AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73369

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73369.t1 MTR_7g084350 92.899 338 24 0 1 338 28 365 0.0 656
MS.gene73369.t1 MTR_3g467560 71.217 337 93 2 1 336 54 387 3.66e-178 499
MS.gene73369.t1 MTR_7g084620 70.968 341 91 5 1 338 30 365 4.05e-176 493
MS.gene73369.t1 MTR_7g084330 67.155 341 89 6 1 338 13 333 2.54e-158 446
MS.gene73369.t1 MTR_3g117060 51.320 341 158 5 1 336 30 367 7.29e-116 340
MS.gene73369.t1 MTR_6g056070 40.625 320 170 4 24 338 53 357 3.46e-80 248
MS.gene73369.t1 MTR_8g076900 38.938 339 192 5 3 336 32 360 2.05e-79 246
MS.gene73369.t1 MTR_5g020940 38.953 344 194 6 3 336 42 379 9.15e-79 246
MS.gene73369.t1 MTR_4g018820 37.758 339 193 5 3 336 32 357 8.97e-78 242
MS.gene73369.t1 MTR_1g022465 42.331 326 167 6 26 336 57 376 6.42e-77 241
MS.gene73369.t1 MTR_8g077040 36.812 345 203 5 3 338 32 370 2.28e-76 239
MS.gene73369.t1 MTR_1g022455 41.358 324 174 5 26 336 57 377 1.93e-75 237
MS.gene73369.t1 MTR_3g467270 35.345 348 204 5 3 338 31 369 6.84e-75 235
MS.gene73369.t1 MTR_8g020700 39.688 320 171 4 3 316 32 335 2.19e-72 228
MS.gene73369.t1 MTR_5g046110 37.427 342 195 5 2 336 91 420 1.64e-67 218
MS.gene73369.t1 MTR_8g020690 35.294 340 201 4 3 336 32 358 5.57e-66 212
MS.gene73369.t1 MTR_7g084340 80.833 120 23 0 218 337 11 130 1.85e-64 200
MS.gene73369.t1 MTR_8g076900 42.727 220 115 3 3 217 32 245 1.20e-53 177
MS.gene73369.t1 MTR_3g052700 36.000 300 175 6 26 314 71 364 4.28e-53 179
MS.gene73369.t1 MTR_8g020700 42.534 221 115 3 3 217 32 246 4.53e-52 173
MS.gene73369.t1 MTR_5g093900 34.056 323 194 7 26 335 73 389 1.14e-51 176
MS.gene73369.t1 MTR_3g054330 36.093 302 173 7 26 314 63 357 1.94e-50 172
MS.gene73369.t1 MTR_1g108660 31.646 316 178 7 26 331 42 329 8.56e-50 169
MS.gene73369.t1 MTR_8g077030 29.582 311 129 9 6 314 34 256 8.55e-29 116
MS.gene73369.t1 MTR_6g015620 44.094 127 66 2 213 336 12 136 1.38e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73369.t1 AT1G19640 38.483 356 197 5 4 337 33 388 1.62e-73 232
MS.gene73369.t1 AT5G66430 40.615 325 173 7 2 318 23 335 1.27e-72 229
MS.gene73369.t1 AT3G11480 37.941 340 190 4 3 336 54 378 8.88e-70 223
MS.gene73369.t1 AT5G38020 39.275 331 175 7 3 318 29 348 1.07e-68 219
MS.gene73369.t1 AT5G38020 39.688 320 167 7 14 318 1 309 1.28e-67 215
MS.gene73369.t1 AT5G04370 39.296 341 187 8 2 336 63 389 3.96e-65 211
MS.gene73369.t1 AT5G04370 39.296 341 187 8 2 336 82 408 4.59e-65 211
MS.gene73369.t1 AT5G04370 39.296 341 187 8 2 336 68 394 5.83e-65 211
MS.gene73369.t1 AT3G21950 39.490 314 164 6 14 312 40 342 2.21e-64 208
MS.gene73369.t1 AT4G36470 36.957 322 176 8 9 316 41 349 1.68e-62 203
MS.gene73369.t1 AT5G04380 36.111 324 189 4 6 323 64 375 1.49e-61 201
MS.gene73369.t1 AT5G04380 36.392 316 183 4 14 323 1 304 2.04e-61 199
MS.gene73369.t1 AT3G21950 35.838 346 164 7 14 312 40 374 1.15e-57 192
MS.gene73369.t1 AT5G04380 35.185 324 185 5 6 323 60 364 2.19e-56 188
MS.gene73369.t1 AT2G14060 34.146 328 200 6 2 322 36 354 3.91e-55 184
MS.gene73369.t1 AT1G15125 32.258 341 193 11 10 337 33 348 3.30e-49 168
MS.gene73369.t1 AT5G55250 32.602 319 195 7 6 311 9 320 4.03e-48 165
MS.gene73369.t1 AT5G55250 32.602 319 195 7 6 311 47 358 1.32e-47 165
MS.gene73369.t1 AT1G68040 30.655 336 194 11 10 333 49 357 7.06e-43 152
MS.gene73369.t1 AT5G37970 31.046 306 177 6 25 319 60 342 1.41e-42 151
MS.gene73369.t1 AT5G37990 30.392 306 179 6 25 319 60 342 1.74e-42 151
MS.gene73369.t1 AT5G38100 31.307 329 186 10 2 317 13 314 2.93e-41 147
MS.gene73369.t1 AT5G38780 30.659 349 198 10 2 332 36 358 4.34e-41 147
MS.gene73369.t1 AT5G38780 31.307 329 183 9 22 332 6 309 6.27e-41 145
MS.gene73369.t1 AT5G38100 31.307 329 186 10 2 317 36 337 7.71e-41 146
MS.gene73369.t1 AT2G14060 39.487 195 110 2 2 196 36 222 6.63e-40 141
MS.gene73369.t1 AT4G26420 28.528 326 208 7 21 331 54 369 2.87e-35 132
MS.gene73369.t1 AT5G56300 28.267 329 202 10 25 333 68 382 7.70e-35 131
MS.gene73369.t1 AT1G66720 27.987 318 189 7 2 309 35 322 1.80e-33 127
MS.gene73369.t1 AT3G44870 29.592 294 166 8 26 309 53 315 4.29e-33 126
MS.gene73369.t1 AT1G66690 29.801 302 161 8 26 309 55 323 1.81e-31 121
MS.gene73369.t1 AT1G15125 33.937 221 122 8 10 220 33 239 9.90e-31 117
MS.gene73369.t1 AT1G66700 27.797 295 176 6 26 309 55 323 1.30e-30 119
MS.gene73369.t1 AT3G44860 32.365 241 137 6 26 256 53 277 1.84e-30 119
MS.gene73369.t1 AT3G44840 28.179 291 177 7 26 309 53 318 4.16e-30 117
MS.gene73369.t1 AT5G38100 30.396 227 140 7 2 224 36 248 1.94e-22 94.7
MS.gene73369.t1 AT5G38100 30.396 227 140 7 2 224 36 248 2.25e-22 94.7
MS.gene73369.t1 AT4G26420 30.857 175 109 4 25 195 58 224 7.96e-22 93.6
MS.gene73369.t1 AT4G26420 30.857 175 109 4 25 195 46 212 8.78e-22 93.6
MS.gene73369.t1 AT1G66700 32.941 170 95 4 26 190 55 210 1.98e-20 89.7

Find 55 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCTTGGTTGAATATTT+TGG 0.117266 7.2:+23166004 None:intergenic
GATGAGTGGTTCTGCTTTCT+TGG 0.159579 7.2:+23165991 None:intergenic
ATAGATCATTGAGGTAAATT+TGG 0.201496 7.2:+23166977 None:intergenic
TTTAGTTGAAGAAGCAAAAT+TGG 0.215168 7.2:-23164745 MS.gene73369:CDS
CTCTTTCTTGTTGAATGCTT+TGG 0.242144 7.2:+23166908 None:intergenic
GTGATGGTACTAACTTTAAT+TGG 0.251253 7.2:-23165845 MS.gene73369:CDS
TTCAGGACCAAATGCACTTA+TGG 0.271528 7.2:-23167067 MS.gene73369:CDS
TGTTGGAAAGTAGTTGATTT+AGG 0.276313 7.2:-23167096 MS.gene73369:CDS
GTTGATTTAGGTTGTTCTTC+AGG 0.296247 7.2:-23167084 MS.gene73369:CDS
GATCAACAATATCTTCTTGC+AGG 0.314712 7.2:+23164604 None:intergenic
GCAACACCAGGGAGCTTCTA+TGG 0.337472 7.2:-23166856 MS.gene73369:CDS
TCTATATCATCCTACTATAA+AGG 0.359099 7.2:-23164706 MS.gene73369:CDS
GAGACAACCATAAGTGCATT+TGG 0.372630 7.2:+23167060 None:intergenic
GAGGTTTATGTTGAGCAATT+TGG 0.385082 7.2:-23165923 MS.gene73369:CDS
TGTTTCACTTCCTTTATAGT+AGG 0.392703 7.2:+23164696 None:intergenic
GAATTTGAAAATGATGATAT+CGG 0.417336 7.2:-23167136 MS.gene73369:CDS
TTTCTTGTTGAATGCTTTGG+TGG 0.417731 7.2:+23166911 None:intergenic
ATTCTTCCTATTGTGTCCAT+TGG 0.424057 7.2:-23166798 MS.gene73369:CDS
TGATGGTACTAACTTTAATT+GGG 0.439302 7.2:-23165844 MS.gene73369:CDS
CGACCTTCTTTAAGGACACT+TGG 0.439820 7.2:+23164395 None:intergenic
AAACAAGTGATCGAGGTAGA+AGG 0.446801 7.2:-23164678 MS.gene73369:CDS
TGATAGCCAATGGACACAAT+AGG 0.448336 7.2:+23166792 None:intergenic
TTAATTGGGAGAGAAAATAA+TGG 0.449128 7.2:-23165830 MS.gene73369:CDS
TTGAGGTAAATTTGGAATGC+TGG 0.456080 7.2:+23166985 None:intergenic
TGAATGCTTTGGTGGAAATC+AGG 0.457567 7.2:+23166919 None:intergenic
GCATGTATGAAGCATGTTCC+AGG 0.460803 7.2:+23166877 None:intergenic
AAAACAAGCTCTGTGATACT+TGG 0.480684 7.2:+23164545 None:intergenic
GAAAGCAGAACCACTCATCA+AGG 0.487187 7.2:-23165987 MS.gene73369:CDS
GAGCCCTCCATCGGTGTATG+AGG 0.490938 7.2:-23165942 MS.gene73369:CDS
TTTATAGTAGGATGATATAG+AGG 0.491881 7.2:+23164708 None:intergenic
CAAGAAAGAGGAGAGAATCC+TGG 0.507141 7.2:-23166895 MS.gene73369:CDS
ATTAGCTTAAGCTTAAACCA+TGG 0.513101 7.2:-23167012 MS.gene73369:CDS
TCATGGATGAATTATTCTCA+AGG 0.523360 7.2:-23164488 MS.gene73369:CDS
TGCTTCATACATGCAACACC+AGG 0.523693 7.2:-23166868 MS.gene73369:CDS
CAAAGCATTCAACAAGAAAG+AGG 0.526195 7.2:-23166907 MS.gene73369:CDS
TTAGCTTAAGCTTAAACCAT+GGG 0.541808 7.2:-23167011 MS.gene73369:CDS
TTTGGAATGCTGGTAGCCCA+TGG 0.567597 7.2:+23166995 None:intergenic
ACGATCGGAAGAACTAGCAT+TGG 0.573764 7.2:-23165873 MS.gene73369:CDS
TAAACCTCATACACCGATGG+AGG 0.585410 7.2:+23165938 None:intergenic
TGAGTTTGGTGAAAATATCA+TGG 0.591260 7.2:-23164505 MS.gene73369:CDS
AGTCTTCCATAGAAGCTCCC+TGG 0.600448 7.2:+23166850 None:intergenic
ATCAGGTAGTAACTTCAAGA+TGG 0.603639 7.2:+23166936 None:intergenic
AACTTACTTGTGATAGCCAA+TGG 0.609905 7.2:+23166782 None:intergenic
GTCGTTGATAGCAAGATGAG+AGG 0.620263 7.2:-23164579 MS.gene73369:CDS
ACTAGCATTGGATGGTGTGA+TGG 0.625972 7.2:-23165861 MS.gene73369:CDS
AACAAGAATGAGCCCTCCAT+CGG 0.627728 7.2:-23165951 MS.gene73369:CDS
TAGATATTACCCTTGATGAG+TGG 0.628626 7.2:+23165977 None:intergenic
TCGGAAGAACTAGCATTGGA+TGG 0.630987 7.2:-23165869 MS.gene73369:CDS
AAAGCAGAACCACTCATCAA+GGG 0.632811 7.2:-23165986 MS.gene73369:CDS
GGAAGTGAAACAAGTGATCG+AGG 0.635174 7.2:-23164685 MS.gene73369:CDS
AAACCTCATACACCGATGGA+GGG 0.643833 7.2:+23165939 None:intergenic
AGGCATGGTACTCAACGAGA+TGG 0.648975 7.2:-23165783 MS.gene73369:CDS
ACATAAACCTCATACACCGA+TGG 0.652143 7.2:+23165935 None:intergenic
ACTCAACGAGATGGTCCAAG+AGG 0.710119 7.2:-23165774 MS.gene73369:intron
GCTTCATACATGCAACACCA+GGG 0.712541 7.2:-23166867 MS.gene73369:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATCTATGTAATTAT+TGG + chr7.2:23164747-23164766 None:intergenic 10.0%
!! AAAAAATCTATGTAATTATT+GGG + chr7.2:23164746-23164765 None:intergenic 10.0%
!! TCAAATAGATAAATAATAAT+AGG + chr7.2:23165229-23165248 None:intergenic 10.0%
!! TTATTATTTATCTATTTGAT+AGG - chr7.2:23165230-23165249 MS.gene73369:intron 10.0%
!!! AAGTTATATAGTTTTTTTTT+AGG + chr7.2:23166178-23166197 None:intergenic 10.0%
!!! AGTTATATAGTTTTTTTTTA+GGG + chr7.2:23166177-23166196 None:intergenic 10.0%
!!! TTTTTTTTTGAAAGATTTTA+GGG + chr7.2:23166145-23166164 None:intergenic 10.0%
!!! TTTTTTTTTTGAAAGATTTT+AGG + chr7.2:23166146-23166165 None:intergenic 10.0%
!! AATAATAATACACAAAAAGA+AGG + chr7.2:23165141-23165160 None:intergenic 15.0%
!! ATATTAACAAAGATTCAAAT+TGG + chr7.2:23166687-23166706 None:intergenic 15.0%
!! ATTGATGAATTAAAACTATT+TGG + chr7.2:23164818-23164837 None:intergenic 15.0%
!! TGGTAAAAAAAAAAATATTC+AGG + chr7.2:23164914-23164933 None:intergenic 15.0%
!! TTCAAAAGTAAAAATATTGT+AGG + chr7.2:23166080-23166099 None:intergenic 15.0%
!!! ACAAAACATAATTTTTATTC+CGG + chr7.2:23166758-23166777 None:intergenic 15.0%
!!! CTAATAAAATTCTTATTTGT+TGG + chr7.2:23164934-23164953 None:intergenic 15.0%
!!! TATTTATCTTTTTTTGATGA+TGG - chr7.2:23165157-23165176 MS.gene73369:intron 15.0%
!! AAAAATAATTTGGGAAGTTT+AGG - chr7.2:23166345-23166364 MS.gene73369:intron 20.0%
!! AAATTGAGAACACATAATTA+AGG + chr7.2:23165309-23165328 None:intergenic 20.0%
!! AACACAATATTGAAAAAATC+TGG + chr7.2:23167143-23167162 None:intergenic 20.0%
!! AGACAAATGTACTATAAAAA+GGG - chr7.2:23165111-23165130 MS.gene73369:intron 20.0%
!! CGATAATATTGTTGTATTTA+CGG - chr7.2:23165088-23165107 MS.gene73369:intron 20.0%
!! GAATTTGAAAATGATGATAT+CGG - chr7.2:23164430-23164449 MS.gene73369:CDS 20.0%
!! GTTGAAGTCAAAAATAATTT+GGG - chr7.2:23166336-23166355 MS.gene73369:intron 20.0%
!! TCTATTGATCATCATATTAT+TGG - chr7.2:23166720-23166739 MS.gene73369:intron 20.0%
!! TGAATTAAAACTATTTGGTT+TGG + chr7.2:23164813-23164832 None:intergenic 20.0%
!! TGTTGAAGTCAAAAATAATT+TGG - chr7.2:23166335-23166354 MS.gene73369:intron 20.0%
!!! AAATTTGGTGATCTTAAAAA+AGG - chr7.2:23165049-23165068 MS.gene73369:intron 20.0%
!!! ACATTGAAGACTTTTAAAAT+CGG - chr7.2:23166927-23166946 MS.gene73369:CDS 20.0%
!!! ATATCACCATATATTTTCAT+TGG + chr7.2:23166294-23166313 None:intergenic 20.0%
!!! GATCTTGTTTTATTTGTTAA+TGG - chr7.2:23165525-23165544 MS.gene73369:intron 20.0%
!!! TTAATAAACTTTTCCTTTGT+GGG - chr7.2:23166516-23166535 MS.gene73369:intron 20.0%
!!! TTTAATAAACTTTTCCTTTG+TGG - chr7.2:23166515-23166534 MS.gene73369:intron 20.0%
! AAAGATATTAATTACTCCAC+TGG - chr7.2:23166241-23166260 MS.gene73369:intron 25.0%
! AATCAATCATATTTACCTCT+TGG + chr7.2:23165810-23165829 None:intergenic 25.0%
! ATAGATCATTGAGGTAAATT+TGG + chr7.2:23164592-23164611 None:intergenic 25.0%
! ATCAATTAAGTTAAGACTTG+TGG - chr7.2:23166017-23166036 MS.gene73369:intron 25.0%
! ATGAACTTAACTTAGTTGAT+AGG + chr7.2:23165201-23165220 None:intergenic 25.0%
! ATTTGATATCCATTTCATCT+TGG - chr7.2:23166428-23166447 MS.gene73369:intron 25.0%
! GAGACAAATGTACTATAAAA+AGG - chr7.2:23165110-23165129 MS.gene73369:intron 25.0%
! TCTATATCATCCTACTATAA+AGG - chr7.2:23166860-23166879 MS.gene73369:CDS 25.0%
! TGATGGTACTAACTTTAATT+GGG - chr7.2:23165722-23165741 MS.gene73369:intron 25.0%
! TTAATTGGGAGAGAAAATAA+TGG - chr7.2:23165736-23165755 MS.gene73369:intron 25.0%
! TTGCATCCAATGAAAATATA+TGG - chr7.2:23166285-23166304 MS.gene73369:intron 25.0%
! TTTAGTTGAAGAAGCAAAAT+TGG - chr7.2:23166821-23166840 MS.gene73369:CDS 25.0%
! TTTATAGTAGGATGATATAG+AGG + chr7.2:23166861-23166880 None:intergenic 25.0%
! TTTGTTAATGGTGGTATATT+AGG - chr7.2:23165537-23165556 MS.gene73369:intron 25.0%
!! ACACAACTTTTAATAGTTGT+TGG - chr7.2:23164453-23164472 MS.gene73369:CDS 25.0%
!! CATTTTCATATAGATCATTG+AGG + chr7.2:23164601-23164620 None:intergenic 25.0%
!! TAATAAACTTTTCCTTTGTG+GGG - chr7.2:23166517-23166536 MS.gene73369:intron 25.0%
!!! CTTGTTTTATTTGTTAATGG+TGG - chr7.2:23165528-23165547 MS.gene73369:intron 25.0%
!!! TTAACTTAGTTGATAGGAAT+GGG + chr7.2:23165195-23165214 None:intergenic 25.0%
AAATATTGTAGGAAGCGATT+AGG + chr7.2:23166069-23166088 None:intergenic 30.0%
AAATGACTTTATACTACCAG+TGG + chr7.2:23166260-23166279 None:intergenic 30.0%
AAGAGGAAACTCAATCATTT+AGG - chr7.2:23165485-23165504 MS.gene73369:intron 30.0%
AAGTTGCAATTACAAGATAG+AGG + chr7.2:23166474-23166493 None:intergenic 30.0%
AATTACAAGATAGAGGAAAG+AGG + chr7.2:23166467-23166486 None:intergenic 30.0%
CAAAGATTCAAATTGGCAAA+AGG + chr7.2:23166680-23166699 None:intergenic 30.0%
GTGATGGTACTAACTTTAAT+TGG - chr7.2:23165721-23165740 MS.gene73369:intron 30.0%
TCATGGATGAATTATTCTCA+AGG - chr7.2:23167078-23167097 MS.gene73369:CDS 30.0%
TCGAAAAAATTGAACTACTG+TGG - chr7.2:23164840-23164859 MS.gene73369:intron 30.0%
TCTCAATACACACAAAAAGA+GGG + chr7.2:23165283-23165302 None:intergenic 30.0%
TGTTTCACTTCCTTTATAGT+AGG + chr7.2:23166873-23166892 None:intergenic 30.0%
TTAGCTTAAGCTTAAACCAT+GGG - chr7.2:23164555-23164574 MS.gene73369:CDS 30.0%
TTATTGGATGATCTAGATAC+CGG - chr7.2:23166736-23166755 MS.gene73369:intron 30.0%
TTCTATAAAATTCCCCTGTA+GGG - chr7.2:23166798-23166817 MS.gene73369:CDS 30.0%
TTCTCAATACACACAAAAAG+AGG + chr7.2:23165284-23165303 None:intergenic 30.0%
TTTCTATAAAATTCCCCTGT+AGG - chr7.2:23166797-23166816 MS.gene73369:CDS 30.0%
! ACAGGGGAATTTTATAGAAA+AGG + chr7.2:23166797-23166816 None:intergenic 30.0%
! ATTAGCTTAAGCTTAAACCA+TGG - chr7.2:23164554-23164573 MS.gene73369:CDS 30.0%
! GCTTTCTTGGTTGAATATTT+TGG + chr7.2:23165565-23165584 None:intergenic 30.0%
! TCTCTTTTAATAGCTGAGTT+TGG - chr7.2:23167047-23167066 MS.gene73369:CDS 30.0%
! TGAGTTTGGTGAAAATATCA+TGG - chr7.2:23167061-23167080 MS.gene73369:CDS 30.0%
! TGGTGAAATTACTTCTTTTG+AGG - chr7.2:23165756-23165775 MS.gene73369:intron 30.0%
! TGTTGGAAAGTAGTTGATTT+AGG - chr7.2:23164470-23164489 MS.gene73369:CDS 30.0%
!! CTTAACTTAGTTGATAGGAA+TGG + chr7.2:23165196-23165215 None:intergenic 30.0%
!! TAACTTAGTTGATAGGAATG+GGG + chr7.2:23165194-23165213 None:intergenic 30.0%
!!! ATCTTTTTTTGATGATGGTC+TGG - chr7.2:23165162-23165181 MS.gene73369:intron 30.0%
!!! ATTACTTCTTTTGAGGTACT+AGG - chr7.2:23165763-23165782 MS.gene73369:intron 30.0%
!!! GAAGACTTTTAAAATCGGTT+GGG - chr7.2:23166932-23166951 MS.gene73369:CDS 30.0%
!!! TAGTTTTTTTTTCCCCACAA+AGG + chr7.2:23166532-23166551 None:intergenic 30.0%
!!! TGAAGACTTTTAAAATCGGT+TGG - chr7.2:23166931-23166950 MS.gene73369:CDS 30.0%
AAAACAAGCTCTGTGATACT+TGG + chr7.2:23167024-23167043 None:intergenic 35.0%
AACTTACTTGTGATAGCCAA+TGG + chr7.2:23164787-23164806 None:intergenic 35.0%
ATCAGGTAGTAACTTCAAGA+TGG + chr7.2:23164633-23164652 None:intergenic 35.0%
ATCCATTTCATCTTGGATTG+AGG - chr7.2:23166435-23166454 MS.gene73369:intron 35.0%
ATCCTCAATCCAAGATGAAA+TGG + chr7.2:23166440-23166459 None:intergenic 35.0%
ATTAGAAACTAGCGTCAAGA+CGG - chr7.2:23164949-23164968 MS.gene73369:intron 35.0%
ATTCTTCCTATTGTGTCCAT+TGG - chr7.2:23164768-23164787 MS.gene73369:intron 35.0%
ATTGAGTTTCCTCTTCAACA+TGG + chr7.2:23165480-23165499 None:intergenic 35.0%
CACATATTTCATACACGATG+TGG - chr7.2:23166621-23166640 MS.gene73369:intron 35.0%
CTCAATACACACAAAAAGAG+GGG + chr7.2:23165282-23165301 None:intergenic 35.0%
CTCTTTCTTGTTGAATGCTT+TGG + chr7.2:23164661-23164680 None:intergenic 35.0%
GAAGTTTAGGTCATTTGTAG+GGG - chr7.2:23166358-23166377 MS.gene73369:intron 35.0%
GAGGTTTATGTTGAGCAATT+TGG - chr7.2:23165643-23165662 MS.gene73369:intron 35.0%
GATCAACAATATCTTCTTGC+AGG + chr7.2:23166965-23166984 None:intergenic 35.0%
GGAAGTTTAGGTCATTTGTA+GGG - chr7.2:23166357-23166376 MS.gene73369:intron 35.0%
TAGATATTACCCTTGATGAG+TGG + chr7.2:23165592-23165611 None:intergenic 35.0%
TCAATACACACAAAAAGAGG+GGG + chr7.2:23165281-23165300 None:intergenic 35.0%
TGGGGAAAAAAAAACTAGCT+AGG - chr7.2:23166535-23166554 MS.gene73369:intron 35.0%
TTCTTCAACTAAACCCTACA+GGG + chr7.2:23166814-23166833 None:intergenic 35.0%
TTGAGTTTCCTCTTCAACAT+GGG + chr7.2:23165479-23165498 None:intergenic 35.0%
TTTCTTGTTGAATGCTTTGG+TGG + chr7.2:23164658-23164677 None:intergenic 35.0%
! CAAAGCATTCAACAAGAAAG+AGG - chr7.2:23164659-23164678 MS.gene73369:CDS 35.0%
! GAATTTTCTACAGTCACGAT+CGG - chr7.2:23165678-23165697 MS.gene73369:intron 35.0%
! TTGAGGTAAATTTGGAATGC+TGG + chr7.2:23164584-23164603 None:intergenic 35.0%
!! GTTGATTTAGGTTGTTCTTC+AGG - chr7.2:23164482-23164501 MS.gene73369:CDS 35.0%
AAAACCAAACGACGTGATCT+AGG + chr7.2:23165980-23165999 None:intergenic 40.0%
AAACAAGTGATCGAGGTAGA+AGG - chr7.2:23166888-23166907 MS.gene73369:CDS 40.0%
AAAGCAGAACCACTCATCAA+GGG - chr7.2:23165580-23165599 MS.gene73369:intron 40.0%
AATACACACAAAAAGAGGGG+GGG + chr7.2:23165279-23165298 None:intergenic 40.0%
ACATAAACCTCATACACCGA+TGG + chr7.2:23165634-23165653 None:intergenic 40.0%
ACATACAAGTGTAGAGGTTG+AGG - chr7.2:23165948-23165967 MS.gene73369:CDS 40.0%
ACTCACACATACAAGTGTAG+AGG - chr7.2:23165942-23165961 MS.gene73369:CDS 40.0%
CAATACACACAAAAAGAGGG+GGG + chr7.2:23165280-23165299 None:intergenic 40.0%
CTTCTTCAACTAAACCCTAC+AGG + chr7.2:23166815-23166834 None:intergenic 40.0%
GAGACAACCATAAGTGCATT+TGG + chr7.2:23164509-23164528 None:intergenic 40.0%
GGGAAGTTTAGGTCATTTGT+AGG - chr7.2:23166356-23166375 MS.gene73369:intron 40.0%
TCTTCAACTAAACCCTACAG+GGG + chr7.2:23166813-23166832 None:intergenic 40.0%
TGAATGCTTTGGTGGAAATC+AGG + chr7.2:23164650-23164669 None:intergenic 40.0%
TGATAGCCAATGGACACAAT+AGG + chr7.2:23164777-23164796 None:intergenic 40.0%
TTCAGGACCAAATGCACTTA+TGG - chr7.2:23164499-23164518 MS.gene73369:CDS 40.0%
TTTAGGTCATTTGTAGGGGT+AGG - chr7.2:23166362-23166381 MS.gene73369:intron 40.0%
!!! TTCTTTTGAGGTACTAGGCA+TGG - chr7.2:23165768-23165787 MS.gene73369:intron 40.0%
AAACCTCATACACCGATGGA+GGG + chr7.2:23165630-23165649 None:intergenic 45.0%
AACAAGAATGAGCCCTCCAT+CGG - chr7.2:23165615-23165634 MS.gene73369:intron 45.0%
ACGATCGGAAGAACTAGCAT+TGG - chr7.2:23165693-23165712 MS.gene73369:intron 45.0%
ATACACACAAAAAGAGGGGG+GGG + chr7.2:23165278-23165297 None:intergenic 45.0%
CAAACCTAGATCACGTCGTT+TGG - chr7.2:23165973-23165992 MS.gene73369:CDS 45.0%
CAAGAAAGAGGAGAGAATCC+TGG - chr7.2:23164671-23164690 MS.gene73369:CDS 45.0%
GAAAGCAGAACCACTCATCA+AGG - chr7.2:23165579-23165598 MS.gene73369:intron 45.0%
GCATGTATGAAGCATGTTCC+AGG + chr7.2:23164692-23164711 None:intergenic 45.0%
GCTTCATACATGCAACACCA+GGG - chr7.2:23164699-23164718 MS.gene73369:CDS 45.0%
GGAAGTGAAACAAGTGATCG+AGG - chr7.2:23166881-23166900 MS.gene73369:CDS 45.0%
TAAACCTCATACACCGATGG+AGG + chr7.2:23165631-23165650 None:intergenic 45.0%
TGCTTCATACATGCAACACC+AGG - chr7.2:23164698-23164717 MS.gene73369:CDS 45.0%
TGTAGGGGTAGGAGTTCAAT+TGG - chr7.2:23166373-23166392 MS.gene73369:intron 45.0%
TTTCCTCTTCAACATGGGAG+TGG + chr7.2:23165474-23165493 None:intergenic 45.0%
! ACTAGCATTGGATGGTGTGA+TGG - chr7.2:23165705-23165724 MS.gene73369:intron 45.0%
! GATGAGTGGTTCTGCTTTCT+TGG + chr7.2:23165578-23165597 None:intergenic 45.0%
! TCGGAAGAACTAGCATTGGA+TGG - chr7.2:23165697-23165716 MS.gene73369:intron 45.0%
!! GTCGTTGATAGCAAGATGAG+AGG - chr7.2:23166987-23167006 MS.gene73369:CDS 45.0%
!! ATTATTGAAATAAAAAAATT+TGG - chr7.2:23165034-23165053 MS.gene73369:intron 5.0%
ACTCAACGAGATGGTCCAAG+AGG - chr7.2:23165792-23165811 MS.gene73369:CDS 50.0%
AGGCATGGTACTCAACGAGA+TGG - chr7.2:23165783-23165802 MS.gene73369:CDS 50.0%
AGTCTTCCATAGAAGCTCCC+TGG + chr7.2:23164719-23164738 None:intergenic 50.0%
TACACACAAAAAGAGGGGGG+GGG + chr7.2:23165277-23165296 None:intergenic 50.0%
TGACCACTCCCATGTTGAAG+AGG - chr7.2:23165468-23165487 MS.gene73369:intron 50.0%
! TTTGGAATGCTGGTAGCCCA+TGG + chr7.2:23164574-23164593 None:intergenic 50.0%
ACACACAAAAAGAGGGGGGG+GGG + chr7.2:23165276-23165295 None:intergenic 55.0%
GCAACACCAGGGAGCTTCTA+TGG - chr7.2:23164710-23164729 MS.gene73369:CDS 55.0%
ACACAAAAAGAGGGGGGGGG+GGG + chr7.2:23165274-23165293 None:intergenic 60.0%
CACACAAAAAGAGGGGGGGG+GGG + chr7.2:23165275-23165294 None:intergenic 60.0%
GAGCCCTCCATCGGTGTATG+AGG - chr7.2:23165624-23165643 MS.gene73369:intron 60.0%
ACAAAAAGAGGGGGGGGGGG+GGG + chr7.2:23165272-23165291 None:intergenic 65.0%
CACAAAAAGAGGGGGGGGGG+GGG + chr7.2:23165273-23165292 None:intergenic 65.0%
AAAAAGAGGGGGGGGGGGGG+GGG + chr7.2:23165270-23165289 None:intergenic 70.0%
CAAAAAGAGGGGGGGGGGGG+GGG + chr7.2:23165271-23165290 None:intergenic 70.0%
AAAAGAGGGGGGGGGGGGGG+GGG + chr7.2:23165269-23165288 None:intergenic 75.0%
! AAAGAGGGGGGGGGGGGGGG+GGG + chr7.2:23165268-23165287 None:intergenic 80.0%
! AAGAGGGGGGGGGGGGGGGG+GGG + chr7.2:23165267-23165286 None:intergenic 85.0%
! GGGGGGGGGGGGGGGGAAGA+AGG + chr7.2:23165258-23165277 None:intergenic 85.0%
! AGAGGGGGGGGGGGGGGGGG+GGG + chr7.2:23165266-23165285 None:intergenic 90.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + chr7.2:23165265-23165284 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 23164404 23167184 23164404 ID=MS.gene73369
chr7.2 mRNA 23164404 23167184 23164404 ID=MS.gene73369.t1;Parent=MS.gene73369
chr7.2 exon 23166789 23167184 23166789 ID=MS.gene73369.t1.exon1;Parent=MS.gene73369.t1
chr7.2 CDS 23166789 23167184 23166789 ID=cds.MS.gene73369.t1;Parent=MS.gene73369.t1
chr7.2 exon 23165775 23166029 23165775 ID=MS.gene73369.t1.exon2;Parent=MS.gene73369.t1
chr7.2 CDS 23165775 23166029 23165775 ID=cds.MS.gene73369.t1;Parent=MS.gene73369.t1
chr7.2 exon 23164404 23164769 23164404 ID=MS.gene73369.t1.exon3;Parent=MS.gene73369.t1
chr7.2 CDS 23164404 23164769 23164404 ID=cds.MS.gene73369.t1;Parent=MS.gene73369.t1
Gene Sequence

>MS.gene73369

ATGAAGGTGAAGACTTTACTTGATGAGAATTTGAAAATGATGATATCGGACACAACTTTTAATAGTTGTTGGAAAGTAGTTGATTTAGGTTGTTCTTCAGGACCAAATGCACTTATGGTTGTCTCAAATATCATGAAAGTCATTGATAAAATTAGCTTAAGCTTAAACCATGGGCTACCAGCATTCCAAATTTACCTCAATGATCTATATGAAAATGATTTCAATACCATCTTGAAGTTACTACCTGATTTCCACCAAAGCATTCAACAAGAAAGAGGAGAGAATCCTGGAACATGCTTCATACATGCAACACCAGGGAGCTTCTATGGAAGACTGTTTCCCAATAATTACATAGATTTTTTTCATTCTTCCTATTGTGTCCATTGGCTATCACAAGTAAGTTGCTCCAAACCAAATAGTTTTAATTCATCAATTATCGAAAAAATTGAACTACTGTGGTAAATTAGAGACATAAATAATGATTTTTTTTTTTTCTAATTTTTCTATCCTGAATATTTTTTTTTTTACCAACAAATAAGAATTTTATTAGAAACTAGCGTCAAGACGGAAATTGTCTTAAATTTAGTTAAATATGTCTAATTAATTTAGATATATTTAACTACTAAAATGATTATTGAAATAAAAAAATTTGGTGATCTTAAAAAAGGATAAGAAAATCTCTTTCGATAATATTGTTGTATTTACGGAGACAAATGTACTATAAAAAGGGATTTCCTTCTTTTTGTGTATTATTATTTATCTTTTTTTGATGATGGTCTGGTTTGAACCCCATTCCTATCAACTAAGTTAAGTTCATGAGAACCTATTATTATTTATCTATTTGATAGGTGCCTTCTTCCCCCCCCCCCCCCCCCCCCCTCTTTTTGTGTGTATTGAGAATACCTTAATTATGTGTTCTCAATTTAATACAACATTTTAGCTGTTTTTAAAAAACATACACTACGTATCAACGTTTAATTCGTAGTATTTTGCATTAAATTAAGTTTTTTTTTTTTTTGTAAATAGTCTATTTTACTAAGATTATTTAGACTCAGCATTATGAATGACCACTCCCATGTTGAAGAGGAAACTCAATCATTTAGGTGTCTTTACATATAGTTGATCTTGTTTTATTTGTTAATGGTGGTATATTAGGCACCAAAATATTCAACCAAGAAAGCAGAACCACTCATCAAGGGTAATATCTACATAACAAGAATGAGCCCTCCATCGGTGTATGAGGTTTATGTTGAGCAATTTGGAAGAGATTTCAAGAATTTTCTACAGTCACGATCGGAAGAACTAGCATTGGATGGTGTGATGGTACTAACTTTAATTGGGAGAGAAAATAATGGTGAAATTACTTCTTTTGAGGTACTAGGCATGGTACTCAACGAGATGGTCCAAGAGGTAAATATGATTGATTAATATATGTTTGATAATTAATCAGTATATGAAAGCTTAATTAAACACTTAAAAATAGTACACACTTATAAATAGTCGATTTTTTATAGACAAAATGACAAATTATCATTGAAACTCACACATACAAGTGTAGAGGTTGAGGTTCAAACCTAGATCACGTCGTTTGGTTTTACAATTTCAAAAAATTTATCAATTAAGTTAAGACTTGTGGAATGATAATACACGCACTTTATATCTCCTAATCGCTTCCTACAATATTTTTACTTTTGAAATTTAATAACGATAGAAGATATAATACAACTATATAACTTGACCCTAAAATCTTTCAAAAAAAAAAAAACTTGACCCTAAAAAAAAACTATATAACTTGACATTTTATATCATATATAATTTTGTAAAAAAAATCATATATAAAGATATTAATTACTCCACTGGTAGTATAAAGTCATTTTACACTTGCATCCAATGAAAATATATGGTGATATAATGTCAATTGTTATGAAAATTGTTGAAGTCAAAAATAATTTGGGAAGTTTAGGTCATTTGTAGGGGTAGGAGTTCAATTGGTGAGTGTGAAGTATAATAATCATCTTTCGCTAATTTGATATCCATTTCATCTTGGATTGAGGATTTCTCCTCTTTCCTCTATCTTGTAATTGCAACTTATTATTTTCTGAATTCTTCTTTTTAATAAACTTTTCCTTTGTGGGGAAAAAAAAACTAGCTAGGATGAATTATTCTAGTTTTTAAAATACTCTCAATTTTTTGTTGATAATTTTAATCGTTCTTTTACACATATTTCATACACGATGTGGTACATGTAGTCATGTTATTATTTTTACAATTATCCTTTTGCCAATTTGAATCTTTGTTAATATAGTATTTATGTTTTCTATTGATCATCATATTATTGGATGATCTAGATACCGGAATAAAAATTATGTTTTGTTTTAACTTATGCTTTGCCTTTTCTATAAAATTCCCCTGTAGGGTTTAGTTGAAGAAGCAAAATTGGACTTGTTTAATTTGCCTCTATATCATCCTACTATAAAGGAAGTGAAACAAGTGATCGAGGTAGAAGGATCTTTTATCATTCAAACATTGAAGACTTTTAAAATCGGTTGGGATGCAAACCTGCAAGAAGATATTGTTGATCATGTCGTTGATAGCAAGATGAGAGGAGAGTTCATAGCCAAGTATCACAGAGCTTGTTTTGAATCTCTTTTAATAGCTGAGTTTGGTGAAAATATCATGGATGAATTATTCTCAAGGTTTGCAAAGCTAATTGCACAATTCATTGAGATAAAGTCACCAGATTTTTTCAATATTGTGTTGTTTATGACCAAGTGTCCTTAA
Protein sequence

>MS.gene73369.t1

MKVKTLLDENLKMMISDTTFNSCWKVVDLGCSSGPNALMVVSNIMKVIDKISLSLNHGLPAFQIYLNDLYENDFNTILKLLPDFHQSIQQERGENPGTCFIHATPGSFYGRLFPNNYIDFFHSSYCVHWLSQAPKYSTKKAEPLIKGNIYITRMSPPSVYEVYVEQFGRDFKNFLQSRSEELALDGVMVLTLIGRENNGEITSFEVLGMVLNEMVQEGLVEEAKLDLFNLPLYHPTIKEVKQVIEVEGSFIIQTLKTFKIGWDANLQEDIVDHVVDSKMRGEFIAKYHRACFESLLIAEFGENIMDELFSRFAKLIAQFIEIKSPDFFNIVLFMTKCP