Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87476.t1 | XP_003629413.1 | 91.6 | 370 | 31 | 0 | 1 | 370 | 1 | 370 | 3.60E-193 | 684.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87476.t1 | Q9SPV4 | 58.8 | 371 | 135 | 5 | 1 | 368 | 1 | 356 | 2.4e-121 | 436.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87476.t1 | G7LDX4 | 91.6 | 370 | 31 | 0 | 1 | 370 | 1 | 370 | 2.6e-193 | 684.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053552 | MS.gene87476 | 0.813558 | 2.41E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87476.t1 | MTR_8g077040 | 95.676 | 370 | 16 | 0 | 1 | 370 | 1 | 370 | 0.0 | 738 |
| MS.gene87476.t1 | MTR_5g020940 | 71.545 | 369 | 104 | 1 | 1 | 368 | 11 | 379 | 0.0 | 570 |
| MS.gene87476.t1 | MTR_3g467270 | 70.811 | 370 | 107 | 1 | 1 | 370 | 1 | 369 | 0.0 | 556 |
| MS.gene87476.t1 | MTR_4g018820 | 70.924 | 368 | 96 | 2 | 1 | 368 | 1 | 357 | 0.0 | 538 |
| MS.gene87476.t1 | MTR_8g076900 | 67.935 | 368 | 110 | 1 | 1 | 368 | 1 | 360 | 0.0 | 523 |
| MS.gene87476.t1 | MTR_6g056070 | 63.073 | 371 | 122 | 3 | 1 | 370 | 1 | 357 | 5.51e-168 | 473 |
| MS.gene87476.t1 | MTR_8g020690 | 60.434 | 369 | 134 | 2 | 1 | 368 | 1 | 358 | 1.30e-161 | 457 |
| MS.gene87476.t1 | MTR_8g020700 | 59.350 | 369 | 135 | 2 | 1 | 368 | 1 | 355 | 2.73e-159 | 451 |
| MS.gene87476.t1 | MTR_8g076900 | 72.245 | 245 | 68 | 0 | 1 | 245 | 1 | 245 | 5.99e-129 | 370 |
| MS.gene87476.t1 | MTR_8g020700 | 63.922 | 255 | 91 | 1 | 1 | 254 | 1 | 255 | 9.66e-117 | 339 |
| MS.gene87476.t1 | MTR_3g117060 | 44.180 | 378 | 190 | 4 | 1 | 368 | 1 | 367 | 4.01e-113 | 334 |
| MS.gene87476.t1 | MTR_1g022465 | 44.531 | 384 | 189 | 7 | 1 | 368 | 1 | 376 | 2.90e-106 | 317 |
| MS.gene87476.t1 | MTR_3g467560 | 43.583 | 374 | 194 | 5 | 1 | 368 | 25 | 387 | 1.86e-104 | 313 |
| MS.gene87476.t1 | MTR_1g022455 | 44.271 | 384 | 191 | 6 | 1 | 368 | 1 | 377 | 2.07e-104 | 312 |
| MS.gene87476.t1 | MTR_5g046110 | 39.840 | 374 | 205 | 3 | 1 | 368 | 61 | 420 | 2.83e-99 | 301 |
| MS.gene87476.t1 | MTR_7g084620 | 41.316 | 380 | 198 | 8 | 1 | 370 | 1 | 365 | 3.55e-97 | 293 |
| MS.gene87476.t1 | MTR_8g077030 | 47.500 | 360 | 96 | 8 | 1 | 358 | 1 | 269 | 8.96e-97 | 298 |
| MS.gene87476.t1 | MTR_7g084350 | 37.234 | 376 | 217 | 5 | 3 | 370 | 1 | 365 | 1.21e-84 | 261 |
| MS.gene87476.t1 | MTR_7g084330 | 35.311 | 354 | 193 | 8 | 25 | 370 | 8 | 333 | 2.30e-64 | 208 |
| MS.gene87476.t1 | MTR_3g054330 | 35.890 | 365 | 198 | 12 | 1 | 346 | 10 | 357 | 1.98e-54 | 184 |
| MS.gene87476.t1 | MTR_1g108660 | 32.778 | 360 | 188 | 12 | 29 | 368 | 12 | 337 | 6.25e-52 | 176 |
| MS.gene87476.t1 | MTR_5g093900 | 32.737 | 391 | 225 | 11 | 1 | 367 | 13 | 389 | 1.33e-51 | 177 |
| MS.gene87476.t1 | MTR_3g052700 | 32.973 | 370 | 216 | 9 | 1 | 351 | 13 | 369 | 4.79e-50 | 172 |
| MS.gene87476.t1 | MTR_6g015620 | 32.000 | 125 | 74 | 2 | 248 | 368 | 19 | 136 | 9.50e-16 | 73.9 |
| MS.gene87476.t1 | MTR_7g084340 | 30.597 | 134 | 85 | 2 | 237 | 368 | 2 | 129 | 9.69e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87476.t1 | AT1G19640 | 44.730 | 389 | 192 | 7 | 1 | 368 | 1 | 387 | 1.23e-99 | 300 |
| MS.gene87476.t1 | AT3G11480 | 41.892 | 370 | 191 | 6 | 5 | 368 | 27 | 378 | 7.44e-98 | 296 |
| MS.gene87476.t1 | AT5G66430 | 40.884 | 362 | 203 | 5 | 9 | 368 | 1 | 353 | 9.50e-95 | 287 |
| MS.gene87476.t1 | AT4G36470 | 41.379 | 377 | 191 | 7 | 7 | 369 | 10 | 370 | 1.57e-94 | 287 |
| MS.gene87476.t1 | AT5G04370 | 42.507 | 367 | 190 | 6 | 7 | 368 | 39 | 389 | 1.47e-93 | 285 |
| MS.gene87476.t1 | AT5G04370 | 42.507 | 367 | 190 | 6 | 7 | 368 | 58 | 408 | 2.48e-93 | 285 |
| MS.gene87476.t1 | AT5G04370 | 42.507 | 367 | 190 | 6 | 7 | 368 | 44 | 394 | 2.48e-93 | 285 |
| MS.gene87476.t1 | AT5G38020 | 42.049 | 371 | 201 | 6 | 6 | 368 | 3 | 367 | 6.46e-91 | 278 |
| MS.gene87476.t1 | AT3G21950 | 40.945 | 381 | 191 | 7 | 6 | 368 | 3 | 367 | 3.36e-89 | 273 |
| MS.gene87476.t1 | AT5G04380 | 39.946 | 368 | 202 | 6 | 6 | 368 | 35 | 388 | 1.01e-88 | 273 |
| MS.gene87476.t1 | AT5G04380 | 39.402 | 368 | 197 | 7 | 6 | 368 | 31 | 377 | 1.18e-84 | 262 |
| MS.gene87476.t1 | AT3G21950 | 38.329 | 407 | 197 | 9 | 6 | 368 | 3 | 399 | 2.70e-83 | 259 |
| MS.gene87476.t1 | AT5G04380 | 40.062 | 322 | 181 | 4 | 48 | 368 | 7 | 317 | 3.58e-82 | 253 |
| MS.gene87476.t1 | AT2G14060 | 36.729 | 373 | 214 | 5 | 6 | 368 | 11 | 371 | 9.57e-82 | 254 |
| MS.gene87476.t1 | AT5G38020 | 41.818 | 330 | 179 | 5 | 46 | 368 | 5 | 328 | 1.10e-81 | 253 |
| MS.gene87476.t1 | AT1G68040 | 35.135 | 370 | 201 | 8 | 3 | 359 | 7 | 350 | 6.88e-65 | 210 |
| MS.gene87476.t1 | AT2G14060 | 42.544 | 228 | 127 | 2 | 6 | 232 | 11 | 235 | 4.61e-63 | 202 |
| MS.gene87476.t1 | AT5G55250 | 34.688 | 369 | 196 | 12 | 1 | 345 | 13 | 360 | 1.96e-57 | 192 |
| MS.gene87476.t1 | AT1G15125 | 31.467 | 375 | 214 | 11 | 9 | 368 | 1 | 347 | 3.43e-50 | 172 |
| MS.gene87476.t1 | AT5G55250 | 33.742 | 326 | 175 | 9 | 41 | 345 | 17 | 322 | 1.11e-49 | 171 |
| MS.gene87476.t1 | AT5G38100 | 33.795 | 361 | 194 | 9 | 4 | 348 | 5 | 336 | 2.31e-49 | 170 |
| MS.gene87476.t1 | AT5G37990 | 33.850 | 387 | 202 | 14 | 5 | 368 | 6 | 361 | 3.03e-49 | 170 |
| MS.gene87476.t1 | AT5G38780 | 32.782 | 363 | 197 | 10 | 4 | 348 | 5 | 338 | 2.86e-48 | 167 |
| MS.gene87476.t1 | AT4G26420 | 34.711 | 363 | 197 | 13 | 3 | 344 | 7 | 350 | 9.73e-48 | 166 |
| MS.gene87476.t1 | AT5G37970 | 31.688 | 385 | 213 | 10 | 5 | 368 | 6 | 361 | 3.67e-47 | 164 |
| MS.gene87476.t1 | AT5G38100 | 34.891 | 321 | 167 | 8 | 41 | 348 | 22 | 313 | 7.85e-47 | 162 |
| MS.gene87476.t1 | AT5G38780 | 34.185 | 313 | 163 | 9 | 50 | 348 | 6 | 289 | 2.20e-46 | 160 |
| MS.gene87476.t1 | AT5G56300 | 30.919 | 359 | 213 | 10 | 5 | 345 | 20 | 361 | 2.41e-46 | 162 |
| MS.gene87476.t1 | AT3G44840 | 32.410 | 361 | 197 | 10 | 3 | 348 | 1 | 329 | 4.12e-44 | 156 |
| MS.gene87476.t1 | AT3G44860 | 36.364 | 286 | 163 | 6 | 3 | 281 | 1 | 274 | 3.60e-41 | 148 |
| MS.gene87476.t1 | AT3G44870 | 36.014 | 286 | 161 | 7 | 3 | 281 | 1 | 271 | 2.25e-40 | 147 |
| MS.gene87476.t1 | AT4G26420 | 38.528 | 231 | 118 | 8 | 3 | 220 | 7 | 226 | 8.78e-39 | 139 |
| MS.gene87476.t1 | AT1G66720 | 32.667 | 300 | 173 | 10 | 9 | 294 | 9 | 293 | 3.20e-38 | 140 |
| MS.gene87476.t1 | AT1G66700 | 32.082 | 293 | 157 | 7 | 9 | 281 | 9 | 279 | 2.54e-37 | 138 |
| MS.gene87476.t1 | AT4G26420 | 38.667 | 225 | 114 | 8 | 9 | 220 | 1 | 214 | 3.75e-37 | 135 |
| MS.gene87476.t1 | AT5G38100 | 38.565 | 223 | 113 | 6 | 4 | 213 | 5 | 216 | 2.43e-35 | 130 |
| MS.gene87476.t1 | AT5G38100 | 38.565 | 223 | 113 | 6 | 4 | 213 | 5 | 216 | 2.48e-35 | 130 |
| MS.gene87476.t1 | AT1G15125 | 35.616 | 219 | 118 | 7 | 9 | 217 | 1 | 206 | 1.05e-33 | 125 |
| MS.gene87476.t1 | AT1G66690 | 32.107 | 299 | 165 | 7 | 1 | 281 | 1 | 279 | 1.03e-32 | 125 |
| MS.gene87476.t1 | AT1G66700 | 31.907 | 257 | 133 | 7 | 9 | 245 | 9 | 243 | 9.55e-30 | 115 |
Find 72 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTC+TGG | 0.124180 | 8.3:+27061800 | MS.gene87476:CDS |
| TCTGCAATTCCTAAGCTATT+TGG | 0.193298 | 8.3:-27061782 | None:intergenic |
| CAGCCTTATGTGGCTATCTA+AGG | 0.259712 | 8.3:+27062096 | MS.gene87476:CDS |
| GGAGTTCCTGGTTCTTTCTA+TGG | 0.263034 | 8.3:+27062028 | MS.gene87476:CDS |
| GTTCAAGAAAACCTTGTATT+CGG | 0.272656 | 8.3:-27061900 | None:intergenic |
| GCAAGGAGTGTTGCTACATT+TGG | 0.284975 | 8.3:+27062628 | MS.gene87476:CDS |
| TTGCTACATTTGGGAACTTA+TGG | 0.286140 | 8.3:+27062638 | MS.gene87476:CDS |
| GATTATGGCTTCTTCTCTAA+TGG | 0.308035 | 8.3:-27061738 | None:intergenic |
| CTGCAATTCCTAAGCTATTT+GGG | 0.311964 | 8.3:-27061781 | None:intergenic |
| TGCTATATATCTGGAGTTCC+TGG | 0.312996 | 8.3:+27062016 | MS.gene87476:CDS |
| TCTTAATGATATGGTCTTGC+AGG | 0.323770 | 8.3:+27062668 | MS.gene87476:CDS |
| GGAGAATGTGAACAACAATA+AGG | 0.339279 | 8.3:+27062440 | MS.gene87476:CDS |
| GGCTATAGCTCTTAATGATA+TGG | 0.347430 | 8.3:+27062659 | MS.gene87476:CDS |
| TTCTGGACCAAACACTTTGT+TGG | 0.351191 | 8.3:+27061817 | MS.gene87476:CDS |
| ACAAAATGCAAACTTTGATT+AGG | 0.356644 | 8.3:-27062061 | None:intergenic |
| ATGGATCAGTGCTATATATC+TGG | 0.358943 | 8.3:+27062007 | MS.gene87476:CDS |
| GTGTCCATCGGAAGTGAAAT+TGG | 0.373571 | 8.3:+27063171 | MS.gene87476:CDS |
| CAAGGAGTGTTGCTACATTT+GGG | 0.384196 | 8.3:+27062629 | MS.gene87476:CDS |
| TTCAAGAAAACCTTGTATTC+GGG | 0.384731 | 8.3:-27061899 | None:intergenic |
| ACTGCAGTAGAGACTGATTA+TGG | 0.397183 | 8.3:-27061753 | None:intergenic |
| ATCATTTACCATCGATCGAT+TGG | 0.399987 | 8.3:+27063210 | MS.gene87476:CDS |
| TGCAAACAACTCCTTAGTTC+AGG | 0.408183 | 8.3:+27061438 | MS.gene87476:CDS |
| TTCCTGGTTCTTTCTATGGC+AGG | 0.412204 | 8.3:+27062032 | MS.gene87476:CDS |
| TCATTTACCATCGATCGATT+GGG | 0.423277 | 8.3:+27063211 | MS.gene87476:CDS |
| TTATTGTTGTTCACATTCTC+CGG | 0.423470 | 8.3:-27062438 | None:intergenic |
| ATCAGAATTTATCAAGGTTG+TGG | 0.432422 | 8.3:+27061844 | MS.gene87476:CDS |
| AGGATTTCTAGTCAATAATA+CGG | 0.440066 | 8.3:-27063470 | None:intergenic |
| GATACCACCAACAAAGTGTT+TGG | 0.447192 | 8.3:-27061824 | None:intergenic |
| CGGTGAAACAGAAACTGAAA+TGG | 0.452252 | 8.3:+27061988 | MS.gene87476:CDS |
| CCTTTGCTAATTAGCCACTT+TGG | 0.456393 | 8.3:+27063358 | MS.gene87476:CDS |
| TATGCATTAAGTACATTTGA+GGG | 0.463714 | 8.3:-27062489 | None:intergenic |
| GAGAATGTGAACAACAATAA+GGG | 0.486332 | 8.3:+27062441 | MS.gene87476:CDS |
| ATTGGAATGCTCTCGATCAA+TGG | 0.490851 | 8.3:+27063248 | MS.gene87476:CDS |
| TAGCTTAGGAATTGCAGACT+TGG | 0.496344 | 8.3:+27061787 | MS.gene87476:CDS |
| GTATGCATTAAGTACATTTG+AGG | 0.501880 | 8.3:-27062490 | None:intergenic |
| ATCAAGAAATCTTAGTTGAC+CGG | 0.504524 | 8.3:+27063413 | MS.gene87476:CDS |
| TGGACCAAACACTTTGTTGG+TGG | 0.504941 | 8.3:+27061820 | MS.gene87476:CDS |
| AGCTTAGGAATTGCAGACTT+GGG | 0.505553 | 8.3:+27061788 | MS.gene87476:CDS |
| GGTGGTATCAGAATTTATCA+AGG | 0.507106 | 8.3:+27061838 | MS.gene87476:CDS |
| TAGCCACATAAGGCTGTAAG+AGG | 0.511113 | 8.3:-27062089 | None:intergenic |
| TCGTGAATCTCCCGAATACA+AGG | 0.518497 | 8.3:+27061889 | MS.gene87476:CDS |
| ATTCCTCTTACAGCCTTATG+TGG | 0.518669 | 8.3:+27062086 | MS.gene87476:CDS |
| ATGGACACGGAGTGTATTGA+GGG | 0.523168 | 8.3:-27063156 | None:intergenic |
| CATTTACCATCGATCGATTG+GGG | 0.529876 | 8.3:+27063212 | MS.gene87476:CDS |
| CGTGCAGAGGAAGTAGTTGA+AGG | 0.533351 | 8.3:+27062555 | MS.gene87476:CDS |
| AAACCTTAGATAGCCACATA+AGG | 0.534886 | 8.3:-27062099 | None:intergenic |
| AGTACATACCCAAATAGCTT+AGG | 0.536677 | 8.3:+27061773 | MS.gene87476:CDS |
| ACTTCCAATTTCACTTCCGA+TGG | 0.537214 | 8.3:-27063175 | None:intergenic |
| TCACAAGTACTGCACATGAA+TGG | 0.538311 | 8.3:+27061394 | MS.gene87476:CDS |
| GATGGACACGGAGTGTATTG+AGG | 0.546758 | 8.3:-27063157 | None:intergenic |
| ATTCATGTATACCTGAACTA+AGG | 0.548252 | 8.3:-27061449 | None:intergenic |
| CAATAAGGGAAACATTTACA+TGG | 0.550411 | 8.3:+27062455 | MS.gene87476:CDS |
| AAATTGGAAGTTCTCAAAGA+AGG | 0.571795 | 8.3:+27063187 | MS.gene87476:CDS |
| ACATAAGGCTGTAAGAGGAA+TGG | 0.572052 | 8.3:-27062084 | None:intergenic |
| CTGCACATGAATGGAGGTGT+TGG | 0.572205 | 8.3:+27061403 | MS.gene87476:CDS |
| ATGTTATTGAAGTCGTTACC+CGG | 0.575424 | 8.3:-27061929 | None:intergenic |
| GTGCAGAGGAAGTAGTTGAA+GGG | 0.581334 | 8.3:+27062556 | MS.gene87476:CDS |
| ATGTCTGAATCACTCGGCGA+TGG | 0.582272 | 8.3:+27063295 | MS.gene87476:CDS |
| AATTAGCAAAGGTTCAGAAA+CGG | 0.583320 | 8.3:-27063347 | None:intergenic |
| AATTTCACTTCCGATGGACA+CGG | 0.587997 | 8.3:-27063169 | None:intergenic |
| TCAATACACTCCGTGTCCAT+CGG | 0.588900 | 8.3:+27063159 | MS.gene87476:CDS |
| CCAAAGTGGCTAATTAGCAA+AGG | 0.591173 | 8.3:-27063358 | None:intergenic |
| CTTAGTTGACCGGATGTCCA+AGG | 0.605277 | 8.3:+27063423 | MS.gene87476:CDS |
| ATCCTGCCATAGAAAGAACC+AGG | 0.607110 | 8.3:-27062034 | None:intergenic |
| TGCAGAGGAAGTAGTTGAAG+GGG | 0.612981 | 8.3:+27062557 | MS.gene87476:CDS |
| CAATGATAGACTCTCCAAAG+TGG | 0.620746 | 8.3:-27063372 | None:intergenic |
| TCTCAAATGTCTGAATCACT+CGG | 0.620788 | 8.3:+27063289 | MS.gene87476:CDS |
| AAGTGACAAGATGTATAGCA+AGG | 0.623819 | 8.3:+27062611 | MS.gene87476:CDS |
| ATGCATTAAGTACATTTGAG+GGG | 0.624171 | 8.3:-27062488 | None:intergenic |
| ATTTACCATCGATCGATTGG+GGG | 0.660045 | 8.3:+27063213 | MS.gene87476:CDS |
| CAAGTACTGCACATGAATGG+AGG | 0.661451 | 8.3:+27061397 | MS.gene87476:CDS |
| GCAGAGGAAGTAGTTGAAGG+GGG | 0.713278 | 8.3:+27062558 | MS.gene87476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATATTTTTTTTTTAA+GGG | + | chr8.3:27061639-27061658 | MS.gene87476:intron | 0.0% |
| !! | ATTATATATGAACACATAAT+AGG | - | chr8.3:27061520-27061539 | None:intergenic | 15.0% |
| !! | GAAATTACATATTAATATCT+TGG | - | chr8.3:27063081-27063100 | None:intergenic | 15.0% |
| !! | AATGCTATATATAACAGAAT+CGG | - | chr8.3:27061548-27061567 | None:intergenic | 20.0% |
| !! | GTAAATGTATATGTTGTTAT+TGG | + | chr8.3:27062768-27062787 | MS.gene87476:intron | 20.0% |
| !! | TAAAATATGCACTATCTTTA+GGG | + | chr8.3:27062945-27062964 | MS.gene87476:intron | 20.0% |
| !! | TTAAAATATGCACTATCTTT+AGG | + | chr8.3:27062944-27062963 | MS.gene87476:intron | 20.0% |
| !! | TTAATTATATTTAGGGACAA+AGG | + | chr8.3:27063005-27063024 | MS.gene87476:intron | 20.0% |
| !!! | GTTTTTGTAATTGATGTAAT+TGG | + | chr8.3:27061678-27061697 | MS.gene87476:intron | 20.0% |
| !!! | TATGTAATTTCTTTTCTATG+TGG | + | chr8.3:27063090-27063109 | MS.gene87476:intron | 20.0% |
| ! | ACAAAATGCAAACTTTGATT+AGG | - | chr8.3:27062064-27062083 | None:intergenic | 25.0% |
| ! | ACCACTAACACATTATATTT+AGG | - | chr8.3:27062707-27062726 | None:intergenic | 25.0% |
| ! | ATGCTATATATAACAGAATC+GGG | - | chr8.3:27061547-27061566 | None:intergenic | 25.0% |
| ! | TATGCATTAAGTACATTTGA+GGG | - | chr8.3:27062492-27062511 | None:intergenic | 25.0% |
| ! | TCCTAAATATAATGTGTTAG+TGG | + | chr8.3:27062703-27062722 | MS.gene87476:intron | 25.0% |
| !! | ACTTTATTATTTTCAGCTAG+AGG | - | chr8.3:27061608-27061627 | None:intergenic | 25.0% |
| !! | ATTTCTTTTCTATGTGGATT+AGG | + | chr8.3:27063096-27063115 | MS.gene87476:intron | 25.0% |
| !! | CTTTATTATTTTCAGCTAGA+GGG | - | chr8.3:27061607-27061626 | None:intergenic | 25.0% |
| !!! | AGGATTTCTAGTCAATAATA+CGG | - | chr8.3:27063473-27063492 | None:intergenic | 25.0% |
| !!! | GAGAAAAATCTCTTTGAAAT+TGG | - | chr8.3:27062521-27062540 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTCTTAGTCAA+TGG | + | chr8.3:27062151-27062170 | MS.gene87476:intron | 25.0% |
| !!! | TTTCTTTTCTATGTGGATTA+GGG | + | chr8.3:27063097-27063116 | MS.gene87476:intron | 25.0% |
| AAATTGGAAGTTCTCAAAGA+AGG | + | chr8.3:27063187-27063206 | MS.gene87476:CDS | 30.0% | |
| AATTAGCAAAGGTTCAGAAA+CGG | - | chr8.3:27063350-27063369 | None:intergenic | 30.0% | |
| ATCAAGAAATCTTAGTTGAC+CGG | + | chr8.3:27063413-27063432 | MS.gene87476:CDS | 30.0% | |
| ATCAGAATTTATCAAGGTTG+TGG | + | chr8.3:27061844-27061863 | MS.gene87476:CDS | 30.0% | |
| ATGCATTAAGTACATTTGAG+GGG | - | chr8.3:27062491-27062510 | None:intergenic | 30.0% | |
| ATTCATGTATACCTGAACTA+AGG | - | chr8.3:27061452-27061471 | None:intergenic | 30.0% | |
| CAATAAGGGAAACATTTACA+TGG | + | chr8.3:27062455-27062474 | MS.gene87476:CDS | 30.0% | |
| GAGAATGTGAACAACAATAA+GGG | + | chr8.3:27062441-27062460 | MS.gene87476:CDS | 30.0% | |
| GTATGCATTAAGTACATTTG+AGG | - | chr8.3:27062493-27062512 | None:intergenic | 30.0% | |
| GTTCAAGAAAACCTTGTATT+CGG | - | chr8.3:27061903-27061922 | None:intergenic | 30.0% | |
| TTCAAGAAAACCTTGTATTC+GGG | - | chr8.3:27061902-27061921 | None:intergenic | 30.0% | |
| ! | ATCAAGCTTCTCTTCTTTTA+TGG | - | chr8.3:27063125-27063144 | None:intergenic | 30.0% |
| ! | CGCATGATTCTAACATTTTT+AGG | + | chr8.3:27062582-27062601 | MS.gene87476:CDS | 30.0% |
| ! | TTATTGTTGTTCACATTCTC+CGG | - | chr8.3:27062441-27062460 | None:intergenic | 30.0% |
| !! | TTGTTGGTTGGTGATTATTT+AGG | + | chr8.3:27062413-27062432 | MS.gene87476:intron | 30.0% |
| AAACCTTAGATAGCCACATA+AGG | - | chr8.3:27062102-27062121 | None:intergenic | 35.0% | |
| AACTTCAAAAAGAGACTGCA+CGG | + | chr8.3:27061968-27061987 | MS.gene87476:CDS | 35.0% | |
| AAGTGACAAGATGTATAGCA+AGG | + | chr8.3:27062611-27062630 | MS.gene87476:CDS | 35.0% | |
| AGTACATACCCAAATAGCTT+AGG | + | chr8.3:27061773-27061792 | MS.gene87476:CDS | 35.0% | |
| ATCATTTACCATCGATCGAT+TGG | + | chr8.3:27063210-27063229 | MS.gene87476:CDS | 35.0% | |
| ATGGATCAGTGCTATATATC+TGG | + | chr8.3:27062007-27062026 | MS.gene87476:CDS | 35.0% | |
| ATGTTATTGAAGTCGTTACC+CGG | - | chr8.3:27061932-27061951 | None:intergenic | 35.0% | |
| CTGCAATTCCTAAGCTATTT+GGG | - | chr8.3:27061784-27061803 | None:intergenic | 35.0% | |
| GATTATGGCTTCTTCTCTAA+TGG | - | chr8.3:27061741-27061760 | None:intergenic | 35.0% | |
| GGAGAATGTGAACAACAATA+AGG | + | chr8.3:27062440-27062459 | MS.gene87476:CDS | 35.0% | |
| GGCTATAGCTCTTAATGATA+TGG | + | chr8.3:27062659-27062678 | MS.gene87476:CDS | 35.0% | |
| GGTGGTATCAGAATTTATCA+AGG | + | chr8.3:27061838-27061857 | MS.gene87476:CDS | 35.0% | |
| TCATTTACCATCGATCGATT+GGG | + | chr8.3:27063211-27063230 | MS.gene87476:CDS | 35.0% | |
| TCTCAAATGTCTGAATCACT+CGG | + | chr8.3:27063289-27063308 | MS.gene87476:CDS | 35.0% | |
| TCTGCAATTCCTAAGCTATT+TGG | - | chr8.3:27061785-27061804 | None:intergenic | 35.0% | |
| TTGCTACATTTGGGAACTTA+TGG | + | chr8.3:27062638-27062657 | MS.gene87476:CDS | 35.0% | |
| ! | TCTTAATGATATGGTCTTGC+AGG | + | chr8.3:27062668-27062687 | MS.gene87476:CDS | 35.0% |
| ! | TGGAGAACATTTTTGTTGGT+TGG | + | chr8.3:27062401-27062420 | MS.gene87476:intron | 35.0% |
| !! | ATGGTGGAGAACATTTTTGT+TGG | + | chr8.3:27062397-27062416 | MS.gene87476:intron | 35.0% |
| !! | GACAAACTTAGTTTTCTCCT+TGG | - | chr8.3:27063443-27063462 | None:intergenic | 35.0% |
| !! | GTTGGTGATTATTTAGGTTC+CGG | + | chr8.3:27062419-27062438 | MS.gene87476:intron | 35.0% |
| AATTTCACTTCCGATGGACA+CGG | - | chr8.3:27063172-27063191 | None:intergenic | 40.0% | |
| ACATAAGGCTGTAAGAGGAA+TGG | - | chr8.3:27062087-27062106 | None:intergenic | 40.0% | |
| ACTGCAGTAGAGACTGATTA+TGG | - | chr8.3:27061756-27061775 | None:intergenic | 40.0% | |
| ACTTCCAATTTCACTTCCGA+TGG | - | chr8.3:27063178-27063197 | None:intergenic | 40.0% | |
| AGCTTAGGAATTGCAGACTT+GGG | + | chr8.3:27061788-27061807 | MS.gene87476:CDS | 40.0% | |
| ATTGGAATGCTCTCGATCAA+TGG | + | chr8.3:27063248-27063267 | MS.gene87476:CDS | 40.0% | |
| ATTTACCATCGATCGATTGG+GGG | + | chr8.3:27063213-27063232 | MS.gene87476:CDS | 40.0% | |
| CAATGATAGACTCTCCAAAG+TGG | - | chr8.3:27063375-27063394 | None:intergenic | 40.0% | |
| CATTTACCATCGATCGATTG+GGG | + | chr8.3:27063212-27063231 | MS.gene87476:CDS | 40.0% | |
| CCAAAGTGGCTAATTAGCAA+AGG | - | chr8.3:27063361-27063380 | None:intergenic | 40.0% | |
| CCTTTGCTAATTAGCCACTT+TGG | + | chr8.3:27063358-27063377 | MS.gene87476:CDS | 40.0% | |
| CGGTGAAACAGAAACTGAAA+TGG | + | chr8.3:27061988-27062007 | MS.gene87476:CDS | 40.0% | |
| GAATGAGTTGCTTAACATGG+TGG | + | chr8.3:27062381-27062400 | MS.gene87476:intron | 40.0% | |
| GACGAATGAGTTGCTTAACA+TGG | + | chr8.3:27062378-27062397 | MS.gene87476:intron | 40.0% | |
| TAGCTTAGGAATTGCAGACT+TGG | + | chr8.3:27061787-27061806 | MS.gene87476:CDS | 40.0% | |
| TGCAAACAACTCCTTAGTTC+AGG | + | chr8.3:27061438-27061457 | MS.gene87476:CDS | 40.0% | |
| TTCTGGACCAAACACTTTGT+TGG | + | chr8.3:27061817-27061836 | MS.gene87476:CDS | 40.0% | |
| ! | ATTCCTCTTACAGCCTTATG+TGG | + | chr8.3:27062086-27062105 | MS.gene87476:CDS | 40.0% |
| ! | GATACCACCAACAAAGTGTT+TGG | - | chr8.3:27061827-27061846 | None:intergenic | 40.0% |
| ! | GGTTTTCTTGAACGATTTGC+CGG | + | chr8.3:27061910-27061929 | MS.gene87476:CDS | 40.0% |
| ! | GTTTTCTTGAACGATTTGCC+GGG | + | chr8.3:27061911-27061930 | MS.gene87476:CDS | 40.0% |
| ! | TAGTTTTCTCCTTGGACATC+CGG | - | chr8.3:27063435-27063454 | None:intergenic | 40.0% |
| ! | TCACAAGTACTGCACATGAA+TGG | + | chr8.3:27061394-27061413 | MS.gene87476:CDS | 40.0% |
| ! | TGCTATATATCTGGAGTTCC+TGG | + | chr8.3:27062016-27062035 | MS.gene87476:CDS | 40.0% |
| !! | CAAGGAGTGTTGCTACATTT+GGG | + | chr8.3:27062629-27062648 | MS.gene87476:CDS | 40.0% |
| ATCCTGCCATAGAAAGAACC+AGG | - | chr8.3:27062037-27062056 | None:intergenic | 45.0% | |
| ATGGACACGGAGTGTATTGA+GGG | - | chr8.3:27063159-27063178 | None:intergenic | 45.0% | |
| GTGCAGAGGAAGTAGTTGAA+GGG | + | chr8.3:27062556-27062575 | MS.gene87476:CDS | 45.0% | |
| GTGTCCATCGGAAGTGAAAT+TGG | + | chr8.3:27063171-27063190 | MS.gene87476:CDS | 45.0% | |
| TAGCCACATAAGGCTGTAAG+AGG | - | chr8.3:27062092-27062111 | None:intergenic | 45.0% | |
| TCAATACACTCCGTGTCCAT+CGG | + | chr8.3:27063159-27063178 | MS.gene87476:CDS | 45.0% | |
| TCGTGAATCTCCCGAATACA+AGG | + | chr8.3:27061889-27061908 | MS.gene87476:CDS | 45.0% | |
| TGCAGAGGAAGTAGTTGAAG+GGG | + | chr8.3:27062557-27062576 | MS.gene87476:CDS | 45.0% | |
| TGGACCAAACACTTTGTTGG+TGG | + | chr8.3:27061820-27061839 | MS.gene87476:CDS | 45.0% | |
| ! | CAAGTACTGCACATGAATGG+AGG | + | chr8.3:27061397-27061416 | MS.gene87476:CDS | 45.0% |
| ! | CAGCCTTATGTGGCTATCTA+AGG | + | chr8.3:27062096-27062115 | MS.gene87476:CDS | 45.0% |
| ! | GGAGTTCCTGGTTCTTTCTA+TGG | + | chr8.3:27062028-27062047 | MS.gene87476:CDS | 45.0% |
| ! | TTCCTGGTTCTTTCTATGGC+AGG | + | chr8.3:27062032-27062051 | MS.gene87476:CDS | 45.0% |
| !! | GCAAGGAGTGTTGCTACATT+TGG | + | chr8.3:27062628-27062647 | MS.gene87476:CDS | 45.0% |
| !! | TGGGGGTTTCTGAAGTGAAT+TGG | + | chr8.3:27063230-27063249 | MS.gene87476:CDS | 45.0% |
| !! | TTTTCTCAAGTGTCGTGCAG+AGG | + | chr8.3:27062542-27062561 | MS.gene87476:CDS | 45.0% |
| !! | AAAAAAACTTAATTATATTT+AGG | + | chr8.3:27062997-27063016 | MS.gene87476:intron | 5.0% |
| !! | AAAAAACTTAATTATATTTA+GGG | + | chr8.3:27062998-27063017 | MS.gene87476:intron | 5.0% |
| !!! | CATATAATATTTTTTTTTTA+AGG | + | chr8.3:27061638-27061657 | MS.gene87476:intron | 5.0% |
| AGAAACCCCCAATCGATCGA+TGG | - | chr8.3:27063221-27063240 | None:intergenic | 50.0% | |
| ATGTCTGAATCACTCGGCGA+TGG | + | chr8.3:27063295-27063314 | MS.gene87476:CDS | 50.0% | |
| CGTGCAGAGGAAGTAGTTGA+AGG | + | chr8.3:27062555-27062574 | MS.gene87476:CDS | 50.0% | |
| CTTAGTTGACCGGATGTCCA+AGG | + | chr8.3:27063423-27063442 | MS.gene87476:CDS | 50.0% | |
| GATGGACACGGAGTGTATTG+AGG | - | chr8.3:27063160-27063179 | None:intergenic | 50.0% | |
| GCAGAGGAAGTAGTTGAAGG+GGG | + | chr8.3:27062558-27062577 | MS.gene87476:CDS | 50.0% | |
| ! | CTGCACATGAATGGAGGTGT+TGG | + | chr8.3:27061403-27061422 | MS.gene87476:CDS | 50.0% |
| ! | GCAGACTTGGGTTGCTCTTC+TGG | + | chr8.3:27061800-27061819 | MS.gene87476:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27061385 | 27063495 | 27061385 | ID=MS.gene87476 |
| chr8.3 | mRNA | 27061385 | 27063495 | 27061385 | ID=MS.gene87476.t1;Parent=MS.gene87476 |
| chr8.3 | exon | 27061385 | 27061459 | 27061385 | ID=MS.gene87476.t1.exon1;Parent=MS.gene87476.t1 |
| chr8.3 | CDS | 27061385 | 27061459 | 27061385 | ID=cds.MS.gene87476.t1;Parent=MS.gene87476.t1 |
| chr8.3 | exon | 27061713 | 27062117 | 27061713 | ID=MS.gene87476.t1.exon2;Parent=MS.gene87476.t1 |
| chr8.3 | CDS | 27061713 | 27062117 | 27061713 | ID=cds.MS.gene87476.t1;Parent=MS.gene87476.t1 |
| chr8.3 | exon | 27062435 | 27062689 | 27062435 | ID=MS.gene87476.t1.exon3;Parent=MS.gene87476.t1 |
| chr8.3 | CDS | 27062435 | 27062689 | 27062435 | ID=cds.MS.gene87476.t1;Parent=MS.gene87476.t1 |
| chr8.3 | exon | 27063118 | 27063495 | 27063118 | ID=MS.gene87476.t1.exon4;Parent=MS.gene87476.t1 |
| chr8.3 | CDS | 27063118 | 27063495 | 27063118 | ID=cds.MS.gene87476.t1;Parent=MS.gene87476.t1 |
| Gene Sequence |
| Protein sequence |
