AlfalfaGEDB | MS.gene06120

M. sativa cultivar XinJiangDaYe / MS.gene06120

KEGG: -
GO: -
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06120.t1	XP_013447262.1	97.4	273	7	0	1	273	1	273	6.20E-145	523.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06120.t1	A2RVM0	45.8	264	140	2	7	270	2	262	7.1e-57	222.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06120.t1	A0A072TUU0	97.4	273	7	0	1	273	1	273	4.5e-145	523.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene06120	MS.gene20199	0.958114	5.23E-116	-1.69E-46
MS.gene06120	MS.gene55839	0.983053	1.05E-156	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000293	MS.gene06120	PPI
MS.gene006262	MS.gene06120	PPI
MS.gene006263	MS.gene06120	PPI
MS.gene006264	MS.gene06120	PPI
MS.gene006265	MS.gene06120	PPI
MS.gene012538	MS.gene06120	PPI
MS.gene013615	MS.gene06120	PPI
MS.gene023729	MS.gene06120	PPI
MS.gene03463	MS.gene06120	PPI
MS.gene035607	MS.gene06120	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06120.t1	MTR_8g099995	97.436	273	7	0	1	273	1	273	0.0	548
MS.gene06120.t1	MTR_3g077410	54.412	272	120	2	1	270	1	270	1.13e-101	300
MS.gene06120.t1	MTR_4g105310	54.412	272	120	2	1	270	12	281	2.16e-101	300
MS.gene06120.t1	MTR_4g105310	53.516	256	115	2	1	254	12	265	7.36e-94	278
MS.gene06120.t1	MTR_7g099850	49.077	271	133	4	1	270	1	267	2.36e-79	243
MS.gene06120.t1	MTR_1g068970	48.718	273	130	5	1	270	1	266	8.57e-78	239
MS.gene06120.t1	MTR_8g098415	46.591	264	137	3	7	270	2	261	2.51e-73	228
MS.gene06120.t1	MTR_8g098415	46.591	264	137	3	7	270	2	261	2.66e-73	227
MS.gene06120.t1	MTR_1g100315	45.736	258	136	3	13	270	8	261	3.01e-68	214
MS.gene06120.t1	MTR_1g100395	44.186	258	140	3	13	270	8	261	4.90e-67	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06120.t1	AT4G24050	74.908	271	67	1	1	271	1	270	1.66e-150	422
MS.gene06120.t1	AT4G24050	74.725	273	68	1	1	273	1	272	5.70e-150	423
MS.gene06120.t1	AT1G64590	73.723	274	69	2	1	273	1	272	2.97e-132	378
MS.gene06120.t1	AT5G50130	55.273	275	115	3	1	271	1	271	5.24e-103	303
MS.gene06120.t1	AT5G50130	55.474	274	114	3	1	270	1	270	8.18e-103	303
MS.gene06120.t1	AT5G50130	55.596	277	110	4	1	271	1	270	9.54e-103	303
MS.gene06120.t1	AT5G50130	55.039	258	108	3	1	254	1	254	3.32e-96	284
MS.gene06120.t1	AT5G50130	55.385	260	103	4	1	254	1	253	6.18e-96	283
MS.gene06120.t1	AT5G50130	54.741	232	104	1	40	271	8	238	1.37e-88	266
MS.gene06120.t1	AT5G50130	55.128	234	99	2	40	271	8	237	2.55e-88	265

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Find 80 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACCTAATCGGATCGGC+TGG	0.556895	4.2:-3892526	MS.gene06120:CDS
AACAAGAGGAAGAATAGTGA+CGG	0.621467	4.2:-3892320	MS.gene06120:CDS
AACGCAGTTCACAGTCACGT+TGG	0.685771	4.2:+3889995	None:intergenic
AACGTGTCGTCCGCAATACA+CGG	0.612162	4.2:-3891636	MS.gene06120:CDS
AAGAAAGCCTTCACGCTCTC+TGG	0.426194	4.2:+3889944	None:intergenic
ACAGGTGGTACGTCAGGAAT+CGG	0.485726	4.2:-3892421	MS.gene06120:CDS
ACATACATGAGGAGATTGAG+AGG	0.597540	4.2:+3892202	None:intergenic
ACCTAAATAATTAGTGGCAA+AGG	0.552038	4.2:+3891826	None:intergenic
ACCTGTTATGATGGCGGTGA+TGG	0.505842	4.2:+3892438	None:intergenic
ACCTTTGCCACTAATTATTT+AGG	0.203045	4.2:-3891827	MS.gene06120:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTAACAGAAGAGAAGAA+AGG	+	chr4.2:3892403-3892422	None:intergenic	30.0%
AATGTTCTCTATTTGTGCAT+GGG	-	chr4.2:3891592-3891611	MS.gene06120:CDS	30.0%
AATTATAGCAAATGAAGTCG+TGG	+	chr4.2:3891156-3891175	None:intergenic	30.0%
ACCTAAATAATTAGTGGCAA+AGG	+	chr4.2:3889474-3889493	None:intergenic	30.0%
ACCTTTGCCACTAATTATTT+AGG	-	chr4.2:3889470-3889489	MS.gene06120:intron	30.0%
ATAAATCTCGACACTTCTAA+TGG	+	chr4.2:3889274-3889293	None:intergenic	30.0%
ATTATAGCAAATGAAGTCGT+GGG	+	chr4.2:3891155-3891174	None:intergenic	30.0%
ATTTGGACCCATTGAAAAAT+TGG	-	chr4.2:3891624-3891643	MS.gene06120:CDS	30.0%
CAAAATTGCAGGTTAACAAA+AGG	+	chr4.2:3890225-3890244	None:intergenic	30.0%
GAAACGGTTAAATACCTAAT+CGG	-	chr4.2:3888762-3888781	MS.gene06120:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	3888756	3892563	3888756	ID=MS.gene06120
chr4.2	mRNA	3888756	3892563	3888756	ID=MS.gene06120.t1;Parent=MS.gene06120
chr4.2	exon	3892208	3892563	3892208	ID=MS.gene06120.t1.exon1;Parent=MS.gene06120.t1
chr4.2	CDS	3892208	3892563	3892208	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2	exon	3891828	3891907	3891828	ID=MS.gene06120.t1.exon2;Parent=MS.gene06120.t1
chr4.2	CDS	3891828	3891907	3891828	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2	exon	3891582	3891738	3891582	ID=MS.gene06120.t1.exon3;Parent=MS.gene06120.t1
chr4.2	CDS	3891582	3891738	3891582	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2	exon	3890359	3890440	3890359	ID=MS.gene06120.t1.exon4;Parent=MS.gene06120.t1
chr4.2	CDS	3890359	3890440	3890359	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2	exon	3889940	3890027	3889940	ID=MS.gene06120.t1.exon5;Parent=MS.gene06120.t1
chr4.2	CDS	3889940	3890027	3889940	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2	exon	3889774	3889820	3889774	ID=MS.gene06120.t1.exon6;Parent=MS.gene06120.t1
chr4.2	CDS	3889774	3889820	3889774	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2	exon	3888756	3888797	3888756	ID=MS.gene06120.t1.exon7;Parent=MS.gene06120.t1
chr4.2	CDS	3888756	3888797	3888756	ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1

Gene Sequence

>MS.gene06120

ATGCTTGAAACGGTTAAATACCTAATCGGATCGGCTGGTCCAAGCGGTTTTGGATCCAAATCCACCGCCGAACAAGTCACCGAAACCTGCGGCGATCTCCGTTCCATCACCGCCATCATAACAGGTGGTACGTCAGGAATCGGAGCGGAAACGGCGCGTGTGTTGGCGAAGAGAGGGGCGAGGGTGATTTTACCGGCGCGTAGCATGAAAAATGCGGAGGAAACAAGAGGAAGAATAGTGACGGAGTGTCCTGAAGCGGAGATTATAGTTATGGCACTTGATCTCAGTTCTCTCAATTCTGTTACCAACTTCGTTACTCGTTTTCACTCCATCGGTTTCCCTCTCAATCTCCTCATGTATGTATATGTATATACTCTCATTTCATGCAATTATGTTTTATCACATACACACATCGACAGTATTAATAATTTGATAAAAATAACATAATTCATTATAATTTCATGTGTTGGTGTCGGCGTCAGACATTAACACAAACATTAACACATGTACGTCTTCCATTAGAAGTGTCGAGATTTATTTATCATTTTTAATGATCTAATCTAATCTAATACAGTACATAAGTAGTACAGTATATATTTTTTTCGTTCTTTGACCATATTTATTTATTTGAATTTGAATGATTGGCTGTTGACTAGAAACAATGCTGGGAAGTTTGCAGAAGAGCACGCAATCTCTGAGGATGGAGTTGAAATGACCTTTGCCACTAATTATTTAGGTGAGTAAGATTACAACAAATTAATTTTTATATATTTTTGTTATTTGATGGGTATATGTATAATTTAATTAATTAATATTGTGGTGCAGGTCATTTTCTGTTGACAAAAATGTTGATGAAGAAGATGGTTGAAACGGCAAAGGAGACAGGGATACAAGGAAGGATAGTGAACGTGTCGTCCGCAATACACGGTTGGTTTACTGGCGACGTCATCTCCTATTTGGCTCATATATGCCGCAACAAAAGGTGACAAATAACTACCACTCCCTCCGTCCCGGAATATCTGACCCATTTACTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACTCTAATTAATATTACTTTCATCATTCTCAATTCAATATATTCCACTTTCCCCTTTATTTATACATTTTTCTTAATCTGTGTGAAAAACCAAACTGGCTCAGGTATTCCGGGACGGAGGGAGTATAATCTTATCAATTTATTTGACTTATTCGTTATTACACCTTGAATGAAATTTTGGTTAAGCTAGCTGAACACTCGTCTCTGGGGATTGGTTGGATATGTATTCACATTGTTATAAAGAAGGTCATATCATATTTTTATATTAATTTATTTTAAAATTAGTTTTAATTTTGCCACAAGAGTATGTATATATACCCAACTATCTAAGAATTTACCTTTTGTCCAAAAAAAAAAATTACCTTTTGTTAACCTGCAATTTTGCCAAAACTTTGGGCCAGTAATACCATGTAACTCGGAAGAGATATGGTCTTTATACGTGAGGTGTTGTTACTATAGGCGTTAAATATATTAGAATTGCAAACATATCTCTAGTGTATTCTTTTGTTAGTAATCCTTAATATATTAAATTGATAAAAAAATATATTTGAGGATTAAATTGGCTATCATAAAACAAAGGGAAATGTTAACCAGTGCCCCGGGCACTGGTTAAGGCCTTTAAATGGTAACTTATCATGAAAATATGTGTAATCAATGCATCGGAAATCGAAATCCTTGACTTTTTTATAAAATTATTTCTTCTTTTAGAATCCTTAAAGAGTGCCCCGGGGGCACTCGTTAACAAGACCCTAAAACAAATTACGAGGACTACAATGACTAATAAAAATTACTACCATTTATGAATGTGTTTGTAGTTTCAATGCATTCAAGGATCAATGACATCTAGTTACACTTCCAAGTTTCGGAACAAAAATGTGATTTTCACGTAAACAAGCCGTACTTGAAATGAAAATGATGTGATATGTTTACCAAACACTACACTACACTACGCTACATTTGTGTTTCTGTTTACTAATTTGTTGGATTGAAATATGTTTGTGTTGTGTGATGTCCCCAGTGAGTACGACGCCACACGTGCTTATGCTCTTTCCAAACTCGCCAACGTTTTCCACACTAACGAGCTTTCTCGCAGACTCAAGGTAACATATAATTTCACTACACTATCTATTCATTCATCTTTTATGGAGTATTTTATTTAATTTAATTAACTATAATAACATGCAATATCCATCTCGATCTCATCTACTATAGTATAGTAGTATCATCTACATATATCCTATCCATATTTAAAAGTGAAATTTGTTTGTTTGCTATGTCAGTAATCAAATGCCCCACGACTTCATTTGCTATAATTTAACCCCTGCCTGTTCTTGCTAATTATTTCTCCAGTTTATATAGTTTATTTTATTAATGAGCACGTATAAATAAATAAAATACTAGTAAATAATTTGGGGTATTAAATATGTGCAGGAAATGGATGCCAACGTGACTGTGAACTGCGTTCATCCGGGGGTCGTGAGAACCAGACTCACCAGAGAGCGTGAAGGCTTTCTTACAGGTTGGTAGGAACAATAACACTCTTGTTTTGGGTCAAAGTTTTGGTTCCTTTTTTATGTCTGCAGTGCAGCCGTTAATTGATTTCAGAATTTTCCTTTTCTATTCTAAAATCAAATGCAGATTTAGTTTTCTTCTTGGCTTCCAAGCTCTTAAAGACCATTCCCCAGGTAAATACAATACACTATAGTAGAACTTGTACTATAATATATATTCAATGTTCTCTATTTGTGCATGGGTAAAGTTTAATTTGGACCCATTGAAAAATTGGTCCAACTTGACCAATTAACTTAAACCATTGATCAAATAAGATGTATAGATTTTAGGCTTAATTGCACTTTTGGCCCCCTAACTTTTCAAAAGTTGCGGTTATGGTCCCCTAACTAATTTAAATACAAAACAGCCCCCTAAGTATTGATTCTTTGGCAGTTTTGGCCCCCTGGTCCATTTTTGACTTGGTCGTTGATGACGTGGCACCCAGACCCCTTATGTTTGGTGCCACGTGGATATTATTTATTTTTATTTTTTTTAAAAGCTTGCTGGCATTTTTAAATTGGGGAAGAAATTAAAAAAAAAAAATTAGTTTCTTCTTCTTCTCACGTTCCCTTCTTCTCCCACAACCACTAATCTTCCTCTCCCTTCTCCTTACTGACAACCTCCACCCTTCCGCCGTCATCGTCGTTGCTACCCCTTTTTCCTCTCCCTTCTCCTCACCGACCACCTCCACCCTTATCACCACTCTTCCTTCCATCGTCATCTGATCCGTCGCCGTAATAAGCCTCCACCCTTATCACCTCTTTTTCTTCGATTTGGAACTGCAAGGATGGGTCCGACTTGAACTGAGCCAGACTTACTTGTTCTTTCTCCCTCCACTTTGATTCCGCCTTGCTCACCTTCTTGATGTTGGATTCGGTTCTGGACTCCGTTCTTTCTTCTTCCTTCACCGATTTGTCTTCATTTCTTTAATTTTCAAGGTTGTTTGATGTTGTATAGATCGGCTTATGAATCAATTACAACTTCCTCTCCTTTCTTCTCTTCTGTTAGATTCGGTTACAAGCTTGTGTTTGTGAGTTCATTTCTAGTGACTCGGTTTGTATTGAACAGATTGAAAACGTGTGTGTGTTATGAACAACTTTGTAATGTCAGATGTATGCTCATTGTGAGCACCGAGTTTCTGATGAAGGTTGA

Protein sequence

>MS.gene06120.t1

MLETVKYLIGSAGPSGFGSKSTAEQVTETCGDLRSITAIITGGTSGIGAETARVLAKRGARVILPARSMKNAEETRGRIVTECPEAEIIVMALDLSSLNSVTNFVTRFHSIGFPLNLLINNAGKFAEEHAISEDGVEMTFATNYLGHFLLTKMLMKKMVETAKETGIQGRIVNVSSAIHGWFTGDVISYLAHICRNKSEYDATRAYALSKLANVFHTNELSRRLKEMDANVTVNCVHPGVVRTRLTREREGFLTDLVFFLASKLLKTIPQMYAHCEHRVSDEG