Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035607.t1 | XP_003620324.1 | 94.2 | 363 | 10 | 1 | 24 | 386 | 24 | 375 | 1.20E-192 | 683.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035607.t1 | F4JJR8 | 69.1 | 363 | 99 | 2 | 24 | 386 | 20 | 369 | 3.7e-147 | 523.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035607.t1 | G7KLR3 | 94.2 | 363 | 10 | 1 | 24 | 386 | 24 | 375 | 8.4e-193 | 683.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035607.t1 | MTR_6g081020 | 92.651 | 381 | 16 | 2 | 11 | 391 | 12 | 380 | 0.0 | 676 |
MS.gene035607.t1 | MTR_4g130620 | 74.101 | 278 | 59 | 3 | 421 | 695 | 4 | 271 | 3.82e-139 | 410 |
MS.gene035607.t1 | MTR_4g130630 | 63.534 | 266 | 47 | 3 | 398 | 663 | 3 | 218 | 5.85e-107 | 324 |
MS.gene035607.t1 | MTR_1g100395 | 34.586 | 266 | 147 | 8 | 62 | 320 | 30 | 275 | 7.17e-31 | 124 |
MS.gene035607.t1 | MTR_1g100335 | 33.829 | 269 | 145 | 7 | 62 | 320 | 30 | 275 | 6.77e-30 | 120 |
MS.gene035607.t1 | MTR_8g098415 | 33.585 | 265 | 151 | 6 | 62 | 320 | 30 | 275 | 9.35e-30 | 120 |
MS.gene035607.t1 | MTR_8g098415 | 30.769 | 312 | 180 | 8 | 62 | 367 | 30 | 311 | 1.21e-29 | 120 |
MS.gene035607.t1 | MTR_1g100305 | 33.829 | 269 | 145 | 7 | 62 | 320 | 30 | 275 | 7.19e-29 | 118 |
MS.gene035607.t1 | MTR_1g100335 | 36.239 | 218 | 123 | 5 | 62 | 272 | 30 | 238 | 1.82e-28 | 115 |
MS.gene035607.t1 | MTR_7g099850 | 30.650 | 323 | 173 | 9 | 60 | 368 | 33 | 318 | 1.92e-28 | 117 |
MS.gene035607.t1 | MTR_1g100335 | 36.239 | 218 | 123 | 5 | 62 | 272 | 30 | 238 | 2.37e-28 | 115 |
MS.gene035607.t1 | MTR_6g053550 | 33.083 | 266 | 154 | 7 | 62 | 320 | 38 | 286 | 8.99e-27 | 112 |
MS.gene035607.t1 | MTR_1g100315 | 30.189 | 318 | 176 | 11 | 62 | 368 | 30 | 312 | 9.98e-27 | 111 |
MS.gene035607.t1 | MTR_8g098415 | 36.364 | 198 | 113 | 3 | 62 | 254 | 30 | 219 | 2.14e-26 | 108 |
MS.gene035607.t1 | MTR_8g099995 | 29.193 | 322 | 183 | 9 | 59 | 368 | 33 | 321 | 4.21e-26 | 110 |
MS.gene035607.t1 | MTR_1g068970 | 32.245 | 245 | 145 | 5 | 61 | 292 | 34 | 270 | 5.01e-26 | 109 |
MS.gene035607.t1 | MTR_3g077410 | 28.840 | 319 | 180 | 10 | 62 | 368 | 38 | 321 | 1.10e-25 | 108 |
MS.gene035607.t1 | MTR_4g105310 | 31.208 | 298 | 169 | 12 | 51 | 331 | 40 | 318 | 3.37e-25 | 108 |
MS.gene035607.t1 | MTR_4g105310 | 33.906 | 233 | 126 | 8 | 51 | 271 | 40 | 256 | 1.22e-24 | 104 |
MS.gene035607.t1 | MTR_6g053600 | 35.808 | 229 | 124 | 7 | 62 | 279 | 24 | 240 | 8.39e-23 | 99.8 |
MS.gene035607.t1 | MTR_8g098415 | 30.380 | 237 | 140 | 6 | 90 | 320 | 1 | 218 | 4.55e-19 | 87.8 |
MS.gene035607.t1 | MTR_3g009190 | 26.519 | 362 | 203 | 15 | 34 | 370 | 36 | 359 | 1.20e-18 | 89.0 |
MS.gene035607.t1 | MTR_3g009190 | 26.519 | 362 | 203 | 15 | 34 | 370 | 54 | 377 | 1.97e-18 | 88.6 |
MS.gene035607.t1 | MTR_6g453040 | 25.967 | 362 | 205 | 15 | 34 | 370 | 14 | 337 | 1.81e-17 | 85.1 |
MS.gene035607.t1 | MTR_1g068970 | 29.570 | 186 | 116 | 4 | 120 | 292 | 20 | 203 | 1.46e-15 | 77.8 |
MS.gene035607.t1 | MTR_5g064480 | 25.490 | 255 | 158 | 7 | 426 | 679 | 10 | 233 | 9.46e-15 | 76.3 |
MS.gene035607.t1 | MTR_2g079710 | 23.599 | 339 | 200 | 12 | 63 | 370 | 88 | 398 | 1.95e-14 | 76.3 |
MS.gene035607.t1 | MTR_3g091070 | 25.138 | 362 | 190 | 17 | 34 | 370 | 14 | 319 | 2.08e-14 | 75.5 |
MS.gene035607.t1 | MTR_3g074900 | 29.098 | 244 | 141 | 7 | 426 | 668 | 10 | 222 | 5.94e-14 | 73.9 |
MS.gene035607.t1 | MTR_6g453040 | 29.741 | 232 | 138 | 9 | 34 | 251 | 36 | 256 | 7.58e-14 | 73.2 |
MS.gene035607.t1 | MTR_3g009190 | 25.836 | 329 | 186 | 12 | 65 | 370 | 65 | 358 | 1.39e-13 | 73.6 |
MS.gene035607.t1 | MTR_5g098180 | 27.170 | 265 | 143 | 7 | 426 | 690 | 10 | 224 | 1.45e-13 | 71.6 |
MS.gene035607.t1 | MTR_6g041980 | 28.022 | 182 | 117 | 5 | 64 | 243 | 69 | 238 | 3.90e-13 | 70.5 |
MS.gene035607.t1 | MTR_6g453040 | 30.348 | 201 | 120 | 8 | 34 | 225 | 36 | 225 | 4.43e-13 | 70.1 |
MS.gene035607.t1 | MTR_6g041980 | 26.923 | 208 | 137 | 6 | 64 | 269 | 69 | 263 | 1.88e-12 | 69.7 |
MS.gene035607.t1 | MTR_7g076660 | 26.104 | 249 | 132 | 8 | 64 | 271 | 10 | 247 | 2.75e-12 | 68.6 |
MS.gene035607.t1 | MTR_7g076660 | 26.104 | 249 | 132 | 8 | 64 | 271 | 9 | 246 | 2.82e-12 | 68.6 |
MS.gene035607.t1 | MTR_8g031960 | 28.244 | 262 | 122 | 9 | 64 | 271 | 10 | 259 | 3.29e-12 | 68.6 |
MS.gene035607.t1 | MTR_8g032010 | 24.521 | 261 | 137 | 5 | 64 | 273 | 9 | 260 | 4.64e-12 | 67.8 |
MS.gene035607.t1 | MTR_2g018910 | 26.104 | 249 | 152 | 6 | 419 | 666 | 21 | 238 | 1.25e-11 | 67.0 |
MS.gene035607.t1 | MTR_8g031980 | 28.261 | 184 | 103 | 3 | 56 | 216 | 1 | 178 | 2.33e-11 | 65.9 |
MS.gene035607.t1 | MTR_2g018940 | 24.900 | 249 | 155 | 5 | 419 | 666 | 18 | 235 | 2.36e-11 | 66.2 |
MS.gene035607.t1 | MTR_8g032000 | 25.475 | 263 | 132 | 7 | 64 | 273 | 9 | 260 | 4.07e-11 | 65.1 |
MS.gene035607.t1 | MTR_8g031940 | 26.718 | 262 | 131 | 7 | 64 | 273 | 9 | 261 | 4.79e-11 | 64.7 |
MS.gene035607.t1 | MTR_1g051165 | 26.692 | 266 | 163 | 10 | 55 | 306 | 10 | 257 | 9.30e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035607.t1 | AT4G27760 | 67.617 | 386 | 108 | 3 | 1 | 386 | 1 | 369 | 2.79e-180 | 518 |
MS.gene035607.t1 | AT5G53090 | 68.767 | 365 | 101 | 2 | 22 | 386 | 17 | 368 | 1.09e-169 | 491 |
MS.gene035607.t1 | AT5G53100 | 64.499 | 369 | 119 | 2 | 19 | 386 | 2 | 359 | 3.98e-154 | 451 |
MS.gene035607.t1 | AT5G57900 | 48.201 | 278 | 132 | 5 | 419 | 695 | 1 | 267 | 1.32e-79 | 256 |
MS.gene035607.t1 | AT4G30640 | 47.826 | 276 | 130 | 5 | 426 | 698 | 20 | 284 | 4.61e-75 | 244 |
MS.gene035607.t1 | AT4G23420 | 34.752 | 282 | 161 | 8 | 62 | 331 | 30 | 300 | 2.89e-31 | 125 |
MS.gene035607.t1 | AT4G23420 | 34.752 | 282 | 161 | 8 | 62 | 331 | 30 | 300 | 2.89e-31 | 125 |
MS.gene035607.t1 | AT4G23420 | 34.752 | 282 | 161 | 8 | 62 | 331 | 47 | 317 | 3.02e-31 | 125 |
MS.gene035607.t1 | AT4G23430 | 34.082 | 267 | 150 | 7 | 62 | 321 | 30 | 277 | 2.13e-30 | 122 |
MS.gene035607.t1 | AT4G23420 | 36.250 | 240 | 133 | 6 | 62 | 290 | 30 | 260 | 7.20e-29 | 116 |
MS.gene035607.t1 | AT4G23420 | 37.788 | 217 | 119 | 5 | 62 | 271 | 30 | 237 | 7.44e-29 | 116 |
MS.gene035607.t1 | AT4G23430 | 34.831 | 267 | 146 | 8 | 62 | 321 | 30 | 275 | 7.78e-29 | 118 |
MS.gene035607.t1 | AT2G37540 | 37.615 | 218 | 118 | 5 | 62 | 271 | 34 | 241 | 1.50e-28 | 115 |
MS.gene035607.t1 | AT2G37540 | 31.481 | 324 | 178 | 9 | 62 | 377 | 34 | 321 | 2.15e-28 | 116 |
MS.gene035607.t1 | AT4G23430 | 33.712 | 264 | 145 | 8 | 62 | 321 | 30 | 267 | 9.95e-28 | 114 |
MS.gene035607.t1 | AT5G50130 | 32.292 | 288 | 170 | 10 | 58 | 332 | 33 | 308 | 6.09e-27 | 113 |
MS.gene035607.t1 | AT5G50130 | 32.746 | 284 | 165 | 10 | 58 | 324 | 33 | 307 | 2.66e-26 | 110 |
MS.gene035607.t1 | AT5G50130 | 32.982 | 285 | 164 | 11 | 58 | 324 | 33 | 308 | 2.89e-26 | 110 |
MS.gene035607.t1 | AT4G23430 | 34.470 | 264 | 141 | 9 | 62 | 321 | 30 | 265 | 3.35e-26 | 110 |
MS.gene035607.t1 | AT5G50130 | 36.036 | 222 | 125 | 7 | 58 | 271 | 33 | 245 | 4.27e-26 | 108 |
MS.gene035607.t1 | AT5G50130 | 35.747 | 221 | 126 | 6 | 58 | 271 | 33 | 244 | 4.73e-26 | 108 |
MS.gene035607.t1 | AT4G11410 | 28.889 | 315 | 186 | 8 | 62 | 369 | 30 | 313 | 4.79e-25 | 107 |
MS.gene035607.t1 | AT4G11410 | 35.484 | 217 | 124 | 5 | 62 | 271 | 30 | 237 | 5.18e-25 | 105 |
MS.gene035607.t1 | AT5G50130 | 31.338 | 284 | 171 | 9 | 61 | 332 | 3 | 274 | 5.55e-25 | 106 |
MS.gene035607.t1 | AT5G50130 | 31.579 | 285 | 170 | 10 | 61 | 332 | 3 | 275 | 6.64e-25 | 106 |
MS.gene035607.t1 | AT5G50130 | 32.028 | 281 | 165 | 10 | 61 | 324 | 3 | 274 | 1.63e-24 | 104 |
MS.gene035607.t1 | AT5G50130 | 32.270 | 282 | 164 | 11 | 61 | 324 | 3 | 275 | 1.99e-24 | 104 |
MS.gene035607.t1 | AT1G64590 | 33.099 | 284 | 156 | 8 | 59 | 330 | 32 | 293 | 2.19e-24 | 105 |
MS.gene035607.t1 | AT4G24050 | 35.656 | 244 | 137 | 8 | 59 | 290 | 32 | 267 | 1.04e-23 | 102 |
MS.gene035607.t1 | AT4G24050 | 33.212 | 274 | 149 | 9 | 59 | 320 | 32 | 283 | 2.33e-23 | 102 |
MS.gene035607.t1 | AT5G15940 | 25.926 | 324 | 190 | 11 | 64 | 368 | 62 | 354 | 2.51e-19 | 90.9 |
MS.gene035607.t1 | AT5G15940 | 25.926 | 324 | 190 | 11 | 64 | 368 | 63 | 355 | 2.69e-19 | 90.9 |
MS.gene035607.t1 | AT5G15940 | 25.926 | 324 | 190 | 11 | 64 | 368 | 63 | 355 | 2.69e-19 | 90.9 |
MS.gene035607.t1 | AT5G15940 | 30.942 | 223 | 131 | 7 | 64 | 271 | 63 | 277 | 1.41e-18 | 87.8 |
MS.gene035607.t1 | AT5G02540 | 27.362 | 307 | 179 | 8 | 72 | 368 | 44 | 316 | 2.17e-18 | 87.4 |
MS.gene035607.t1 | AT4G05475 | 29.762 | 252 | 141 | 6 | 417 | 662 | 31 | 252 | 3.63e-16 | 80.5 |
MS.gene035607.t1 | AT4G09750 | 27.830 | 212 | 140 | 5 | 59 | 269 | 41 | 240 | 4.68e-16 | 80.5 |
MS.gene035607.t1 | AT4G05497 | 28.512 | 242 | 142 | 4 | 426 | 666 | 21 | 232 | 6.75e-16 | 78.6 |
MS.gene035607.t1 | AT5G04070 | 29.876 | 241 | 133 | 10 | 48 | 271 | 54 | 275 | 3.47e-15 | 78.2 |
MS.gene035607.t1 | AT5G54190 | 25.223 | 337 | 193 | 13 | 65 | 370 | 96 | 404 | 5.05e-15 | 78.2 |
MS.gene035607.t1 | AT4G08980 | 27.843 | 255 | 149 | 7 | 426 | 677 | 10 | 232 | 1.72e-14 | 75.5 |
MS.gene035607.t1 | AT4G08980 | 27.843 | 255 | 149 | 7 | 426 | 677 | 10 | 232 | 1.72e-14 | 75.5 |
MS.gene035607.t1 | AT4G08980 | 27.843 | 255 | 149 | 7 | 426 | 677 | 10 | 232 | 1.72e-14 | 75.5 |
MS.gene035607.t1 | AT4G08980 | 27.843 | 255 | 149 | 7 | 426 | 677 | 10 | 232 | 1.72e-14 | 75.5 |
MS.gene035607.t1 | AT4G08980 | 27.843 | 255 | 149 | 7 | 426 | 677 | 10 | 232 | 1.72e-14 | 75.5 |
MS.gene035607.t1 | AT4G05470 | 28.458 | 253 | 149 | 8 | 421 | 666 | 41 | 268 | 2.71e-13 | 71.6 |
MS.gene035607.t1 | AT1G03630 | 25.431 | 232 | 138 | 7 | 63 | 269 | 91 | 312 | 3.64e-13 | 72.4 |
MS.gene035607.t1 | AT1G03630 | 25.431 | 232 | 138 | 7 | 63 | 269 | 89 | 310 | 3.79e-13 | 72.4 |
MS.gene035607.t1 | AT4G05460 | 27.778 | 252 | 133 | 8 | 422 | 666 | 15 | 224 | 1.48e-11 | 66.6 |
MS.gene035607.t1 | AT4G27440 | 24.260 | 338 | 195 | 12 | 65 | 370 | 92 | 400 | 2.52e-11 | 66.6 |
MS.gene035607.t1 | AT4G27440 | 24.260 | 338 | 195 | 12 | 65 | 370 | 92 | 400 | 2.52e-11 | 66.6 |
Find 148 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTTCTCTTGAGAACTTTA+AGG | 0.162225 | 8.1:-2870804 | None:intergenic |
ATGTCCAATTCTCTTAAATT+TGG | 0.169210 | 8.1:-2870721 | None:intergenic |
GAGGCCTTTAACAGATAAAT+TGG | 0.173035 | 8.1:-2870959 | None:intergenic |
TATCCAGTTTGAACAGATTT+TGG | 0.174813 | 8.1:-2867458 | None:intergenic |
TACCCCAATTTATCTGTTAA+AGG | 0.184336 | 8.1:+2870955 | MS.gene035607:CDS |
ATCATGGTTCAGTGCCTTTA+AGG | 0.216037 | 8.1:+2870077 | MS.gene035607:CDS |
TTCAAACATCACATGAAGTA+TGG | 0.235228 | 8.1:+2868126 | MS.gene035607:CDS |
CAGACTCAATCTTCCACTTC+TGG | 0.249721 | 8.1:-2863410 | None:intergenic |
TCTATCTCAATGATTGCTTT+TGG | 0.262072 | 8.1:+2870694 | MS.gene035607:CDS |
AAGAGAAGGTTCTTCCTTAA+AGG | 0.265727 | 8.1:-2870091 | None:intergenic |
GACTAGGAGAGCCCCTAATA+AGG | 0.290936 | 8.1:-2864492 | None:intergenic |
TTTGCTGCAATGCAGGTTCT+AGG | 0.293570 | 8.1:+2867970 | MS.gene035607:intron |
ATCGGTAATTCAAGTGGTTT+GGG | 0.295458 | 8.1:-2870144 | None:intergenic |
AATGTCTTGACTAGTTAATT+TGG | 0.306538 | 8.1:-2871043 | None:intergenic |
TTTCCTTTGGTCAAACATAA+TGG | 0.307826 | 8.1:-2869914 | None:intergenic |
TGCAGGCAATTGGCAGAATC+AGG | 0.313186 | 8.1:+2863336 | MS.gene035607:intron |
CTCAAGTTCTTGGATTTGTC+TGG | 0.313633 | 8.1:+2871009 | MS.gene035607:CDS |
ATTGACAATACCTCAAGATT+TGG | 0.316651 | 8.1:-2870643 | None:intergenic |
TTCTATGTAAAGAGATAGTT+TGG | 0.323488 | 8.1:+2869872 | MS.gene035607:CDS |
ATGTCCAAATTTAAGAGAAT+TGG | 0.331020 | 8.1:+2870717 | MS.gene035607:CDS |
ATTTCTATTCCAACGAATCT+TGG | 0.336460 | 8.1:+2861438 | MS.gene035607:CDS |
CTCTTGAGAACTTTAAGGTT+GGG | 0.337832 | 8.1:-2870799 | None:intergenic |
GCTTCTTCTGACGCATTTGC+GGG | 0.341378 | 8.1:-2868095 | None:intergenic |
AATCGATCTTGGACTCAAAT+TGG | 0.343092 | 8.1:-2870203 | None:intergenic |
GATCTAACTTGTATTGTTAC+CGG | 0.344134 | 8.1:+2861502 | MS.gene035607:CDS |
GTGTCCTAACCTCAAGTTCT+TGG | 0.355466 | 8.1:+2870999 | MS.gene035607:CDS |
TTGAGATAACTCTCCCCATT+TGG | 0.358709 | 8.1:-2869983 | None:intergenic |
CATCGGTAATTCAAGTGGTT+TGG | 0.362047 | 8.1:-2870145 | None:intergenic |
TTAAAGTTCTCAAGAGAAAT+CGG | 0.368836 | 8.1:+2870806 | MS.gene035607:CDS |
CTTCCAAAATCTGTTCAAAC+TGG | 0.370224 | 8.1:+2867455 | MS.gene035607:CDS |
TCAAGTGGTTTGGGGAAGTA+AGG | 0.371553 | 8.1:-2870135 | None:intergenic |
AGGCCTTTAACAGATAAATT+GGG | 0.375582 | 8.1:-2870958 | None:intergenic |
ATATGAACTTCCATTTCCTT+TGG | 0.375947 | 8.1:-2869927 | None:intergenic |
GAGTCTGAAGGATTGGGATT+GGG | 0.396546 | 8.1:+2863426 | MS.gene035607:CDS |
AATGTTTGGGTTGGATAGAA+TGG | 0.403615 | 8.1:+2861386 | MS.gene035607:CDS |
ACATTGGTCTGGACAATTCC+AGG | 0.406601 | 8.1:-2866236 | None:intergenic |
GAAGATTGAGTCTGAAGGAT+TGG | 0.408927 | 8.1:+2863419 | MS.gene035607:CDS |
CACGATCTCATTAATAATGC+TGG | 0.412420 | 8.1:+2864114 | MS.gene035607:CDS |
AAGATTGAGTCTGAAGGATT+GGG | 0.419313 | 8.1:+2863420 | MS.gene035607:CDS |
GGAGGTAGATCTTCTCTCAT+TGG | 0.419719 | 8.1:+2864041 | MS.gene035607:CDS |
TGCTTCTTCTGACGCATTTG+CGG | 0.419724 | 8.1:-2868096 | None:intergenic |
TGAGTCTGAAGGATTGGGAT+TGG | 0.421322 | 8.1:+2863425 | MS.gene035607:CDS |
CAATGCTTGTTTGTAAATCA+TGG | 0.421533 | 8.1:+2870061 | MS.gene035607:CDS |
AGAGATGATTGGTCTCCCTT+TGG | 0.421794 | 8.1:+2868160 | MS.gene035607:CDS |
GAAGACATGAATCTCACATC+TGG | 0.423639 | 8.1:+2864670 | MS.gene035607:CDS |
TCGAAGCATGGAATCGATCT+TGG | 0.426723 | 8.1:-2870214 | None:intergenic |
ACCAGCGAGGTGATTCGAAT+TGG | 0.426852 | 8.1:-2870173 | None:intergenic |
TTATGTTTGACCAAAGGAAA+TGG | 0.429040 | 8.1:+2869917 | MS.gene035607:CDS |
GGTTGGATAGAATGGTTAAG+AGG | 0.436913 | 8.1:+2861394 | MS.gene035607:CDS |
TGAGAAATATATGCACAAAC+AGG | 0.437377 | 8.1:-2868062 | None:intergenic |
TTTCAAAACACTTGCAACAT+TGG | 0.443541 | 8.1:-2866252 | None:intergenic |
TTGCAAGGTTTGCTGAAGCT+TGG | 0.446570 | 8.1:+2864070 | MS.gene035607:CDS |
ATCAGGGGCACATGTTGTTA+TGG | 0.448034 | 8.1:+2863353 | MS.gene035607:CDS |
AAACACTTGCAACATTGGTC+TGG | 0.453532 | 8.1:-2866247 | None:intergenic |
GCCTCCATTATGCAGGCAAT+TGG | 0.456958 | 8.1:+2863326 | MS.gene035607:intron |
ACCAATGCCACTAGTAGAAC+CGG | 0.458289 | 8.1:-2861521 | None:intergenic |
AGATCATTGATTGGTGGTAA+TGG | 0.459931 | 8.1:-2861484 | None:intergenic |
TCAAGTATTATTAGAATACT+AGG | 0.463584 | 8.1:-2871122 | None:intergenic |
GAGATAGAATAATCAGTAAC+GGG | 0.463937 | 8.1:-2870679 | None:intergenic |
TTGATTGGTGGTAATGGCAT+AGG | 0.467610 | 8.1:-2861478 | None:intergenic |
AGAAATATTGAAAGCAAAGC+AGG | 0.470397 | 8.1:-2864460 | None:intergenic |
GGATAGAATGGTTAAGAGGA+TGG | 0.471707 | 8.1:+2861398 | MS.gene035607:CDS |
ATACAAGTTAGATCATTGAT+TGG | 0.476817 | 8.1:-2861493 | None:intergenic |
AGAAGAAGCAATGTTTGGGT+TGG | 0.478826 | 8.1:+2861377 | MS.gene035607:CDS |
TCTGATAACTCAAGAGTCAT+TGG | 0.479034 | 8.1:+2870756 | MS.gene035607:CDS |
TCAAGTTCTTGGATTTGTCT+GGG | 0.480238 | 8.1:+2871010 | MS.gene035607:CDS |
TCTTGAGAACTTTAAGGTTG+GGG | 0.486298 | 8.1:-2870798 | None:intergenic |
ACTTCATCTATTCAGGCAAA+GGG | 0.487520 | 8.1:+2867430 | MS.gene035607:intron |
CTAAATGTTTCTCCGCAAGA+TGG | 0.494730 | 8.1:+2870871 | MS.gene035607:CDS |
TCTCATTGGATTCTGTTGCA+AGG | 0.494951 | 8.1:+2864055 | MS.gene035607:CDS |
AAATCCAAGAACTTGAGGTT+AGG | 0.495098 | 8.1:-2871003 | None:intergenic |
ACTAGGAGAGCCCCTAATAA+GGG | 0.497187 | 8.1:-2864491 | None:intergenic |
TCTCTTGAGAACTTTAAGGT+TGG | 0.501675 | 8.1:-2870800 | None:intergenic |
ACCGGTTCTACTAGTGGCAT+TGG | 0.509659 | 8.1:+2861520 | MS.gene035607:CDS |
AGGAACAACATCTACGTGTT+GGG | 0.510243 | 8.1:-2870839 | None:intergenic |
GACTCAGCGTTGAAGATCAA+TGG | 0.514991 | 8.1:+2870031 | MS.gene035607:CDS |
AGCCCGCTTTGTGTTCCTCA+CGG | 0.518299 | 8.1:-2863376 | None:intergenic |
AACTTCTCCACGGCATCCAA+AGG | 0.520521 | 8.1:-2868176 | None:intergenic |
TGAAGGATTGGGATTGGGTA+TGG | 0.521640 | 8.1:+2863431 | MS.gene035607:CDS |
TATGAAATACCGACCTCCAA+TGG | 0.522230 | 8.1:-2864145 | None:intergenic |
TACACATAATACACTGATAC+CGG | 0.524375 | 8.1:-2866210 | None:intergenic |
GGCCGTGAGGAACACAAAGC+GGG | 0.527447 | 8.1:+2863374 | MS.gene035607:CDS |
AGTGTATTATGTGTATCGCC+TGG | 0.529462 | 8.1:+2866218 | MS.gene035607:CDS |
AATGACTGGCCAAGATTCGT+TGG | 0.531070 | 8.1:-2861447 | None:intergenic |
CGATCTTGGACTCAAATTGG+AGG | 0.540354 | 8.1:-2870200 | None:intergenic |
ATTGTTACCGGTTCTACTAG+TGG | 0.544945 | 8.1:+2861514 | MS.gene035607:CDS |
TCAAACATCACATGAAGTAT+GGG | 0.545811 | 8.1:+2868127 | MS.gene035607:CDS |
TGATTGGTGGTAATGGCATA+GGG | 0.546689 | 8.1:-2861477 | None:intergenic |
ACTTCTCCACGGCATCCAAA+GGG | 0.554332 | 8.1:-2868175 | None:intergenic |
GCAGGCAATTGGCAGAATCA+GGG | 0.555359 | 8.1:+2863337 | MS.gene035607:intron |
CATAGGGTTATGTAAATGAC+TGG | 0.555543 | 8.1:-2861461 | None:intergenic |
TTGAATACAGAGTGAAGAGA+AGG | 0.560732 | 8.1:-2870105 | None:intergenic |
TGGTCTCCCTTTGGATGCCG+TGG | 0.560737 | 8.1:+2868169 | MS.gene035607:CDS |
TGAGATAGAATAATCAGTAA+CGG | 0.561455 | 8.1:-2870680 | None:intergenic |
ACACTGATACCGGCTTCAGC+AGG | 0.565197 | 8.1:-2866200 | None:intergenic |
CAGGAACAACATCTACGTGT+TGG | 0.566515 | 8.1:-2870840 | None:intergenic |
TTTCTGTAGATGCATCATGT+TGG | 0.566571 | 8.1:+2864634 | MS.gene035607:intron |
GGCCTCAATTTGATATGTCG+AGG | 0.570788 | 8.1:+2870976 | MS.gene035607:CDS |
AATTCGAATCACCTCGCTGG+TGG | 0.571420 | 8.1:+2870175 | MS.gene035607:CDS |
CAAGTGGTTTGGGGAAGTAA+GGG | 0.571572 | 8.1:-2870134 | None:intergenic |
AAGCGACTACCTGCTGAAGC+CGG | 0.571716 | 8.1:+2866191 | MS.gene035607:CDS |
CTCAAGCAGCAAGTTAGCGC+AGG | 0.572048 | 8.1:+2864723 | MS.gene035607:CDS |
GGCCTTTAACAGATAAATTG+GGG | 0.572148 | 8.1:-2870957 | None:intergenic |
AATTGTTGAAATCAGATGAA+TGG | 0.573431 | 8.1:+2868039 | MS.gene035607:CDS |
AAGACATGAATCTCACATCT+GGG | 0.573578 | 8.1:+2864671 | MS.gene035607:CDS |
ACAACATCTACGTGTTGGGT+TGG | 0.574271 | 8.1:-2870835 | None:intergenic |
TCCAATTCGAATCACCTCGC+TGG | 0.575523 | 8.1:+2870172 | MS.gene035607:CDS |
TATCCATTATGTTTGACCAA+AGG | 0.578153 | 8.1:+2869911 | MS.gene035607:CDS |
TTTCAGATGTCCAAATCTTG+AGG | 0.585484 | 8.1:+2870633 | MS.gene035607:intron |
GCATTGGTCTTGAAATTGCA+AGG | 0.585583 | 8.1:+2861536 | MS.gene035607:CDS |
CTCTCACTCTCGTAGCCCAA+AGG | 0.587430 | 8.1:+2870301 | MS.gene035607:CDS |
CAAGTTAGATCATTGATTGG+TGG | 0.592303 | 8.1:-2861490 | None:intergenic |
GCGAGGTGATTCGAATTGGA+TGG | 0.592574 | 8.1:-2870169 | None:intergenic |
AGAATAATCAGTAACGGGAA+CGG | 0.596659 | 8.1:-2870674 | None:intergenic |
ATCTCTAACCACTCTAGATG+AGG | 0.602702 | 8.1:-2870928 | None:intergenic |
CAGGCAATTGGCAGAATCAG+GGG | 0.604548 | 8.1:+2863338 | MS.gene035607:intron |
AAGTGGAAGATTGAGTCTGA+AGG | 0.606639 | 8.1:+2863414 | MS.gene035607:CDS |
GCTTCAGAATCTCCATCTTG+CGG | 0.607040 | 8.1:-2870883 | None:intergenic |
GATTCGAATTGGATGGTCAT+CGG | 0.607145 | 8.1:-2870162 | None:intergenic |
ATGGTCATCGGTAATTCAAG+TGG | 0.611837 | 8.1:-2870150 | None:intergenic |
TCACAATACTCTGAAACTTG+AGG | 0.611981 | 8.1:-2868017 | None:intergenic |
GAAACATTTAGCAAACGAGC+AGG | 0.612644 | 8.1:-2870859 | None:intergenic |
GATCTTGGACTCAAATTGGA+GGG | 0.617322 | 8.1:-2870199 | None:intergenic |
GATAACTCAAGAGTCATTGG+TGG | 0.618105 | 8.1:+2870759 | MS.gene035607:CDS |
GCCTCAATTTGATATGTCGA+GGG | 0.623366 | 8.1:+2870977 | MS.gene035607:CDS |
ACCCTCGACATATCAAATTG+AGG | 0.628508 | 8.1:-2870978 | None:intergenic |
GGGTATGGCACTCAATGTTG+AGG | 0.629101 | 8.1:+2863446 | MS.gene035607:CDS |
CTGAATGATAGATCGAAGCA+TGG | 0.630257 | 8.1:-2870226 | None:intergenic |
TGCCGTGGAGAAGTTTCTAG+AGG | 0.630358 | 8.1:+2868184 | MS.gene035607:CDS |
TGCTTCGATCTATCATTCAG+TGG | 0.632004 | 8.1:+2870229 | MS.gene035607:CDS |
ATTCTATGCCTCATCTAGAG+TGG | 0.634739 | 8.1:+2870920 | MS.gene035607:CDS |
CAGACAAATCCAAGAACTTG+AGG | 0.637842 | 8.1:-2871008 | None:intergenic |
GGAGAGCCCCTAATAAGGGA+TGG | 0.640568 | 8.1:-2864487 | None:intergenic |
CTAATGAGTTGATCCAGAAG+TGG | 0.643990 | 8.1:+2863397 | MS.gene035607:CDS |
TAGAATACTAGGTTCAAACA+TGG | 0.645209 | 8.1:-2871111 | None:intergenic |
GCCCTCTAGAAACTTCTCCA+CGG | 0.655063 | 8.1:-2868186 | None:intergenic |
TTCACATTCACAATTCGACT+AGG | 0.656580 | 8.1:-2864508 | None:intergenic |
GCCGTGGAGAAGTTTCTAGA+GGG | 0.662906 | 8.1:+2868185 | MS.gene035607:CDS |
TTGGCTTGTCAAGGTGATGG+AGG | 0.666956 | 8.1:+2864023 | MS.gene035607:intron |
GTCGAATGAAGATGTCGATG+AGG | 0.668202 | 8.1:-2870011 | None:intergenic |
TGGCCGTGAGGAACACAAAG+CGG | 0.670869 | 8.1:+2863373 | MS.gene035607:CDS |
CACATGTTGTTATGGCCGTG+AGG | 0.674935 | 8.1:+2863361 | MS.gene035607:CDS |
TCGGTAATTCAAGTGGTTTG+GGG | 0.678820 | 8.1:-2870143 | None:intergenic |
TTATTAATGAGATCGTGCAA+AGG | 0.686181 | 8.1:-2864108 | None:intergenic |
ATAATCAGTAACGGGAACGG+AGG | 0.689362 | 8.1:-2870671 | None:intergenic |
AGCGTTGAAGATCAATGGCG+CGG | 0.692015 | 8.1:+2870036 | MS.gene035607:CDS |
AATTGGAGGGTCCACCAGCG+AGG | 0.715747 | 8.1:-2870186 | None:intergenic |
GTTGAATGCGAATCTGAGTG+AGG | 0.716510 | 8.1:-2870263 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 2861322 | 2871134 | 2861322 | ID=MS.gene035607 |
chr8.1 | mRNA | 2861322 | 2871134 | 2861322 | ID=MS.gene035607.t1;Parent=MS.gene035607 |
chr8.1 | exon | 2861322 | 2861557 | 2861322 | ID=MS.gene035607.t1.exon1;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2861322 | 2861557 | 2861322 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2863341 | 2863467 | 2863341 | ID=MS.gene035607.t1.exon2;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2863341 | 2863467 | 2863341 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2864036 | 2864153 | 2864036 | ID=MS.gene035607.t1.exon3;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2864036 | 2864153 | 2864036 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2864401 | 2864537 | 2864401 | ID=MS.gene035607.t1.exon4;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2864401 | 2864537 | 2864401 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2864643 | 2864744 | 2864643 | ID=MS.gene035607.t1.exon5;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2864643 | 2864744 | 2864643 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2866167 | 2866291 | 2866167 | ID=MS.gene035607.t1.exon6;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2866167 | 2866291 | 2866167 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2867445 | 2867518 | 2867445 | ID=MS.gene035607.t1.exon7;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2867445 | 2867518 | 2867445 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2867985 | 2868224 | 2867985 | ID=MS.gene035607.t1.exon8;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2867985 | 2868224 | 2867985 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2869872 | 2870322 | 2869872 | ID=MS.gene035607.t1.exon9;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2869872 | 2870322 | 2869872 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
chr8.1 | exon | 2870639 | 2871134 | 2870639 | ID=MS.gene035607.t1.exon10;Parent=MS.gene035607.t1 |
chr8.1 | CDS | 2870639 | 2871134 | 2870639 | ID=cds.MS.gene035607.t1;Parent=MS.gene035607.t1 |
Gene Sequence |
Protein sequence |