Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012028.t1 | XP_003629413.1 | 90.9 | 362 | 33 | 0 | 1 | 362 | 9 | 370 | 2.20E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012028.t1 | Q9SPV4 | 58.4 | 363 | 133 | 5 | 1 | 360 | 9 | 356 | 3.2e-118 | 426.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012028.t1 | G7LDX4 | 90.9 | 362 | 33 | 0 | 1 | 362 | 9 | 370 | 1.6e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012028 | MS.gene024314 | PPI |
| MS.gene64697 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene25135 | PPI |
| MS.gene99450 | MS.gene012028 | PPI |
| MS.gene033748 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene049577 | PPI |
| MS.gene012028 | MS.gene008450 | PPI |
| MS.gene037613 | MS.gene012028 | PPI |
| MS.gene68203 | MS.gene012028 | PPI |
| MS.gene024301 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene033735 | PPI |
| MS.gene024315 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene52303 | PPI |
| MS.gene02421 | MS.gene012028 | PPI |
| MS.gene010553 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene76430 | PPI |
| MS.gene59406 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene000556 | PPI |
| MS.gene012028 | MS.gene02421 | PPI |
| MS.gene014262 | MS.gene012028 | PPI |
| MS.gene87476 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene024299 | PPI |
| MS.gene73290 | MS.gene012028 | PPI |
| MS.gene063148 | MS.gene012028 | PPI |
| MS.gene52320 | MS.gene012028 | PPI |
| MS.gene033734 | MS.gene012028 | PPI |
| MS.gene07908 | MS.gene012028 | PPI |
| MS.gene68796 | MS.gene012028 | PPI |
| MS.gene012028 | MS.gene033750 | PPI |
| MS.gene012028 | MS.gene73369 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012028.t1 | MTR_8g077040 | 95.028 | 362 | 18 | 0 | 1 | 362 | 9 | 370 | 0.0 | 717 |
| MS.gene012028.t1 | MTR_5g020940 | 71.191 | 361 | 103 | 1 | 1 | 360 | 19 | 379 | 0.0 | 556 |
| MS.gene012028.t1 | MTR_3g467270 | 71.547 | 362 | 103 | 0 | 1 | 362 | 8 | 369 | 0.0 | 553 |
| MS.gene012028.t1 | MTR_4g018820 | 71.667 | 360 | 91 | 2 | 1 | 360 | 9 | 357 | 0.0 | 533 |
| MS.gene012028.t1 | MTR_8g076900 | 68.333 | 360 | 106 | 1 | 1 | 360 | 9 | 360 | 0.0 | 514 |
| MS.gene012028.t1 | MTR_6g056070 | 63.361 | 363 | 118 | 3 | 1 | 362 | 9 | 357 | 1.40e-163 | 462 |
| MS.gene012028.t1 | MTR_8g020690 | 60.665 | 361 | 130 | 2 | 1 | 360 | 9 | 358 | 1.14e-157 | 447 |
| MS.gene012028.t1 | MTR_8g020700 | 59.557 | 361 | 131 | 2 | 1 | 360 | 9 | 355 | 5.18e-156 | 442 |
| MS.gene012028.t1 | MTR_8g076900 | 72.996 | 237 | 64 | 0 | 1 | 237 | 9 | 245 | 1.25e-125 | 362 |
| MS.gene012028.t1 | MTR_8g020700 | 64.372 | 247 | 87 | 1 | 1 | 246 | 9 | 255 | 2.09e-113 | 330 |
| MS.gene012028.t1 | MTR_3g117060 | 43.514 | 370 | 188 | 4 | 1 | 360 | 9 | 367 | 9.38e-109 | 323 |
| MS.gene012028.t1 | MTR_1g022465 | 44.415 | 376 | 185 | 7 | 1 | 360 | 9 | 376 | 4.84e-103 | 308 |
| MS.gene012028.t1 | MTR_3g467560 | 44.262 | 366 | 187 | 5 | 1 | 360 | 33 | 387 | 6.28e-103 | 308 |
| MS.gene012028.t1 | MTR_1g022455 | 44.415 | 376 | 186 | 6 | 1 | 360 | 9 | 377 | 2.33e-102 | 307 |
| MS.gene012028.t1 | MTR_5g046110 | 39.617 | 366 | 201 | 3 | 1 | 360 | 69 | 420 | 7.61e-96 | 291 |
| MS.gene012028.t1 | MTR_7g084620 | 41.398 | 372 | 193 | 8 | 1 | 362 | 9 | 365 | 6.68e-95 | 287 |
| MS.gene012028.t1 | MTR_8g077030 | 47.443 | 352 | 92 | 8 | 1 | 350 | 9 | 269 | 7.77e-93 | 287 |
| MS.gene012028.t1 | MTR_7g084350 | 37.297 | 370 | 213 | 5 | 1 | 362 | 7 | 365 | 1.13e-83 | 258 |
| MS.gene012028.t1 | MTR_7g084330 | 35.311 | 354 | 193 | 8 | 17 | 362 | 8 | 333 | 2.71e-65 | 210 |
| MS.gene012028.t1 | MTR_3g054330 | 36.134 | 357 | 192 | 12 | 1 | 338 | 18 | 357 | 9.79e-53 | 179 |
| MS.gene012028.t1 | MTR_1g108660 | 33.333 | 357 | 190 | 12 | 21 | 360 | 12 | 337 | 3.40e-52 | 176 |
| MS.gene012028.t1 | MTR_5g093900 | 33.420 | 383 | 217 | 11 | 1 | 359 | 21 | 389 | 8.40e-51 | 174 |
| MS.gene012028.t1 | MTR_3g052700 | 33.702 | 362 | 208 | 9 | 1 | 343 | 21 | 369 | 2.60e-49 | 170 |
| MS.gene012028.t1 | MTR_6g015620 | 32.000 | 125 | 74 | 2 | 240 | 360 | 19 | 136 | 1.00e-15 | 73.6 |
| MS.gene012028.t1 | MTR_7g084340 | 30.597 | 134 | 85 | 2 | 229 | 360 | 2 | 129 | 9.59e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012028.t1 | AT3G11480 | 42.077 | 366 | 188 | 6 | 1 | 360 | 31 | 378 | 1.03e-97 | 295 |
| MS.gene012028.t1 | AT5G66430 | 41.160 | 362 | 202 | 5 | 1 | 360 | 1 | 353 | 2.76e-96 | 290 |
| MS.gene012028.t1 | AT1G19640 | 44.357 | 381 | 189 | 7 | 1 | 360 | 9 | 387 | 7.64e-96 | 290 |
| MS.gene012028.t1 | AT4G36470 | 41.867 | 375 | 188 | 7 | 1 | 361 | 12 | 370 | 7.57e-95 | 287 |
| MS.gene012028.t1 | AT5G04370 | 42.818 | 362 | 192 | 5 | 1 | 360 | 41 | 389 | 3.24e-94 | 286 |
| MS.gene012028.t1 | AT5G04370 | 42.818 | 362 | 192 | 5 | 1 | 360 | 60 | 408 | 8.67e-94 | 286 |
| MS.gene012028.t1 | AT5G04370 | 42.818 | 362 | 192 | 5 | 1 | 360 | 46 | 394 | 1.31e-93 | 285 |
| MS.gene012028.t1 | AT5G38020 | 41.848 | 368 | 200 | 6 | 1 | 360 | 6 | 367 | 3.36e-90 | 275 |
| MS.gene012028.t1 | AT3G21950 | 41.005 | 378 | 189 | 7 | 1 | 360 | 6 | 367 | 3.79e-89 | 273 |
| MS.gene012028.t1 | AT5G04380 | 40.000 | 365 | 200 | 6 | 1 | 360 | 38 | 388 | 1.08e-88 | 272 |
| MS.gene012028.t1 | AT5G04380 | 39.452 | 365 | 195 | 7 | 1 | 360 | 34 | 377 | 1.16e-84 | 261 |
| MS.gene012028.t1 | AT3G21950 | 38.366 | 404 | 195 | 9 | 1 | 360 | 6 | 399 | 3.03e-83 | 259 |
| MS.gene012028.t1 | AT2G14060 | 37.297 | 370 | 210 | 5 | 1 | 360 | 14 | 371 | 7.23e-83 | 257 |
| MS.gene012028.t1 | AT5G04380 | 40.062 | 322 | 181 | 4 | 40 | 360 | 7 | 317 | 2.13e-82 | 254 |
| MS.gene012028.t1 | AT5G38020 | 42.073 | 328 | 177 | 5 | 40 | 360 | 7 | 328 | 3.88e-82 | 253 |
| MS.gene012028.t1 | AT2G14060 | 43.556 | 225 | 123 | 2 | 1 | 224 | 14 | 235 | 3.75e-64 | 204 |
| MS.gene012028.t1 | AT1G68040 | 34.890 | 364 | 198 | 8 | 1 | 351 | 13 | 350 | 5.36e-64 | 208 |
| MS.gene012028.t1 | AT5G55250 | 34.349 | 361 | 192 | 12 | 1 | 337 | 21 | 360 | 8.28e-55 | 184 |
| MS.gene012028.t1 | AT1G15125 | 31.467 | 375 | 214 | 11 | 1 | 360 | 1 | 347 | 2.89e-50 | 172 |
| MS.gene012028.t1 | AT5G37990 | 34.204 | 383 | 198 | 14 | 1 | 360 | 10 | 361 | 1.32e-49 | 170 |
| MS.gene012028.t1 | AT5G55250 | 33.436 | 326 | 176 | 9 | 33 | 337 | 17 | 322 | 4.48e-49 | 169 |
| MS.gene012028.t1 | AT5G38100 | 33.708 | 356 | 191 | 9 | 1 | 340 | 10 | 336 | 1.00e-48 | 168 |
| MS.gene012028.t1 | AT5G38780 | 32.687 | 361 | 196 | 10 | 1 | 343 | 10 | 341 | 1.94e-48 | 167 |
| MS.gene012028.t1 | AT5G37970 | 32.021 | 381 | 209 | 10 | 1 | 360 | 10 | 361 | 1.41e-47 | 165 |
| MS.gene012028.t1 | AT5G38100 | 35.370 | 311 | 159 | 8 | 43 | 340 | 32 | 313 | 9.64e-47 | 162 |
| MS.gene012028.t1 | AT5G38780 | 34.185 | 313 | 163 | 9 | 42 | 340 | 6 | 289 | 1.39e-46 | 161 |
| MS.gene012028.t1 | AT4G26420 | 34.454 | 357 | 194 | 13 | 1 | 336 | 13 | 350 | 7.33e-46 | 161 |
| MS.gene012028.t1 | AT5G56300 | 30.986 | 355 | 210 | 10 | 1 | 337 | 24 | 361 | 1.63e-45 | 160 |
| MS.gene012028.t1 | AT3G44840 | 32.676 | 355 | 192 | 10 | 1 | 340 | 7 | 329 | 2.22e-44 | 156 |
| MS.gene012028.t1 | AT3G44860 | 36.786 | 280 | 158 | 6 | 1 | 273 | 7 | 274 | 1.06e-40 | 146 |
| MS.gene012028.t1 | AT3G44870 | 36.429 | 280 | 156 | 7 | 1 | 273 | 7 | 271 | 5.37e-40 | 145 |
| MS.gene012028.t1 | AT1G66720 | 33.000 | 300 | 172 | 10 | 1 | 286 | 9 | 293 | 5.21e-39 | 142 |
| MS.gene012028.t1 | AT1G66700 | 32.082 | 293 | 157 | 7 | 1 | 273 | 9 | 279 | 1.30e-37 | 138 |
| MS.gene012028.t1 | AT4G26420 | 38.222 | 225 | 115 | 8 | 1 | 212 | 13 | 226 | 6.65e-37 | 134 |
| MS.gene012028.t1 | AT4G26420 | 38.739 | 222 | 118 | 7 | 1 | 212 | 1 | 214 | 1.47e-36 | 133 |
| MS.gene012028.t1 | AT5G38100 | 38.532 | 218 | 110 | 6 | 1 | 205 | 10 | 216 | 7.85e-35 | 128 |
| MS.gene012028.t1 | AT5G38100 | 38.532 | 218 | 110 | 6 | 1 | 205 | 10 | 216 | 8.97e-35 | 128 |
| MS.gene012028.t1 | AT1G15125 | 35.160 | 219 | 119 | 6 | 1 | 209 | 1 | 206 | 1.53e-33 | 125 |
| MS.gene012028.t1 | AT1G66690 | 32.302 | 291 | 159 | 7 | 1 | 273 | 9 | 279 | 2.26e-32 | 124 |
| MS.gene012028.t1 | AT1G66700 | 31.907 | 257 | 133 | 7 | 1 | 237 | 9 | 243 | 5.58e-30 | 115 |
Find 72 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTC+TGG | 0.124180 | 8.2:+28560622 | MS.gene012028:CDS |
| TCTGCAATTCCTAAGCTATT+TGG | 0.193298 | 8.2:-28560604 | None:intergenic |
| CAGCCTTATGTGGCTATCTA+AGG | 0.259712 | 8.2:+28560918 | MS.gene012028:CDS |
| GGAGTTCCTGGTTCTTTCTA+TGG | 0.263034 | 8.2:+28560850 | MS.gene012028:CDS |
| GTTCAAGAAAACCTTGTATT+CGG | 0.272656 | 8.2:-28560722 | None:intergenic |
| GCAAGGAGTGTTGCTACATT+TGG | 0.284975 | 8.2:+28561517 | MS.gene012028:CDS |
| TTGCTACATTTGGGAACTTA+TGG | 0.286140 | 8.2:+28561527 | MS.gene012028:CDS |
| GATTATGGCTTCTTCTCTAA+TGG | 0.308035 | 8.2:-28560560 | None:intergenic |
| CTGCAATTCCTAAGCTATTT+GGG | 0.311964 | 8.2:-28560603 | None:intergenic |
| TGCTATATATCTGGAGTTCC+TGG | 0.312996 | 8.2:+28560838 | MS.gene012028:CDS |
| ATTACAGTAGAGACTGATTA+TGG | 0.317438 | 8.2:-28560575 | None:intergenic |
| TCTTAATGATATGGTCTTGC+AGG | 0.323770 | 8.2:+28561557 | MS.gene012028:CDS |
| GGAGAATGTGAACAACAATA+AGG | 0.339279 | 8.2:+28561329 | MS.gene012028:CDS |
| GGCTATAGCTCTTAATGATA+TGG | 0.347430 | 8.2:+28561548 | MS.gene012028:CDS |
| TTCTGGACCAAACACTTTGT+TGG | 0.351191 | 8.2:+28560639 | MS.gene012028:CDS |
| ACAAAATGCAAACTTTGATT+AGG | 0.356644 | 8.2:-28560883 | None:intergenic |
| ATGGATCAGTGCTATATATC+TGG | 0.358943 | 8.2:+28560829 | MS.gene012028:CDS |
| GTGTCCATCGGAAGTGAAAT+TGG | 0.373571 | 8.2:+28562059 | MS.gene012028:CDS |
| CAAGGAGTGTTGCTACATTT+GGG | 0.384196 | 8.2:+28561518 | MS.gene012028:CDS |
| TTCAAGAAAACCTTGTATTC+GGG | 0.384731 | 8.2:-28560721 | None:intergenic |
| ATCATTTACCATCGATCGAT+TGG | 0.399987 | 8.2:+28562098 | MS.gene012028:CDS |
| TGCAAACAACTCCTTAGTTC+AGG | 0.408183 | 8.2:+28560254 | MS.gene012028:CDS |
| TTCCTGGTTCTTTCTATGGC+AGG | 0.412204 | 8.2:+28560854 | MS.gene012028:CDS |
| TCATTTACCATCGATCGATT+GGG | 0.423277 | 8.2:+28562099 | MS.gene012028:CDS |
| TTATTGTTGTTCACATTCTC+CGG | 0.423470 | 8.2:-28561327 | None:intergenic |
| ATCAGAATTTATCAAGGTTG+TGG | 0.432422 | 8.2:+28560666 | MS.gene012028:CDS |
| AGGATTTCTAGTCAATAATA+CGG | 0.440066 | 8.2:-28562358 | None:intergenic |
| GATACCACCAACAAAGTGTT+TGG | 0.447192 | 8.2:-28560646 | None:intergenic |
| CGGTGAAACAGAAACTGAAA+TGG | 0.453352 | 8.2:+28560810 | MS.gene012028:CDS |
| CCTTTGCTAATTAGCCACTT+TGG | 0.456393 | 8.2:+28562246 | MS.gene012028:CDS |
| TATGCATTAAGTACATTTGA+GGG | 0.463714 | 8.2:-28561378 | None:intergenic |
| GAGAATGTGAACAACAATAA+GGG | 0.486332 | 8.2:+28561330 | MS.gene012028:CDS |
| ATTGGAATGCTCTCGATCAA+TGG | 0.490851 | 8.2:+28562136 | MS.gene012028:CDS |
| TAGCTTAGGAATTGCAGACT+TGG | 0.496344 | 8.2:+28560609 | MS.gene012028:CDS |
| GTATGCATTAAGTACATTTG+AGG | 0.501880 | 8.2:-28561379 | None:intergenic |
| TGGACCAAACACTTTGTTGG+TGG | 0.504941 | 8.2:+28560642 | MS.gene012028:CDS |
| AGCTTAGGAATTGCAGACTT+GGG | 0.505553 | 8.2:+28560610 | MS.gene012028:CDS |
| GGTGGTATCAGAATTTATCA+AGG | 0.507106 | 8.2:+28560660 | MS.gene012028:CDS |
| TAGCCACATAAGGCTGTAAG+AGG | 0.511113 | 8.2:-28560911 | None:intergenic |
| AATACATACCCAAATAGCTT+AGG | 0.511941 | 8.2:+28560595 | MS.gene012028:CDS |
| TCGTGAATCTCCCGAATACA+AGG | 0.518497 | 8.2:+28560711 | MS.gene012028:CDS |
| ATTCCTCTTACAGCCTTATG+TGG | 0.518669 | 8.2:+28560908 | MS.gene012028:CDS |
| ATCAAGAAATCTTAGTTGAT+CGG | 0.522974 | 8.2:+28562301 | MS.gene012028:CDS |
| ATGGACACGGAGTGTATTGA+GGG | 0.523168 | 8.2:-28562044 | None:intergenic |
| CATTTACCATCGATCGATTG+GGG | 0.529876 | 8.2:+28562100 | MS.gene012028:CDS |
| CGTGCAGAGGAAGTAGTTGA+AGG | 0.533351 | 8.2:+28561444 | MS.gene012028:CDS |
| AAACCTTAGATAGCCACATA+AGG | 0.534886 | 8.2:-28560921 | None:intergenic |
| ACTTCCAATTTCACTTCCGA+TGG | 0.537214 | 8.2:-28562063 | None:intergenic |
| TCACAAGTACTGCACATGAA+TGG | 0.538311 | 8.2:+28560210 | None:intergenic |
| GATGGACACGGAGTGTATTG+AGG | 0.546758 | 8.2:-28562045 | None:intergenic |
| ATTCATGTATACCTGAACTA+AGG | 0.548252 | 8.2:-28560265 | None:intergenic |
| CAATAAGGGAAACATTTACA+TGG | 0.550411 | 8.2:+28561344 | MS.gene012028:CDS |
| AAATTGGAAGTTCTCAAAGA+AGG | 0.571795 | 8.2:+28562075 | MS.gene012028:CDS |
| ACATAAGGCTGTAAGAGGAA+TGG | 0.572052 | 8.2:-28560906 | None:intergenic |
| CTGCACATGAATGGAGGTGT+TGG | 0.572205 | 8.2:+28560219 | None:intergenic |
| ATGTTATTGAAGTCGTTACC+CGG | 0.575424 | 8.2:-28560751 | None:intergenic |
| GTGCAGAGGAAGTAGTTGAA+GGG | 0.581334 | 8.2:+28561445 | MS.gene012028:CDS |
| ATGTCTGAATCACTCGGCGA+TGG | 0.582272 | 8.2:+28562183 | MS.gene012028:CDS |
| AATTAGCAAAGGTTCAGAAA+CGG | 0.583320 | 8.2:-28562235 | None:intergenic |
| AATTTCACTTCCGATGGACA+CGG | 0.587997 | 8.2:-28562057 | None:intergenic |
| TCAATACACTCCGTGTCCAT+CGG | 0.588900 | 8.2:+28562047 | MS.gene012028:CDS |
| CCAAAGTGGCTAATTAGCAA+AGG | 0.591173 | 8.2:-28562246 | None:intergenic |
| CTTAGTTGATCGGATGTCCA+AGG | 0.603686 | 8.2:+28562311 | MS.gene012028:CDS |
| ATCCTGCCATAGAAAGAACC+AGG | 0.607110 | 8.2:-28560856 | None:intergenic |
| TGCAGAGGAAGTAGTTGAAG+GGG | 0.612981 | 8.2:+28561446 | MS.gene012028:CDS |
| CAATGATAGACTCTCCAAAG+TGG | 0.620746 | 8.2:-28562260 | None:intergenic |
| TCTCAAATGTCTGAATCACT+CGG | 0.620788 | 8.2:+28562177 | MS.gene012028:CDS |
| AAGTGACAAGATGTATAGCA+AGG | 0.623819 | 8.2:+28561500 | MS.gene012028:CDS |
| ATGCATTAAGTACATTTGAG+GGG | 0.624171 | 8.2:-28561377 | None:intergenic |
| ATTTACCATCGATCGATTGG+GGG | 0.660045 | 8.2:+28562101 | MS.gene012028:CDS |
| CAAGTACTGCACATGAATGG+AGG | 0.661451 | 8.2:+28560213 | None:intergenic |
| GCAGAGGAAGTAGTTGAAGG+GGG | 0.713278 | 8.2:+28561447 | MS.gene012028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTTTTTTTTAA+TGG | + | chr8.2:28560461-28560480 | MS.gene012028:intron | 0.0% |
| !! | ATTATATATGAACACATAAT+AGG | - | chr8.2:28560340-28560359 | None:intergenic | 15.0% |
| !! | GAAATTACATATTAATATCT+TGG | - | chr8.2:28561969-28561988 | None:intergenic | 15.0% |
| !! | TAAAATATTCACTATCTTTA+GGG | + | chr8.2:28561833-28561852 | MS.gene012028:intron | 15.0% |
| !! | TTAAAATATTCACTATCTTT+AGG | + | chr8.2:28561832-28561851 | MS.gene012028:intron | 15.0% |
| !! | AATGCTATATATAACAGAAT+CGG | - | chr8.2:28560368-28560387 | None:intergenic | 20.0% |
| !! | GTAAATGTATATGTTGTTAT+TGG | + | chr8.2:28561657-28561676 | MS.gene012028:intron | 20.0% |
| !! | TTAATTATATTTAGGGACAA+AGG | + | chr8.2:28561893-28561912 | MS.gene012028:intron | 20.0% |
| !!! | GTTTTTGTAATTGATGTAAT+TGG | + | chr8.2:28560500-28560519 | MS.gene012028:intron | 20.0% |
| !!! | TATGTAATTTCTTTTCTATG+TGG | + | chr8.2:28561978-28561997 | MS.gene012028:intron | 20.0% |
| ! | ACAAAATGCAAACTTTGATT+AGG | - | chr8.2:28560886-28560905 | None:intergenic | 25.0% |
| ! | ACCACTAACACATTATATTT+AGG | - | chr8.2:28561596-28561615 | None:intergenic | 25.0% |
| ! | ATAAGATGAAAAATCAACTG+AGG | - | chr8.2:28561149-28561168 | None:intergenic | 25.0% |
| ! | ATCAAGAAATCTTAGTTGAT+CGG | + | chr8.2:28562301-28562320 | MS.gene012028:CDS | 25.0% |
| ! | ATGCTATATATAACAGAATC+GGG | - | chr8.2:28560367-28560386 | None:intergenic | 25.0% |
| ! | TAAGATGAAAAATCAACTGA+GGG | - | chr8.2:28561148-28561167 | None:intergenic | 25.0% |
| ! | TATGCATTAAGTACATTTGA+GGG | - | chr8.2:28561381-28561400 | None:intergenic | 25.0% |
| ! | TCCTAAATATAATGTGTTAG+TGG | + | chr8.2:28561592-28561611 | MS.gene012028:intron | 25.0% |
| !! | ATTTCTTTTCTATGTGGATT+AGG | + | chr8.2:28561984-28562003 | MS.gene012028:intron | 25.0% |
| !! | TTTGATTATTTTCAGCTAGA+GGG | - | chr8.2:28560427-28560446 | None:intergenic | 25.0% |
| !!! | AGGATTTCTAGTCAATAATA+CGG | - | chr8.2:28562361-28562380 | None:intergenic | 25.0% |
| !!! | GAGAAAAATCTCTTTGAAAT+TGG | - | chr8.2:28561410-28561429 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTCTTAGTCAA+TGG | + | chr8.2:28560973-28560992 | MS.gene012028:intron | 25.0% |
| !!! | TTTCTTTTCTATGTGGATTA+GGG | + | chr8.2:28561985-28562004 | MS.gene012028:intron | 25.0% |
| AAATTGGAAGTTCTCAAAGA+AGG | + | chr8.2:28562075-28562094 | MS.gene012028:CDS | 30.0% | |
| AATACATACCCAAATAGCTT+AGG | + | chr8.2:28560595-28560614 | MS.gene012028:CDS | 30.0% | |
| AATCCTTAACATGTGTCATA+GGG | + | chr8.2:28561115-28561134 | MS.gene012028:intron | 30.0% | |
| AATTAGCAAAGGTTCAGAAA+CGG | - | chr8.2:28562238-28562257 | None:intergenic | 30.0% | |
| ATCAGAATTTATCAAGGTTG+TGG | + | chr8.2:28560666-28560685 | MS.gene012028:CDS | 30.0% | |
| ATGCATTAAGTACATTTGAG+GGG | - | chr8.2:28561380-28561399 | None:intergenic | 30.0% | |
| ATTACAGTAGAGACTGATTA+TGG | - | chr8.2:28560578-28560597 | None:intergenic | 30.0% | |
| ATTCATGTATACCTGAACTA+AGG | - | chr8.2:28560268-28560287 | None:intergenic | 30.0% | |
| CAATAAGGGAAACATTTACA+TGG | + | chr8.2:28561344-28561363 | MS.gene012028:CDS | 30.0% | |
| GAGAATGTGAACAACAATAA+GGG | + | chr8.2:28561330-28561349 | MS.gene012028:CDS | 30.0% | |
| GTATGCATTAAGTACATTTG+AGG | - | chr8.2:28561382-28561401 | None:intergenic | 30.0% | |
| GTTCAAGAAAACCTTGTATT+CGG | - | chr8.2:28560725-28560744 | None:intergenic | 30.0% | |
| TTCAAGAAAACCTTGTATTC+GGG | - | chr8.2:28560724-28560743 | None:intergenic | 30.0% | |
| ! | CGCATGATTCTAACATTTTT+AGG | + | chr8.2:28561471-28561490 | MS.gene012028:CDS | 30.0% |
| ! | CTTTGATTATTTTCAGCTAG+AGG | - | chr8.2:28560428-28560447 | None:intergenic | 30.0% |
| ! | TTATTGTTGTTCACATTCTC+CGG | - | chr8.2:28561330-28561349 | None:intergenic | 30.0% |
| !! | ATCTAGCTTCTCTTCTTTTA+TGG | - | chr8.2:28562013-28562032 | None:intergenic | 30.0% |
| !! | TTGTTGGTTGGTGATTATTT+AGG | + | chr8.2:28561302-28561321 | MS.gene012028:intron | 30.0% |
| AAACCTTAGATAGCCACATA+AGG | - | chr8.2:28560924-28560943 | None:intergenic | 35.0% | |
| AAGTGACAAGATGTATAGCA+AGG | + | chr8.2:28561500-28561519 | MS.gene012028:CDS | 35.0% | |
| ATCATTTACCATCGATCGAT+TGG | + | chr8.2:28562098-28562117 | MS.gene012028:CDS | 35.0% | |
| ATGGATCAGTGCTATATATC+TGG | + | chr8.2:28560829-28560848 | MS.gene012028:CDS | 35.0% | |
| ATGTTATTGAAGTCGTTACC+CGG | - | chr8.2:28560754-28560773 | None:intergenic | 35.0% | |
| CTGCAATTCCTAAGCTATTT+GGG | - | chr8.2:28560606-28560625 | None:intergenic | 35.0% | |
| GAATCCTTAACATGTGTCAT+AGG | + | chr8.2:28561114-28561133 | MS.gene012028:intron | 35.0% | |
| GATTATGGCTTCTTCTCTAA+TGG | - | chr8.2:28560563-28560582 | None:intergenic | 35.0% | |
| GGAGAATGTGAACAACAATA+AGG | + | chr8.2:28561329-28561348 | MS.gene012028:CDS | 35.0% | |
| GGCTATAGCTCTTAATGATA+TGG | + | chr8.2:28561548-28561567 | MS.gene012028:CDS | 35.0% | |
| GGTGGTATCAGAATTTATCA+AGG | + | chr8.2:28560660-28560679 | MS.gene012028:CDS | 35.0% | |
| TCATTTACCATCGATCGATT+GGG | + | chr8.2:28562099-28562118 | MS.gene012028:CDS | 35.0% | |
| TCTCAAATGTCTGAATCACT+CGG | + | chr8.2:28562177-28562196 | MS.gene012028:CDS | 35.0% | |
| TCTGCAATTCCTAAGCTATT+TGG | - | chr8.2:28560607-28560626 | None:intergenic | 35.0% | |
| TTGCTACATTTGGGAACTTA+TGG | + | chr8.2:28561527-28561546 | MS.gene012028:CDS | 35.0% | |
| ! | TCTTAATGATATGGTCTTGC+AGG | + | chr8.2:28561557-28561576 | MS.gene012028:CDS | 35.0% |
| ! | TGGAGAACATTTTTGTTGGT+TGG | + | chr8.2:28561290-28561309 | MS.gene012028:intron | 35.0% |
| !! | ATGGTGGAGAACATTTTTGT+TGG | + | chr8.2:28561286-28561305 | MS.gene012028:intron | 35.0% |
| !! | GACAAACTTAGTTTTCTCCT+TGG | - | chr8.2:28562331-28562350 | None:intergenic | 35.0% |
| !! | GTTGGTGATTATTTAGGTTC+CGG | + | chr8.2:28561308-28561327 | MS.gene012028:intron | 35.0% |
| AACTTCAAAAAGAGACTGCG+CGG | + | chr8.2:28560790-28560809 | MS.gene012028:CDS | 40.0% | |
| AATTTCACTTCCGATGGACA+CGG | - | chr8.2:28562060-28562079 | None:intergenic | 40.0% | |
| ACATAAGGCTGTAAGAGGAA+TGG | - | chr8.2:28560909-28560928 | None:intergenic | 40.0% | |
| ACTTCCAATTTCACTTCCGA+TGG | - | chr8.2:28562066-28562085 | None:intergenic | 40.0% | |
| AGCTTAGGAATTGCAGACTT+GGG | + | chr8.2:28560610-28560629 | MS.gene012028:CDS | 40.0% | |
| ATTGGAATGCTCTCGATCAA+TGG | + | chr8.2:28562136-28562155 | MS.gene012028:CDS | 40.0% | |
| ATTTACCATCGATCGATTGG+GGG | + | chr8.2:28562101-28562120 | MS.gene012028:CDS | 40.0% | |
| CAATGATAGACTCTCCAAAG+TGG | - | chr8.2:28562263-28562282 | None:intergenic | 40.0% | |
| CATTTACCATCGATCGATTG+GGG | + | chr8.2:28562100-28562119 | MS.gene012028:CDS | 40.0% | |
| CCAAAGTGGCTAATTAGCAA+AGG | - | chr8.2:28562249-28562268 | None:intergenic | 40.0% | |
| CCTTTGCTAATTAGCCACTT+TGG | + | chr8.2:28562246-28562265 | MS.gene012028:CDS | 40.0% | |
| CGGTGAAACAGAAACTGAAA+TGG | + | chr8.2:28560810-28560829 | MS.gene012028:CDS | 40.0% | |
| GAATGAGTTGCTTAACATGG+TGG | + | chr8.2:28561270-28561289 | MS.gene012028:intron | 40.0% | |
| GACGAATGAGTTGCTTAACA+TGG | + | chr8.2:28561267-28561286 | MS.gene012028:intron | 40.0% | |
| TAGCTTAGGAATTGCAGACT+TGG | + | chr8.2:28560609-28560628 | MS.gene012028:CDS | 40.0% | |
| TGCAAACAACTCCTTAGTTC+AGG | + | chr8.2:28560254-28560273 | MS.gene012028:CDS | 40.0% | |
| TTCTGGACCAAACACTTTGT+TGG | + | chr8.2:28560639-28560658 | MS.gene012028:CDS | 40.0% | |
| ! | ATTCCTCTTACAGCCTTATG+TGG | + | chr8.2:28560908-28560927 | MS.gene012028:CDS | 40.0% |
| ! | GATACCACCAACAAAGTGTT+TGG | - | chr8.2:28560649-28560668 | None:intergenic | 40.0% |
| ! | GGTTTTCTTGAACGATTTGC+CGG | + | chr8.2:28560732-28560751 | MS.gene012028:CDS | 40.0% |
| ! | GTTTTCTTGAACGATTTGCC+GGG | + | chr8.2:28560733-28560752 | MS.gene012028:CDS | 40.0% |
| ! | TGCTATATATCTGGAGTTCC+TGG | + | chr8.2:28560838-28560857 | MS.gene012028:CDS | 40.0% |
| !! | CAAGGAGTGTTGCTACATTT+GGG | + | chr8.2:28561518-28561537 | MS.gene012028:CDS | 40.0% |
| ATCCTGCCATAGAAAGAACC+AGG | - | chr8.2:28560859-28560878 | None:intergenic | 45.0% | |
| ATGGACACGGAGTGTATTGA+GGG | - | chr8.2:28562047-28562066 | None:intergenic | 45.0% | |
| CTTAGTTGATCGGATGTCCA+AGG | + | chr8.2:28562311-28562330 | MS.gene012028:CDS | 45.0% | |
| GTGCAGAGGAAGTAGTTGAA+GGG | + | chr8.2:28561445-28561464 | MS.gene012028:CDS | 45.0% | |
| GTGCCCTATGACACATGTTA+AGG | - | chr8.2:28561121-28561140 | None:intergenic | 45.0% | |
| GTGTCCATCGGAAGTGAAAT+TGG | + | chr8.2:28562059-28562078 | MS.gene012028:CDS | 45.0% | |
| TAGCCACATAAGGCTGTAAG+AGG | - | chr8.2:28560914-28560933 | None:intergenic | 45.0% | |
| TCAATACACTCCGTGTCCAT+CGG | + | chr8.2:28562047-28562066 | MS.gene012028:CDS | 45.0% | |
| TCGTGAATCTCCCGAATACA+AGG | + | chr8.2:28560711-28560730 | MS.gene012028:CDS | 45.0% | |
| TGCAGAGGAAGTAGTTGAAG+GGG | + | chr8.2:28561446-28561465 | MS.gene012028:CDS | 45.0% | |
| TGGACCAAACACTTTGTTGG+TGG | + | chr8.2:28560642-28560661 | MS.gene012028:CDS | 45.0% | |
| ! | CAGCCTTATGTGGCTATCTA+AGG | + | chr8.2:28560918-28560937 | MS.gene012028:CDS | 45.0% |
| ! | GGAGTTCCTGGTTCTTTCTA+TGG | + | chr8.2:28560850-28560869 | MS.gene012028:CDS | 45.0% |
| ! | TTCCTGGTTCTTTCTATGGC+AGG | + | chr8.2:28560854-28560873 | MS.gene012028:CDS | 45.0% |
| !! | GCAAGGAGTGTTGCTACATT+TGG | + | chr8.2:28561517-28561536 | MS.gene012028:CDS | 45.0% |
| !! | TGGGGGTTTCTGAAGTGAAT+TGG | + | chr8.2:28562118-28562137 | MS.gene012028:CDS | 45.0% |
| !! | TTTTCTCAAGTGTCGTGCAG+AGG | + | chr8.2:28561431-28561450 | MS.gene012028:CDS | 45.0% |
| !! | AAAAAAACTTAATTATATTT+AGG | + | chr8.2:28561885-28561904 | MS.gene012028:intron | 5.0% |
| !! | AAAAAACTTAATTATATTTA+GGG | + | chr8.2:28561886-28561905 | MS.gene012028:intron | 5.0% |
| AGAAACCCCCAATCGATCGA+TGG | - | chr8.2:28562109-28562128 | None:intergenic | 50.0% | |
| ATGTCTGAATCACTCGGCGA+TGG | + | chr8.2:28562183-28562202 | MS.gene012028:CDS | 50.0% | |
| CGTGCAGAGGAAGTAGTTGA+AGG | + | chr8.2:28561444-28561463 | MS.gene012028:CDS | 50.0% | |
| GATGGACACGGAGTGTATTG+AGG | - | chr8.2:28562048-28562067 | None:intergenic | 50.0% | |
| GCAGAGGAAGTAGTTGAAGG+GGG | + | chr8.2:28561447-28561466 | MS.gene012028:CDS | 50.0% | |
| ! | GCAGACTTGGGTTGCTCTTC+TGG | + | chr8.2:28560622-28560641 | MS.gene012028:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 28560225 | 28562383 | 28560225 | ID=MS.gene012028 |
| chr8.2 | mRNA | 28560225 | 28562383 | 28560225 | ID=MS.gene012028.t1;Parent=MS.gene012028 |
| chr8.2 | exon | 28560225 | 28560275 | 28560225 | ID=MS.gene012028.t1.exon1;Parent=MS.gene012028.t1 |
| chr8.2 | CDS | 28560225 | 28560275 | 28560225 | ID=cds.MS.gene012028.t1;Parent=MS.gene012028.t1 |
| chr8.2 | exon | 28560535 | 28560939 | 28560535 | ID=MS.gene012028.t1.exon2;Parent=MS.gene012028.t1 |
| chr8.2 | CDS | 28560535 | 28560939 | 28560535 | ID=cds.MS.gene012028.t1;Parent=MS.gene012028.t1 |
| chr8.2 | exon | 28561324 | 28561578 | 28561324 | ID=MS.gene012028.t1.exon3;Parent=MS.gene012028.t1 |
| chr8.2 | CDS | 28561324 | 28561578 | 28561324 | ID=cds.MS.gene012028.t1;Parent=MS.gene012028.t1 |
| chr8.2 | exon | 28562006 | 28562383 | 28562006 | ID=MS.gene012028.t1.exon4;Parent=MS.gene012028.t1 |
| chr8.2 | CDS | 28562006 | 28562383 | 28562006 | ID=cds.MS.gene012028.t1;Parent=MS.gene012028.t1 |
| Gene Sequence |
| Protein sequence |
