AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06120.t1 MTR_8g099995 97.436 273 7 0 1 273 1 273 0.0 548
MS.gene06120.t1 MTR_3g077410 54.412 272 120 2 1 270 1 270 1.13e-101 300
MS.gene06120.t1 MTR_4g105310 54.412 272 120 2 1 270 12 281 2.16e-101 300
MS.gene06120.t1 MTR_4g105310 53.516 256 115 2 1 254 12 265 7.36e-94 278
MS.gene06120.t1 MTR_7g099850 49.077 271 133 4 1 270 1 267 2.36e-79 243
MS.gene06120.t1 MTR_1g068970 48.718 273 130 5 1 270 1 266 8.57e-78 239
MS.gene06120.t1 MTR_8g098415 46.591 264 137 3 7 270 2 261 2.51e-73 228
MS.gene06120.t1 MTR_8g098415 46.591 264 137 3 7 270 2 261 2.66e-73 227
MS.gene06120.t1 MTR_1g100315 45.736 258 136 3 13 270 8 261 3.01e-68 214
MS.gene06120.t1 MTR_1g100395 44.186 258 140 3 13 270 8 261 4.90e-67 211
MS.gene06120.t1 MTR_1g100335 47.458 236 121 2 13 248 8 240 8.33e-66 206
MS.gene06120.t1 MTR_1g100335 44.106 263 140 4 13 272 8 266 3.04e-65 205
MS.gene06120.t1 MTR_8g098415 50.000 220 107 2 7 226 2 218 3.59e-65 203
MS.gene06120.t1 MTR_1g100335 47.660 235 120 2 13 247 8 239 5.34e-65 206
MS.gene06120.t1 MTR_1g100305 43.023 258 143 3 13 270 8 261 3.11e-64 204
MS.gene06120.t1 MTR_6g053550 45.560 259 136 3 14 270 17 272 8.92e-64 203
MS.gene06120.t1 MTR_6g053600 44.574 258 138 3 15 270 4 258 7.40e-63 200
MS.gene06120.t1 MTR_1g068970 45.366 205 103 4 69 270 1 199 1.96e-51 169
MS.gene06120.t1 MTR_8g098415 43.961 207 113 2 64 270 1 204 5.01e-51 168
MS.gene06120.t1 MTR_6g081020 32.593 270 154 8 33 282 59 320 4.60e-26 105
MS.gene06120.t1 MTR_3g009190 30.380 237 150 4 39 264 66 298 2.00e-22 95.9
MS.gene06120.t1 MTR_6g453040 30.380 237 150 4 39 264 44 276 2.19e-22 95.5
MS.gene06120.t1 MTR_3g009190 30.380 237 150 4 39 264 84 316 2.28e-22 95.9
MS.gene06120.t1 MTR_3g091070 29.412 238 133 6 39 264 44 258 7.20e-21 90.9
MS.gene06120.t1 MTR_6g041980 30.055 183 119 3 39 221 70 243 1.85e-20 88.6
MS.gene06120.t1 MTR_6g041980 29.268 205 134 4 39 243 70 263 3.62e-20 89.0
MS.gene06120.t1 MTR_3g009190 29.536 237 152 4 39 264 65 297 6.71e-20 88.6
MS.gene06120.t1 MTR_2g079710 30.435 230 138 6 33 243 84 310 8.59e-19 85.9
MS.gene06120.t1 MTR_8g022500 42.342 111 39 1 40 150 431 516 2.65e-17 82.0
MS.gene06120.t1 MTR_6g453040 29.648 199 127 3 38 227 65 259 1.37e-15 75.5
MS.gene06120.t1 MTR_6g453040 31.757 148 91 2 38 179 65 208 5.83e-14 70.5
MS.gene06120.t1 MTR_4g087460 26.394 269 166 7 34 270 20 288 1.81e-12 66.6
MS.gene06120.t1 MTR_3g098470 28.400 250 124 11 38 246 37 272 2.04e-11 63.5
MS.gene06120.t1 MTR_3g085740 28.405 257 134 10 23 269 65 281 4.82e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06120.t1 AT4G24050 74.908 271 67 1 1 271 1 270 1.66e-150 422
MS.gene06120.t1 AT4G24050 74.725 273 68 1 1 273 1 272 5.70e-150 423
MS.gene06120.t1 AT1G64590 73.723 274 69 2 1 273 1 272 2.97e-132 378
MS.gene06120.t1 AT5G50130 55.273 275 115 3 1 271 1 271 5.24e-103 303
MS.gene06120.t1 AT5G50130 55.474 274 114 3 1 270 1 270 8.18e-103 303
MS.gene06120.t1 AT5G50130 55.596 277 110 4 1 271 1 270 9.54e-103 303
MS.gene06120.t1 AT5G50130 55.039 258 108 3 1 254 1 254 3.32e-96 284
MS.gene06120.t1 AT5G50130 55.385 260 103 4 1 254 1 253 6.18e-96 283
MS.gene06120.t1 AT5G50130 54.741 232 104 1 40 271 8 238 1.37e-88 266
MS.gene06120.t1 AT5G50130 55.128 234 99 2 40 271 8 237 2.55e-88 265
MS.gene06120.t1 AT5G50130 54.978 231 103 1 40 270 8 237 2.58e-88 265
MS.gene06120.t1 AT5G50130 55.365 233 98 2 40 270 8 236 3.43e-88 265
MS.gene06120.t1 AT2G37540 47.909 263 133 3 8 270 7 265 3.83e-75 232
MS.gene06120.t1 AT2G37540 50.000 240 117 2 8 247 7 243 5.85e-75 230
MS.gene06120.t1 AT4G23430 45.833 264 140 2 7 270 2 262 2.77e-74 230
MS.gene06120.t1 AT4G23420 44.906 265 143 2 7 271 2 263 5.48e-73 225
MS.gene06120.t1 AT4G23420 45.076 264 142 2 7 270 2 262 2.45e-72 225
MS.gene06120.t1 AT4G23420 45.076 264 142 2 7 270 2 262 2.45e-72 225
MS.gene06120.t1 AT4G23430 45.489 266 136 3 7 270 2 260 2.28e-71 223
MS.gene06120.t1 AT4G23420 45.312 256 137 2 15 270 27 279 1.83e-69 218
MS.gene06120.t1 AT4G23420 47.280 239 123 2 7 245 2 237 2.83e-69 215
MS.gene06120.t1 AT5G02540 48.679 265 128 4 8 270 7 265 5.36e-69 217
MS.gene06120.t1 AT4G11410 43.798 258 141 3 13 270 8 261 5.75e-67 211
MS.gene06120.t1 AT4G11410 45.532 235 125 2 13 247 8 239 2.01e-65 206
MS.gene06120.t1 AT4G23430 42.803 264 138 3 7 270 2 252 5.58e-64 203
MS.gene06120.t1 AT4G23430 42.481 266 134 4 7 270 2 250 4.11e-61 196
MS.gene06120.t1 AT5G53090 36.937 222 126 5 33 248 54 267 3.86e-28 111
MS.gene06120.t1 AT5G53100 36.638 232 131 5 33 256 42 265 1.10e-27 110
MS.gene06120.t1 AT4G27760 34.783 230 136 5 33 256 55 276 1.51e-25 104
MS.gene06120.t1 AT5G15940 32.443 262 158 8 17 265 41 296 1.30e-24 100
MS.gene06120.t1 AT5G15940 32.443 262 158 8 17 265 40 295 2.60e-24 100
MS.gene06120.t1 AT5G15940 32.443 262 158 8 17 265 41 296 2.94e-24 100
MS.gene06120.t1 AT5G15940 32.443 262 158 8 17 265 41 296 2.94e-24 100
MS.gene06120.t1 AT5G54190 29.130 230 141 6 33 243 90 316 9.19e-21 91.7
MS.gene06120.t1 AT5G04070 30.472 233 143 6 39 258 62 288 1.01e-20 90.9
MS.gene06120.t1 AT1G03630 33.772 228 130 8 34 243 86 310 1.20e-20 91.3
MS.gene06120.t1 AT1G03630 33.772 228 130 8 34 243 88 312 1.36e-20 90.9
MS.gene06120.t1 AT4G09750 28.780 205 135 5 39 243 47 240 2.27e-20 89.4
MS.gene06120.t1 AT4G27440 31.780 236 138 7 33 248 86 318 3.50e-20 89.7
MS.gene06120.t1 AT4G27440 31.780 236 138 7 33 248 86 318 3.50e-20 89.7

Find 80 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTGCCACTAATTATTT+AGG 0.203045 4.2:-3891827 MS.gene06120:intron
GCAATACACGGTTGGTTTAC+TGG 0.224176 4.2:-3891624 MS.gene06120:CDS
GACTTGTTCGGCGGTGGATT+TGG 0.246150 4.2:+3892486 None:intergenic
GAGCGTGAAGGCTTTCTTAC+AGG 0.265658 4.2:-3889939 MS.gene06120:intron
TCGGCTGGTCCAAGCGGTTT+TGG 0.276106 4.2:-3892511 MS.gene06120:CDS
TGGCGACGTCATCTCCTATT+TGG 0.287781 4.2:-3891604 MS.gene06120:CDS
GTGGAAAACGTTGGCGAGTT+TGG 0.312144 4.2:+3890386 None:intergenic
GACTGTGAACTGCGTTCATC+CGG 0.337210 4.2:-3889988 MS.gene06120:CDS
ACGGAGATCGCCGCAGGTTT+CGG 0.369374 4.2:+3892462 None:intergenic
GCGGCATATATGAGCCAAAT+AGG 0.369833 4.2:+3891590 None:intergenic
TCCATCACCGCCATCATAAC+AGG 0.393753 4.2:-3892439 MS.gene06120:CDS
TTCACGCTCTCTGGTGAGTC+TGG 0.403631 4.2:+3889953 None:intergenic
AAGAAAGCCTTCACGCTCTC+TGG 0.426194 4.2:+3889944 None:intergenic
GCAGGTTTCGGTGACTTGTT+CGG 0.429594 4.2:+3892474 None:intergenic
CTCATATATGCCGCAACAAA+AGG 0.429884 4.2:-3891581 MS.gene06120:intron
GAAACGGTTAAATACCTAAT+CGG 0.430694 4.2:-3892535 MS.gene06120:CDS
TTACTCACCTAAATAATTAG+TGG 0.432077 4.2:+3891820 None:intergenic
TTCGGTGACTTGTTCGGCGG+TGG 0.432304 4.2:+3892480 None:intergenic
TTGGACCAGCCGATCCGATT+AGG 0.439518 4.2:+3892521 None:intergenic
GGGAATGGTCTTTAAGAGCT+TGG 0.440263 4.2:+3889777 None:intergenic
GTTGAAACGGCAAAGGAGAC+AGG 0.443768 4.2:-3891678 MS.gene06120:CDS
ACTGTGAACTGCGTTCATCC+GGG 0.463347 4.2:-3889987 MS.gene06120:CDS
ATAACTATAATCTCCGCTTC+AGG 0.466241 4.2:+3892292 None:intergenic
ATCATAACAGGTGGTACGTC+AGG 0.468933 4.2:-3892427 MS.gene06120:CDS
AGCGGAAACGGCGCGTGTGT+TGG 0.478909 4.2:-3892398 MS.gene06120:CDS
ACAGGTGGTACGTCAGGAAT+CGG 0.485726 4.2:-3892421 MS.gene06120:CDS
CGCGTGTGTTGGCGAAGAGA+GGG 0.487691 4.2:-3892387 MS.gene06120:CDS
GTCAGGAATCGGAGCGGAAA+CGG 0.496545 4.2:-3892410 MS.gene06120:CDS
CGAGTTTCTGATGAAGGTTG+AGG 0.498961 4.2:-3888754 None:intergenic
TGAAGCGGAGATTATAGTTA+TGG 0.500400 4.2:-3892290 MS.gene06120:CDS
ACCTGTTATGATGGCGGTGA+TGG 0.505842 4.2:+3892438 None:intergenic
GATGGAACGGAGATCGCCGC+AGG 0.516652 4.2:+3892456 None:intergenic
GCGCGTGTGTTGGCGAAGAG+AGG 0.525349 4.2:-3892388 MS.gene06120:CDS
TGACGTACCACCTGTTATGA+TGG 0.526556 4.2:+3892429 None:intergenic
AGTCTGGTTCTCACGACCCC+CGG 0.529567 4.2:+3889969 None:intergenic
TATTGTATTTACCTGGGGAA+TGG 0.530601 4.2:+3889762 None:intergenic
ATTTCACAAGATGCTTGAAA+CGG 0.543773 4.2:-3892551 None:intergenic
CTGTGAACTGCGTTCATCCG+GGG 0.545350 4.2:-3889986 MS.gene06120:CDS
CTCAACCTTCATCAGAAACT+CGG 0.551432 4.2:+3888755 None:intergenic
ACCTAAATAATTAGTGGCAA+AGG 0.552038 4.2:+3891826 None:intergenic
TGTTGGCGAAGAGAGGGGCG+AGG 0.552443 4.2:-3892381 MS.gene06120:CDS
GATTTGGATCCAAAACCGCT+TGG 0.553143 4.2:+3892502 None:intergenic
GAGCACCGAGTTTCTGATGA+AGG 0.554084 4.2:-3888760 MS.gene06120:CDS
AAATACCTAATCGGATCGGC+TGG 0.556895 4.2:-3892526 MS.gene06120:CDS
GCTCTTAAAGACCATTCCCC+AGG 0.566840 4.2:-3889773 MS.gene06120:intron
GCAAAGGAGACAGGGATACA+AGG 0.572206 4.2:-3891669 MS.gene06120:CDS
CTGTTGACTAGAAACAATGC+TGG 0.579851 4.2:-3891896 MS.gene06120:intron
CGAGCTTTCTCGCAGACTCA+AGG 0.580007 4.2:-3890358 MS.gene06120:intron
GAGCACGCAATCTCTGAGGA+TGG 0.582321 4.2:-3891860 MS.gene06120:CDS
TGCGAGAAAGCTCGTTAGTG+TGG 0.589054 4.2:+3890367 None:intergenic
GATGAAGAAGATGGTTGAAA+CGG 0.596299 4.2:-3891691 MS.gene06120:CDS
ACATACATGAGGAGATTGAG+AGG 0.597540 4.2:+3892202 None:intergenic
GTTGGCGAAGAGAGGGGCGA+GGG 0.600330 4.2:-3892380 MS.gene06120:CDS
GTGAAAACGAGTAACGAAGT+TGG 0.605876 4.2:+3892237 None:intergenic
GCGTGTGTTGGCGAAGAGAG+GGG 0.611397 4.2:-3892386 MS.gene06120:CDS
AACGTGTCGTCCGCAATACA+CGG 0.612162 4.2:-3891636 MS.gene06120:CDS
TGTGAACTGCGTTCATCCGG+GGG 0.618545 4.2:-3889985 MS.gene06120:CDS
TGTCGTCCGCAATACACGGT+TGG 0.620494 4.2:-3891632 MS.gene06120:CDS
AACAAGAGGAAGAATAGTGA+CGG 0.621467 4.2:-3892320 MS.gene06120:CDS
GAAGATGGTTGAAACGGCAA+AGG 0.624723 4.2:-3891685 MS.gene06120:CDS
CTCGTTAGTGTGGAAAACGT+TGG 0.627285 4.2:+3890377 None:intergenic
TTGAAACGGCAAAGGAGACA+GGG 0.627738 4.2:-3891677 MS.gene06120:CDS
GAGATTGAGAGGGAAACCGA+TGG 0.630117 4.2:+3892213 None:intergenic
AGGAGACAGGGATACAAGGA+AGG 0.631549 4.2:-3891665 MS.gene06120:CDS
ATCGGATCGGCTGGTCCAAG+CGG 0.634484 4.2:-3892517 MS.gene06120:CDS
TTATGATGGCGGTGATGGAA+CGG 0.635306 4.2:+3892443 None:intergenic
CATACATGAGGAGATTGAGA+GGG 0.645624 4.2:+3892203 None:intergenic
GGAAAGAGCATAAGCACGTG+TGG 0.646988 4.2:+3890407 None:intergenic
AGTGACGGAGTGTCCTGAAG+CGG 0.658575 4.2:-3892305 MS.gene06120:CDS
TGTTGACTAGAAACAATGCT+GGG 0.670168 4.2:-3891895 MS.gene06120:intron
GGTTAAATACCTAATCGGAT+CGG 0.671311 4.2:-3892530 MS.gene06120:CDS
GAACAAGTCACCGAAACCTG+CGG 0.682551 4.2:-3892472 MS.gene06120:CDS
AACGCAGTTCACAGTCACGT+TGG 0.685771 4.2:+3889995 None:intergenic
AGTAAACCAACCGTGTATTG+CGG 0.688794 4.2:+3891626 None:intergenic
ATCACCGCCATCATAACAGG+TGG 0.694207 4.2:-3892436 MS.gene06120:CDS
GGTTTCGGTGACTTGTTCGG+CGG 0.695585 4.2:+3892477 None:intergenic
AGAAGAGCACGCAATCTCTG+AGG 0.699359 4.2:-3891864 MS.gene06120:CDS
AGACTCACCAGAGAGCGTGA+AGG 0.708096 4.2:-3889951 MS.gene06120:CDS
CGTACCACCTGTTATGATGG+CGG 0.715495 4.2:+3892432 None:intergenic
TGGTACGTCAGGAATCGGAG+CGG 0.757116 4.2:-3892416 MS.gene06120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATACTAGTAAATAATTT+GGG - chr4.2:3891252-3891271 MS.gene06120:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4.2:3889916-3889935 None:intergenic 10.0%
!! ATAAAATAAACTATATAAAC+TGG + chr4.2:3891210-3891229 None:intergenic 10.0%
!! CAAATTCAAATAAATAAATA+TGG + chr4.2:3889372-3889391 None:intergenic 10.0%
!! TAAAATACTAGTAAATAATT+TGG - chr4.2:3891251-3891270 MS.gene06120:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4.2:3889917-3889936 None:intergenic 10.0%
!! TTGATAAAAAAATATATTTG+AGG - chr4.2:3890391-3890410 MS.gene06120:CDS 10.0%
!!! ATAATTTTATAAAAAAGTCA+AGG + chr4.2:3890537-3890556 None:intergenic 10.0%
!!! ATATATTTTTGTTATTTGAT+GGG - chr4.2:3889521-3889540 MS.gene06120:intron 10.0%
!!! TATATATTTTTGTTATTTGA+TGG - chr4.2:3889520-3889539 MS.gene06120:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr4.2:3891756-3891775 None:intergenic 10.0%
!! AAATACTAGTAAATAATTTG+GGG - chr4.2:3891253-3891272 MS.gene06120:intron 15.0%
!! AATATATTTGAGGATTAAAT+TGG - chr4.2:3890401-3890420 MS.gene06120:CDS 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4.2:3889851-3889870 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4.2:3889915-3889934 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4.2:3889852-3889871 None:intergenic 15.0%
!! TTTATTTGAATTTGAATGAT+TGG - chr4.2:3889378-3889397 MS.gene06120:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr4.2:3891755-3891774 None:intergenic 15.0%
!!! AAAATTCTGAAATCAATTAA+CGG + chr4.2:3891452-3891471 None:intergenic 15.0%
!!! AAATAAGATGTATAGATTTT+AGG - chr4.2:3891680-3891699 MS.gene06120:CDS 15.0%
!!! AATTTTTTTTTTTGGACAAA+AGG + chr4.2:3890201-3890220 None:intergenic 15.0%
!!! ACAAATTTCACTTTTAAATA+TGG + chr4.2:3891105-3891124 None:intergenic 15.0%
!!! ATTTGATTTTAGAATAGAAA+AGG + chr4.2:3891475-3891494 None:intergenic 15.0%
!!! CAAAAGGTAATTTTTTTTTT+TGG + chr4.2:3890209-3890228 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr4.2:3891757-3891776 None:intergenic 15.0%
!! AAAAATAAATAATATCCACG+TGG + chr4.2:3891877-3891896 None:intergenic 20.0%
!! TATATACATATACATACATG+AGG + chr4.2:3889109-3889128 None:intergenic 20.0%
!! TATTCACATTGTTATAAAGA+AGG - chr4.2:3890085-3890104 MS.gene06120:intron 20.0%
!! TTAAAGAAATGAAGACAAAT+CGG + chr4.2:3892322-3892341 None:intergenic 20.0%
!! TTCATTATAATTTCATGTGT+TGG - chr4.2:3889203-3889222 MS.gene06120:intron 20.0%
!!! ATCTATTCATTCATCTTTTA+TGG - chr4.2:3890984-3891003 MS.gene06120:intron 20.0%
!!! CTTCATTTCTTTAATTTTCA+AGG - chr4.2:3892328-3892347 MS.gene06120:CDS 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr4.2:3889782-3889801 None:intergenic 20.0%
!!! TATACATCTTATTTGATCAA+TGG + chr4.2:3891674-3891693 None:intergenic 20.0%
!!! TATTTTTTTTAAAAGCTTGC+TGG - chr4.2:3891896-3891915 MS.gene06120:intron 20.0%
!!! TTTCACTTTTAAATATGGAT+AGG + chr4.2:3891100-3891119 None:intergenic 20.0%
! AAGGTAAATTCTTAGATAGT+TGG + chr4.2:3890182-3890201 None:intergenic 25.0%
! AATATGTGTAATCAATGCAT+CGG - chr4.2:3890501-3890520 MS.gene06120:intron 25.0%
! AATTGGCTATCATAAAACAA+AGG - chr4.2:3890418-3890437 MS.gene06120:CDS 25.0%
! ACTACAAACACATTCATAAA+TGG + chr4.2:3890657-3890676 None:intergenic 25.0%
! AGGTAAATTCTTAGATAGTT+GGG + chr4.2:3890181-3890200 None:intergenic 25.0%
! ATAGTGTATTGTATTTACCT+GGG + chr4.2:3891544-3891563 None:intergenic 25.0%
! ATTAATTAATATTGTGGTGC+AGG - chr4.2:3889559-3889578 MS.gene06120:intron 25.0%
! ATTGGCTATCATAAAACAAA+GGG - chr4.2:3890419-3890438 MS.gene06120:CDS 25.0%
! CATGATAAGTTACCATTTAA+AGG + chr4.2:3890479-3890498 None:intergenic 25.0%
! CTTAACCAAAATTTCATTCA+AGG + chr4.2:3890027-3890046 None:intergenic 25.0%
! TATAGTGTATTGTATTTACC+TGG + chr4.2:3891545-3891564 None:intergenic 25.0%
! TATTAAATATGTGCAGGAAA+TGG - chr4.2:3891276-3891295 MS.gene06120:intron 25.0%
! TTACTCACCTAAATAATTAG+TGG + chr4.2:3889480-3889499 None:intergenic 25.0%
! TTGTTTGATGTTGTATAGAT+CGG - chr4.2:3892351-3892370 MS.gene06120:CDS 25.0%
!! AAAAATGTTGATGAAGAAGA+TGG - chr4.2:3889597-3889616 MS.gene06120:intron 25.0%
!! GATCAATGGTTTAAGTTAAT+TGG + chr4.2:3891660-3891679 None:intergenic 25.0%
!! GTTTCTGTTTACTAATTTGT+TGG - chr4.2:3890822-3890841 MS.gene06120:intron 25.0%
!! TTACACCTTGAATGAAATTT+TGG - chr4.2:3890019-3890038 MS.gene06120:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4.2:3889805-3889824 None:intergenic 25.0%
!! TTTAAGTTAATTGGTCAAGT+TGG + chr4.2:3891651-3891670 None:intergenic 25.0%
!!! AACAATAACACTCTTGTTTT+GGG - chr4.2:3891389-3891408 MS.gene06120:intron 25.0%
!!! CATCATTTTCATTTCAAGTA+CGG + chr4.2:3890759-3890778 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr4.2:3889783-3889802 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4.2:3889804-3889823 None:intergenic 25.0%
AATCTAACAGAAGAGAAGAA+AGG + chr4.2:3892403-3892422 None:intergenic 30.0%
AATGTTCTCTATTTGTGCAT+GGG - chr4.2:3891592-3891611 MS.gene06120:CDS 30.0%
AATTATAGCAAATGAAGTCG+TGG + chr4.2:3891156-3891175 None:intergenic 30.0%
ACCTAAATAATTAGTGGCAA+AGG + chr4.2:3889474-3889493 None:intergenic 30.0%
ACCTTTGCCACTAATTATTT+AGG - chr4.2:3889470-3889489 MS.gene06120:intron 30.0%
ATAAATCTCGACACTTCTAA+TGG + chr4.2:3889274-3889293 None:intergenic 30.0%
ATTATAGCAAATGAAGTCGT+GGG + chr4.2:3891155-3891174 None:intergenic 30.0%
ATTTGGACCCATTGAAAAAT+TGG - chr4.2:3891624-3891643 MS.gene06120:CDS 30.0%
CAAAATTGCAGGTTAACAAA+AGG + chr4.2:3890225-3890244 None:intergenic 30.0%
GAAACGGTTAAATACCTAAT+CGG - chr4.2:3888762-3888781 MS.gene06120:CDS 30.0%
GAGAAATAATTAGCAAGAAC+AGG + chr4.2:3891188-3891207 None:intergenic 30.0%
GGTATATATACATACTCTTG+TGG + chr4.2:3890160-3890179 None:intergenic 30.0%
TAGTGTATTGTATTTACCTG+GGG + chr4.2:3891543-3891562 None:intergenic 30.0%
TGCATGGGTAAAGTTTAATT+TGG - chr4.2:3891607-3891626 MS.gene06120:CDS 30.0%
TGCCAAAGAATCAATACTTA+GGG + chr4.2:3891784-3891803 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4.2:3889908-3889927 None:intergenic 30.0%
TTCTTCTCTTCTGTTAGATT+CGG - chr4.2:3892403-3892422 MS.gene06120:CDS 30.0%
TTGTAGTTTCAATGCATTCA+AGG - chr4.2:3890670-3890689 MS.gene06120:intron 30.0%
! ATAATTTCATGTGTTGGTGT+CGG - chr4.2:3889209-3889228 MS.gene06120:intron 30.0%
! CTTGCTGGCATTTTTAAATT+GGG - chr4.2:3891911-3891930 MS.gene06120:intron 30.0%
! TGCAATTTTGCCAAAACTTT+GGG - chr4.2:3890235-3890254 MS.gene06120:intron 30.0%
! TTATTTGTCACCTTTTGTTG+CGG + chr4.2:3889729-3889748 None:intergenic 30.0%
! TTGCTGGCATTTTTAAATTG+GGG - chr4.2:3891912-3891931 MS.gene06120:intron 30.0%
! TTTAGGCTTAATTGCACTTT+TGG - chr4.2:3891697-3891716 MS.gene06120:CDS 30.0%
!! AAGTTGGACCAATTTTTCAA+TGG + chr4.2:3891635-3891654 None:intergenic 30.0%
!! AGTTGGACCAATTTTTCAAT+GGG + chr4.2:3891634-3891653 None:intergenic 30.0%
!! GAACAATAACACTCTTGTTT+TGG - chr4.2:3891388-3891407 MS.gene06120:intron 30.0%
!!! AGTCCTCGTAATTTGTTTTA+GGG + chr4.2:3890611-3890630 None:intergenic 30.0%
!!! TAGTCCTCGTAATTTGTTTT+AGG + chr4.2:3890612-3890631 None:intergenic 30.0%
!!! TATTGATTCTTTGGCAGTTT+TGG - chr4.2:3891788-3891807 MS.gene06120:intron 30.0%
!!! TGCAGATTTAGTTTTCTTCT+TGG - chr4.2:3891494-3891513 MS.gene06120:intron 30.0%
AAATGAAGACAAATCGGTGA+AGG + chr4.2:3892316-3892335 None:intergenic 35.0%
AACAAGAGGAAGAATAGTGA+CGG - chr4.2:3888977-3888996 MS.gene06120:intron 35.0%
AATAATTAGCAAGAACAGGC+AGG + chr4.2:3891184-3891203 None:intergenic 35.0%
AGACCCTAAAACAAATTACG+AGG - chr4.2:3890605-3890624 MS.gene06120:intron 35.0%
AGATATGGTCTTTATACGTG+AGG - chr4.2:3890283-3890302 MS.gene06120:intron 35.0%
AGTAAATGGGTCAGATATTC+CGG + chr4.2:3889769-3889788 None:intergenic 35.0%
ATAACTATAATCTCCGCTTC+AGG + chr4.2:3889008-3889027 None:intergenic 35.0%
ATAATTAGCAAGAACAGGCA+GGG + chr4.2:3891183-3891202 None:intergenic 35.0%
ATCAACGACCAAGTCAAAAA+TGG + chr4.2:3891823-3891842 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4.2:3889937-3889956 MS.gene06120:intron 35.0%
CAATGTTCTCTATTTGTGCA+TGG - chr4.2:3891591-3891610 MS.gene06120:CDS 35.0%
CCAAAGAATCAATACTTAGG+GGG + chr4.2:3891782-3891801 None:intergenic 35.0%
CGAAGAAAAAGAGGTGATAA+GGG + chr4.2:3892163-3892182 None:intergenic 35.0%
CTAGTTACACTTCCAAGTTT+CGG - chr4.2:3890704-3890723 MS.gene06120:intron 35.0%
CTGCCAAAGAATCAATACTT+AGG + chr4.2:3891785-3891804 None:intergenic 35.0%
GATGAAGAAGATGGTTGAAA+CGG - chr4.2:3889606-3889625 MS.gene06120:intron 35.0%
GCCAAAGAATCAATACTTAG+GGG + chr4.2:3891783-3891802 None:intergenic 35.0%
GGTTAAATACCTAATCGGAT+CGG - chr4.2:3888767-3888786 MS.gene06120:CDS 35.0%
GTTCCAAATCGAAGAAAAAG+AGG + chr4.2:3892172-3892191 None:intergenic 35.0%
TATAGTAGATGAGATCGAGA+TGG + chr4.2:3891052-3891071 None:intergenic 35.0%
TATTGTATTTACCTGGGGAA+TGG + chr4.2:3891538-3891557 None:intergenic 35.0%
TCGAAGAAAAAGAGGTGATA+AGG + chr4.2:3892164-3892183 None:intergenic 35.0%
TGAAGCGGAGATTATAGTTA+TGG - chr4.2:3889007-3889026 MS.gene06120:intron 35.0%
TTATAGCAAATGAAGTCGTG+GGG + chr4.2:3891154-3891173 None:intergenic 35.0%
! CACATTTTTGTTCCGAAACT+TGG + chr4.2:3890719-3890738 None:intergenic 35.0%
! CCCTAACTTTTCAAAAGTTG+CGG - chr4.2:3891722-3891741 MS.gene06120:intron 35.0%
! CTGCAATTTTGCCAAAACTT+TGG - chr4.2:3890234-3890253 MS.gene06120:intron 35.0%
! CTTTTCAAAAGTTGCGGTTA+TGG - chr4.2:3891728-3891747 MS.gene06120:intron 35.0%
! TCACCTCTTTTTCTTCGATT+TGG - chr4.2:3892166-3892185 MS.gene06120:intron 35.0%
! TGTTGACTAGAAACAATGCT+GGG - chr4.2:3889402-3889421 MS.gene06120:intron 35.0%
! TTGGGGTATTAAATATGTGC+AGG - chr4.2:3891270-3891289 MS.gene06120:intron 35.0%
!! ACCGCAACTTTTGAAAAGTT+AGG + chr4.2:3891726-3891745 None:intergenic 35.0%
!! CAAAGTTTTGGCAAAATTGC+AGG + chr4.2:3890236-3890255 None:intergenic 35.0%
!! CCGCAACTTTTGAAAAGTTA+GGG + chr4.2:3891725-3891744 None:intergenic 35.0%
!! CGCAACTTTTGAAAAGTTAG+GGG + chr4.2:3891724-3891743 None:intergenic 35.0%
!! GCAACTTTTGAAAAGTTAGG+GGG + chr4.2:3891723-3891742 None:intergenic 35.0%
!! GCTTGCTGGCATTTTTAAAT+TGG - chr4.2:3891910-3891929 MS.gene06120:intron 35.0%
!! TGAGTTCATTTCTAGTGACT+CGG - chr4.2:3892443-3892462 MS.gene06120:CDS 35.0%
!!! CTTGTTTTGGGTCAAAGTTT+TGG - chr4.2:3891401-3891420 MS.gene06120:intron 35.0%
AAAAATGCGGAGGAAACAAG+AGG - chr4.2:3888963-3888982 MS.gene06120:intron 40.0%
AACAGAAGAGAAGAAAGGAG+AGG + chr4.2:3892398-3892417 None:intergenic 40.0%
AACCGAATCCAACATCAAGA+AGG + chr4.2:3892271-3892290 None:intergenic 40.0%
ACATACATGAGGAGATTGAG+AGG + chr4.2:3889098-3889117 None:intergenic 40.0%
ACCAAGTCAAAAATGGACCA+GGG + chr4.2:3891816-3891835 None:intergenic 40.0%
AGAAAAAGAGGTGATAAGGG+TGG + chr4.2:3892160-3892179 None:intergenic 40.0%
AGAGGAAGATTAGTGGTTGT+GGG + chr4.2:3891992-3892011 None:intergenic 40.0%
AGTAAACCAACCGTGTATTG+CGG + chr4.2:3889674-3889693 None:intergenic 40.0%
ATAAGGGTGGAGGCTTATTA+CGG + chr4.2:3892147-3892166 None:intergenic 40.0%
CACCTTCTTGATGTTGGATT+CGG - chr4.2:3892266-3892285 MS.gene06120:CDS 40.0%
CATACATGAGGAGATTGAGA+GGG + chr4.2:3889097-3889116 None:intergenic 40.0%
CATATCTCTTCCGAGTTACA+TGG + chr4.2:3890270-3890289 None:intergenic 40.0%
CATGTAACTCGGAAGAGATA+TGG - chr4.2:3890268-3890287 MS.gene06120:intron 40.0%
CTCATATATGCCGCAACAAA+AGG - chr4.2:3889716-3889735 MS.gene06120:intron 40.0%
CTGCACTGCAGACATAAAAA+AGG + chr4.2:3891429-3891448 None:intergenic 40.0%
GCCAGTAATACCATGTAACT+CGG - chr4.2:3890257-3890276 MS.gene06120:intron 40.0%
GGAGAAAGAACAAGTAAGTC+TGG + chr4.2:3892223-3892242 None:intergenic 40.0%
GGTGAAGGAAGAAGAAAGAA+CGG + chr4.2:3892301-3892320 None:intergenic 40.0%
GTAAATGGGTCAGATATTCC+GGG + chr4.2:3889768-3889787 None:intergenic 40.0%
GTGAAAACGAGTAACGAAGT+TGG + chr4.2:3889063-3889082 None:intergenic 40.0%
TAATTAGCAAGAACAGGCAG+GGG + chr4.2:3891182-3891201 None:intergenic 40.0%
TCCGAGTTACATGGTATTAC+TGG + chr4.2:3890261-3890280 None:intergenic 40.0%
! CACTGGTTAAGGCCTTTAAA+TGG - chr4.2:3890464-3890483 MS.gene06120:intron 40.0%
! CTGTTGACTAGAAACAATGC+TGG - chr4.2:3889401-3889420 MS.gene06120:intron 40.0%
! GTATTACTGGCCCAAAGTTT+TGG + chr4.2:3890248-3890267 None:intergenic 40.0%
! GTTACTCGTTTTCACTCCAT+CGG - chr4.2:3889068-3889087 MS.gene06120:intron 40.0%
!! ACGTGAGGTGTTGTTACTAT+AGG - chr4.2:3890298-3890317 MS.gene06120:intron 40.0%
!! CCCCCTAAGTATTGATTCTT+TGG - chr4.2:3891779-3891798 MS.gene06120:intron 40.0%
!! TTCTTCGATTTGGAACTGCA+AGG - chr4.2:3892176-3892195 MS.gene06120:intron 40.0%
AAAAGAGGTGATAAGGGTGG+AGG + chr4.2:3892157-3892176 None:intergenic 45.0%
AAATACCTAATCGGATCGGC+TGG - chr4.2:3888771-3888790 MS.gene06120:CDS 45.0%
AGAAGGGAGAGGAAGATTAG+TGG + chr4.2:3891999-3892018 None:intergenic 45.0%
AGGAGAAGGGAGAGGAAAAA+GGG + chr4.2:3892067-3892086 None:intergenic 45.0%
ATCATAACAGGTGGTACGTC+AGG - chr4.2:3888870-3888889 MS.gene06120:intron 45.0%
CAACATCAAGAAGGTGAGCA+AGG + chr4.2:3892262-3892281 None:intergenic 45.0%
CAAGTCAAAAATGGACCAGG+GGG + chr4.2:3891814-3891833 None:intergenic 45.0%
CCAAGTCAAAAATGGACCAG+GGG + chr4.2:3891815-3891834 None:intergenic 45.0%
CTCGTTAGTGTGGAAAACGT+TGG + chr4.2:3890923-3890942 None:intergenic 45.0%
CTTGCTCACCTTCTTGATGT+TGG - chr4.2:3892260-3892279 MS.gene06120:CDS 45.0%
GAAGATGGTTGAAACGGCAA+AGG - chr4.2:3889612-3889631 MS.gene06120:intron 45.0%
GACCAAGTCAAAAATGGACC+AGG + chr4.2:3891817-3891836 None:intergenic 45.0%
GAGAGGAAGATTAGTGGTTG+TGG + chr4.2:3891993-3892012 None:intergenic 45.0%
GAGGTTGTCAGTAAGGAGAA+GGG + chr4.2:3892015-3892034 None:intergenic 45.0%
GATTTGGATCCAAAACCGCT+TGG + chr4.2:3888798-3888817 None:intergenic 45.0%
GCGGCATATATGAGCCAAAT+AGG + chr4.2:3889710-3889729 None:intergenic 45.0%
GCGTAGTGTAGTGTAGTGTT+TGG + chr4.2:3890793-3890812 None:intergenic 45.0%
GGAAGGAAGAGTGGTGATAA+GGG + chr4.2:3892105-3892124 None:intergenic 45.0%
GTGAAGGCTTTCTTACAGGT+TGG - chr4.2:3891362-3891381 MS.gene06120:intron 45.0%
TAGTGGTTGTGGGAGAAGAA+GGG + chr4.2:3891982-3892001 None:intergenic 45.0%
TGACGTACCACCTGTTATGA+TGG + chr4.2:3888871-3888890 None:intergenic 45.0%
TGGAAGGAAGAGTGGTGATA+AGG + chr4.2:3892106-3892125 None:intergenic 45.0%
TTAGTGGTTGTGGGAGAAGA+AGG + chr4.2:3891983-3892002 None:intergenic 45.0%
TTGAAACGGCAAAGGAGACA+GGG - chr4.2:3889620-3889639 MS.gene06120:intron 45.0%
! AAGTCTGGCTCAGTTCAAGT+CGG + chr4.2:3892208-3892227 None:intergenic 45.0%
! CGATTTGGAACTGCAAGGAT+GGG - chr4.2:3892181-3892200 MS.gene06120:intron 45.0%
! CTTGATGTTGGATTCGGTTC+TGG - chr4.2:3892272-3892291 MS.gene06120:CDS 45.0%
! GGGAATGGTCTTTAAGAGCT+TGG + chr4.2:3891523-3891542 None:intergenic 45.0%
! GTGAAAAACCAAACTGGCTC+AGG - chr4.2:3889943-3889962 MS.gene06120:CDS 45.0%
!! AGAATCCTTAAAGAGTGCCC+CGG - chr4.2:3890567-3890586 MS.gene06120:intron 45.0%
!! AGGCTTTCTTACAGGTTGGT+AGG - chr4.2:3891366-3891385 MS.gene06120:intron 45.0%
!! GCAATACACGGTTGGTTTAC+TGG - chr4.2:3889673-3889692 MS.gene06120:intron 45.0%
!! TCGATTTGGAACTGCAAGGA+TGG - chr4.2:3892180-3892199 MS.gene06120:intron 45.0%
!! TTATGATGGCGGTGATGGAA+CGG + chr4.2:3888857-3888876 None:intergenic 45.0%
!! AATTTAATTAATTAATATTG+TGG - chr4.2:3889553-3889572 MS.gene06120:intron 5.0%
!! TTTATCAATTTAATATATTA+AGG + chr4.2:3890379-3890398 None:intergenic 5.0%
AACGCAGTTCACAGTCACGT+TGG + chr4.2:3891305-3891324 None:intergenic 50.0%
AACGTGTCGTCCGCAATACA+CGG - chr4.2:3889661-3889680 MS.gene06120:intron 50.0%
AAGAAAGCCTTCACGCTCTC+TGG + chr4.2:3891356-3891375 None:intergenic 50.0%
AAGAGTGGTGATAAGGGTGG+AGG + chr4.2:3892099-3892118 None:intergenic 50.0%
AAGGGTGGAGGTTGTCAGTA+AGG + chr4.2:3892022-3892041 None:intergenic 50.0%
ACAGGTGGTACGTCAGGAAT+CGG - chr4.2:3888876-3888895 MS.gene06120:intron 50.0%
ACGGATCAGATGACGATGGA+AGG + chr4.2:3892122-3892141 None:intergenic 50.0%
ACTGTGAACTGCGTTCATCC+GGG - chr4.2:3891310-3891329 MS.gene06120:intron 50.0%
AGATTATACTCCCTCCGTCC+CGG + chr4.2:3889973-3889992 None:intergenic 50.0%
AGGAAGAGTGGTGATAAGGG+TGG + chr4.2:3892102-3892121 None:intergenic 50.0%
AGGAGACAGGGATACAAGGA+AGG - chr4.2:3889632-3889651 MS.gene06120:intron 50.0%
ATCACCGCCATCATAACAGG+TGG - chr4.2:3888861-3888880 MS.gene06120:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4.2:3889764-3889783 None:intergenic 50.0%
CAAGGCGGAATCAAAGTGGA+GGG + chr4.2:3892244-3892263 None:intergenic 50.0%
CACGTGGCACCAAACATAAG+GGG + chr4.2:3891861-3891880 None:intergenic 50.0%
CATCAAGAAGGTGAGCAAGG+CGG + chr4.2:3892259-3892278 None:intergenic 50.0%
CCACGTGGCACCAAACATAA+GGG + chr4.2:3891862-3891881 None:intergenic 50.0%
CGTACCACCTGTTATGATGG+CGG + chr4.2:3888868-3888887 None:intergenic 50.0%
CTAGCTGAACACTCGTCTCT+GGG - chr4.2:3890047-3890066 MS.gene06120:intron 50.0%
GAAATGTTAACCAGTGCCCC+GGG - chr4.2:3890441-3890460 MS.gene06120:intron 50.0%
GAACAAGTCACCGAAACCTG+CGG - chr4.2:3888825-3888844 MS.gene06120:intron 50.0%
GACTGTGAACTGCGTTCATC+CGG - chr4.2:3891309-3891328 MS.gene06120:intron 50.0%
GAGATTGAGAGGGAAACCGA+TGG + chr4.2:3889087-3889106 None:intergenic 50.0%
GAGCGTGAAGGCTTTCTTAC+AGG - chr4.2:3891358-3891377 MS.gene06120:intron 50.0%
GAGGAGAAGGGAGAGGAAAA+AGG + chr4.2:3892068-3892087 None:intergenic 50.0%
GATGACGATGGAAGGAAGAG+TGG + chr4.2:3892114-3892133 None:intergenic 50.0%
GCAAAGGAGACAGGGATACA+AGG - chr4.2:3889628-3889647 MS.gene06120:intron 50.0%
GCACCAAACATAAGGGGTCT+GGG + chr4.2:3891855-3891874 None:intergenic 50.0%
GCGTAGCATGAAAAATGCGG+AGG - chr4.2:3888953-3888972 MS.gene06120:intron 50.0%
GCTCTTAAAGACCATTCCCC+AGG - chr4.2:3891524-3891543 MS.gene06120:intron 50.0%
GGAAATGTTAACCAGTGCCC+CGG - chr4.2:3890440-3890459 MS.gene06120:intron 50.0%
GGAGAAGGGAGAGGAAAAAG+GGG + chr4.2:3892066-3892085 None:intergenic 50.0%
GGAGGTTGTCAGTAAGGAGA+AGG + chr4.2:3892016-3892035 None:intergenic 50.0%
GGCGCGTAGCATGAAAAATG+CGG - chr4.2:3888950-3888969 MS.gene06120:intron 50.0%
GTGGAAAACGTTGGCGAGTT+TGG + chr4.2:3890914-3890933 None:intergenic 50.0%
GTTGAAACGGCAAAGGAGAC+AGG - chr4.2:3889619-3889638 MS.gene06120:intron 50.0%
TAAAGGCCTTAACCAGTGCC+CGG + chr4.2:3890462-3890481 None:intergenic 50.0%
TAGCTGAACACTCGTCTCTG+GGG - chr4.2:3890048-3890067 MS.gene06120:intron 50.0%
TCCACGTGGCACCAAACATA+AGG + chr4.2:3891863-3891882 None:intergenic 50.0%
TCCATCACCGCCATCATAAC+AGG - chr4.2:3888858-3888877 MS.gene06120:intron 50.0%
TGAGCAAGGCGGAATCAAAG+TGG + chr4.2:3892248-3892267 None:intergenic 50.0%
TGCGAGAAAGCTCGTTAGTG+TGG + chr4.2:3890933-3890952 None:intergenic 50.0%
TGGCGACGTCATCTCCTATT+TGG - chr4.2:3889693-3889712 MS.gene06120:intron 50.0%
TGTCAGTAAGGAGAAGGGAG+AGG + chr4.2:3892010-3892029 None:intergenic 50.0%
! AGAAGAGCACGCAATCTCTG+AGG - chr4.2:3889433-3889452 MS.gene06120:intron 50.0%
! CAAACTGGCTCAGGTATTCC+GGG - chr4.2:3889952-3889971 MS.gene06120:CDS 50.0%
! CCAAACTGGCTCAGGTATTC+CGG - chr4.2:3889951-3889970 MS.gene06120:CDS 50.0%
! GCATTTTTCATGCTACGCGC+CGG + chr4.2:3888951-3888970 None:intergenic 50.0%
! GGAAAGAGCATAAGCACGTG+TGG + chr4.2:3890893-3890912 None:intergenic 50.0%
!! AATCCTTAAAGAGTGCCCCG+GGG - chr4.2:3890569-3890588 MS.gene06120:intron 50.0%
!! ACCTGTTATGATGGCGGTGA+TGG + chr4.2:3888862-3888881 None:intergenic 50.0%
!! CCCCTGGTCCATTTTTGACT+TGG - chr4.2:3891812-3891831 MS.gene06120:intron 50.0%
!! GAATCCTTAAAGAGTGCCCC+GGG - chr4.2:3890568-3890587 MS.gene06120:intron 50.0%
!! GAGCACCGAGTTTCTGATGA+AGG - chr4.2:3892537-3892556 MS.gene06120:CDS 50.0%
!! GCAGGTTTCGGTGACTTGTT+CGG + chr4.2:3888826-3888845 None:intergenic 50.0%
!! TGACTTGGTCGTTGATGACG+TGG - chr4.2:3891827-3891846 MS.gene06120:intron 50.0%
AAAGGCCTTAACCAGTGCCC+GGG + chr4.2:3890461-3890480 None:intergenic 55.0%
AGGGGTAGCAACGACGATGA+CGG + chr4.2:3892048-3892067 None:intergenic 55.0%
AGTGGTGATAAGGGTGGAGG+TGG + chr4.2:3892096-3892115 None:intergenic 55.0%
CCGGAATACCTGAGCCAGTT+TGG + chr4.2:3889954-3889973 None:intergenic 55.0%
CGAGCTTTCTCGCAGACTCA+AGG - chr4.2:3890939-3890958 MS.gene06120:intron 55.0%
CTGTGAACTGCGTTCATCCG+GGG - chr4.2:3891311-3891330 MS.gene06120:intron 55.0%
GCAAGGCGGAATCAAAGTGG+AGG + chr4.2:3892245-3892264 None:intergenic 55.0%
GCACCCAGACCCCTTATGTT+TGG - chr4.2:3891849-3891868 MS.gene06120:CDS 55.0%
GCTAGCTGAACACTCGTCTC+TGG - chr4.2:3890046-3890065 MS.gene06120:intron 55.0%
GGCACCAAACATAAGGGGTC+TGG + chr4.2:3891856-3891875 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4.2:3889760-3889779 None:intergenic 55.0%
GTCAGGAATCGGAGCGGAAA+CGG - chr4.2:3888887-3888906 MS.gene06120:intron 55.0%
GTGATAAGGGTGGAGGTGGT+CGG + chr4.2:3892092-3892111 None:intergenic 55.0%
GTGGAGGCTTATTACGGCGA+CGG + chr4.2:3892141-3892160 None:intergenic 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr4.2:3890588-3890607 None:intergenic 55.0%
TGGTACGTCAGGAATCGGAG+CGG - chr4.2:3888881-3888900 MS.gene06120:intron 55.0%
TGTCGTCCGCAATACACGGT+TGG - chr4.2:3889665-3889684 MS.gene06120:intron 55.0%
TGTGAACTGCGTTCATCCGG+GGG - chr4.2:3891312-3891331 MS.gene06120:intron 55.0%
TTCACGCTCTCTGGTGAGTC+TGG + chr4.2:3891347-3891366 None:intergenic 55.0%
TTGGACCAGCCGATCCGATT+AGG + chr4.2:3888779-3888798 None:intergenic 55.0%
! ACTCGTCTCTGGGGATTGGT+TGG - chr4.2:3890057-3890076 MS.gene06120:intron 55.0%
! AGACTCACCAGAGAGCGTGA+AGG - chr4.2:3891346-3891365 MS.gene06120:intron 55.0%
! AGGGGCGAGGGTGATTTTAC+CGG - chr4.2:3888929-3888948 MS.gene06120:intron 55.0%
! AGTGACGGAGTGTCCTGAAG+CGG - chr4.2:3888992-3889011 MS.gene06120:intron 55.0%
! GAACACTCGTCTCTGGGGAT+TGG - chr4.2:3890053-3890072 MS.gene06120:intron 55.0%
! GACTTGTTCGGCGGTGGATT+TGG + chr4.2:3888814-3888833 None:intergenic 55.0%
! GAGCACGCAATCTCTGAGGA+TGG - chr4.2:3889437-3889456 MS.gene06120:intron 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr4.2:3890589-3890608 None:intergenic 55.0%
!! ATCCTTAAAGAGTGCCCCGG+GGG - chr4.2:3890570-3890589 MS.gene06120:intron 55.0%
!! CCCTTATGTTTGGTGCCACG+TGG - chr4.2:3891859-3891878 MS.gene06120:CDS 55.0%
!! GGTTTCGGTGACTTGTTCGG+CGG + chr4.2:3888823-3888842 None:intergenic 55.0%
AACTACCACTCCCTCCGTCC+CGG - chr4.2:3889747-3889766 MS.gene06120:intron 60.0%
AAGGCCTTAACCAGTGCCCG+GGG + chr4.2:3890460-3890479 None:intergenic 60.0%
ACGGAGATCGCCGCAGGTTT+CGG + chr4.2:3888838-3888857 None:intergenic 60.0%
ACGTGTGGCGTCGTACTCAC+TGG + chr4.2:3890878-3890897 None:intergenic 60.0%
ATATTCCGGGACGGAGGGAG+TGG + chr4.2:3889755-3889774 None:intergenic 60.0%
CGTGTGGCGTCGTACTCACT+GGG + chr4.2:3890877-3890896 None:intergenic 60.0%
CTCAGGTATTCCGGGACGGA+GGG - chr4.2:3889960-3889979 MS.gene06120:CDS 60.0%
CTGGCTCAGGTATTCCGGGA+CGG - chr4.2:3889956-3889975 MS.gene06120:CDS 60.0%
CTTGTTAACGAGTGCCCCCG+GGG + chr4.2:3890587-3890606 None:intergenic 60.0%
GAGGTGGTCGGTGAGGAGAA+GGG + chr4.2:3892080-3892099 None:intergenic 60.0%
GGCGACGGATCAGATGACGA+TGG + chr4.2:3892126-3892145 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4.2:3889761-3889780 None:intergenic 60.0%
GTGTGGCGTCGTACTCACTG+GGG + chr4.2:3890876-3890895 None:intergenic 60.0%
! ATCGGATCGGCTGGTCCAAG+CGG - chr4.2:3888780-3888799 MS.gene06120:intron 60.0%
! CAACGACGATGACGGCGGAA+GGG + chr4.2:3892040-3892059 None:intergenic 60.0%
! CGCGTGTGTTGGCGAAGAGA+GGG - chr4.2:3888910-3888929 MS.gene06120:intron 60.0%
! GCGTGTGTTGGCGAAGAGAG+GGG - chr4.2:3888911-3888930 MS.gene06120:intron 60.0%
! GGTAGCAACGACGATGACGG+CGG + chr4.2:3892045-3892064 None:intergenic 60.0%
!! AGTCTGGTTCTCACGACCCC+CGG + chr4.2:3891331-3891350 None:intergenic 60.0%
!! CTTTGGCAGTTTTGGCCCCC+TGG - chr4.2:3891796-3891815 MS.gene06120:intron 60.0%
!! TCGGCTGGTCCAAGCGGTTT+TGG - chr4.2:3888786-3888805 MS.gene06120:intron 60.0%
!! TTCGGTGACTTGTTCGGCGG+TGG + chr4.2:3888820-3888839 None:intergenic 60.0%
AAGGGTGGAGGTGGTCGGTG+AGG + chr4.2:3892087-3892106 None:intergenic 65.0%
AGCGGAAACGGCGCGTGTGT+TGG - chr4.2:3888899-3888918 MS.gene06120:intron 65.0%
GATGGAACGGAGATCGCCGC+AGG + chr4.2:3888844-3888863 None:intergenic 65.0%
GCTCAGGTATTCCGGGACGG+AGG - chr4.2:3889959-3889978 MS.gene06120:CDS 65.0%
GGAGGTGGTCGGTGAGGAGA+AGG + chr4.2:3892081-3892100 None:intergenic 65.0%
GGTCGGTGAGGAGAAGGGAG+AGG + chr4.2:3892075-3892094 None:intergenic 65.0%
GTTGGCGAAGAGAGGGGCGA+GGG - chr4.2:3888917-3888936 MS.gene06120:intron 65.0%
TGTTGGCGAAGAGAGGGGCG+AGG - chr4.2:3888916-3888935 MS.gene06120:intron 65.0%
TTAACCAGTGCCCCGGGCAC+TGG - chr4.2:3890447-3890466 MS.gene06120:intron 65.0%
TTAACCAGTGCCCGGGGCAC+TGG + chr4.2:3890454-3890473 None:intergenic 65.0%
! GCAACGACGATGACGGCGGA+AGG + chr4.2:3892041-3892060 None:intergenic 65.0%
! GCGCGTGTGTTGGCGAAGAG+AGG - chr4.2:3888909-3888928 MS.gene06120:intron 65.0%
! TGCCCCCGGGGCACTCTTTA+AGG + chr4.2:3890575-3890594 None:intergenic 65.0%
!! AGTGCCCCGGGCACTGGTTA+AGG - chr4.2:3890453-3890472 MS.gene06120:intron 65.0%
! CGACGATGACGGCGGAAGGG+TGG + chr4.2:3892037-3892056 None:intergenic 70.0%
! CGATGACGGCGGAAGGGTGG+AGG + chr4.2:3892034-3892053 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 3888756 3892563 3888756 ID=MS.gene06120
chr4.2 mRNA 3888756 3892563 3888756 ID=MS.gene06120.t1;Parent=MS.gene06120
chr4.2 exon 3892208 3892563 3892208 ID=MS.gene06120.t1.exon1;Parent=MS.gene06120.t1
chr4.2 CDS 3892208 3892563 3892208 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2 exon 3891828 3891907 3891828 ID=MS.gene06120.t1.exon2;Parent=MS.gene06120.t1
chr4.2 CDS 3891828 3891907 3891828 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2 exon 3891582 3891738 3891582 ID=MS.gene06120.t1.exon3;Parent=MS.gene06120.t1
chr4.2 CDS 3891582 3891738 3891582 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2 exon 3890359 3890440 3890359 ID=MS.gene06120.t1.exon4;Parent=MS.gene06120.t1
chr4.2 CDS 3890359 3890440 3890359 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2 exon 3889940 3890027 3889940 ID=MS.gene06120.t1.exon5;Parent=MS.gene06120.t1
chr4.2 CDS 3889940 3890027 3889940 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2 exon 3889774 3889820 3889774 ID=MS.gene06120.t1.exon6;Parent=MS.gene06120.t1
chr4.2 CDS 3889774 3889820 3889774 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
chr4.2 exon 3888756 3888797 3888756 ID=MS.gene06120.t1.exon7;Parent=MS.gene06120.t1
chr4.2 CDS 3888756 3888797 3888756 ID=cds.MS.gene06120.t1;Parent=MS.gene06120.t1
Gene Sequence

>MS.gene06120

ATGCTTGAAACGGTTAAATACCTAATCGGATCGGCTGGTCCAAGCGGTTTTGGATCCAAATCCACCGCCGAACAAGTCACCGAAACCTGCGGCGATCTCCGTTCCATCACCGCCATCATAACAGGTGGTACGTCAGGAATCGGAGCGGAAACGGCGCGTGTGTTGGCGAAGAGAGGGGCGAGGGTGATTTTACCGGCGCGTAGCATGAAAAATGCGGAGGAAACAAGAGGAAGAATAGTGACGGAGTGTCCTGAAGCGGAGATTATAGTTATGGCACTTGATCTCAGTTCTCTCAATTCTGTTACCAACTTCGTTACTCGTTTTCACTCCATCGGTTTCCCTCTCAATCTCCTCATGTATGTATATGTATATACTCTCATTTCATGCAATTATGTTTTATCACATACACACATCGACAGTATTAATAATTTGATAAAAATAACATAATTCATTATAATTTCATGTGTTGGTGTCGGCGTCAGACATTAACACAAACATTAACACATGTACGTCTTCCATTAGAAGTGTCGAGATTTATTTATCATTTTTAATGATCTAATCTAATCTAATACAGTACATAAGTAGTACAGTATATATTTTTTTCGTTCTTTGACCATATTTATTTATTTGAATTTGAATGATTGGCTGTTGACTAGAAACAATGCTGGGAAGTTTGCAGAAGAGCACGCAATCTCTGAGGATGGAGTTGAAATGACCTTTGCCACTAATTATTTAGGTGAGTAAGATTACAACAAATTAATTTTTATATATTTTTGTTATTTGATGGGTATATGTATAATTTAATTAATTAATATTGTGGTGCAGGTCATTTTCTGTTGACAAAAATGTTGATGAAGAAGATGGTTGAAACGGCAAAGGAGACAGGGATACAAGGAAGGATAGTGAACGTGTCGTCCGCAATACACGGTTGGTTTACTGGCGACGTCATCTCCTATTTGGCTCATATATGCCGCAACAAAAGGTGACAAATAACTACCACTCCCTCCGTCCCGGAATATCTGACCCATTTACTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACTCTAATTAATATTACTTTCATCATTCTCAATTCAATATATTCCACTTTCCCCTTTATTTATACATTTTTCTTAATCTGTGTGAAAAACCAAACTGGCTCAGGTATTCCGGGACGGAGGGAGTATAATCTTATCAATTTATTTGACTTATTCGTTATTACACCTTGAATGAAATTTTGGTTAAGCTAGCTGAACACTCGTCTCTGGGGATTGGTTGGATATGTATTCACATTGTTATAAAGAAGGTCATATCATATTTTTATATTAATTTATTTTAAAATTAGTTTTAATTTTGCCACAAGAGTATGTATATATACCCAACTATCTAAGAATTTACCTTTTGTCCAAAAAAAAAAATTACCTTTTGTTAACCTGCAATTTTGCCAAAACTTTGGGCCAGTAATACCATGTAACTCGGAAGAGATATGGTCTTTATACGTGAGGTGTTGTTACTATAGGCGTTAAATATATTAGAATTGCAAACATATCTCTAGTGTATTCTTTTGTTAGTAATCCTTAATATATTAAATTGATAAAAAAATATATTTGAGGATTAAATTGGCTATCATAAAACAAAGGGAAATGTTAACCAGTGCCCCGGGCACTGGTTAAGGCCTTTAAATGGTAACTTATCATGAAAATATGTGTAATCAATGCATCGGAAATCGAAATCCTTGACTTTTTTATAAAATTATTTCTTCTTTTAGAATCCTTAAAGAGTGCCCCGGGGGCACTCGTTAACAAGACCCTAAAACAAATTACGAGGACTACAATGACTAATAAAAATTACTACCATTTATGAATGTGTTTGTAGTTTCAATGCATTCAAGGATCAATGACATCTAGTTACACTTCCAAGTTTCGGAACAAAAATGTGATTTTCACGTAAACAAGCCGTACTTGAAATGAAAATGATGTGATATGTTTACCAAACACTACACTACACTACGCTACATTTGTGTTTCTGTTTACTAATTTGTTGGATTGAAATATGTTTGTGTTGTGTGATGTCCCCAGTGAGTACGACGCCACACGTGCTTATGCTCTTTCCAAACTCGCCAACGTTTTCCACACTAACGAGCTTTCTCGCAGACTCAAGGTAACATATAATTTCACTACACTATCTATTCATTCATCTTTTATGGAGTATTTTATTTAATTTAATTAACTATAATAACATGCAATATCCATCTCGATCTCATCTACTATAGTATAGTAGTATCATCTACATATATCCTATCCATATTTAAAAGTGAAATTTGTTTGTTTGCTATGTCAGTAATCAAATGCCCCACGACTTCATTTGCTATAATTTAACCCCTGCCTGTTCTTGCTAATTATTTCTCCAGTTTATATAGTTTATTTTATTAATGAGCACGTATAAATAAATAAAATACTAGTAAATAATTTGGGGTATTAAATATGTGCAGGAAATGGATGCCAACGTGACTGTGAACTGCGTTCATCCGGGGGTCGTGAGAACCAGACTCACCAGAGAGCGTGAAGGCTTTCTTACAGGTTGGTAGGAACAATAACACTCTTGTTTTGGGTCAAAGTTTTGGTTCCTTTTTTATGTCTGCAGTGCAGCCGTTAATTGATTTCAGAATTTTCCTTTTCTATTCTAAAATCAAATGCAGATTTAGTTTTCTTCTTGGCTTCCAAGCTCTTAAAGACCATTCCCCAGGTAAATACAATACACTATAGTAGAACTTGTACTATAATATATATTCAATGTTCTCTATTTGTGCATGGGTAAAGTTTAATTTGGACCCATTGAAAAATTGGTCCAACTTGACCAATTAACTTAAACCATTGATCAAATAAGATGTATAGATTTTAGGCTTAATTGCACTTTTGGCCCCCTAACTTTTCAAAAGTTGCGGTTATGGTCCCCTAACTAATTTAAATACAAAACAGCCCCCTAAGTATTGATTCTTTGGCAGTTTTGGCCCCCTGGTCCATTTTTGACTTGGTCGTTGATGACGTGGCACCCAGACCCCTTATGTTTGGTGCCACGTGGATATTATTTATTTTTATTTTTTTTAAAAGCTTGCTGGCATTTTTAAATTGGGGAAGAAATTAAAAAAAAAAAATTAGTTTCTTCTTCTTCTCACGTTCCCTTCTTCTCCCACAACCACTAATCTTCCTCTCCCTTCTCCTTACTGACAACCTCCACCCTTCCGCCGTCATCGTCGTTGCTACCCCTTTTTCCTCTCCCTTCTCCTCACCGACCACCTCCACCCTTATCACCACTCTTCCTTCCATCGTCATCTGATCCGTCGCCGTAATAAGCCTCCACCCTTATCACCTCTTTTTCTTCGATTTGGAACTGCAAGGATGGGTCCGACTTGAACTGAGCCAGACTTACTTGTTCTTTCTCCCTCCACTTTGATTCCGCCTTGCTCACCTTCTTGATGTTGGATTCGGTTCTGGACTCCGTTCTTTCTTCTTCCTTCACCGATTTGTCTTCATTTCTTTAATTTTCAAGGTTGTTTGATGTTGTATAGATCGGCTTATGAATCAATTACAACTTCCTCTCCTTTCTTCTCTTCTGTTAGATTCGGTTACAAGCTTGTGTTTGTGAGTTCATTTCTAGTGACTCGGTTTGTATTGAACAGATTGAAAACGTGTGTGTGTTATGAACAACTTTGTAATGTCAGATGTATGCTCATTGTGAGCACCGAGTTTCTGATGAAGGTTGA
Protein sequence

>MS.gene06120.t1

MLETVKYLIGSAGPSGFGSKSTAEQVTETCGDLRSITAIITGGTSGIGAETARVLAKRGARVILPARSMKNAEETRGRIVTECPEAEIIVMALDLSSLNSVTNFVTRFHSIGFPLNLLINNAGKFAEEHAISEDGVEMTFATNYLGHFLLTKMLMKKMVETAKETGIQGRIVNVSSAIHGWFTGDVISYLAHICRNKSEYDATRAYALSKLANVFHTNELSRRLKEMDANVTVNCVHPGVVRTRLTREREGFLTDLVFFLASKLLKTIPQMYAHCEHRVSDEG