Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000556.t1 | XP_003627283.1 | 93.8 | 357 | 22 | 0 | 1 | 357 | 1 | 357 | 2.90E-192 | 681 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000556.t1 | Q9SPV4 | 54.5 | 367 | 148 | 6 | 1 | 357 | 1 | 358 | 2.0e-104 | 380.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000556.t1 | G7L6V5 | 93.8 | 357 | 22 | 0 | 1 | 357 | 1 | 357 | 2.1e-192 | 681.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000556.t1 | MTR_8g020700 | 93.838 | 357 | 22 | 0 | 1 | 357 | 1 | 357 | 0.0 | 694 |
| MS.gene000556.t1 | MTR_8g020690 | 71.389 | 360 | 100 | 1 | 1 | 357 | 1 | 360 | 0.0 | 541 |
| MS.gene000556.t1 | MTR_8g020700 | 91.373 | 255 | 22 | 0 | 1 | 255 | 1 | 255 | 2.16e-174 | 485 |
| MS.gene000556.t1 | MTR_8g076900 | 62.259 | 363 | 130 | 2 | 1 | 357 | 1 | 362 | 5.35e-168 | 473 |
| MS.gene000556.t1 | MTR_3g467270 | 61.622 | 370 | 126 | 4 | 1 | 356 | 1 | 368 | 7.69e-167 | 470 |
| MS.gene000556.t1 | MTR_4g018820 | 62.222 | 360 | 132 | 2 | 1 | 357 | 1 | 359 | 9.84e-165 | 464 |
| MS.gene000556.t1 | MTR_5g020940 | 58.491 | 371 | 138 | 3 | 1 | 356 | 11 | 380 | 7.99e-160 | 453 |
| MS.gene000556.t1 | MTR_6g056070 | 60.504 | 357 | 139 | 2 | 1 | 356 | 1 | 356 | 2.16e-159 | 451 |
| MS.gene000556.t1 | MTR_8g077040 | 58.266 | 369 | 139 | 2 | 1 | 355 | 1 | 368 | 5.15e-157 | 445 |
| MS.gene000556.t1 | MTR_8g076900 | 67.886 | 246 | 78 | 1 | 1 | 246 | 1 | 245 | 7.89e-124 | 357 |
| MS.gene000556.t1 | MTR_3g117060 | 42.175 | 377 | 190 | 4 | 1 | 357 | 1 | 369 | 1.15e-105 | 315 |
| MS.gene000556.t1 | MTR_5g046110 | 40.997 | 361 | 206 | 2 | 1 | 355 | 61 | 420 | 4.35e-96 | 292 |
| MS.gene000556.t1 | MTR_1g022455 | 42.216 | 379 | 195 | 6 | 1 | 356 | 1 | 378 | 5.68e-92 | 280 |
| MS.gene000556.t1 | MTR_1g022465 | 43.651 | 378 | 190 | 7 | 1 | 356 | 1 | 377 | 6.21e-92 | 280 |
| MS.gene000556.t1 | MTR_3g467560 | 40.217 | 368 | 202 | 4 | 1 | 355 | 25 | 387 | 1.59e-91 | 279 |
| MS.gene000556.t1 | MTR_7g084620 | 38.587 | 368 | 198 | 6 | 6 | 355 | 6 | 363 | 2.04e-82 | 255 |
| MS.gene000556.t1 | MTR_7g084350 | 37.197 | 371 | 207 | 5 | 3 | 355 | 1 | 363 | 2.29e-79 | 247 |
| MS.gene000556.t1 | MTR_8g077030 | 55.251 | 219 | 76 | 2 | 1 | 219 | 1 | 197 | 2.77e-77 | 247 |
| MS.gene000556.t1 | MTR_3g054330 | 33.957 | 374 | 224 | 7 | 1 | 354 | 10 | 380 | 6.61e-60 | 197 |
| MS.gene000556.t1 | MTR_7g084330 | 33.143 | 350 | 191 | 8 | 24 | 355 | 7 | 331 | 1.34e-56 | 187 |
| MS.gene000556.t1 | MTR_3g052700 | 31.937 | 382 | 225 | 10 | 1 | 354 | 13 | 387 | 1.24e-55 | 187 |
| MS.gene000556.t1 | MTR_5g093900 | 31.688 | 385 | 224 | 11 | 1 | 354 | 13 | 389 | 2.03e-54 | 184 |
| MS.gene000556.t1 | MTR_1g108660 | 34.985 | 323 | 182 | 7 | 45 | 356 | 33 | 338 | 2.75e-53 | 179 |
| MS.gene000556.t1 | MTR_6g015620 | 29.752 | 121 | 74 | 2 | 248 | 357 | 18 | 138 | 6.47e-14 | 68.6 |
| MS.gene000556.t1 | MTR_7g084340 | 28.800 | 125 | 73 | 2 | 244 | 355 | 8 | 129 | 5.89e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000556.t1 | AT5G66430 | 40.669 | 359 | 197 | 4 | 9 | 356 | 1 | 354 | 2.04e-91 | 278 |
| MS.gene000556.t1 | AT4G36470 | 40.970 | 371 | 198 | 6 | 2 | 356 | 5 | 370 | 1.01e-90 | 276 |
| MS.gene000556.t1 | AT3G11480 | 39.776 | 357 | 206 | 4 | 5 | 356 | 27 | 379 | 2.29e-90 | 276 |
| MS.gene000556.t1 | AT5G04380 | 41.457 | 357 | 195 | 3 | 9 | 356 | 38 | 389 | 4.29e-90 | 276 |
| MS.gene000556.t1 | AT5G04370 | 41.972 | 355 | 194 | 4 | 9 | 356 | 41 | 390 | 1.10e-89 | 275 |
| MS.gene000556.t1 | AT5G04370 | 41.972 | 355 | 194 | 4 | 9 | 356 | 60 | 409 | 2.05e-89 | 275 |
| MS.gene000556.t1 | AT5G04370 | 41.972 | 355 | 194 | 4 | 9 | 356 | 46 | 395 | 2.43e-89 | 274 |
| MS.gene000556.t1 | AT3G21950 | 41.081 | 370 | 195 | 6 | 6 | 356 | 3 | 368 | 2.77e-88 | 270 |
| MS.gene000556.t1 | AT5G38020 | 41.351 | 370 | 194 | 6 | 6 | 356 | 3 | 368 | 3.93e-87 | 267 |
| MS.gene000556.t1 | AT1G19640 | 41.495 | 388 | 193 | 6 | 1 | 355 | 1 | 387 | 8.50e-87 | 267 |
| MS.gene000556.t1 | AT5G04380 | 41.176 | 357 | 189 | 4 | 9 | 356 | 34 | 378 | 5.09e-86 | 265 |
| MS.gene000556.t1 | AT5G04380 | 42.587 | 317 | 169 | 2 | 48 | 356 | 7 | 318 | 2.08e-84 | 259 |
| MS.gene000556.t1 | AT2G14060 | 40.108 | 369 | 202 | 5 | 3 | 356 | 8 | 372 | 2.37e-84 | 260 |
| MS.gene000556.t1 | AT3G21950 | 37.562 | 402 | 196 | 7 | 6 | 356 | 3 | 400 | 1.58e-81 | 254 |
| MS.gene000556.t1 | AT5G38020 | 41.590 | 327 | 169 | 5 | 48 | 356 | 7 | 329 | 4.94e-78 | 243 |
| MS.gene000556.t1 | AT2G14060 | 45.259 | 232 | 122 | 3 | 3 | 233 | 8 | 235 | 4.50e-64 | 204 |
| MS.gene000556.t1 | AT1G68040 | 34.877 | 367 | 204 | 7 | 9 | 356 | 13 | 363 | 6.54e-63 | 205 |
| MS.gene000556.t1 | AT1G15125 | 36.527 | 334 | 187 | 10 | 9 | 331 | 1 | 320 | 7.27e-58 | 191 |
| MS.gene000556.t1 | AT5G55250 | 33.238 | 349 | 211 | 7 | 1 | 330 | 13 | 358 | 2.35e-55 | 186 |
| MS.gene000556.t1 | AT5G37970 | 34.492 | 374 | 206 | 11 | 5 | 356 | 6 | 362 | 3.17e-53 | 180 |
| MS.gene000556.t1 | AT5G37990 | 33.687 | 377 | 205 | 12 | 5 | 356 | 6 | 362 | 2.59e-51 | 175 |
| MS.gene000556.t1 | AT4G26420 | 32.203 | 354 | 205 | 11 | 3 | 331 | 7 | 350 | 3.41e-51 | 175 |
| MS.gene000556.t1 | AT5G55250 | 34.932 | 292 | 170 | 6 | 56 | 330 | 32 | 320 | 1.06e-49 | 170 |
| MS.gene000556.t1 | AT5G38100 | 33.918 | 342 | 192 | 11 | 9 | 333 | 10 | 334 | 2.01e-48 | 167 |
| MS.gene000556.t1 | AT5G56300 | 30.484 | 351 | 216 | 8 | 3 | 332 | 18 | 361 | 7.08e-47 | 164 |
| MS.gene000556.t1 | AT3G44840 | 33.819 | 343 | 199 | 8 | 9 | 341 | 7 | 331 | 7.22e-47 | 162 |
| MS.gene000556.t1 | AT5G38100 | 35.154 | 293 | 161 | 9 | 54 | 333 | 35 | 311 | 2.30e-46 | 161 |
| MS.gene000556.t1 | AT5G38780 | 31.778 | 343 | 200 | 9 | 9 | 333 | 10 | 336 | 5.57e-45 | 158 |
| MS.gene000556.t1 | AT3G44860 | 35.159 | 347 | 189 | 11 | 9 | 341 | 7 | 331 | 8.27e-44 | 155 |
| MS.gene000556.t1 | AT3G44870 | 34.795 | 342 | 194 | 9 | 9 | 341 | 7 | 328 | 2.01e-43 | 154 |
| MS.gene000556.t1 | AT5G38780 | 32.997 | 297 | 169 | 8 | 51 | 333 | 7 | 287 | 9.42e-43 | 151 |
| MS.gene000556.t1 | AT1G66700 | 31.118 | 331 | 201 | 7 | 9 | 328 | 9 | 323 | 1.90e-41 | 149 |
| MS.gene000556.t1 | AT1G66720 | 33.916 | 286 | 168 | 5 | 9 | 285 | 9 | 282 | 3.56e-41 | 148 |
| MS.gene000556.t1 | AT4G26420 | 37.445 | 227 | 122 | 7 | 3 | 218 | 7 | 224 | 1.55e-39 | 141 |
| MS.gene000556.t1 | AT1G15125 | 39.726 | 219 | 109 | 8 | 9 | 217 | 1 | 206 | 1.85e-39 | 140 |
| MS.gene000556.t1 | AT4G26420 | 37.557 | 221 | 118 | 7 | 9 | 218 | 1 | 212 | 1.80e-38 | 138 |
| MS.gene000556.t1 | AT5G38100 | 40.271 | 221 | 102 | 9 | 9 | 213 | 10 | 216 | 2.03e-35 | 130 |
| MS.gene000556.t1 | AT5G38100 | 40.271 | 221 | 102 | 9 | 9 | 213 | 10 | 216 | 2.30e-35 | 130 |
| MS.gene000556.t1 | AT1G66700 | 37.838 | 222 | 115 | 5 | 9 | 220 | 9 | 217 | 7.26e-35 | 129 |
| MS.gene000556.t1 | AT1G66690 | 30.211 | 331 | 204 | 7 | 9 | 328 | 9 | 323 | 1.43e-32 | 125 |
Find 69 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGCAATTGCAAGATTTC+TGG | 0.130009 | 8.2:-74352421 | None:intergenic |
| GTTATGGCTTCATCTCTTAT+TGG | 0.171047 | 8.2:-74352375 | None:intergenic |
| AGATGAAATCAAAACTAAAA+TGG | 0.184768 | 8.2:+74352626 | MS.gene000556:CDS |
| AATCTTGCAATTGCAGATTT+AGG | 0.192064 | 8.2:+74352426 | MS.gene000556:CDS |
| ATGGGTCCTTGTTACTTCTT+TGG | 0.197736 | 8.2:+74352645 | MS.gene000556:CDS |
| TGTTACTTCTTTGGGGTTCC+TGG | 0.212711 | 8.2:+74352654 | MS.gene000556:CDS |
| TAAAATATTGTTGCTACTAT+TGG | 0.215282 | 8.2:+74353254 | MS.gene000556:CDS |
| TGGGTCCTTGTTACTTCTTT+GGG | 0.234467 | 8.2:+74352646 | MS.gene000556:CDS |
| CAATGATATGATAACATTAA+TGG | 0.254963 | 8.2:-74353723 | None:intergenic |
| GCAGATTTAGGTTGTTCTTC+TGG | 0.263073 | 8.2:+74352438 | MS.gene000556:CDS |
| TTGCTACTATTGGGAGCTTT+TGG | 0.274363 | 8.2:+74353264 | MS.gene000556:CDS |
| GGTTCTAATCATCATGAATA+TGG | 0.286925 | 8.2:+74353563 | MS.gene000556:CDS |
| TATAGGGAAATGCAGTTTCT+TGG | 0.287192 | 8.2:+74352346 | MS.gene000556:intron |
| GATACCACAAACAAAGTATT+TGG | 0.320633 | 8.2:-74352462 | None:intergenic |
| ATCATTTGCCATCAATCGTT+TGG | 0.330535 | 8.2:+74353517 | MS.gene000556:CDS |
| TCTTAATGGCATGGTCTTAG+AGG | 0.335242 | 8.2:+74353294 | MS.gene000556:CDS |
| AAAATATTGTTGCTACTATT+GGG | 0.341372 | 8.2:+74353255 | MS.gene000556:CDS |
| TCAATTTAAAAGAGACTTCT+CGG | 0.358277 | 8.2:+74353141 | MS.gene000556:CDS |
| TTGTTGGAAGCTTATGTAGA+TGG | 0.372304 | 8.2:+74353542 | MS.gene000556:CDS |
| CAACAACTCCAAACGATTGA+TGG | 0.383435 | 8.2:-74353525 | None:intergenic |
| GAGATGAATGGTTCAATTGT+TGG | 0.392209 | 8.2:-74352515 | None:intergenic |
| AATGGCCTTCAGTTTCTCCT+TGG | 0.406894 | 8.2:-74353705 | None:intergenic |
| TATGCAATAGGGGATTATAA+AGG | 0.420688 | 8.2:+74353415 | MS.gene000556:intron |
| ATTCCTCTTACAGCCTTCAT+TGG | 0.425514 | 8.2:+74352724 | MS.gene000556:CDS |
| CATCAATCGTTTGGAGTTGT+TGG | 0.425821 | 8.2:+74353526 | MS.gene000556:CDS |
| ATGGCCTTCAGTTTCTCCTT+GGG | 0.426553 | 8.2:-74353704 | None:intergenic |
| GGCTGCTGTTCTTAATGGCA+TGG | 0.436194 | 8.2:+74353285 | MS.gene000556:CDS |
| TGGACCAAATACTTTGTTTG+TGG | 0.436251 | 8.2:+74352458 | MS.gene000556:CDS |
| GATGAAATCAAAACTAAAAT+GGG | 0.441907 | 8.2:+74352627 | MS.gene000556:CDS |
| TATGCTTTAACAACATTTGA+GGG | 0.450868 | 8.2:-74353112 | None:intergenic |
| GTTGGAGTAGAGGCTTGTTA+TGG | 0.455348 | 8.2:-74352391 | None:intergenic |
| ATCAGATATTATCATGGTTG+TGG | 0.467980 | 8.2:+74352482 | MS.gene000556:CDS |
| CCATTGGTAGTTAGCCACTT+TGG | 0.476037 | 8.2:+74353623 | MS.gene000556:CDS |
| CAGCCTTCATTGGCTATCAA+AGG | 0.487208 | 8.2:+74352734 | MS.gene000556:CDS |
| TGGAAAATGTGTTGGAGTAG+AGG | 0.492471 | 8.2:-74352401 | None:intergenic |
| TATAGAGATGGATAATATTG+AGG | 0.495436 | 8.2:-74353464 | None:intergenic |
| GTGCACATGAATGGAGGTAA+TGG | 0.501142 | 8.2:+74351230 | MS.gene000556:CDS |
| GAGAGCTATGGCTGAACCAT+TGG | 0.503480 | 8.2:+74353607 | MS.gene000556:CDS |
| ATGAAATGCAAACTTCGATC+AGG | 0.505960 | 8.2:-74352699 | None:intergenic |
| ATAGAGATGGATAATATTGA+GGG | 0.510533 | 8.2:-74353463 | None:intergenic |
| GTATGCTTTAACAACATTTG+AGG | 0.517154 | 8.2:-74353113 | None:intergenic |
| GGGTCCTTGTTACTTCTTTG+GGG | 0.519835 | 8.2:+74352647 | MS.gene000556:CDS |
| ATCTCTATATGAAGTAGAGT+TGG | 0.520497 | 8.2:+74353478 | MS.gene000556:CDS |
| GGACAGGTAGTGCACATGAA+TGG | 0.527484 | 8.2:+74351221 | MS.gene000556:CDS |
| TGTGGTATCAGATATTATCA+TGG | 0.532840 | 8.2:+74352476 | MS.gene000556:CDS |
| TAGCCAATGAAGGCTGTAAG+AGG | 0.535843 | 8.2:-74352727 | None:intergenic |
| CGTGCAGAGGAACTAGTTGA+AGG | 0.536965 | 8.2:+74353178 | MS.gene000556:CDS |
| AAGATTTCTGGAAAATGTGT+TGG | 0.541119 | 8.2:-74352409 | None:intergenic |
| GAGTTGGAAGTTCTCAATGA+AGG | 0.547450 | 8.2:+74353494 | MS.gene000556:CDS |
| TAACCTTTGATAGCCAATGA+AGG | 0.548055 | 8.2:-74352737 | None:intergenic |
| TCTTGTACTCGGGAGATGAA+TGG | 0.553449 | 8.2:-74352527 | None:intergenic |
| GTGCAGAGGAACTAGTTGAA+GGG | 0.554125 | 8.2:+74353179 | MS.gene000556:CDS |
| CTATTATATCTTCACCAAAG+TGG | 0.556718 | 8.2:-74353637 | None:intergenic |
| TCATGTGCACTACCTGTCCC+AGG | 0.558734 | 8.2:-74351217 | None:intergenic |
| TTATTGTCTTCTATACCCTC+CGG | 0.563075 | 8.2:-74353061 | None:intergenic |
| AACTCTACTTCATATAGAGA+TGG | 0.567586 | 8.2:-74353476 | None:intergenic |
| AATGAAGGCTGTAAGAGGAA+TGG | 0.571499 | 8.2:-74352722 | None:intergenic |
| TGCAGAGGAACTAGTTGAAG+GGG | 0.594526 | 8.2:+74353180 | MS.gene000556:CDS |
| GGGAATTATTAGGTTCCGGA+GGG | 0.604890 | 8.2:+74353046 | MS.gene000556:intron |
| TGCATGGTTCTAACAATGAG+TGG | 0.606537 | 8.2:+74353205 | MS.gene000556:CDS |
| CCAAAGTGGCTAACTACCAA+TGG | 0.610594 | 8.2:-74353623 | None:intergenic |
| CATAATTGATAAATTACCCA+AGG | 0.614571 | 8.2:+74353688 | MS.gene000556:CDS |
| GGGGAATTATTAGGTTCCGG+AGG | 0.634746 | 8.2:+74353045 | MS.gene000556:intron |
| GGAACCCCAAAGAAGTAACA+AGG | 0.641016 | 8.2:-74352651 | None:intergenic |
| ATTACCCAAGGAGAAACTGA+AGG | 0.647612 | 8.2:+74353700 | MS.gene000556:CDS |
| TGCACGATTAATGAGAGCTA+TGG | 0.650401 | 8.2:+74353595 | MS.gene000556:CDS |
| CAGGTAGTGCACATGAATGG+AGG | 0.657179 | 8.2:+74351224 | MS.gene000556:CDS |
| ACTCTACTATAGAAAGAACC+AGG | 0.657375 | 8.2:-74352672 | None:intergenic |
| GCAGAGGAACTAGTTGAAGG+GGG | 0.710839 | 8.2:+74353181 | MS.gene000556:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTATTATATTGATATA+GGG | + | chr8.2:74352330-74352349 | MS.gene000556:intron | 10.0% |
| !! | TTTCTTTATTATATTGATAT+AGG | + | chr8.2:74352329-74352348 | MS.gene000556:intron | 10.0% |
| !!! | ATTTATCAATTATGATTTTT+TGG | - | chr8.2:74353682-74353701 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAATTTCTCAAA+AGG | + | chr8.2:74351947-74351966 | MS.gene000556:intron | 10.0% |
| !!! | TAGTTTATTTTTTAAAACAA+TGG | - | chr8.2:74351787-74351806 | None:intergenic | 10.0% |
| !!! | TCATTTTAAACATTTTATTT+TGG | + | chr8.2:74351904-74351923 | MS.gene000556:intron | 10.0% |
| !!! | TGATTTTATTTGTTAATTAT+GGG | + | chr8.2:74353025-74353044 | MS.gene000556:intron | 10.0% |
| !!! | TTGATTTTATTTGTTAATTA+TGG | + | chr8.2:74353024-74353043 | MS.gene000556:intron | 10.0% |
| !! | AATTGATTAGATAATATCTA+AGG | - | chr8.2:74352129-74352148 | None:intergenic | 15.0% |
| !! | ATTAAAAAATATCTTGTACT+CGG | - | chr8.2:74352541-74352560 | None:intergenic | 15.0% |
| !! | TAGATATTATCTAATCAATT+AGG | + | chr8.2:74352129-74352148 | MS.gene000556:intron | 15.0% |
| !!! | AATTAAAAAAACTTGTTTGA+AGG | - | chr8.2:74352274-74352293 | None:intergenic | 15.0% |
| !!! | ACTTTTTAAAATTTCTCAAA+AGG | + | chr8.2:74351827-74351846 | MS.gene000556:intron | 15.0% |
| !!! | ATATTATTTTTGTATGCAAT+AGG | + | chr8.2:74353403-74353422 | MS.gene000556:intron | 15.0% |
| !!! | ATATTTTTTAATGATGTTTC+AGG | + | chr8.2:74352549-74352568 | MS.gene000556:CDS | 15.0% |
| !!! | GATTTTATTTGTTAATTATG+GGG | + | chr8.2:74353026-74353045 | MS.gene000556:intron | 15.0% |
| !!! | TATTATTTTTGTATGCAATA+GGG | + | chr8.2:74353404-74353423 | MS.gene000556:intron | 15.0% |
| !!! | TCATAAAAAACTTTTTTCTT+TGG | - | chr8.2:74352162-74352181 | None:intergenic | 15.0% |
| !! | AAAATATTGTTGCTACTATT+GGG | + | chr8.2:74353255-74353274 | MS.gene000556:CDS | 20.0% |
| !! | AGATGAAATCAAAACTAAAA+TGG | + | chr8.2:74352626-74352645 | MS.gene000556:CDS | 20.0% |
| !! | AGTTCTTAATGATATTATTG+TGG | - | chr8.2:74351700-74351719 | None:intergenic | 20.0% |
| !! | CAATGATATGATAACATTAA+TGG | - | chr8.2:74353726-74353745 | None:intergenic | 20.0% |
| !! | GAAACACAATATAAAATATG+AGG | - | chr8.2:74352772-74352791 | None:intergenic | 20.0% |
| !! | GATGAAATCAAAACTAAAAT+GGG | + | chr8.2:74352627-74352646 | MS.gene000556:CDS | 20.0% |
| !! | GTTCTTAATGATATTATTGT+GGG | - | chr8.2:74351699-74351718 | None:intergenic | 20.0% |
| !! | TAAAATATTGTTGCTACTAT+TGG | + | chr8.2:74353254-74353273 | MS.gene000556:CDS | 20.0% |
| !! | TAAATATTGAGATTGTCTAT+AGG | + | chr8.2:74351627-74351646 | MS.gene000556:intron | 20.0% |
| !! | TTAAAAAATATCTTGTACTC+GGG | - | chr8.2:74352540-74352559 | None:intergenic | 20.0% |
| !!! | AATAACATTAACTACCTTTT+TGG | + | chr8.2:74351869-74351888 | MS.gene000556:intron | 20.0% |
| !!! | AGTATTTTGAACATAATAGT+CGG | - | chr8.2:74351672-74351691 | None:intergenic | 20.0% |
| !!! | ATTATTTTTGTATGCAATAG+GGG | + | chr8.2:74353405-74353424 | MS.gene000556:intron | 20.0% |
| !!! | CATATTTAACGGTTTTAAAA+CGG | + | chr8.2:74351759-74351778 | MS.gene000556:intron | 20.0% |
| !!! | GCATGTAATGTTTTTTTTTT+TGG | - | chr8.2:74352994-74353013 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTTTCACGTT+TGG | + | chr8.2:74351310-74351329 | MS.gene000556:intron | 20.0% |
| ! | AAGAACTATCTTTAATGGTA+TGG | - | chr8.2:74351367-74351386 | None:intergenic | 25.0% |
| ! | ATAGAGATGGATAATATTGA+GGG | - | chr8.2:74353466-74353485 | None:intergenic | 25.0% |
| ! | CATAATTGATAAATTACCCA+AGG | + | chr8.2:74353688-74353707 | MS.gene000556:CDS | 25.0% |
| ! | GTTAATTATGGGGAATTATT+AGG | + | chr8.2:74353036-74353055 | MS.gene000556:intron | 25.0% |
| ! | TACCAATTGAACTACATTTA+CGG | - | chr8.2:74352873-74352892 | None:intergenic | 25.0% |
| ! | TATAGAGATGGATAATATTG+AGG | - | chr8.2:74353467-74353486 | None:intergenic | 25.0% |
| ! | TATGCTTTAACAACATTTGA+GGG | - | chr8.2:74353115-74353134 | None:intergenic | 25.0% |
| ! | TCAATTTAAAAGAGACTTCT+CGG | + | chr8.2:74353141-74353160 | MS.gene000556:CDS | 25.0% |
| !! | CAACAATATTTTATGTCACA+TGG | - | chr8.2:74353247-74353266 | None:intergenic | 25.0% |
| !! | GATTTTATGAGCAATCAAAA+AGG | - | chr8.2:74352006-74352025 | None:intergenic | 25.0% |
| !! | GGATATGAGAAATTTGATTT+GGG | + | chr8.2:74351546-74351565 | MS.gene000556:intron | 25.0% |
| !! | TTCACGTTTGGTATAATTTT+TGG | + | chr8.2:74351322-74351341 | MS.gene000556:intron | 25.0% |
| !!! | AGAAATTTGATTTGGGATTT+TGG | + | chr8.2:74351553-74351572 | MS.gene000556:intron | 25.0% |
| !!! | CAATTATGATTTTTTGGTGA+CGG | - | chr8.2:74353676-74353695 | None:intergenic | 25.0% |
| !!! | GAAATTTGATTTGGGATTTT+GGG | + | chr8.2:74351554-74351573 | MS.gene000556:intron | 25.0% |
| !!! | GTATAATTTTTGGAAGATGA+AGG | + | chr8.2:74351332-74351351 | MS.gene000556:intron | 25.0% |
| !!! | TGATTTTAAGAGACAAAGAA+TGG | + | chr8.2:74352215-74352234 | MS.gene000556:intron | 25.0% |
| AACTCTACTTCATATAGAGA+TGG | - | chr8.2:74353479-74353498 | None:intergenic | 30.0% | |
| AATCTTGCAATTGCAGATTT+AGG | + | chr8.2:74352426-74352445 | MS.gene000556:CDS | 30.0% | |
| ACCAATTGAACTACATTTAC+GGG | - | chr8.2:74352872-74352891 | None:intergenic | 30.0% | |
| ATCAGATATTATCATGGTTG+TGG | + | chr8.2:74352482-74352501 | MS.gene000556:CDS | 30.0% | |
| ATCTCTATATGAAGTAGAGT+TGG | + | chr8.2:74353478-74353497 | MS.gene000556:CDS | 30.0% | |
| CTACTAGGGATAATTTATAC+AGG | + | chr8.2:74352894-74352913 | MS.gene000556:intron | 30.0% | |
| CTATTATATCTTCACCAAAG+TGG | - | chr8.2:74353640-74353659 | None:intergenic | 30.0% | |
| GATAATTTATACAGGAGCTA+GGG | + | chr8.2:74352902-74352921 | MS.gene000556:intron | 30.0% | |
| GGCAAAAGAACTATCTTTAA+TGG | - | chr8.2:74351372-74351391 | None:intergenic | 30.0% | |
| GGGATATGAGAAATTTGATT+TGG | + | chr8.2:74351545-74351564 | MS.gene000556:intron | 30.0% | |
| GTATGCTTTAACAACATTTG+AGG | - | chr8.2:74353116-74353135 | None:intergenic | 30.0% | |
| TATGCAATAGGGGATTATAA+AGG | + | chr8.2:74353415-74353434 | MS.gene000556:intron | 30.0% | |
| TGCAAAAAACTCATTTCATC+AGG | + | chr8.2:74351265-74351284 | MS.gene000556:CDS | 30.0% | |
| TGTGGTATCAGATATTATCA+TGG | + | chr8.2:74352476-74352495 | MS.gene000556:CDS | 30.0% | |
| ! | AAGATTTCTGGAAAATGTGT+TGG | - | chr8.2:74352412-74352431 | None:intergenic | 30.0% |
| ! | CTTTTCATAACCAGAATAGA+TGG | - | chr8.2:74351409-74351428 | None:intergenic | 30.0% |
| ! | GATACCACAAACAAAGTATT+TGG | - | chr8.2:74352465-74352484 | None:intergenic | 30.0% |
| ! | GATTTTATGAGCAACCAAAA+AGG | - | chr8.2:74351886-74351905 | None:intergenic | 30.0% |
| ! | GGTTCTAATCATCATGAATA+TGG | + | chr8.2:74353563-74353582 | MS.gene000556:CDS | 30.0% |
| ! | TAAAGATAGTTCTTTTGCCA+TGG | + | chr8.2:74351373-74351392 | MS.gene000556:intron | 30.0% |
| ACTCTACTATAGAAAGAACC+AGG | - | chr8.2:74352675-74352694 | None:intergenic | 35.0% | |
| AGATTCACACACATTATGTG+TGG | - | chr8.2:74352953-74352972 | None:intergenic | 35.0% | |
| AGGTATGTGTGCGTATATAA+GGG | + | chr8.2:74351285-74351304 | MS.gene000556:intron | 35.0% | |
| ATATCTTGAGCCATCTATTC+TGG | + | chr8.2:74351396-74351415 | MS.gene000556:intron | 35.0% | |
| ATCATTTGCCATCAATCGTT+TGG | + | chr8.2:74353517-74353536 | MS.gene000556:CDS | 35.0% | |
| ATCTGCAATTGCAAGATTTC+TGG | - | chr8.2:74352424-74352443 | None:intergenic | 35.0% | |
| ATGAAATGCAAACTTCGATC+AGG | - | chr8.2:74352702-74352721 | None:intergenic | 35.0% | |
| CGATGTCGTTGCATATTTAA+CGG | + | chr8.2:74351748-74351767 | MS.gene000556:intron | 35.0% | |
| GAGATGAATGGTTCAATTGT+TGG | - | chr8.2:74352518-74352537 | None:intergenic | 35.0% | |
| GGATAATTTATACAGGAGCT+AGG | + | chr8.2:74352901-74352920 | MS.gene000556:intron | 35.0% | |
| GGCGAATTTCTCGAATTTAA+AGG | - | chr8.2:74351443-74351462 | None:intergenic | 35.0% | |
| GTTATGGCTTCATCTCTTAT+TGG | - | chr8.2:74352378-74352397 | None:intergenic | 35.0% | |
| TATAGGGAAATGCAGTTTCT+TGG | + | chr8.2:74352346-74352365 | MS.gene000556:intron | 35.0% | |
| TATGGGGAATTATTAGGTTC+CGG | + | chr8.2:74353042-74353061 | MS.gene000556:intron | 35.0% | |
| TCCCGTAAATGTAGTTCAAT+TGG | + | chr8.2:74352868-74352887 | MS.gene000556:intron | 35.0% | |
| TTATTGTCTTCTATACCCTC+CGG | - | chr8.2:74353064-74353083 | None:intergenic | 35.0% | |
| TTGTTGGAAGCTTATGTAGA+TGG | + | chr8.2:74353542-74353561 | MS.gene000556:CDS | 35.0% | |
| ! | AGTTCAATTGGTAGCTACTA+GGG | + | chr8.2:74352880-74352899 | MS.gene000556:intron | 35.0% |
| ! | TAACCTTTGATAGCCAATGA+AGG | - | chr8.2:74352740-74352759 | None:intergenic | 35.0% |
| ! | TAGTTCAATTGGTAGCTACT+AGG | + | chr8.2:74352879-74352898 | MS.gene000556:intron | 35.0% |
| ! | TGGACCAAATACTTTGTTTG+TGG | + | chr8.2:74352458-74352477 | MS.gene000556:CDS | 35.0% |
| !! | TTTTGAACACTAGTTTCTCG+AGG | - | chr8.2:74351509-74351528 | None:intergenic | 35.0% |
| AAAACCCAACACTGAGAGAA+GGG | + | chr8.2:74351525-74351544 | MS.gene000556:intron | 40.0% | |
| AATGAAGGCTGTAAGAGGAA+TGG | - | chr8.2:74352725-74352744 | None:intergenic | 40.0% | |
| ACACATTATGTGTGGAGAAG+TGG | - | chr8.2:74352945-74352964 | None:intergenic | 40.0% | |
| ACATTATGTGTGGAGAAGTG+GGG | - | chr8.2:74352943-74352962 | None:intergenic | 40.0% | |
| ATATCCCTTCTCTCAGTGTT+GGG | - | chr8.2:74351532-74351551 | None:intergenic | 40.0% | |
| ATTACCCAAGGAGAAACTGA+AGG | + | chr8.2:74353700-74353719 | MS.gene000556:CDS | 40.0% | |
| ATTCCTCTTACAGCCTTCAT+TGG | + | chr8.2:74352724-74352743 | MS.gene000556:CDS | 40.0% | |
| CAACAACTCCAAACGATTGA+TGG | - | chr8.2:74353528-74353547 | None:intergenic | 40.0% | |
| CACATTATGTGTGGAGAAGT+GGG | - | chr8.2:74352944-74352963 | None:intergenic | 40.0% | |
| CAGGTATGTGTGCGTATATA+AGG | + | chr8.2:74351284-74351303 | MS.gene000556:intron | 40.0% | |
| GAGTTGGAAGTTCTCAATGA+AGG | + | chr8.2:74353494-74353513 | MS.gene000556:CDS | 40.0% | |
| TAGATGGCTCAAGATATCCA+TGG | - | chr8.2:74351393-74351412 | None:intergenic | 40.0% | |
| TGCACGATTAATGAGAGCTA+TGG | + | chr8.2:74353595-74353614 | MS.gene000556:CDS | 40.0% | |
| TGGAAAATGTGTTGGAGTAG+AGG | - | chr8.2:74352404-74352423 | None:intergenic | 40.0% | |
| ! | ATGGGTCCTTGTTACTTCTT+TGG | + | chr8.2:74352645-74352664 | MS.gene000556:CDS | 40.0% |
| ! | CATCAATCGTTTGGAGTTGT+TGG | + | chr8.2:74353526-74353545 | MS.gene000556:CDS | 40.0% |
| ! | TCTTAATGGCATGGTCTTAG+AGG | + | chr8.2:74353294-74353313 | MS.gene000556:CDS | 40.0% |
| ! | TGGGTCCTTGTTACTTCTTT+GGG | + | chr8.2:74352646-74352665 | MS.gene000556:CDS | 40.0% |
| ! | TTGCTACTATTGGGAGCTTT+TGG | + | chr8.2:74353264-74353283 | MS.gene000556:CDS | 40.0% |
| !! | CTTTTGGCTGCTGTTCTTAA+TGG | + | chr8.2:74353280-74353299 | MS.gene000556:CDS | 40.0% |
| !! | GCAGATTTAGGTTGTTCTTC+TGG | + | chr8.2:74352438-74352457 | MS.gene000556:CDS | 40.0% |
| !! | TGCATGGTTCTAACAATGAG+TGG | + | chr8.2:74353205-74353224 | MS.gene000556:CDS | 40.0% |
| !! | TTTTCTCAAGTATCGTGCAG+AGG | + | chr8.2:74353165-74353184 | MS.gene000556:CDS | 40.0% |
| !! | TTTTTGGTCATGTAGCCTAG+TGG | - | chr8.2:74352978-74352997 | None:intergenic | 40.0% |
| AATGGCCTTCAGTTTCTCCT+TGG | - | chr8.2:74353708-74353727 | None:intergenic | 45.0% | |
| ATGGCCTTCAGTTTCTCCTT+GGG | - | chr8.2:74353707-74353726 | None:intergenic | 45.0% | |
| CAAAACCCAACACTGAGAGA+AGG | + | chr8.2:74351524-74351543 | MS.gene000556:intron | 45.0% | |
| CATATCCCTTCTCTCAGTGT+TGG | - | chr8.2:74351533-74351552 | None:intergenic | 45.0% | |
| CCAAAGTGGCTAACTACCAA+TGG | - | chr8.2:74353626-74353645 | None:intergenic | 45.0% | |
| CTATAGGCTATAGCATCTGC+TGG | + | chr8.2:74351643-74351662 | MS.gene000556:intron | 45.0% | |
| GGAACCCCAAAGAAGTAACA+AGG | - | chr8.2:74352654-74352673 | None:intergenic | 45.0% | |
| GGGAATTATTAGGTTCCGGA+GGG | + | chr8.2:74353046-74353065 | MS.gene000556:intron | 45.0% | |
| GTGCACATGAATGGAGGTAA+TGG | + | chr8.2:74351230-74351249 | MS.gene000556:CDS | 45.0% | |
| GTGCAGAGGAACTAGTTGAA+GGG | + | chr8.2:74353179-74353198 | MS.gene000556:CDS | 45.0% | |
| TAGCCAATGAAGGCTGTAAG+AGG | - | chr8.2:74352730-74352749 | None:intergenic | 45.0% | |
| TCTTGTACTCGGGAGATGAA+TGG | - | chr8.2:74352530-74352549 | None:intergenic | 45.0% | |
| TGCAGAGGAACTAGTTGAAG+GGG | + | chr8.2:74353180-74353199 | MS.gene000556:CDS | 45.0% | |
| TGTGTGTGAATCTAGCCACT+AGG | + | chr8.2:74352960-74352979 | MS.gene000556:intron | 45.0% | |
| ! | CAGCCTTCATTGGCTATCAA+AGG | + | chr8.2:74352734-74352753 | MS.gene000556:CDS | 45.0% |
| ! | CCATTGGTAGTTAGCCACTT+TGG | + | chr8.2:74353623-74353642 | MS.gene000556:CDS | 45.0% |
| ! | GGGTCCTTGTTACTTCTTTG+GGG | + | chr8.2:74352647-74352666 | MS.gene000556:CDS | 45.0% |
| !! | GTTGGAGTAGAGGCTTGTTA+TGG | - | chr8.2:74352394-74352413 | None:intergenic | 45.0% |
| !! | TGTTACTTCTTTGGGGTTCC+TGG | + | chr8.2:74352654-74352673 | MS.gene000556:CDS | 45.0% |
| !! | ATAAGTTATTTATTATTTAT+AGG | - | chr8.2:74353355-74353374 | None:intergenic | 5.0% |
| !!! | AACTTTTTATTTTTAAAAAA+AGG | + | chr8.2:74351716-74351735 | MS.gene000556:intron | 5.0% |
| ACTAGTTGAAGGGGGTTGCA+TGG | + | chr8.2:74353189-74353208 | MS.gene000556:CDS | 50.0% | |
| CAGGTAGTGCACATGAATGG+AGG | + | chr8.2:74351224-74351243 | MS.gene000556:CDS | 50.0% | |
| CGTGCAGAGGAACTAGTTGA+AGG | + | chr8.2:74353178-74353197 | MS.gene000556:CDS | 50.0% | |
| CTCTCAACCAAGTGACCTCT+CGG | - | chr8.2:74351473-74351492 | None:intergenic | 50.0% | |
| GAGAGCTATGGCTGAACCAT+TGG | + | chr8.2:74353607-74353626 | MS.gene000556:CDS | 50.0% | |
| GCAGAGGAACTAGTTGAAGG+GGG | + | chr8.2:74353181-74353200 | MS.gene000556:CDS | 50.0% | |
| GGACAGGTAGTGCACATGAA+TGG | + | chr8.2:74351221-74351240 | MS.gene000556:CDS | 50.0% | |
| GGCTGCTGTTCTTAATGGCA+TGG | + | chr8.2:74353285-74353304 | MS.gene000556:CDS | 50.0% | |
| GGGGAATTATTAGGTTCCGG+AGG | + | chr8.2:74353045-74353064 | MS.gene000556:intron | 50.0% | |
| TCTCAACCAAGTGACCTCTC+GGG | - | chr8.2:74351472-74351491 | None:intergenic | 50.0% | |
| AAGTGACCTCTCGGGAGACT+GGG | - | chr8.2:74351464-74351483 | None:intergenic | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+CGG | - | chr8.2:74352936-74352955 | None:intergenic | 55.0% | |
| TCATGTGCACTACCTGTCCC+AGG | - | chr8.2:74351220-74351239 | None:intergenic | 55.0% | |
| TGTGGAGAAGTGGGGAATCC+GGG | - | chr8.2:74352935-74352954 | None:intergenic | 55.0% | |
| AATTCGCCCAGTCTCCCGAG+AGG | + | chr8.2:74351455-74351474 | MS.gene000556:intron | 60.0% | |
| AGGAGCTAGGGTTCGAACCC+CGG | + | chr8.2:74352914-74352933 | MS.gene000556:intron | 60.0% | |
| CAAGTGACCTCTCGGGAGAC+TGG | - | chr8.2:74351465-74351484 | None:intergenic | 60.0% | |
| CAGTCTCCCGAGAGGTCACT+TGG | + | chr8.2:74351463-74351482 | MS.gene000556:intron | 60.0% | |
| GTGGAGAAGTGGGGAATCCG+GGG | - | chr8.2:74352934-74352953 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 74351212 | 74353763 | 74351212 | ID=MS.gene000556 |
| chr8.2 | mRNA | 74351212 | 74353763 | 74351212 | ID=MS.gene000556.t1;Parent=MS.gene000556 |
| chr8.2 | exon | 74351212 | 74351286 | 74351212 | ID=MS.gene000556.t1.exon1;Parent=MS.gene000556.t1 |
| chr8.2 | CDS | 74351212 | 74351286 | 74351212 | ID=cds.MS.gene000556.t1;Parent=MS.gene000556.t1 |
| chr8.2 | exon | 74352351 | 74352755 | 74352351 | ID=MS.gene000556.t1.exon2;Parent=MS.gene000556.t1 |
| chr8.2 | CDS | 74352351 | 74352755 | 74352351 | ID=cds.MS.gene000556.t1;Parent=MS.gene000556.t1 |
| chr8.2 | exon | 74353058 | 74353315 | 74353058 | ID=MS.gene000556.t1.exon3;Parent=MS.gene000556.t1 |
| chr8.2 | CDS | 74353058 | 74353315 | 74353058 | ID=cds.MS.gene000556.t1;Parent=MS.gene000556.t1 |
| chr8.2 | exon | 74353425 | 74353763 | 74353425 | ID=MS.gene000556.t1.exon4;Parent=MS.gene000556.t1 |
| chr8.2 | CDS | 74353425 | 74353763 | 74353425 | ID=cds.MS.gene000556.t1;Parent=MS.gene000556.t1 |
| Gene Sequence |
| Protein sequence |
