene24053 | 0.845029 | 5.24E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene24053 | 0.832933 | 7.12E-56 | -1.69E-46 |
| MS.gene055666 | MS.gene24053 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene24053 | 0.837134 | 6.22E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene24053 | 0.8444 | 7.74E-59 | -1.69E-46 |
| MS.gene056191 | MS.gene24053 | 0.888067 | 8.20E-73 | -1.69E-46 |
| MS.gene056407 | MS.gene24053 | 0.80785 | 4.13E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene24053 | 0.825093 | 5.66E-54 | -1.69E-46 |
| MS.gene056422 | MS.gene24053 | 0.805778 | 1.13E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene24053 | 0.83559 | 1.54E-56 | -1.69E-46 |
| MS.gene056514 | MS.gene24053 | 0.804307 | 2.30E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene24053 | 0.840309 | 9.40E-58 | -1.69E-46 |
| MS.gene056931 | MS.gene24053 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene056933 | MS.gene24053 | 0.812543 | 4.02E-51 | -1.69E-46 |
| MS.gene056935 | MS.gene24053 | 0.816102 | 6.57E-52 | -1.69E-46 |
| MS.gene056942 | MS.gene24053 | 0.839298 | 1.72E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene24053 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene24053 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene24053 | 0.857746 | 1.32E-62 | -1.69E-46 |
| MS.gene057823 | MS.gene24053 | 0.86159 | 9.22E-64 | -1.69E-46 |
| MS.gene057825 | MS.gene24053 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene058007 | MS.gene24053 | 0.8234 | 1.41E-53 | -1.69E-46 |
| MS.gene058075 | MS.gene24053 | 0.812923 | 3.32E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene24053 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene24053 | 0.833694 | 4.60E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene24053 | 0.826331 | 2.88E-54 | -1.69E-46 |
| MS.gene058995 | MS.gene24053 | 0.93251 | 7.64E-95 | -1.69E-46 |
| MS.gene05907 | MS.gene24053 | 0.85461 | 1.10E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene24053 | 0.852561 | 4.26E-61 | -1.69E-46 |
| MS.gene059368 | MS.gene24053 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene24053 | 0.825002 | 5.94E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene24053 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene24053 | 0.834221 | 3.40E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene24053 | 0.830343 | 3.10E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene24053 | 0.810067 | 1.39E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene24053 | 0.815836 | 7.54E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene24053 | 0.833496 | 5.16E-56 | -1.69E-46 |
| MS.gene059807 | MS.gene24053 | 0.836524 | 8.90E-57 | -1.69E-46 |
| MS.gene059876 | MS.gene24053 | 0.811858 | 5.67E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene24053 | 0.818929 | 1.52E-52 | -1.69E-46 |
| MS.gene060005 | MS.gene24053 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene24053 | 0.816557 | 5.20E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene24053 | 0.813501 | 2.48E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene24053 | 0.807821 | 4.19E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene24053 | 0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene24053 | 0.846193 | 2.53E-59 | -1.69E-46 |
| MS.gene061049 | MS.gene24053 | 0.808391 | 3.17E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene24053 | 0.802328 | 5.91E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24053.t1 | MTR_1g068970 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 661 |
| MS.gene24053.t1 | MTR_7g099850 | 83.333 | 324 | 53 | 1 | 1 | 323 | 1 | 324 | 0.0 | 575 |
| MS.gene24053.t1 | MTR_1g068970 | 99.219 | 256 | 2 | 0 | 68 | 323 | 1 | 256 | 0.0 | 533 |
| MS.gene24053.t1 | MTR_1g100395 | 58.689 | 305 | 126 | 0 | 13 | 317 | 8 | 312 | 1.38e-129 | 372 |
| MS.gene24053.t1 | MTR_1g100305 | 58.033 | 305 | 128 | 0 | 13 | 317 | 8 | 312 | 2.42e-129 | 372 |
| MS.gene24053.t1 | MTR_8g098415 | 57.097 | 310 | 133 | 0 | 10 | 319 | 5 | 314 | 4.14e-128 | 369 |
| MS.gene24053.t1 | MTR_1g100335 | 58.689 | 305 | 126 | 0 | 13 | 317 | 8 | 312 | 4.42e-128 | 368 |
| MS.gene24053.t1 | MTR_1g100315 | 58.689 | 305 | 126 | 0 | 13 | 317 | 8 | 312 | 6.70e-128 | 368 |
| MS.gene24053.t1 | MTR_8g098415 | 56.818 | 308 | 133 | 0 | 10 | 317 | 5 | 312 | 1.01e-127 | 367 |
| MS.gene24053.t1 | MTR_6g053550 | 56.352 | 307 | 131 | 1 | 14 | 317 | 17 | 323 | 7.82e-120 | 348 |
| MS.gene24053.t1 | MTR_1g100335 | 60.000 | 250 | 100 | 0 | 13 | 262 | 8 | 257 | 1.38e-105 | 310 |
| MS.gene24053.t1 | MTR_1g100335 | 62.025 | 237 | 90 | 0 | 13 | 249 | 8 | 244 | 4.86e-104 | 305 |
| MS.gene24053.t1 | MTR_3g077410 | 48.137 | 322 | 163 | 2 | 1 | 318 | 1 | 322 | 1.87e-102 | 304 |
| MS.gene24053.t1 | MTR_8g098415 | 55.642 | 257 | 114 | 0 | 63 | 319 | 1 | 257 | 1.75e-100 | 296 |
| MS.gene24053.t1 | MTR_8g099995 | 49.394 | 330 | 157 | 5 | 1 | 323 | 1 | 327 | 7.10e-100 | 297 |
| MS.gene24053.t1 | MTR_4g105310 | 47.619 | 315 | 161 | 2 | 8 | 318 | 19 | 333 | 1.47e-97 | 292 |
| MS.gene24053.t1 | MTR_6g053600 | 54.962 | 262 | 115 | 1 | 15 | 273 | 4 | 265 | 1.68e-93 | 280 |
| MS.gene24053.t1 | MTR_8g098415 | 60.930 | 215 | 84 | 0 | 10 | 224 | 5 | 219 | 1.03e-90 | 270 |
| MS.gene24053.t1 | MTR_4g105310 | 49.593 | 246 | 120 | 2 | 8 | 249 | 19 | 264 | 5.64e-77 | 236 |
| MS.gene24053.t1 | MTR_2g079710 | 33.758 | 314 | 171 | 12 | 36 | 317 | 88 | 396 | 5.61e-27 | 109 |
| MS.gene24053.t1 | MTR_6g081020 | 31.518 | 257 | 160 | 7 | 33 | 280 | 60 | 309 | 1.04e-24 | 103 |
| MS.gene24053.t1 | MTR_6g041980 | 30.070 | 286 | 175 | 8 | 38 | 320 | 70 | 333 | 6.60e-23 | 97.8 |
| MS.gene24053.t1 | MTR_3g009190 | 27.333 | 300 | 194 | 9 | 37 | 318 | 65 | 358 | 1.73e-20 | 91.3 |
| MS.gene24053.t1 | MTR_3g009190 | 26.667 | 300 | 196 | 8 | 37 | 318 | 83 | 376 | 2.00e-20 | 91.3 |
| MS.gene24053.t1 | MTR_6g453040 | 26.000 | 300 | 198 | 9 | 37 | 318 | 43 | 336 | 1.08e-19 | 88.6 |
| MS.gene24053.t1 | MTR_3g091070 | 26.490 | 302 | 176 | 11 | 37 | 318 | 43 | 318 | 3.15e-18 | 84.3 |
| MS.gene24053.t1 | MTR_3g009190 | 26.756 | 299 | 195 | 9 | 38 | 318 | 65 | 357 | 4.19e-18 | 84.3 |
| MS.gene24053.t1 | MTR_8g022500 | 38.938 | 113 | 44 | 1 | 39 | 151 | 431 | 518 | 2.69e-15 | 76.6 |
| MS.gene24053.t1 | MTR_6g041980 | 32.374 | 139 | 90 | 1 | 37 | 175 | 69 | 203 | 7.52e-15 | 73.9 |
| MS.gene24053.t1 | MTR_1g100345 | 48.485 | 66 | 34 | 0 | 38 | 103 | 4 | 69 | 5.87e-14 | 67.0 |
| MS.gene24053.t1 | MTR_6g453040 | 27.500 | 200 | 130 | 5 | 37 | 225 | 65 | 260 | 4.76e-13 | 68.9 |
| MS.gene24053.t1 | MTR_7g076660 | 25.965 | 285 | 165 | 9 | 37 | 289 | 10 | 280 | 3.11e-12 | 66.2 |
| MS.gene24053.t1 | MTR_7g076660 | 26.316 | 285 | 164 | 9 | 37 | 289 | 9 | 279 | 4.33e-12 | 65.9 |
| MS.gene24053.t1 | MTR_6g453040 | 28.378 | 148 | 96 | 3 | 37 | 178 | 65 | 208 | 2.79e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24053.t1 | AT5G02540 | 70.717 | 321 | 94 | 0 | 2 | 322 | 1 | 321 | 6.36e-169 | 473 |
| MS.gene24053.t1 | AT2G37540 | 68.536 | 321 | 101 | 0 | 2 | 322 | 1 | 321 | 1.73e-168 | 471 |
| MS.gene24053.t1 | AT2G37540 | 68.800 | 250 | 78 | 0 | 2 | 251 | 1 | 250 | 1.98e-129 | 370 |
| MS.gene24053.t1 | AT4G23430 | 56.230 | 313 | 136 | 1 | 10 | 321 | 5 | 317 | 1.20e-128 | 370 |
| MS.gene24053.t1 | AT4G23420 | 56.592 | 311 | 134 | 1 | 10 | 319 | 5 | 315 | 9.13e-128 | 368 |
| MS.gene24053.t1 | AT4G23420 | 56.592 | 311 | 134 | 1 | 10 | 319 | 5 | 315 | 9.13e-128 | 368 |
| MS.gene24053.t1 | AT4G23420 | 56.863 | 306 | 131 | 1 | 15 | 319 | 27 | 332 | 1.19e-126 | 365 |
| MS.gene24053.t1 | AT4G11410 | 56.579 | 304 | 132 | 0 | 13 | 316 | 8 | 311 | 3.71e-126 | 363 |
| MS.gene24053.t1 | AT4G23430 | 55.911 | 313 | 135 | 2 | 10 | 321 | 5 | 315 | 9.96e-126 | 363 |
| MS.gene24053.t1 | AT4G23430 | 53.355 | 313 | 135 | 2 | 10 | 321 | 5 | 307 | 1.22e-118 | 344 |
| MS.gene24053.t1 | AT4G23430 | 53.035 | 313 | 134 | 3 | 10 | 321 | 5 | 305 | 9.10e-116 | 337 |
| MS.gene24053.t1 | AT4G24050 | 51.104 | 317 | 152 | 2 | 10 | 323 | 10 | 326 | 2.86e-104 | 308 |
| MS.gene24053.t1 | AT4G11410 | 58.103 | 253 | 105 | 1 | 13 | 265 | 8 | 259 | 7.70e-104 | 305 |
| MS.gene24053.t1 | AT4G23420 | 56.589 | 258 | 111 | 1 | 10 | 266 | 5 | 262 | 1.10e-103 | 305 |
| MS.gene24053.t1 | AT4G23420 | 59.657 | 233 | 94 | 0 | 10 | 242 | 5 | 237 | 2.39e-101 | 298 |
| MS.gene24053.t1 | AT5G50130 | 48.137 | 322 | 163 | 3 | 1 | 318 | 1 | 322 | 3.58e-97 | 291 |
| MS.gene24053.t1 | AT1G64590 | 49.342 | 304 | 143 | 3 | 22 | 318 | 22 | 321 | 3.86e-86 | 262 |
| MS.gene24053.t1 | AT5G50130 | 47.331 | 281 | 147 | 1 | 39 | 318 | 8 | 288 | 3.00e-84 | 256 |
| MS.gene24053.t1 | AT5G50130 | 47.163 | 282 | 147 | 2 | 39 | 318 | 8 | 289 | 8.05e-83 | 253 |
| MS.gene24053.t1 | AT4G24050 | 50.562 | 267 | 127 | 3 | 10 | 273 | 10 | 274 | 1.56e-82 | 251 |
| MS.gene24053.t1 | AT5G50130 | 47.292 | 277 | 142 | 3 | 1 | 273 | 1 | 277 | 5.45e-81 | 249 |
| MS.gene24053.t1 | AT5G50130 | 49.035 | 259 | 129 | 2 | 1 | 256 | 1 | 259 | 4.02e-80 | 244 |
| MS.gene24053.t1 | AT5G50130 | 47.122 | 278 | 142 | 4 | 1 | 273 | 1 | 278 | 1.51e-79 | 245 |
| MS.gene24053.t1 | AT5G50130 | 48.846 | 260 | 129 | 3 | 1 | 256 | 1 | 260 | 1.26e-78 | 241 |
| MS.gene24053.t1 | AT5G50130 | 45.992 | 237 | 126 | 2 | 39 | 273 | 8 | 244 | 8.44e-67 | 211 |
| MS.gene24053.t1 | AT5G50130 | 45.798 | 238 | 126 | 3 | 39 | 273 | 8 | 245 | 3.03e-65 | 207 |
| MS.gene24053.t1 | AT1G03630 | 34.177 | 316 | 166 | 12 | 36 | 317 | 91 | 398 | 4.76e-30 | 118 |
| MS.gene24053.t1 | AT1G03630 | 33.866 | 313 | 171 | 11 | 36 | 317 | 89 | 396 | 5.23e-30 | 118 |
| MS.gene24053.t1 | AT5G54190 | 32.476 | 311 | 175 | 11 | 38 | 317 | 96 | 402 | 1.25e-29 | 117 |
| MS.gene24053.t1 | AT4G27440 | 32.635 | 334 | 186 | 12 | 19 | 317 | 69 | 398 | 1.87e-27 | 111 |
| MS.gene24053.t1 | AT4G27440 | 32.635 | 334 | 186 | 12 | 19 | 317 | 69 | 398 | 1.87e-27 | 111 |
| MS.gene24053.t1 | AT4G27760 | 29.934 | 304 | 184 | 7 | 34 | 317 | 57 | 351 | 6.41e-27 | 109 |
| MS.gene24053.t1 | AT4G09750 | 30.116 | 259 | 163 | 6 | 38 | 293 | 47 | 290 | 8.77e-27 | 107 |
| MS.gene24053.t1 | AT5G53090 | 28.904 | 301 | 191 | 5 | 34 | 317 | 56 | 350 | 8.51e-23 | 97.8 |
| MS.gene24053.t1 | AT5G54190 | 30.877 | 285 | 163 | 10 | 63 | 317 | 1 | 281 | 1.57e-21 | 92.8 |
| MS.gene24053.t1 | AT5G04070 | 26.471 | 306 | 197 | 9 | 37 | 323 | 61 | 357 | 6.94e-21 | 92.4 |
| MS.gene24053.t1 | AT5G15940 | 25.767 | 326 | 212 | 10 | 17 | 320 | 40 | 357 | 2.95e-20 | 90.5 |
| MS.gene24053.t1 | AT5G53100 | 31.068 | 309 | 179 | 11 | 33 | 317 | 43 | 341 | 3.07e-20 | 90.5 |
| MS.gene24053.t1 | AT5G15940 | 25.767 | 326 | 212 | 10 | 17 | 320 | 41 | 358 | 3.10e-20 | 90.5 |
| MS.gene24053.t1 | AT5G15940 | 25.767 | 326 | 212 | 10 | 17 | 320 | 41 | 358 | 3.10e-20 | 90.5 |
| MS.gene24053.t1 | AT5G15940 | 27.236 | 246 | 156 | 7 | 17 | 245 | 41 | 280 | 1.95e-18 | 84.7 |
Find 62 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATATCAATGATCAAAT+TGG | 0.192674 | 1.4:-55080436 | MS.gene24053:CDS |
| CCAAGCTTGAAAGGGGTAAC+TGG | 0.269808 | 1.4:-55079396 | MS.gene24053:CDS |
| TTTGCGTCAAATGGACTCTT+AGG | 0.333139 | 1.4:-55079333 | MS.gene24053:CDS |
| TACTCTGACAAGAAGGCTTA+TGG | 0.335582 | 1.4:-55080322 | MS.gene24053:CDS |
| CCAGTTACCCCTTTCAAGCT+TGG | 0.348372 | 1.4:+55079396 | None:intergenic |
| ATGGCTGGACCAAGTGGATT+TGG | 0.358790 | 1.4:-55082363 | MS.gene24053:CDS |
| GCAGGAGGAGCAAGTGGTAT+AGG | 0.393987 | 1.4:-55081261 | MS.gene24053:intron |
| GACTCTTAGGAAGAAAACTT+TGG | 0.399753 | 1.4:-55079320 | MS.gene24053:CDS |
| CAAGTAGAAGGTTGGTCAAA+AGG | 0.414570 | 1.4:+55080560 | None:intergenic |
| CTCTTCATCCAAGCTTGAAA+GGG | 0.423486 | 1.4:-55079404 | MS.gene24053:CDS |
| ACTCTTAGGAAGAAAACTTT+GGG | 0.424071 | 1.4:-55079319 | MS.gene24053:CDS |
| CGCAAAAGCCACTGGAATTG+AGG | 0.424532 | 1.4:-55080521 | MS.gene24053:CDS |
| CCAAGTGCATTTGCGTCAAA+TGG | 0.424836 | 1.4:-55079342 | MS.gene24053:CDS |
| TGAGCTTTCTCGTCGCTTGA+AGG | 0.425790 | 1.4:-55080266 | MS.gene24053:intron |
| TCGTTGGTCACAGGCATGGC+TGG | 0.432678 | 1.4:-55082378 | MS.gene24053:CDS |
| ATGTAGTATGTTGGCTAACT+TGG | 0.439546 | 1.4:+55080294 | None:intergenic |
| AAAGAAGAGTGTCTCATAAG+AGG | 0.446043 | 1.4:+55079834 | None:intergenic |
| CATTGTTGTTTATAGGAAGA+AGG | 0.448332 | 1.4:-55079903 | MS.gene24053:intron |
| AGAGGAGTCATTATTACTCC+TGG | 0.451331 | 1.4:+55079852 | None:intergenic |
| CCATTTGACGCAAATGCACT+TGG | 0.458408 | 1.4:+55079342 | None:intergenic |
| CAATTCCATCTTGTGTCAGT+TGG | 0.474030 | 1.4:+55080728 | None:intergenic |
| ATAATATCAATGATCAAATT+GGG | 0.478493 | 1.4:-55080435 | MS.gene24053:intron |
| AGGAGCAAGTGGTATAGGCT+TGG | 0.478994 | 1.4:-55081256 | MS.gene24053:CDS |
| CTCATTTGCATGTAGTATGT+TGG | 0.487271 | 1.4:+55080285 | None:intergenic |
| GCTCTTCATCCAAGCTTGAA+AGG | 0.487681 | 1.4:-55079405 | MS.gene24053:CDS |
| TCCATCTTGTGTCAGTTGGA+AGG | 0.493715 | 1.4:+55080732 | None:intergenic |
| CCATCTTGTGTCAGTTGGAA+GGG | 0.499557 | 1.4:+55080733 | None:intergenic |
| GCAAAAGCCACTGGAATTGA+GGG | 0.501271 | 1.4:-55080520 | MS.gene24053:CDS |
| CTTGGAGACAGCACGAGTCT+TGG | 0.504599 | 1.4:-55081238 | MS.gene24053:CDS |
| CAGTTTGCAACAAATCATCT+TGG | 0.507918 | 1.4:-55080700 | MS.gene24053:intron |
| TACTCCTGGGTGTACTGAGT+TGG | 0.511760 | 1.4:+55079866 | None:intergenic |
| CATCATCGCCGCAAGAAACA+TGG | 0.516344 | 1.4:-55081196 | MS.gene24053:CDS |
| TTTCAGTTACTCTGACAAGA+AGG | 0.517957 | 1.4:-55080329 | MS.gene24053:intron |
| TTTCTCGTTGGTCACAGGCA+TGG | 0.523160 | 1.4:-55082382 | MS.gene24053:CDS |
| CAAGCTTGAAAGGGGTAACT+GGG | 0.526253 | 1.4:-55079395 | MS.gene24053:CDS |
| CATACCTACACTTATGAAGA+AGG | 0.526398 | 1.4:-55080469 | MS.gene24053:CDS |
| CCCTTCCAACTGACACAAGA+TGG | 0.527234 | 1.4:-55080733 | MS.gene24053:CDS |
| AAACAAACCGCAAAAGCCAC+TGG | 0.530342 | 1.4:-55080529 | MS.gene24053:CDS |
| CATCTTGTGTCAGTTGGAAG+GGG | 0.533182 | 1.4:+55080734 | None:intergenic |
| TTATGAAGAAGGCATTCGAT+TGG | 0.541423 | 1.4:-55080458 | MS.gene24053:CDS |
| AATCTCACTGCAATTATCAC+AGG | 0.550167 | 1.4:-55082294 | MS.gene24053:intron |
| TGCAGACTCCATGTTTCTTG+CGG | 0.551159 | 1.4:+55081188 | None:intergenic |
| ACGAGTCTTGGCTCTTCGAA+AGG | 0.553010 | 1.4:-55081226 | MS.gene24053:CDS |
| AACTTGTTCAGCTGTTGTAG+AGG | 0.569993 | 1.4:+55082338 | None:intergenic |
| AAGCCACTGGAATTGAGGGC+AGG | 0.573938 | 1.4:-55080516 | MS.gene24053:CDS |
| GAGGAGTCATTATTACTCCT+GGG | 0.575669 | 1.4:+55079853 | None:intergenic |
| GGACAACAAGTCTGCTCGAG+TGG | 0.588369 | 1.4:-55081139 | MS.gene24053:CDS |
| GATCCTGCCCTCAATTCCAG+TGG | 0.595826 | 1.4:+55080513 | None:intergenic |
| ACAAATGCAGGAGGAGCAAG+TGG | 0.598604 | 1.4:-55081267 | MS.gene24053:intron |
| CATATGGAAGAATGTCCCAC+AGG | 0.604912 | 1.4:-55079657 | MS.gene24053:intron |
| AAGAAACATGGAGTCTGCAA+AGG | 0.621142 | 1.4:-55081184 | MS.gene24053:CDS |
| ACAGGCATGGCTGGACCAAG+TGG | 0.621510 | 1.4:-55082369 | MS.gene24053:CDS |
| AGCTAAACAAATTATACTAG+AGG | 0.622644 | 1.4:-55081160 | MS.gene24053:CDS |
| ACAGCTGAACAAGTTACTGA+AGG | 0.633665 | 1.4:-55082330 | MS.gene24053:CDS |
| TCTTCATCCAAGCTTGAAAG+GGG | 0.636952 | 1.4:-55079403 | MS.gene24053:CDS |
| TCTTCCAGAGTCAAAATGGT+GGG | 0.639735 | 1.4:-55082408 | None:intergenic |
| TGAGAGGAAGATCGAGAGCG+AGG | 0.641279 | 1.4:+55081058 | None:intergenic |
| AATGCCTTCTTCATAAGTGT+AGG | 0.646281 | 1.4:+55080465 | None:intergenic |
| ACATACATTAAGATGTTGAG+AGG | 0.647403 | 1.4:+55081042 | None:intergenic |
| GTAGAGGATCCAAATCCACT+TGG | 0.663839 | 1.4:+55082354 | None:intergenic |
| TAACAGACTTCACTGAACAA+AGG | 0.665475 | 1.4:+55081100 | None:intergenic |
| ACAGCCAACTCAGTACACCC+AGG | 0.731735 | 1.4:-55079870 | MS.gene24053:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGACATATAATAATAAATA+AGG | + | chr1.4:55081939-55081958 | None:intergenic | 10.0% |
| !!! | AAAATTTAAAACAACAAATA+TGG | + | chr1.4:55082202-55082221 | None:intergenic | 10.0% |
| !!! | ATTATAATTCTTCTTTTTTT+TGG | - | chr1.4:55080043-55080062 | MS.gene24053:intron | 10.0% |
| !!! | ATTTTTAAAAATAATGAGAA+AGG | - | chr1.4:55080709-55080728 | MS.gene24053:CDS | 10.0% |
| !!! | TACTATATAGTTTTAAAATA+CGG | + | chr1.4:55080681-55080700 | None:intergenic | 10.0% |
| !! | AAATTAAACATTGTAGAATA+AGG | + | chr1.4:55082057-55082076 | None:intergenic | 15.0% |
| !! | ATAATATCAATGATCAAATT+GGG | - | chr1.4:55081236-55081255 | MS.gene24053:CDS | 15.0% |
| !! | CATTAATTAACTAATACTAA+AGG | - | chr1.4:55080741-55080760 | MS.gene24053:CDS | 15.0% |
| !! | CTATTGTAATAAATAAATCT+TGG | - | chr1.4:55081490-55081509 | MS.gene24053:intron | 15.0% |
| !! | GAAAAATTTATGGAAATATT+GGG | + | chr1.4:55081326-55081345 | None:intergenic | 15.0% |
| !! | TGAAAAATTTATGGAAATAT+TGG | + | chr1.4:55081327-55081346 | None:intergenic | 15.0% |
| !!! | TTAAGCAATGAATTTTTTTT+AGG | + | chr1.4:55079763-55079782 | None:intergenic | 15.0% |
| !!! | TTGTTAATTTTGAAATTGTA+GGG | - | chr1.4:55082221-55082240 | MS.gene24053:intron | 15.0% |
| !!! | TTTGTTAATTTTGAAATTGT+AGG | - | chr1.4:55082220-55082239 | MS.gene24053:intron | 15.0% |
| !! | AAAGGTGATTAAAACTATTT+CGG | - | chr1.4:55080759-55080778 | MS.gene24053:CDS | 20.0% |
| !! | AGAACAAATAAAACATGATT+TGG | + | chr1.4:55080317-55080336 | None:intergenic | 20.0% |
| !! | ATTCTGTCAAAAATTTATGA+GGG | - | chr1.4:55080206-55080225 | MS.gene24053:intron | 20.0% |
| !! | GAATTAAAATAAATACCTGT+GGG | + | chr1.4:55082032-55082051 | None:intergenic | 20.0% |
| !! | GATAATATCAATGATCAAAT+TGG | - | chr1.4:55081235-55081254 | MS.gene24053:CDS | 20.0% |
| !! | TATTCTGTCAAAAATTTATG+AGG | - | chr1.4:55080205-55080224 | MS.gene24053:intron | 20.0% |
| !! | TCTTTATTATACTGTATAGT+TGG | - | chr1.4:55080135-55080154 | MS.gene24053:intron | 20.0% |
| !! | TTAGTTATATATATGCACAA+AGG | + | chr1.4:55079864-55079883 | None:intergenic | 20.0% |
| !! | TTCTATAATGTATTTGTCTA+AGG | + | chr1.4:55080824-55080843 | None:intergenic | 20.0% |
| !!! | AATCAAGACATGTTTTATTA+TGG | - | chr1.4:55079883-55079902 | MS.gene24053:CDS | 20.0% |
| !!! | AATTGGTTGTATTTTTTTTC+AGG | - | chr1.4:55081082-55081101 | MS.gene24053:CDS | 20.0% |
| !!! | TAATCTTTTTCATGTACTAT+TGG | - | chr1.4:55081442-55081461 | MS.gene24053:intron | 20.0% |
| !!! | TCATAAGAAACTTTTTTTTG+AGG | - | chr1.4:55081703-55081722 | MS.gene24053:intron | 20.0% |
| !!! | TGTTATTTAATGCACAAATT+TGG | + | chr1.4:55081732-55081751 | None:intergenic | 20.0% |
| !!! | TTGGGAAATTTTTATTGTAA+AGG | + | chr1.4:55081308-55081327 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTTCTTGATTAG+TGG | - | chr1.4:55080324-55080343 | MS.gene24053:CDS | 20.0% |
| !!! | TTTTTGACATTGTTGTTTAT+AGG | - | chr1.4:55081761-55081780 | MS.gene24053:intron | 20.0% |
| ! | AAAACAAACAAAAGAGGAAA+AGG | + | chr1.4:55079566-55079585 | None:intergenic | 25.0% |
| ! | AAAAGTAAAGGAACAAAAGA+AGG | + | chr1.4:55079526-55079545 | None:intergenic | 25.0% |
| ! | AAATTGAATGAATTCCTCTT+AGG | + | chr1.4:55081589-55081608 | None:intergenic | 25.0% |
| ! | AGCTAAACAAATTATACTAG+AGG | - | chr1.4:55080511-55080530 | MS.gene24053:CDS | 25.0% |
| ! | ATCATTTACATGTTCAAACA+AGG | + | chr1.4:55079435-55079454 | None:intergenic | 25.0% |
| ! | ATTAAGCCATGAATAAAGTT+AGG | + | chr1.4:55079735-55079754 | None:intergenic | 25.0% |
| ! | CAATTCTAATTCCATATTCT+TGG | + | chr1.4:55079475-55079494 | None:intergenic | 25.0% |
| ! | CAGAGTAACTGAAAAATTTA+TGG | + | chr1.4:55081336-55081355 | None:intergenic | 25.0% |
| ! | GGAATTAAAATAAATACCTG+TGG | + | chr1.4:55082033-55082052 | None:intergenic | 25.0% |
| ! | TACTAATACTAAACAAATGC+AGG | - | chr1.4:55080392-55080411 | MS.gene24053:intron | 25.0% |
| ! | TAGCGACTTAATAACATAAT+TGG | - | chr1.4:55080876-55080895 | MS.gene24053:intron | 25.0% |
| ! | TATAAGCCTAACTTTATTCA+TGG | - | chr1.4:55079726-55079745 | MS.gene24053:intron | 25.0% |
| ! | TATGTTATTAAGTCGCTATT+TGG | + | chr1.4:55080874-55080893 | None:intergenic | 25.0% |
| ! | TGACAGAATATATAGTTAGA+TGG | + | chr1.4:55080195-55080214 | None:intergenic | 25.0% |
| ! | TGTGCATATCATCATTTATT+TGG | - | chr1.4:55081020-55081039 | MS.gene24053:intron | 25.0% |
| ! | TTAAACATTGTAGAATAAGG+AGG | + | chr1.4:55082054-55082073 | None:intergenic | 25.0% |
| ! | TTCTGTCAAAAATTTATGAG+GGG | - | chr1.4:55080207-55080226 | MS.gene24053:intron | 25.0% |
| ! | TTGAATGTGTTTGAATATTG+AGG | - | chr1.4:55080286-55080305 | MS.gene24053:CDS | 25.0% |
| !! | AGATGTTCACATTTTACATA+TGG | - | chr1.4:55081998-55082017 | MS.gene24053:intron | 25.0% |
| !! | TGGTCAAAGTATTATTTAGA+AGG | - | chr1.4:55080155-55080174 | MS.gene24053:intron | 25.0% |
| !!! | AATTCTTCTTTTTTTTGGTC+AGG | - | chr1.4:55080048-55080067 | MS.gene24053:intron | 25.0% |
| !!! | TTGTTTTAACTCTTGTTGTA+CGG | + | chr1.4:55081892-55081911 | None:intergenic | 25.0% |
| !!! | TTTCCTCTTTTGTTTGTTTT+GGG | - | chr1.4:55079566-55079585 | MS.gene24053:intron | 25.0% |
| !!! | TTTTCCTCTTTTGTTTGTTT+TGG | - | chr1.4:55079565-55079584 | MS.gene24053:intron | 25.0% |
| !!! | TTTTGTGTATTCTAGCTAAT+TGG | - | chr1.4:55081065-55081084 | MS.gene24053:CDS | 25.0% |
| AAACATTAAGAAAGGAAGCA+GGG | - | chr1.4:55079837-55079856 | MS.gene24053:CDS | 30.0% | |
| ACAAGGTCAATTAAAAACGA+AGG | + | chr1.4:55079418-55079437 | None:intergenic | 30.0% | |
| ACATACATTAAGATGTTGAG+AGG | + | chr1.4:55080632-55080651 | None:intergenic | 30.0% | |
| ACGGTTAAAATGAAAAGAAG+AGG | + | chr1.4:55080662-55080681 | None:intergenic | 30.0% | |
| ACTCTTAGGAAGAAAACTTT+GGG | - | chr1.4:55082352-55082371 | MS.gene24053:CDS | 30.0% | |
| ATAGTGCCAAACATTAAGAA+AGG | - | chr1.4:55079829-55079848 | MS.gene24053:CDS | 30.0% | |
| TAAAACATCCACTGTGTATA+TGG | + | chr1.4:55079661-55079680 | None:intergenic | 30.0% | |
| TAATACTAAACAAATGCAGG+AGG | - | chr1.4:55080395-55080414 | MS.gene24053:intron | 30.0% | |
| ! | AAGATTTTAAATAACCGTCG+TGG | + | chr1.4:55082159-55082178 | None:intergenic | 30.0% |
| ! | CCTACTAGTATTATGTTTTG+GGG | - | chr1.4:55081550-55081569 | MS.gene24053:intron | 30.0% |
| ! | GCCTACTAGTATTATGTTTT+GGG | - | chr1.4:55081549-55081568 | MS.gene24053:intron | 30.0% |
| ! | GTTTCATTTTCTCAAGTAGA+AGG | + | chr1.4:55081126-55081145 | None:intergenic | 30.0% |
| ! | TATTTCTGACACCAAGAATA+TGG | - | chr1.4:55079461-55079480 | MS.gene24053:intron | 30.0% |
| ! | TGCCTACTAGTATTATGTTT+TGG | - | chr1.4:55081548-55081567 | MS.gene24053:intron | 30.0% |
| ! | TTGATTTTCAGAAACAATGC+TGG | - | chr1.4:55080902-55080921 | MS.gene24053:intron | 30.0% |
| !! | CATTGTTGTTTATAGGAAGA+AGG | - | chr1.4:55081768-55081787 | MS.gene24053:intron | 30.0% |
| !!! | TTCCTCTTTTGTTTGTTTTG+GGG | - | chr1.4:55079567-55079586 | MS.gene24053:intron | 30.0% |
| AATCTCACTGCAATTATCAC+AGG | - | chr1.4:55079377-55079396 | MS.gene24053:CDS | 35.0% | |
| AATGCCTTCTTCATAAGTGT+AGG | + | chr1.4:55081209-55081228 | None:intergenic | 35.0% | |
| ATTGTAAAGGTAGTAGTCAC+TGG | + | chr1.4:55081295-55081314 | None:intergenic | 35.0% | |
| CAAACAAAAGAGGAAAAGGA+AGG | + | chr1.4:55079562-55079581 | None:intergenic | 35.0% | |
| CAAACATTAAGAAAGGAAGC+AGG | - | chr1.4:55079836-55079855 | MS.gene24053:CDS | 35.0% | |
| CAGTTTGCAACAAATCATCT+TGG | - | chr1.4:55080971-55080990 | MS.gene24053:intron | 35.0% | |
| CATACCTACACTTATGAAGA+AGG | - | chr1.4:55081202-55081221 | MS.gene24053:CDS | 35.0% | |
| CATCATACACTATTATGTCG+CGG | + | chr1.4:55082113-55082132 | None:intergenic | 35.0% | |
| CCCCAAAACATAATACTAGT+AGG | + | chr1.4:55081553-55081572 | None:intergenic | 35.0% | |
| CTCATTTGCATGTAGTATGT+TGG | + | chr1.4:55081389-55081408 | None:intergenic | 35.0% | |
| CTGCTTCCTTTCTTAATGTT+TGG | + | chr1.4:55079838-55079857 | None:intergenic | 35.0% | |
| GACTCTTAGGAAGAAAACTT+TGG | - | chr1.4:55082351-55082370 | MS.gene24053:CDS | 35.0% | |
| TAACAGACTTCACTGAACAA+AGG | + | chr1.4:55080574-55080593 | None:intergenic | 35.0% | |
| TAACATCTGCAAACTTTCAG+CGG | + | chr1.4:55082136-55082155 | None:intergenic | 35.0% | |
| TACCCCAAAACAAACAAAAG+AGG | + | chr1.4:55079572-55079591 | None:intergenic | 35.0% | |
| TCATCTTGGTATGTACTATG+TGG | - | chr1.4:55080985-55081004 | MS.gene24053:intron | 35.0% | |
| TCATTTGTCCATATACACAG+TGG | - | chr1.4:55079650-55079669 | MS.gene24053:intron | 35.0% | |
| TCGAGTTTGCGATACATATA+GGG | + | chr1.4:55080251-55080270 | None:intergenic | 35.0% | |
| TTTCAGTTACTCTGACAAGA+AGG | - | chr1.4:55081342-55081361 | MS.gene24053:intron | 35.0% | |
| ! | ATGTAGTATGTTGGCTAACT+TGG | + | chr1.4:55081380-55081399 | None:intergenic | 35.0% |
| ! | CATTTTCTCAAGTAGAAGGT+TGG | + | chr1.4:55081122-55081141 | None:intergenic | 35.0% |
| !! | AAAGAAGAGTGTCTCATAAG+AGG | + | chr1.4:55081840-55081859 | None:intergenic | 35.0% |
| !! | TTATGAAGAAGGCATTCGAT+TGG | - | chr1.4:55081213-55081232 | MS.gene24053:CDS | 35.0% |
| !!! | CTTTTGTTTGTTTTGGGGTA+TGG | - | chr1.4:55079572-55079591 | MS.gene24053:intron | 35.0% |
| AAACAGAAACAGAAACCGAC+AGG | + | chr1.4:55079605-55079624 | None:intergenic | 40.0% | |
| AAAGAGGAAAAGGAAGGACA+AGG | + | chr1.4:55079556-55079575 | None:intergenic | 40.0% | |
| AAGAAACATGGAGTCTGCAA+AGG | - | chr1.4:55080487-55080506 | MS.gene24053:CDS | 40.0% | |
| ACAGCTGAACAAGTTACTGA+AGG | - | chr1.4:55079341-55079360 | MS.gene24053:CDS | 40.0% | |
| AGAGGAGTCATTATTACTCC+TGG | + | chr1.4:55081822-55081841 | None:intergenic | 40.0% | |
| CAAGGAGTGGCAAAAAGTAA+AGG | + | chr1.4:55079538-55079557 | None:intergenic | 40.0% | |
| CAATTCCATCTTGTGTCAGT+TGG | + | chr1.4:55080946-55080965 | None:intergenic | 40.0% | |
| CGTGTAGTGTAGAGTTTAGA+TGG | + | chr1.4:55081618-55081637 | None:intergenic | 40.0% | |
| CTCTTCATCCAAGCTTGAAA+GGG | - | chr1.4:55082267-55082286 | MS.gene24053:intron | 40.0% | |
| GAGGAGTCATTATTACTCCT+GGG | + | chr1.4:55081821-55081840 | None:intergenic | 40.0% | |
| GCAATTATCACAGGTCTGAA+TGG | - | chr1.4:55079386-55079405 | MS.gene24053:CDS | 40.0% | |
| GTCGAGTTTGCGATACATAT+AGG | + | chr1.4:55080252-55080271 | None:intergenic | 40.0% | |
| TACTCTGACAAGAAGGCTTA+TGG | - | chr1.4:55081349-55081368 | MS.gene24053:intron | 40.0% | |
| TATGAGGGGTCAAATAAGCA+TGG | - | chr1.4:55080221-55080240 | MS.gene24053:intron | 40.0% | |
| TCTTCATCCAAGCTTGAAAG+GGG | - | chr1.4:55082268-55082287 | MS.gene24053:intron | 40.0% | |
| ! | AACTTGTTCAGCTGTTGTAG+AGG | + | chr1.4:55079336-55079355 | None:intergenic | 40.0% |
| ! | CAAGTAGAAGGTTGGTCAAA+AGG | + | chr1.4:55081114-55081133 | None:intergenic | 40.0% |
| ! | TTTGCGTCAAATGGACTCTT+AGG | - | chr1.4:55082338-55082357 | MS.gene24053:CDS | 40.0% |
| !!! | AGTATTATGTTTTGGGGCCA+TGG | - | chr1.4:55081556-55081575 | MS.gene24053:intron | 40.0% |
| !!! | GGTAACTGGGAAGTACTTTT+TGG | - | chr1.4:55082289-55082308 | MS.gene24053:intron | 40.0% |
| !!! | GTATTATGTTTTGGGGCCAT+GGG | - | chr1.4:55081557-55081576 | MS.gene24053:intron | 40.0% |
| AAACAAACCGCAAAAGCCAC+TGG | - | chr1.4:55081142-55081161 | MS.gene24053:CDS | 45.0% | |
| AGAAACAGAAACCGACAGGA+AGG | + | chr1.4:55079601-55079620 | None:intergenic | 45.0% | |
| CAAGCTTGAAAGGGGTAACT+GGG | - | chr1.4:55082276-55082295 | MS.gene24053:intron | 45.0% | |
| CATATGGAAGAATGTCCCAC+AGG | - | chr1.4:55082014-55082033 | MS.gene24053:intron | 45.0% | |
| CATCTTGTGTCAGTTGGAAG+GGG | + | chr1.4:55080940-55080959 | None:intergenic | 45.0% | |
| CCAAGTGCATTTGCGTCAAA+TGG | - | chr1.4:55082329-55082348 | MS.gene24053:CDS | 45.0% | |
| CCATCTTGTGTCAGTTGGAA+GGG | + | chr1.4:55080941-55080960 | None:intergenic | 45.0% | |
| CCATTTGACGCAAATGCACT+TGG | + | chr1.4:55082332-55082351 | None:intergenic | 45.0% | |
| GAAACAGAAACCGACAGGAA+GGG | + | chr1.4:55079600-55079619 | None:intergenic | 45.0% | |
| GCAAAAGCCACTGGAATTGA+GGG | - | chr1.4:55081151-55081170 | MS.gene24053:CDS | 45.0% | |
| GCTCTTCATCCAAGCTTGAA+AGG | - | chr1.4:55082266-55082285 | MS.gene24053:intron | 45.0% | |
| GTAGAGGATCCAAATCCACT+TGG | + | chr1.4:55079320-55079339 | None:intergenic | 45.0% | |
| GTTTGCAGATGTTACCACGA+CGG | - | chr1.4:55082142-55082161 | MS.gene24053:intron | 45.0% | |
| TCCATCTTGTGTCAGTTGGA+AGG | + | chr1.4:55080942-55080961 | None:intergenic | 45.0% | |
| TGCAGACTCCATGTTTCTTG+CGG | + | chr1.4:55080486-55080505 | None:intergenic | 45.0% | |
| ! | CTCAATTCCAGTGGCTTTTG+CGG | + | chr1.4:55081152-55081171 | None:intergenic | 45.0% |
| ! | GGTATTTTCTCGTTGGTCAC+AGG | - | chr1.4:55079284-55079303 | MS.gene24053:CDS | 45.0% |
| ! | TCTAAGGCGTATCAACTCAG+TGG | + | chr1.4:55080808-55080827 | None:intergenic | 45.0% |
| !!! | TGTATTAAATATTTTTTTTA+AGG | - | chr1.4:55080099-55080118 | MS.gene24053:intron | 5.0% |
| ACAAATGCAGGAGGAGCAAG+TGG | - | chr1.4:55080404-55080423 | MS.gene24053:intron | 50.0% | |
| ACACTATTATGTCGCGGCTC+AGG | + | chr1.4:55082107-55082126 | None:intergenic | 50.0% | |
| AGGAGCAAGTGGTATAGGCT+TGG | - | chr1.4:55080415-55080434 | MS.gene24053:intron | 50.0% | |
| CATCATCGCCGCAAGAAACA+TGG | - | chr1.4:55080475-55080494 | MS.gene24053:CDS | 50.0% | |
| CCAAGCTTGAAAGGGGTAAC+TGG | - | chr1.4:55082275-55082294 | MS.gene24053:intron | 50.0% | |
| CCAGTTACCCCTTTCAAGCT+TGG | + | chr1.4:55082278-55082297 | None:intergenic | 50.0% | |
| CCCTTCCAACTGACACAAGA+TGG | - | chr1.4:55080938-55080957 | MS.gene24053:intron | 50.0% | |
| CGCAAAAGCCACTGGAATTG+AGG | - | chr1.4:55081150-55081169 | MS.gene24053:CDS | 50.0% | |
| GGAAAAGGAAGGACAAGGAG+TGG | + | chr1.4:55079551-55079570 | None:intergenic | 50.0% | |
| TACTCCTGGGTGTACTGAGT+TGG | + | chr1.4:55081808-55081827 | None:intergenic | 50.0% | |
| TGAGCTTTCTCGTCGCTTGA+AGG | - | chr1.4:55081405-55081424 | MS.gene24053:intron | 50.0% | |
| TTTCTCGTTGGTCACAGGCA+TGG | - | chr1.4:55079289-55079308 | MS.gene24053:CDS | 50.0% | |
| ! | ACGAGTCTTGGCTCTTCGAA+AGG | - | chr1.4:55080445-55080464 | MS.gene24053:CDS | 50.0% |
| ! | ATGGCTGGACCAAGTGGATT+TGG | - | chr1.4:55079308-55079327 | MS.gene24053:CDS | 50.0% |
| AAGCCACTGGAATTGAGGGC+AGG | - | chr1.4:55081155-55081174 | MS.gene24053:CDS | 55.0% | |
| ACAGCCAACTCAGTACACCC+AGG | - | chr1.4:55081801-55081820 | MS.gene24053:intron | 55.0% | |
| CTTGGAGACAGCACGAGTCT+TGG | - | chr1.4:55080433-55080452 | MS.gene24053:intron | 55.0% | |
| GATCCTGCCCTCAATTCCAG+TGG | + | chr1.4:55081161-55081180 | None:intergenic | 55.0% | |
| GCAGGAGGAGCAAGTGGTAT+AGG | - | chr1.4:55080410-55080429 | MS.gene24053:intron | 55.0% | |
| GGACAACAAGTCTGCTCGAG+TGG | - | chr1.4:55080532-55080551 | MS.gene24053:CDS | 55.0% | |
| GGGTATGGTACCCTTCCTGT+CGG | - | chr1.4:55079587-55079606 | MS.gene24053:intron | 55.0% | |
| TCCTCTTAGGTACGTGCCCA+TGG | + | chr1.4:55081576-55081595 | None:intergenic | 55.0% | |
| TGAGAGGAAGATCGAGAGCG+AGG | + | chr1.4:55080616-55080635 | None:intergenic | 55.0% | |
| ACAGGCATGGCTGGACCAAG+TGG | - | chr1.4:55079302-55079321 | MS.gene24053:CDS | 60.0% | |
| GCCATGGGCACGTACCTAAG+AGG | - | chr1.4:55081572-55081591 | MS.gene24053:intron | 60.0% | |
| TCGTTGGTCACAGGCATGGC+TGG | - | chr1.4:55079293-55079312 | MS.gene24053:CDS | 60.0% | |
| TTATGTCGCGGCTCAGGTCG+CGG | + | chr1.4:55082101-55082120 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 55079278 | 55082415 | 55079278 | ID=MS.gene24053 |
| chr1.4 | mRNA | 55079278 | 55082415 | 55079278 | ID=MS.gene24053.t1;Parent=MS.gene24053 |
| chr1.4 | exon | 55082295 | 55082415 | 55082295 | ID=MS.gene24053.t1.exon1;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55082295 | 55082415 | 55082295 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55081048 | 55081279 | 55081048 | ID=MS.gene24053.t1.exon2;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55081048 | 55081279 | 55081048 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55080701 | 55080780 | 55080701 | ID=MS.gene24053.t1.exon3;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55080701 | 55080780 | 55080701 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55080436 | 55080589 | 55080436 | ID=MS.gene24053.t1.exon4;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55080436 | 55080589 | 55080436 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55080267 | 55080345 | 55080267 | ID=MS.gene24053.t1.exon5;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55080267 | 55080345 | 55080267 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55079826 | 55079910 | 55079826 | ID=MS.gene24053.t1.exon6;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55079826 | 55079910 | 55079826 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55079658 | 55079704 | 55079658 | ID=MS.gene24053.t1.exon7;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55079658 | 55079704 | 55079658 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| chr1.4 | exon | 55079278 | 55079451 | 55079278 | ID=MS.gene24053.t1.exon8;Parent=MS.gene24053.t1 |
| chr1.4 | CDS | 55079278 | 55079451 | 55079278 | ID=cds.MS.gene24053.t1;Parent=MS.gene24053.t1 |
| Gene Sequence |
| Protein sequence |
