Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52320.t1 | XP_003624529.1 | 91.5 | 341 | 26 | 2 | 1 | 341 | 28 | 365 | 1.70E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52320.t1 | Q9AVK0 | 40.7 | 344 | 193 | 5 | 2 | 341 | 31 | 367 | 1.1e-67 | 258.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52320.t1 | G7KY96 | 91.5 | 341 | 26 | 2 | 1 | 341 | 28 | 365 | 1.2e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52320 | MS.gene010553 | PPI |
| MS.gene52320 | MS.gene73369 | PPI |
| MS.gene52320 | MS.gene25135 | PPI |
| MS.gene52320 | MS.gene024301 | PPI |
| MS.gene52320 | MS.gene037613 | PPI |
| MS.gene52320 | MS.gene049577 | PPI |
| MS.gene52320 | MS.gene033734 | PPI |
| MS.gene52320 | MS.gene024314 | PPI |
| MS.gene64697 | MS.gene52320 | PPI |
| MS.gene52320 | MS.gene59406 | PPI |
| MS.gene52320 | MS.gene033735 | PPI |
| MS.gene99450 | MS.gene52320 | PPI |
| MS.gene52320 | MS.gene52303 | PPI |
| MS.gene52320 | MS.gene73290 | PPI |
| MS.gene52320 | MS.gene014262 | PPI |
| MS.gene033748 | MS.gene52320 | PPI |
| MS.gene52320 | MS.gene76430 | PPI |
| MS.gene52320 | MS.gene008450 | PPI |
| MS.gene52320 | MS.gene063148 | PPI |
| MS.gene024301 | MS.gene52320 | PPI |
| MS.gene52320 | MS.gene68796 | PPI |
| MS.gene52320 | MS.gene024315 | PPI |
| MS.gene52320 | MS.gene012028 | PPI |
| MS.gene59406 | MS.gene52320 | PPI |
| MS.gene52320 | MS.gene000556 | PPI |
| MS.gene52320 | MS.gene033750 | PPI |
| MS.gene52320 | MS.gene87476 | PPI |
| MS.gene52320 | MS.gene02421 | PPI |
| MS.gene52320 | MS.gene07908 | PPI |
| MS.gene52320 | MS.gene024299 | PPI |
| MS.gene52320 | MS.gene68203 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52320.t1 | MTR_7g084350 | 91.496 | 341 | 26 | 2 | 1 | 341 | 28 | 365 | 0.0 | 643 |
| MS.gene52320.t1 | MTR_7g084620 | 71.137 | 343 | 90 | 5 | 1 | 341 | 30 | 365 | 2.98e-177 | 496 |
| MS.gene52320.t1 | MTR_3g467560 | 71.176 | 340 | 91 | 4 | 1 | 339 | 54 | 387 | 1.13e-175 | 493 |
| MS.gene52320.t1 | MTR_7g084330 | 67.055 | 343 | 89 | 6 | 1 | 341 | 13 | 333 | 2.28e-159 | 449 |
| MS.gene52320.t1 | MTR_3g117060 | 51.163 | 344 | 157 | 6 | 1 | 339 | 30 | 367 | 1.43e-114 | 337 |
| MS.gene52320.t1 | MTR_6g056070 | 40.373 | 322 | 170 | 5 | 25 | 341 | 53 | 357 | 1.31e-78 | 244 |
| MS.gene52320.t1 | MTR_8g076900 | 38.596 | 342 | 192 | 6 | 3 | 339 | 32 | 360 | 2.21e-77 | 241 |
| MS.gene52320.t1 | MTR_4g018820 | 38.192 | 343 | 189 | 8 | 3 | 339 | 32 | 357 | 4.15e-76 | 238 |
| MS.gene52320.t1 | MTR_5g020940 | 38.617 | 347 | 194 | 7 | 3 | 339 | 42 | 379 | 1.12e-75 | 238 |
| MS.gene52320.t1 | MTR_8g077040 | 38.272 | 324 | 184 | 5 | 27 | 341 | 54 | 370 | 2.22e-75 | 236 |
| MS.gene52320.t1 | MTR_1g022465 | 39.944 | 358 | 187 | 8 | 2 | 339 | 27 | 376 | 8.58e-75 | 235 |
| MS.gene52320.t1 | MTR_1g022455 | 41.104 | 326 | 174 | 6 | 27 | 339 | 57 | 377 | 5.89e-73 | 231 |
| MS.gene52320.t1 | MTR_3g467270 | 35.043 | 351 | 204 | 7 | 3 | 341 | 31 | 369 | 5.57e-72 | 228 |
| MS.gene52320.t1 | MTR_8g020700 | 39.009 | 323 | 172 | 5 | 3 | 319 | 32 | 335 | 3.81e-69 | 220 |
| MS.gene52320.t1 | MTR_5g046110 | 38.125 | 320 | 178 | 5 | 27 | 339 | 114 | 420 | 4.39e-65 | 212 |
| MS.gene52320.t1 | MTR_7g084340 | 81.667 | 120 | 22 | 0 | 221 | 340 | 11 | 130 | 8.41e-65 | 201 |
| MS.gene52320.t1 | MTR_8g020690 | 36.050 | 319 | 184 | 4 | 27 | 339 | 54 | 358 | 5.92e-64 | 207 |
| MS.gene52320.t1 | MTR_3g052700 | 35.762 | 302 | 175 | 7 | 27 | 317 | 71 | 364 | 3.97e-52 | 177 |
| MS.gene52320.t1 | MTR_8g076900 | 42.152 | 223 | 115 | 4 | 3 | 220 | 32 | 245 | 1.60e-51 | 172 |
| MS.gene52320.t1 | MTR_5g093900 | 33.846 | 325 | 194 | 8 | 27 | 338 | 73 | 389 | 1.03e-50 | 173 |
| MS.gene52320.t1 | MTR_8g020700 | 41.964 | 224 | 115 | 4 | 3 | 220 | 32 | 246 | 3.03e-49 | 166 |
| MS.gene52320.t1 | MTR_3g054330 | 35.974 | 303 | 174 | 8 | 27 | 317 | 63 | 357 | 3.16e-49 | 169 |
| MS.gene52320.t1 | MTR_1g108660 | 31.447 | 318 | 178 | 8 | 27 | 334 | 42 | 329 | 8.19e-49 | 167 |
| MS.gene52320.t1 | MTR_8g077030 | 30.717 | 293 | 111 | 9 | 27 | 317 | 54 | 256 | 1.72e-30 | 121 |
| MS.gene52320.t1 | MTR_6g015620 | 44.094 | 127 | 66 | 2 | 216 | 339 | 12 | 136 | 2.15e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52320.t1 | AT1G19640 | 38.889 | 360 | 193 | 8 | 4 | 340 | 33 | 388 | 9.89e-72 | 228 |
| MS.gene52320.t1 | AT5G66430 | 40.244 | 328 | 173 | 9 | 2 | 321 | 23 | 335 | 3.59e-68 | 218 |
| MS.gene52320.t1 | AT3G11480 | 38.750 | 320 | 173 | 5 | 26 | 339 | 76 | 378 | 3.38e-66 | 213 |
| MS.gene52320.t1 | AT5G38020 | 38.806 | 335 | 174 | 10 | 3 | 321 | 29 | 348 | 9.28e-66 | 212 |
| MS.gene52320.t1 | AT5G38020 | 39.198 | 324 | 166 | 10 | 14 | 321 | 1 | 309 | 8.11e-65 | 208 |
| MS.gene52320.t1 | AT4G36470 | 37.417 | 302 | 171 | 5 | 27 | 319 | 57 | 349 | 1.66e-62 | 204 |
| MS.gene52320.t1 | AT3G21950 | 39.414 | 307 | 158 | 7 | 24 | 315 | 49 | 342 | 3.42e-62 | 202 |
| MS.gene52320.t1 | AT5G04370 | 38.953 | 344 | 187 | 10 | 2 | 339 | 63 | 389 | 1.21e-60 | 199 |
| MS.gene52320.t1 | AT5G04370 | 38.953 | 344 | 187 | 10 | 2 | 339 | 68 | 394 | 1.65e-60 | 199 |
| MS.gene52320.t1 | AT5G04370 | 38.953 | 344 | 187 | 10 | 2 | 339 | 82 | 408 | 1.81e-60 | 199 |
| MS.gene52320.t1 | AT5G04380 | 35.474 | 327 | 190 | 6 | 6 | 326 | 64 | 375 | 2.36e-57 | 191 |
| MS.gene52320.t1 | AT5G04380 | 36.246 | 309 | 177 | 5 | 24 | 326 | 10 | 304 | 2.90e-57 | 188 |
| MS.gene52320.t1 | AT3G21950 | 35.988 | 339 | 157 | 8 | 24 | 315 | 49 | 374 | 2.71e-56 | 188 |
| MS.gene52320.t1 | AT2G14060 | 34.036 | 332 | 198 | 9 | 2 | 325 | 36 | 354 | 7.10e-53 | 179 |
| MS.gene52320.t1 | AT5G04380 | 34.557 | 327 | 186 | 7 | 6 | 326 | 60 | 364 | 2.84e-52 | 177 |
| MS.gene52320.t1 | AT1G15125 | 32.070 | 343 | 194 | 11 | 10 | 340 | 33 | 348 | 4.58e-49 | 168 |
| MS.gene52320.t1 | AT5G55250 | 32.188 | 320 | 198 | 7 | 6 | 314 | 9 | 320 | 8.81e-48 | 164 |
| MS.gene52320.t1 | AT5G55250 | 32.188 | 320 | 198 | 7 | 6 | 314 | 47 | 358 | 2.57e-47 | 164 |
| MS.gene52320.t1 | AT5G38780 | 30.857 | 350 | 199 | 9 | 2 | 335 | 36 | 358 | 1.23e-42 | 151 |
| MS.gene52320.t1 | AT5G38100 | 30.909 | 330 | 189 | 8 | 2 | 320 | 13 | 314 | 2.49e-42 | 150 |
| MS.gene52320.t1 | AT5G38780 | 31.118 | 331 | 187 | 8 | 21 | 335 | 4 | 309 | 2.50e-42 | 149 |
| MS.gene52320.t1 | AT5G38100 | 30.909 | 330 | 189 | 8 | 2 | 320 | 36 | 337 | 3.41e-42 | 150 |
| MS.gene52320.t1 | AT1G68040 | 31.268 | 339 | 191 | 13 | 10 | 336 | 49 | 357 | 8.96e-42 | 149 |
| MS.gene52320.t1 | AT5G37990 | 29.412 | 323 | 196 | 7 | 9 | 322 | 43 | 342 | 9.05e-42 | 149 |
| MS.gene52320.t1 | AT5G37970 | 30.031 | 323 | 194 | 6 | 9 | 322 | 43 | 342 | 1.06e-41 | 149 |
| MS.gene52320.t1 | AT2G14060 | 39.698 | 199 | 107 | 5 | 2 | 199 | 36 | 222 | 4.54e-38 | 136 |
| MS.gene52320.t1 | AT5G56300 | 28.267 | 329 | 204 | 9 | 26 | 336 | 68 | 382 | 9.62e-36 | 134 |
| MS.gene52320.t1 | AT4G26420 | 28.395 | 324 | 205 | 8 | 26 | 334 | 58 | 369 | 3.15e-34 | 129 |
| MS.gene52320.t1 | AT3G44870 | 29.276 | 304 | 176 | 8 | 17 | 312 | 43 | 315 | 2.58e-33 | 127 |
| MS.gene52320.t1 | AT3G44860 | 31.746 | 252 | 146 | 6 | 17 | 259 | 43 | 277 | 1.37e-31 | 122 |
| MS.gene52320.t1 | AT1G66720 | 28.125 | 320 | 189 | 8 | 2 | 312 | 35 | 322 | 4.76e-31 | 120 |
| MS.gene52320.t1 | AT1G15125 | 34.081 | 223 | 122 | 8 | 10 | 223 | 33 | 239 | 7.09e-31 | 117 |
| MS.gene52320.t1 | AT3G44840 | 28.956 | 297 | 169 | 10 | 27 | 312 | 53 | 318 | 1.77e-29 | 116 |
| MS.gene52320.t1 | AT1G66700 | 26.441 | 295 | 182 | 6 | 27 | 312 | 55 | 323 | 1.41e-28 | 114 |
| MS.gene52320.t1 | AT1G66690 | 28.477 | 302 | 167 | 8 | 27 | 312 | 55 | 323 | 1.91e-28 | 113 |
| MS.gene52320.t1 | AT5G38100 | 30.263 | 228 | 142 | 5 | 2 | 227 | 36 | 248 | 5.53e-24 | 99.0 |
| MS.gene52320.t1 | AT5G38100 | 30.263 | 228 | 142 | 5 | 2 | 227 | 36 | 248 | 5.87e-24 | 99.0 |
| MS.gene52320.t1 | AT4G26420 | 31.818 | 176 | 108 | 5 | 26 | 198 | 58 | 224 | 2.96e-21 | 92.0 |
| MS.gene52320.t1 | AT4G26420 | 31.818 | 176 | 108 | 5 | 26 | 198 | 46 | 212 | 3.82e-21 | 91.7 |
| MS.gene52320.t1 | AT1G66700 | 31.176 | 170 | 100 | 4 | 27 | 193 | 55 | 210 | 1.08e-18 | 84.7 |
Find 53 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTGGTTGAATATTT+TGG | 0.117266 | 7.3:+24174424 | None:intergenic |
| GATGAGTGGTTCTGCTTTCT+TGG | 0.159579 | 7.3:+24174411 | None:intergenic |
| ATAGATCATTGAGGTAAATT+TGG | 0.201496 | 7.3:+24175457 | None:intergenic |
| TTTAGTTGAAGAAGCAAAAT+TGG | 0.215168 | 7.3:-24173504 | MS.gene52320:CDS |
| GTGATGGTACTAACTTTAAT+TGG | 0.251253 | 7.3:-24174265 | MS.gene52320:CDS |
| TGTTGGAAAGTGGTCGATTT+AGG | 0.270953 | 7.3:-24175582 | MS.gene52320:CDS |
| TTCAGGACCAAATGCACTTA+TGG | 0.271528 | 7.3:-24175553 | MS.gene52320:CDS |
| CTCTTTCTTGTTGTATGCTT+TGG | 0.275064 | 7.3:+24175388 | None:intergenic |
| GATCAACAATATCTTCTTGC+AGG | 0.314712 | 7.3:+24173363 | None:intergenic |
| GTCGATTTAGGTTGTTCTTC+AGG | 0.326028 | 7.3:-24175570 | MS.gene52320:CDS |
| TCTATATCATCCTACTATAA+AGG | 0.359099 | 7.3:-24173465 | MS.gene52320:CDS |
| GAGACAACCATAAGTGCATT+TGG | 0.372630 | 7.3:+24175546 | None:intergenic |
| GAGGTTTATGTTGAGCAATT+TGG | 0.385082 | 7.3:-24174343 | MS.gene52320:CDS |
| TGTTTCACTTCCTTTATAGT+AGG | 0.392703 | 7.3:+24173455 | None:intergenic |
| TTTCTTGTTGTATGCTTTGG+TGG | 0.400091 | 7.3:+24175391 | None:intergenic |
| TTGAGGTAAATTTGGAATGT+TGG | 0.422713 | 7.3:+24175465 | None:intergenic |
| ATTCTTCCTATTGTGTCCAT+TGG | 0.424057 | 7.3:-24175278 | MS.gene52320:CDS |
| GAATTTGAAACTCATGATAT+CGG | 0.434571 | 7.3:-24175625 | MS.gene52320:CDS |
| TGTATGCTTTGGTGGAAATC+AGG | 0.436669 | 7.3:+24175399 | None:intergenic |
| TGATGGTACTAACTTTAATT+GGG | 0.439302 | 7.3:-24174264 | MS.gene52320:CDS |
| CGACCTTCTTTAAGGACACT+TGG | 0.439820 | 7.3:+24173154 | None:intergenic |
| AAACAAGTGATCGAGGTAGA+AGG | 0.446801 | 7.3:-24173437 | MS.gene52320:CDS |
| TGATAGCCAATGGACACAAT+AGG | 0.448336 | 7.3:+24175272 | None:intergenic |
| TAAAAGTCTTCAATGTTTGA+AGG | 0.454187 | 7.3:+24173405 | None:intergenic |
| AAAACAAGCTCTGTGATACT+TGG | 0.480684 | 7.3:+24173304 | None:intergenic |
| GAAAGCAGAACCACTCATCA+AGG | 0.487187 | 7.3:-24174407 | MS.gene52320:CDS |
| TTTATAGTAGGATGATATAG+AGG | 0.491881 | 7.3:+24173467 | None:intergenic |
| GAGCCCTCCATCAGTGTATG+AGG | 0.515233 | 7.3:-24174362 | MS.gene52320:CDS |
| CAAAGCATACAACAAGAAAG+AGG | 0.515542 | 7.3:-24175387 | MS.gene52320:CDS |
| TAATAGAAGTTGTTGGAAAG+TGG | 0.516903 | 7.3:-24175592 | MS.gene52320:CDS |
| GCATTTATGAAGCATGCTGC+AGG | 0.519201 | 7.3:+24175357 | None:intergenic |
| TTAAGCTTAAGCTTAAACCA+TGG | 0.519921 | 7.3:-24175492 | MS.gene52320:CDS |
| TCATGGATGAATTATTCTCA+AGG | 0.523360 | 7.3:-24173247 | MS.gene52320:CDS |
| TTTGGAATGTTGGTAGCCCA+TGG | 0.534549 | 7.3:+24175475 | None:intergenic |
| TAAGCTTAAGCTTAAACCAT+GGG | 0.548628 | 7.3:-24175491 | MS.gene52320:CDS |
| ACATAAACCTCATACACTGA+TGG | 0.557281 | 7.3:+24174355 | None:intergenic |
| TGCTTCATAAATGCAACACC+AGG | 0.570980 | 7.3:-24175348 | MS.gene52320:CDS |
| ACGATCGGAAGAACTAGCAT+TGG | 0.573764 | 7.3:-24174293 | MS.gene52320:CDS |
| TAAACCTCATACACTGATGG+AGG | 0.589347 | 7.3:+24174358 | None:intergenic |
| TGAGTTTGGTGAAAATATCA+TGG | 0.591260 | 7.3:-24173264 | MS.gene52320:CDS |
| AATCTTCCATAAAAGCTCCC+TGG | 0.601643 | 7.3:+24175330 | None:intergenic |
| ATCAGGTAGTAACTTCAAGA+TGG | 0.603639 | 7.3:+24175416 | None:intergenic |
| TACTTACTTGTGATAGCCAA+TGG | 0.607586 | 7.3:+24175262 | None:intergenic |
| GTCGTTGATAGCAAGATGAG+AGG | 0.620263 | 7.3:-24173338 | MS.gene52320:CDS |
| ACTAGCATTGGATGGTGTGA+TGG | 0.625972 | 7.3:-24174281 | MS.gene52320:CDS |
| TAGATATTACCCTTGATGAG+TGG | 0.628626 | 7.3:+24174397 | None:intergenic |
| TCGGAAGAACTAGCATTGGA+TGG | 0.630987 | 7.3:-24174289 | MS.gene52320:CDS |
| AAAGCAGAACCACTCATCAA+GGG | 0.632811 | 7.3:-24174406 | MS.gene52320:CDS |
| GGAAGTGAAACAAGTGATCG+AGG | 0.635174 | 7.3:-24173444 | MS.gene52320:CDS |
| AGGCATGGTACTCAACGAGA+TGG | 0.648975 | 7.3:-24174203 | MS.gene52320:CDS |
| AAACCTCATACACTGATGGA+GGG | 0.672473 | 7.3:+24174359 | None:intergenic |
| ACTCAACGAGATGGTCCAAG+AGG | 0.710119 | 7.3:-24174194 | MS.gene52320:intron |
| GCTTCATAAATGCAACACCA+GGG | 0.732882 | 7.3:-24175347 | MS.gene52320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCTATGTAATTAT+TGG | + | chr7.3:24173515-24173534 | None:intergenic | 10.0% |
| !! | AAAAAATCTATGTAATTATT+GGG | + | chr7.3:24173514-24173533 | None:intergenic | 10.0% |
| !! | TAAAATTATCAAACAAAAAA+TGG | + | chr7.3:24175078-24175097 | None:intergenic | 10.0% |
| !! | TTAATTTAATACAAAATACT+AGG | + | chr7.3:24174200-24174219 | None:intergenic | 10.0% |
| !! | TTATTATTTATCTATTTGAT+AGG | - | chr7.3:24174057-24174076 | MS.gene52320:intron | 10.0% |
| !!! | AGTTATATAGATTTTTTTTT+AGG | + | chr7.3:24174962-24174981 | None:intergenic | 10.0% |
| !!! | GTTATATAGATTTTTTTTTA+GGG | + | chr7.3:24174961-24174980 | None:intergenic | 10.0% |
| !! | AAATTTGAAGATCTTAAAAA+AGG | - | chr7.3:24173847-24173866 | MS.gene52320:intron | 15.0% |
| !! | ATACAAATGTAGTATAAAAA+GGG | - | chr7.3:24173909-24173928 | MS.gene52320:intron | 15.0% |
| !! | ATATTAACAAAGATACAAAT+TGG | + | chr7.3:24175176-24175195 | None:intergenic | 15.0% |
| !! | TAAAAAGAAGAATTCAAAAA+AGG | + | chr7.3:24175005-24175024 | None:intergenic | 15.0% |
| !! | TATACAAATGTAGTATAAAA+AGG | - | chr7.3:24173908-24173927 | MS.gene52320:intron | 15.0% |
| !! | AAAAAGGTTAATGCTTAATT+AGG | + | chr7.3:24174989-24175008 | None:intergenic | 20.0% |
| !! | AAAAGGTTAATGCTTAATTA+GGG | + | chr7.3:24174988-24175007 | None:intergenic | 20.0% |
| !! | AACACAATATTGAAAAAATC+TGG | + | chr7.3:24175632-24175651 | None:intergenic | 20.0% |
| !! | AATTAATCATATTTACCTCT+TGG | + | chr7.3:24174638-24174657 | None:intergenic | 20.0% |
| !! | ACAAAACATTATCTTTATTC+CGG | + | chr7.3:24175247-24175266 | None:intergenic | 20.0% |
| !! | ACAATACATAAAAAAAAGTG+GGG | + | chr7.3:24174089-24174108 | None:intergenic | 20.0% |
| !! | AGTAATAATACACAAATAGA+AGG | + | chr7.3:24173940-24173959 | None:intergenic | 20.0% |
| !! | CACAATACATAAAAAAAAGT+GGG | + | chr7.3:24174090-24174109 | None:intergenic | 20.0% |
| !! | GTAATAATACACAAATAGAA+GGG | + | chr7.3:24173939-24173958 | None:intergenic | 20.0% |
| !! | TCTATTGATCATCATATTAT+TGG | - | chr7.3:24175209-24175228 | MS.gene52320:intron | 20.0% |
| !!! | ACATTGAAGACTTTTAAAAT+CGG | - | chr7.3:24175416-24175435 | MS.gene52320:CDS | 20.0% |
| !!! | ATTGATGGTTTAAAACTATT+TGG | + | chr7.3:24173586-24173605 | None:intergenic | 20.0% |
| !!! | GATCTTGTTTTATTTGTTAA+TGG | - | chr7.3:24174353-24174372 | MS.gene52320:CDS | 20.0% |
| !!! | TCAAACTTTTCTATAATTGA+TGG | + | chr7.3:24173601-24173620 | None:intergenic | 20.0% |
| ! | AAATTGAGAACACGTAATTA+AGG | + | chr7.3:24174121-24174140 | None:intergenic | 25.0% |
| ! | ATAGATCATTGAGGTAAATT+TGG | + | chr7.3:24173360-24173379 | None:intergenic | 25.0% |
| ! | ATCAATTAAATTAGAGCTTG+TGG | - | chr7.3:24174830-24174849 | MS.gene52320:intron | 25.0% |
| ! | CCACAATACATAAAAAAAAG+TGG | + | chr7.3:24174091-24174110 | None:intergenic | 25.0% |
| ! | GGAATTTAACTCAATCATTT+AGG | - | chr7.3:24174313-24174332 | MS.gene52320:CDS | 25.0% |
| ! | TAAAAGTCTTCAATGTTTGA+AGG | + | chr7.3:24175412-24175431 | None:intergenic | 25.0% |
| ! | TCTATATCATCCTACTATAA+AGG | - | chr7.3:24175349-24175368 | MS.gene52320:CDS | 25.0% |
| ! | TGATGGTACTAACTTTAATT+GGG | - | chr7.3:24174550-24174569 | MS.gene52320:intron | 25.0% |
| ! | TTAATTGGGAGAGAAAAAAA+TGG | - | chr7.3:24174564-24174583 | MS.gene52320:intron | 25.0% |
| ! | TTTAGTTGAAGAAGCAAAAT+TGG | - | chr7.3:24175310-24175329 | MS.gene52320:CDS | 25.0% |
| ! | TTTATAGTAGGATGATATAG+AGG | + | chr7.3:24175350-24175369 | None:intergenic | 25.0% |
| ! | TTTGTTAATGGTGGTATATT+AGG | - | chr7.3:24174365-24174384 | MS.gene52320:CDS | 25.0% |
| !! | ACTAAATTTAAGACAAGTCA+AGG | + | chr7.3:24173770-24173789 | None:intergenic | 25.0% |
| !! | CATTTTCATATAGATCATTG+AGG | + | chr7.3:24173369-24173388 | None:intergenic | 25.0% |
| !! | GAATTTGAAACTCATGATAT+CGG | - | chr7.3:24173189-24173208 | MS.gene52320:CDS | 25.0% |
| !! | TGGTTTAAAACTATTTGGTT+TGG | + | chr7.3:24173581-24173600 | None:intergenic | 25.0% |
| !!! | CCACTTTTTTTTATGTATTG+TGG | - | chr7.3:24174088-24174107 | MS.gene52320:intron | 25.0% |
| !!! | CTTGTTTTATTTGTTAATGG+TGG | - | chr7.3:24174356-24174375 | MS.gene52320:CDS | 25.0% |
| AAATATTGTAAGAAGCGATC+AGG | + | chr7.3:24174884-24174903 | None:intergenic | 30.0% | |
| AATATTGTAAGAAGCGATCA+GGG | + | chr7.3:24174883-24174902 | None:intergenic | 30.0% | |
| CAAAGATACAAATTGGCAAT+AGG | + | chr7.3:24175169-24175188 | None:intergenic | 30.0% | |
| GTGATGGTACTAACTTTAAT+TGG | - | chr7.3:24174549-24174568 | MS.gene52320:intron | 30.0% | |
| TAAACCAAACGACTTTATCT+AGG | + | chr7.3:24174793-24174812 | None:intergenic | 30.0% | |
| TAAGCTTAAGCTTAAACCAT+GGG | - | chr7.3:24173323-24173342 | MS.gene52320:CDS | 30.0% | |
| TAATAGAAGTTGTTGGAAAG+TGG | - | chr7.3:24173222-24173241 | MS.gene52320:CDS | 30.0% | |
| TCATGGATGAATTATTCTCA+AGG | - | chr7.3:24175567-24175586 | MS.gene52320:CDS | 30.0% | |
| TGTTTCACTTCCTTTATAGT+AGG | + | chr7.3:24175362-24175381 | None:intergenic | 30.0% | |
| TTAAGCTTAAGCTTAAACCA+TGG | - | chr7.3:24173322-24173341 | MS.gene52320:CDS | 30.0% | |
| TTATTGGATGATCTAGATAC+CGG | - | chr7.3:24175225-24175244 | MS.gene52320:intron | 30.0% | |
| TTCTATAAAATTCCCCTGTA+GGG | - | chr7.3:24175287-24175306 | MS.gene52320:CDS | 30.0% | |
| TTTCTATAAAATTCCCCTGT+AGG | - | chr7.3:24175286-24175305 | MS.gene52320:CDS | 30.0% | |
| ! | ACAGGGGAATTTTATAGAAA+AGG | + | chr7.3:24175286-24175305 | None:intergenic | 30.0% |
| ! | CAGCTTTTAATAGAAGTTGT+TGG | - | chr7.3:24173215-24173234 | MS.gene52320:CDS | 30.0% |
| ! | GCTTTCTTGGTTGAATATTT+TGG | + | chr7.3:24174393-24174412 | None:intergenic | 30.0% |
| ! | TCTCTTTTAATAGCTGAGTT+TGG | - | chr7.3:24175536-24175555 | MS.gene52320:CDS | 30.0% |
| ! | TGAGTTTGGTGAAAATATCA+TGG | - | chr7.3:24175550-24175569 | MS.gene52320:CDS | 30.0% |
| ! | TGGTGAAATTACTTCTTTTG+AGG | - | chr7.3:24174584-24174603 | MS.gene52320:intron | 30.0% |
| ! | TTGAGGTAAATTTGGAATGT+TGG | + | chr7.3:24173352-24173371 | None:intergenic | 30.0% |
| !!! | ATTACTTCTTTTGAGGTACT+AGG | - | chr7.3:24174591-24174610 | MS.gene52320:intron | 30.0% |
| !!! | GAAGACTTTTAAAATCGGTT+GGG | - | chr7.3:24175421-24175440 | MS.gene52320:CDS | 30.0% |
| !!! | GTATTTTCTAAAGTCACGAT+CGG | - | chr7.3:24174506-24174525 | MS.gene52320:intron | 30.0% |
| !!! | TGAAGACTTTTAAAATCGGT+TGG | - | chr7.3:24175420-24175439 | MS.gene52320:CDS | 30.0% |
| AAAACAAGCTCTGTGATACT+TGG | + | chr7.3:24175513-24175532 | None:intergenic | 35.0% | |
| AACCCTTTCTAACTGACTAT+GGG | + | chr7.3:24174288-24174307 | None:intergenic | 35.0% | |
| ACATAAACCTCATACACTGA+TGG | + | chr7.3:24174462-24174481 | None:intergenic | 35.0% | |
| ATATTGTAAGAAGCGATCAG+GGG | + | chr7.3:24174882-24174901 | None:intergenic | 35.0% | |
| ATCAGGTAGTAACTTCAAGA+TGG | + | chr7.3:24173401-24173420 | None:intergenic | 35.0% | |
| ATTCTTCCTATTGTGTCCAT+TGG | - | chr7.3:24173536-24173555 | MS.gene52320:intron | 35.0% | |
| CAAACCTAGATAAAGTCGTT+TGG | - | chr7.3:24174786-24174805 | MS.gene52320:intron | 35.0% | |
| CAAAGCATACAACAAGAAAG+AGG | - | chr7.3:24173427-24173446 | MS.gene52320:CDS | 35.0% | |
| CACATATTTCATACACGATG+TGG | - | chr7.3:24175110-24175129 | MS.gene52320:intron | 35.0% | |
| GAGGTTTATGTTGAGCAATT+TGG | - | chr7.3:24174471-24174490 | MS.gene52320:intron | 35.0% | |
| GATCAACAATATCTTCTTGC+AGG | + | chr7.3:24175454-24175473 | None:intergenic | 35.0% | |
| TACTTACTTGTGATAGCCAA+TGG | + | chr7.3:24173555-24173574 | None:intergenic | 35.0% | |
| TAGAAAAGTTTGAGCTACTG+AGG | - | chr7.3:24173608-24173627 | MS.gene52320:intron | 35.0% | |
| TAGATATTACCCTTGATGAG+TGG | + | chr7.3:24174420-24174439 | None:intergenic | 35.0% | |
| TTCTTCAACTAAACCCTACA+GGG | + | chr7.3:24175303-24175322 | None:intergenic | 35.0% | |
| ! | CTCTTTCTTGTTGTATGCTT+TGG | + | chr7.3:24173429-24173448 | None:intergenic | 35.0% |
| ! | TTTCTTGTTGTATGCTTTGG+TGG | + | chr7.3:24173426-24173445 | None:intergenic | 35.0% |
| AAACAAGTGATCGAGGTAGA+AGG | - | chr7.3:24175377-24175396 | MS.gene52320:CDS | 40.0% | |
| AAACCTCATACACTGATGGA+GGG | + | chr7.3:24174458-24174477 | None:intergenic | 40.0% | |
| AAAGCAGAACCACTCATCAA+GGG | - | chr7.3:24174408-24174427 | MS.gene52320:CDS | 40.0% | |
| AATCTTCCATAAAAGCTCCC+TGG | + | chr7.3:24173487-24173506 | None:intergenic | 40.0% | |
| ACAGATACAAGTGAAGAGGT+CGG | - | chr7.3:24174759-24174778 | MS.gene52320:intron | 40.0% | |
| ACTCACAGATACAAGTGAAG+AGG | - | chr7.3:24174755-24174774 | MS.gene52320:intron | 40.0% | |
| ACTCCCATAGTCAGTTAGAA+AGG | - | chr7.3:24174282-24174301 | MS.gene52320:CDS | 40.0% | |
| CAACCCTTTCTAACTGACTA+TGG | + | chr7.3:24174289-24174308 | None:intergenic | 40.0% | |
| CTCCCATAGTCAGTTAGAAA+GGG | - | chr7.3:24174283-24174302 | MS.gene52320:CDS | 40.0% | |
| CTTCTTCAACTAAACCCTAC+AGG | + | chr7.3:24175304-24175323 | None:intergenic | 40.0% | |
| GAGACAACCATAAGTGCATT+TGG | + | chr7.3:24173271-24173290 | None:intergenic | 40.0% | |
| GCTTCATAAATGCAACACCA+GGG | - | chr7.3:24173467-24173486 | MS.gene52320:CDS | 40.0% | |
| TAAACCTCATACACTGATGG+AGG | + | chr7.3:24174459-24174478 | None:intergenic | 40.0% | |
| TCAGTTAGAAAGGGTTGAAG+AGG | - | chr7.3:24174292-24174311 | MS.gene52320:CDS | 40.0% | |
| TCTTCAACTAAACCCTACAG+GGG | + | chr7.3:24175302-24175321 | None:intergenic | 40.0% | |
| TGATAGCCAATGGACACAAT+AGG | + | chr7.3:24173545-24173564 | None:intergenic | 40.0% | |
| TGCTTCATAAATGCAACACC+AGG | - | chr7.3:24173466-24173485 | MS.gene52320:CDS | 40.0% | |
| TGTATGCTTTGGTGGAAATC+AGG | + | chr7.3:24173418-24173437 | None:intergenic | 40.0% | |
| TTCAGGACCAAATGCACTTA+TGG | - | chr7.3:24173261-24173280 | MS.gene52320:CDS | 40.0% | |
| TTTCTAACTGACTATGGGAG+TGG | + | chr7.3:24174283-24174302 | None:intergenic | 40.0% | |
| ! | TGTTGGAAAGTGGTCGATTT+AGG | - | chr7.3:24173232-24173251 | MS.gene52320:CDS | 40.0% |
| !! | GTCGATTTAGGTTGTTCTTC+AGG | - | chr7.3:24173244-24173263 | MS.gene52320:CDS | 40.0% |
| !!! | TTCTTTTGAGGTACTAGGCA+TGG | - | chr7.3:24174596-24174615 | MS.gene52320:intron | 40.0% |
| ACGATCGGAAGAACTAGCAT+TGG | - | chr7.3:24174521-24174540 | MS.gene52320:intron | 45.0% | |
| AGATACAAGTGAAGAGGTCG+GGG | - | chr7.3:24174761-24174780 | MS.gene52320:intron | 45.0% | |
| CAGATACAAGTGAAGAGGTC+GGG | - | chr7.3:24174760-24174779 | MS.gene52320:intron | 45.0% | |
| GAAAGCAGAACCACTCATCA+AGG | - | chr7.3:24174407-24174426 | MS.gene52320:CDS | 45.0% | |
| GCATTTATGAAGCATGCTGC+AGG | + | chr7.3:24173460-24173479 | None:intergenic | 45.0% | |
| GGAAGTGAAACAAGTGATCG+AGG | - | chr7.3:24175370-24175389 | MS.gene52320:CDS | 45.0% | |
| ! | ACTAGCATTGGATGGTGTGA+TGG | - | chr7.3:24174533-24174552 | MS.gene52320:intron | 45.0% |
| ! | GATGAGTGGTTCTGCTTTCT+TGG | + | chr7.3:24174406-24174425 | None:intergenic | 45.0% |
| ! | TCGGAAGAACTAGCATTGGA+TGG | - | chr7.3:24174525-24174544 | MS.gene52320:intron | 45.0% |
| !! | GTCGTTGATAGCAAGATGAG+AGG | - | chr7.3:24175476-24175495 | MS.gene52320:CDS | 45.0% |
| !! | TTTGGAATGTTGGTAGCCCA+TGG | + | chr7.3:24173342-24173361 | None:intergenic | 45.0% |
| !! | GTAAAAAAAAAAAAAATATT+CGG | + | chr7.3:24173687-24173706 | None:intergenic | 5.0% |
| !!! | AATAAAATTCTTTTTTTTTA+GGG | + | chr7.3:24173738-24173757 | None:intergenic | 5.0% |
| !!! | TAATAAAATTCTTTTTTTTT+AGG | + | chr7.3:24173739-24173758 | None:intergenic | 5.0% |
| ACTCAACGAGATGGTCCAAG+AGG | - | chr7.3:24174620-24174639 | MS.gene52320:intron | 50.0% | |
| AGGCATGGTACTCAACGAGA+TGG | - | chr7.3:24174611-24174630 | MS.gene52320:intron | 50.0% | |
| ! | GCAACACCAGGGAGCTTTTA+TGG | - | chr7.3:24173478-24173497 | MS.gene52320:CDS | 50.0% |
| GAGCCCTCCATCAGTGTATG+AGG | - | chr7.3:24174452-24174471 | MS.gene52320:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 24173163 | 24175673 | 24173163 | ID=MS.gene52320 |
| chr7.3 | mRNA | 24173163 | 24175673 | 24173163 | ID=MS.gene52320.t1;Parent=MS.gene52320 |
| chr7.3 | exon | 24175269 | 24175673 | 24175269 | ID=MS.gene52320.t1.exon1;Parent=MS.gene52320.t1 |
| chr7.3 | CDS | 24175269 | 24175673 | 24175269 | ID=cds.MS.gene52320.t1;Parent=MS.gene52320.t1 |
| chr7.3 | exon | 24174195 | 24174449 | 24174195 | ID=MS.gene52320.t1.exon2;Parent=MS.gene52320.t1 |
| chr7.3 | CDS | 24174195 | 24174449 | 24174195 | ID=cds.MS.gene52320.t1;Parent=MS.gene52320.t1 |
| chr7.3 | exon | 24173163 | 24173528 | 24173163 | ID=MS.gene52320.t1.exon3;Parent=MS.gene52320.t1 |
| chr7.3 | CDS | 24173163 | 24173528 | 24173163 | ID=cds.MS.gene52320.t1;Parent=MS.gene52320.t1 |
| Gene Sequence |
| Protein sequence |
