Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52303.t1 | XP_003624535.1 | 95.2 | 335 | 15 | 1 | 1 | 334 | 30 | 364 | 1.00E-178 | 636 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52303.t1 | Q9AVK0 | 42.2 | 341 | 182 | 6 | 2 | 333 | 31 | 365 | 7.4e-69 | 262.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52303.t1 | G7KYA2 | 95.2 | 335 | 15 | 1 | 1 | 334 | 30 | 364 | 7.3e-179 | 636.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52303.t1 | MTR_7g084620 | 95.224 | 335 | 15 | 1 | 1 | 334 | 30 | 364 | 0.0 | 653 |
| MS.gene52303.t1 | MTR_7g084330 | 82.388 | 335 | 43 | 2 | 1 | 334 | 13 | 332 | 0.0 | 556 |
| MS.gene52303.t1 | MTR_3g467560 | 79.586 | 338 | 60 | 4 | 1 | 333 | 54 | 387 | 0.0 | 546 |
| MS.gene52303.t1 | MTR_7g084350 | 70.118 | 338 | 94 | 4 | 1 | 333 | 28 | 363 | 4.94e-176 | 492 |
| MS.gene52303.t1 | MTR_3g117060 | 50.882 | 340 | 158 | 6 | 1 | 333 | 30 | 367 | 7.50e-115 | 337 |
| MS.gene52303.t1 | MTR_8g077040 | 40.123 | 324 | 171 | 7 | 26 | 334 | 54 | 369 | 1.08e-80 | 250 |
| MS.gene52303.t1 | MTR_4g018820 | 41.325 | 317 | 164 | 7 | 26 | 333 | 54 | 357 | 2.73e-80 | 249 |
| MS.gene52303.t1 | MTR_8g076900 | 40.059 | 337 | 181 | 6 | 7 | 333 | 35 | 360 | 2.40e-79 | 246 |
| MS.gene52303.t1 | MTR_5g020940 | 41.176 | 323 | 168 | 7 | 26 | 333 | 64 | 379 | 6.97e-79 | 246 |
| MS.gene52303.t1 | MTR_6g056070 | 39.812 | 319 | 167 | 6 | 24 | 333 | 53 | 355 | 4.01e-78 | 243 |
| MS.gene52303.t1 | MTR_1g022465 | 42.945 | 326 | 166 | 5 | 26 | 335 | 57 | 378 | 1.02e-75 | 238 |
| MS.gene52303.t1 | MTR_3g467270 | 38.390 | 323 | 176 | 6 | 26 | 333 | 53 | 367 | 6.48e-75 | 235 |
| MS.gene52303.t1 | MTR_1g022455 | 41.718 | 326 | 171 | 4 | 26 | 335 | 57 | 379 | 1.19e-73 | 232 |
| MS.gene52303.t1 | MTR_8g020700 | 37.092 | 337 | 186 | 6 | 7 | 333 | 35 | 355 | 4.87e-71 | 225 |
| MS.gene52303.t1 | MTR_8g020690 | 36.499 | 337 | 191 | 6 | 7 | 333 | 35 | 358 | 4.34e-69 | 220 |
| MS.gene52303.t1 | MTR_5g046110 | 39.623 | 318 | 171 | 6 | 26 | 333 | 114 | 420 | 2.31e-67 | 217 |
| MS.gene52303.t1 | MTR_5g093900 | 35.474 | 327 | 181 | 8 | 26 | 332 | 73 | 389 | 1.24e-55 | 186 |
| MS.gene52303.t1 | MTR_3g052700 | 36.513 | 304 | 165 | 7 | 26 | 311 | 71 | 364 | 2.56e-55 | 185 |
| MS.gene52303.t1 | MTR_8g076900 | 44.954 | 218 | 103 | 5 | 7 | 214 | 35 | 245 | 6.22e-54 | 178 |
| MS.gene52303.t1 | MTR_3g054330 | 35.505 | 307 | 165 | 8 | 26 | 311 | 63 | 357 | 1.12e-53 | 181 |
| MS.gene52303.t1 | MTR_7g084340 | 68.908 | 119 | 37 | 0 | 215 | 333 | 11 | 129 | 3.67e-52 | 169 |
| MS.gene52303.t1 | MTR_1g108660 | 34.472 | 322 | 177 | 10 | 16 | 328 | 33 | 329 | 2.05e-51 | 174 |
| MS.gene52303.t1 | MTR_8g020700 | 40.826 | 218 | 113 | 4 | 7 | 214 | 35 | 246 | 8.30e-47 | 159 |
| MS.gene52303.t1 | MTR_8g077030 | 31.013 | 316 | 125 | 7 | 1 | 311 | 29 | 256 | 3.93e-34 | 131 |
| MS.gene52303.t1 | MTR_6g015620 | 46.667 | 120 | 63 | 1 | 216 | 334 | 18 | 137 | 2.94e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52303.t1 | AT5G66430 | 40.248 | 323 | 174 | 6 | 2 | 315 | 23 | 335 | 5.14e-74 | 233 |
| MS.gene52303.t1 | AT5G38020 | 40.000 | 330 | 173 | 6 | 2 | 315 | 28 | 348 | 2.24e-73 | 231 |
| MS.gene52303.t1 | AT5G38020 | 40.881 | 318 | 163 | 6 | 14 | 315 | 1 | 309 | 3.40e-73 | 229 |
| MS.gene52303.t1 | AT3G11480 | 39.941 | 338 | 183 | 4 | 3 | 333 | 54 | 378 | 4.71e-73 | 231 |
| MS.gene52303.t1 | AT1G19640 | 38.617 | 347 | 185 | 7 | 13 | 333 | 43 | 387 | 7.00e-71 | 226 |
| MS.gene52303.t1 | AT3G21950 | 39.937 | 318 | 166 | 6 | 14 | 315 | 40 | 348 | 8.65e-71 | 224 |
| MS.gene52303.t1 | AT5G04370 | 41.772 | 316 | 165 | 7 | 25 | 333 | 86 | 389 | 4.71e-69 | 221 |
| MS.gene52303.t1 | AT5G04370 | 41.772 | 316 | 165 | 7 | 25 | 333 | 91 | 394 | 4.94e-69 | 221 |
| MS.gene52303.t1 | AT5G04370 | 41.772 | 316 | 165 | 7 | 25 | 333 | 105 | 408 | 5.60e-69 | 221 |
| MS.gene52303.t1 | AT5G04380 | 38.511 | 309 | 173 | 6 | 14 | 315 | 1 | 299 | 1.75e-64 | 207 |
| MS.gene52303.t1 | AT3G21950 | 36.286 | 350 | 166 | 7 | 14 | 315 | 40 | 380 | 5.00e-64 | 208 |
| MS.gene52303.t1 | AT5G04380 | 38.170 | 317 | 179 | 6 | 6 | 315 | 64 | 370 | 5.69e-64 | 207 |
| MS.gene52303.t1 | AT4G36470 | 37.072 | 321 | 181 | 7 | 26 | 333 | 57 | 369 | 1.63e-63 | 206 |
| MS.gene52303.t1 | AT2G14060 | 35.077 | 325 | 198 | 4 | 2 | 319 | 36 | 354 | 4.00e-62 | 202 |
| MS.gene52303.t1 | AT5G04380 | 37.224 | 317 | 175 | 7 | 6 | 315 | 60 | 359 | 4.07e-59 | 195 |
| MS.gene52303.t1 | AT1G15125 | 33.724 | 341 | 191 | 10 | 8 | 335 | 31 | 349 | 3.06e-54 | 181 |
| MS.gene52303.t1 | AT5G55250 | 34.259 | 324 | 182 | 9 | 5 | 308 | 8 | 320 | 1.28e-50 | 172 |
| MS.gene52303.t1 | AT5G55250 | 35.333 | 300 | 164 | 8 | 28 | 308 | 70 | 358 | 2.55e-50 | 172 |
| MS.gene52303.t1 | AT5G38780 | 34.868 | 304 | 162 | 8 | 26 | 315 | 10 | 291 | 7.64e-49 | 166 |
| MS.gene52303.t1 | AT5G38780 | 33.537 | 328 | 181 | 9 | 2 | 315 | 36 | 340 | 1.08e-48 | 167 |
| MS.gene52303.t1 | AT1G68040 | 34.700 | 317 | 177 | 11 | 24 | 330 | 61 | 357 | 1.49e-47 | 164 |
| MS.gene52303.t1 | AT2G14060 | 41.624 | 197 | 109 | 2 | 2 | 198 | 36 | 226 | 1.39e-46 | 158 |
| MS.gene52303.t1 | AT5G37970 | 34.069 | 317 | 178 | 9 | 6 | 311 | 41 | 337 | 2.67e-46 | 161 |
| MS.gene52303.t1 | AT5G37990 | 33.548 | 310 | 173 | 9 | 14 | 311 | 49 | 337 | 4.92e-46 | 160 |
| MS.gene52303.t1 | AT5G38100 | 32.459 | 305 | 173 | 6 | 22 | 314 | 31 | 314 | 1.22e-43 | 153 |
| MS.gene52303.t1 | AT5G38100 | 32.459 | 305 | 173 | 6 | 22 | 314 | 54 | 337 | 2.35e-43 | 153 |
| MS.gene52303.t1 | AT4G26420 | 30.435 | 322 | 199 | 7 | 16 | 319 | 46 | 360 | 3.06e-41 | 148 |
| MS.gene52303.t1 | AT5G56300 | 30.124 | 322 | 196 | 8 | 25 | 330 | 68 | 376 | 5.00e-39 | 142 |
| MS.gene52303.t1 | AT3G44860 | 35.745 | 235 | 130 | 4 | 26 | 251 | 53 | 275 | 2.26e-38 | 139 |
| MS.gene52303.t1 | AT3G44870 | 35.193 | 233 | 131 | 4 | 26 | 251 | 53 | 272 | 4.67e-38 | 139 |
| MS.gene52303.t1 | AT1G15125 | 36.364 | 220 | 119 | 7 | 8 | 217 | 31 | 239 | 1.21e-35 | 130 |
| MS.gene52303.t1 | AT3G44840 | 29.167 | 288 | 175 | 5 | 26 | 306 | 53 | 318 | 1.94e-35 | 132 |
| MS.gene52303.t1 | AT1G66720 | 30.924 | 249 | 145 | 6 | 14 | 251 | 48 | 280 | 5.12e-32 | 123 |
| MS.gene52303.t1 | AT1G66700 | 30.952 | 252 | 141 | 8 | 14 | 251 | 48 | 280 | 2.61e-31 | 121 |
| MS.gene52303.t1 | AT1G66690 | 27.950 | 322 | 183 | 10 | 14 | 323 | 48 | 332 | 2.38e-29 | 115 |
| MS.gene52303.t1 | AT4G26420 | 33.871 | 186 | 112 | 5 | 16 | 195 | 46 | 226 | 4.48e-27 | 107 |
| MS.gene52303.t1 | AT4G26420 | 33.871 | 186 | 112 | 5 | 16 | 195 | 34 | 214 | 9.52e-27 | 107 |
| MS.gene52303.t1 | AT5G38100 | 35.714 | 168 | 98 | 3 | 22 | 186 | 54 | 214 | 7.62e-26 | 103 |
| MS.gene52303.t1 | AT5G38100 | 35.714 | 168 | 98 | 3 | 22 | 186 | 54 | 214 | 8.78e-26 | 103 |
| MS.gene52303.t1 | AT1G66700 | 31.844 | 179 | 102 | 5 | 14 | 188 | 48 | 210 | 6.40e-22 | 93.6 |
Find 57 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTGGTCAAATCTTTC+GGG | 0.149105 | 7.3:-24002060 | None:intergenic |
| GTTTAGTGGTTCTTCATTCT+TGG | 0.192917 | 7.3:-24002074 | None:intergenic |
| TTACTATATTTAATGATTCT+TGG | 0.221000 | 7.3:-24003305 | None:intergenic |
| ACTTCTGCTCAAGGGGTAAT+TGG | 0.224077 | 7.3:+24002259 | MS.gene52303:CDS |
| GAGATGGCCATTAGGGTATT+TGG | 0.227439 | 7.3:-24001158 | None:intergenic |
| TCATTCTTGGTCAAATCTTT+CGG | 0.243692 | 7.3:-24002061 | None:intergenic |
| ATGATGGCACTAACATTTAT+TGG | 0.268332 | 7.3:+24002220 | MS.gene52303:CDS |
| GCCGATTTAGGTTGCTCTTC+AGG | 0.273089 | 7.3:+24001134 | MS.gene52303:CDS |
| TGTTGGAAAATAGCCGATTT+AGG | 0.283294 | 7.3:+24001122 | MS.gene52303:CDS |
| TTGAGATAAATTTGAAATAC+TGG | 0.283679 | 7.3:-24001236 | None:intergenic |
| TTTGGTCGAAGAGGAGAAAT+TGG | 0.309457 | 7.3:+24002955 | MS.gene52303:CDS |
| ATTCCTCATATTGTCTTCAT+TGG | 0.311289 | 7.3:+24001414 | MS.gene52303:CDS |
| GTGTCCAACAAAAGTGTAAA+AGG | 0.338917 | 7.3:+24001098 | MS.gene52303:CDS |
| TAAATATTTCCCTTGTTTAG+TGG | 0.357448 | 7.3:-24002088 | None:intergenic |
| TTGTCTTCATTGGCTTTCTC+AGG | 0.372700 | 7.3:+24001424 | MS.gene52303:CDS |
| AGATATTAGAGATGGCCATT+AGG | 0.374134 | 7.3:-24001166 | None:intergenic |
| AGCCTTCCATAAAAGTTTCC+TGG | 0.397514 | 7.3:-24001362 | None:intergenic |
| GATATTAGAGATGGCCATTA+GGG | 0.407082 | 7.3:-24001165 | None:intergenic |
| TCCTGAAGAGCAACCTAAAT+CGG | 0.412207 | 7.3:-24001135 | None:intergenic |
| CTAGTTTGAAGTTAAACAAT+GGG | 0.460833 | 7.3:+24001207 | MS.gene52303:CDS |
| ACAAAAGTGTAAAAGGTTGT+TGG | 0.463470 | 7.3:+24001105 | MS.gene52303:CDS |
| TTCAGGACCAAATACCCTAA+TGG | 0.464358 | 7.3:+24001151 | MS.gene52303:CDS |
| TTCGAGGAATTAACATCGGA+TGG | 0.489068 | 7.3:+24002196 | MS.gene52303:CDS |
| TCATGGATGAATTGTTCTCA+AGG | 0.497534 | 7.3:+24003212 | MS.gene52303:CDS |
| ATTAACATCGGATGGGATGA+TGG | 0.500277 | 7.3:+24002204 | MS.gene52303:CDS |
| TGAAGAAAATATGATATTGA+TGG | 0.500968 | 7.3:+24001076 | MS.gene52303:CDS |
| TGCTTCATAAATGCAACGCC+AGG | 0.504384 | 7.3:+24001344 | MS.gene52303:CDS |
| AAGCCAATGAAGACAATATG+AGG | 0.509078 | 7.3:-24001417 | None:intergenic |
| AAATATGCTTCATAAACTGA+TGG | 0.509785 | 7.3:-24002130 | None:intergenic |
| TGCATACCATCCTACTGTAA+AGG | 0.525692 | 7.3:+24002994 | MS.gene52303:CDS |
| GGAAGTAAGTCAACTGATTG+AGG | 0.531967 | 7.3:+24003015 | MS.gene52303:CDS |
| TTGTAGATAGCAAAATGAGA+GGG | 0.533482 | 7.3:+24003122 | MS.gene52303:CDS |
| CCAAACCCGGCTATGAAAAG+AGG | 0.536351 | 7.3:-24003181 | None:intergenic |
| AATCAACATTATCTTTCTCA+AGG | 0.538157 | 7.3:-24003096 | None:intergenic |
| AACTATTACTTCTGCTCAAG+GGG | 0.538660 | 7.3:+24002252 | MS.gene52303:CDS |
| TTTACAGTAGGATGGTATGC+AGG | 0.542301 | 7.3:-24002992 | None:intergenic |
| TTACTTCCTTTACAGTAGGA+TGG | 0.544872 | 7.3:-24003000 | None:intergenic |
| TTTGTAGGGTTTGGTCGAAG+AGG | 0.555209 | 7.3:+24002946 | MS.gene52303:intron |
| TGACTTACTTCCTTTACAGT+AGG | 0.561583 | 7.3:-24003004 | None:intergenic |
| CAACTATTACTTCTGCTCAA+GGG | 0.562417 | 7.3:+24002251 | MS.gene52303:CDS |
| ACTAGTTTGAAGTTAAACAA+TGG | 0.570514 | 7.3:+24001206 | MS.gene52303:CDS |
| TGCTCAAGGGGTAATTGGCA+TGG | 0.571786 | 7.3:+24002264 | MS.gene52303:CDS |
| ACTCATTGAGATAGAGACAT+TGG | 0.576407 | 7.3:+24003255 | MS.gene52303:CDS |
| ACAACTATTACTTCTGCTCA+AGG | 0.580895 | 7.3:+24002250 | MS.gene52303:CDS |
| GAATGAAGAACCACTAAACA+AGG | 0.582348 | 7.3:+24002078 | MS.gene52303:CDS |
| ATTCTTGGTCAAATCTTTCG+GGG | 0.587031 | 7.3:-24002059 | None:intergenic |
| GATGTTCAAGATATTAGAGA+TGG | 0.597112 | 7.3:-24001174 | None:intergenic |
| TATGCTTCATAAACTGATGG+AGG | 0.608561 | 7.3:-24002127 | None:intergenic |
| GTTGTAGATAGCAAAATGAG+AGG | 0.619009 | 7.3:+24003121 | MS.gene52303:CDS |
| TGGCATGGTACTCAACGAGA+TGG | 0.627761 | 7.3:+24002279 | MS.gene52303:CDS |
| AGTCAACTGATTGAGGCAGA+AGG | 0.629667 | 7.3:+24003022 | MS.gene52303:CDS |
| CGGGTTTGGAGAAAACATCA+TGG | 0.634728 | 7.3:+24003195 | MS.gene52303:CDS |
| TCGAGGAATTAACATCGGAT+GGG | 0.634883 | 7.3:+24002197 | MS.gene52303:CDS |
| TGTAGATAGCAAAATGAGAG+GGG | 0.646299 | 7.3:+24003123 | MS.gene52303:CDS |
| AATGAAGAACCACTAAACAA+GGG | 0.694091 | 7.3:+24002079 | MS.gene52303:CDS |
| ACGCTTCGAGGAATTAACAT+CGG | 0.708114 | 7.3:+24002192 | MS.gene52303:CDS |
| ACTCAACGAGATGGTCCAAG+AGG | 0.710119 | 7.3:+24002288 | MS.gene52303:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAAAAACAGTT+TGG | + | chr7.3:24002445-24002464 | MS.gene52303:intron | 10.0% |
| !!! | AACAATTAAAACTTTTAAAA+TGG | + | chr7.3:24003060-24003079 | MS.gene52303:CDS | 10.0% |
| !!! | ACAATTAAAACTTTTAAAAT+GGG | + | chr7.3:24003061-24003080 | MS.gene52303:CDS | 10.0% |
| !!! | TTAATAATTTTTTAAAGTCA+TGG | + | chr7.3:24002824-24002843 | MS.gene52303:intron | 10.0% |
| !!! | TTTTTTAAGTTTAATATTTG+CGG | + | chr7.3:24002751-24002770 | MS.gene52303:intron | 10.0% |
| !! | GCAAATATTAAACTTAAAAA+AGG | - | chr7.3:24002752-24002771 | None:intergenic | 15.0% |
| !!! | AAAAGTTTTAATTGTTTGAA+GGG | - | chr7.3:24003056-24003075 | None:intergenic | 15.0% |
| !!! | GGATAATTATTTTAAAAGTT+AGG | - | chr7.3:24002731-24002750 | None:intergenic | 15.0% |
| !!! | TAAAAGTTTTAATTGTTTGA+AGG | - | chr7.3:24003057-24003076 | None:intergenic | 15.0% |
| !! | AAAAAGTCGATGTAATTATT+TGG | - | chr7.3:24001392-24001411 | None:intergenic | 20.0% |
| !! | ATAACAAAAAATTGGGAATA+TGG | - | chr7.3:24002805-24002824 | None:intergenic | 20.0% |
| !! | CCAAAATAAAAAAATCTTAC+CGG | + | chr7.3:24002360-24002379 | MS.gene52303:intron | 20.0% |
| !! | TACAAGTTAAAATTGAGTTT+GGG | - | chr7.3:24001458-24001477 | None:intergenic | 20.0% |
| !! | TGAAGAAAATATGATATTGA+TGG | + | chr7.3:24001076-24001095 | MS.gene52303:CDS | 20.0% |
| !! | TTAATTCCTTTATGACATTT+AGG | + | chr7.3:24002036-24002055 | MS.gene52303:intron | 20.0% |
| !! | TTACAAGTTAAAATTGAGTT+TGG | - | chr7.3:24001459-24001478 | None:intergenic | 20.0% |
| !! | TTCTAATGAAAATTTGTACA+AGG | - | chr7.3:24001756-24001775 | None:intergenic | 20.0% |
| !!! | AAGATTCCTTATAATTTGTA+GGG | + | chr7.3:24002932-24002951 | MS.gene52303:intron | 20.0% |
| !!! | ACAAATGAAAATAGTATTGA+TGG | + | chr7.3:24001874-24001893 | MS.gene52303:intron | 20.0% |
| !!! | GAACACATAATTTTATCTAA+AGG | + | chr7.3:24001981-24002000 | MS.gene52303:intron | 20.0% |
| !!! | GTTGTTTCTAAAATTTGAAT+CGG | + | chr7.3:24002555-24002574 | MS.gene52303:intron | 20.0% |
| !!! | TAAAACTTTTAAAATGGGTT+GGG | + | chr7.3:24003066-24003085 | MS.gene52303:CDS | 20.0% |
| !!! | TAAGATTCCTTATAATTTGT+AGG | + | chr7.3:24002931-24002950 | MS.gene52303:intron | 20.0% |
| !!! | TTAAAACTTTTAAAATGGGT+TGG | + | chr7.3:24003065-24003084 | MS.gene52303:CDS | 20.0% |
| !!! | TTGAGATAAATTTGAAATAC+TGG | - | chr7.3:24001239-24001258 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCTATCATGTAAA+AGG | - | chr7.3:24002427-24002446 | None:intergenic | 20.0% |
| ! | AAATATGCTTCATAAACTGA+TGG | - | chr7.3:24002133-24002152 | None:intergenic | 25.0% |
| ! | AATCAACATTATCTTTCTCA+AGG | - | chr7.3:24003099-24003118 | None:intergenic | 25.0% |
| ! | ACAAGTTAAAATTGAGTTTG+GGG | - | chr7.3:24001457-24001476 | None:intergenic | 25.0% |
| ! | ATCAATATTTCACACACTTT+AGG | + | chr7.3:24002396-24002415 | MS.gene52303:intron | 25.0% |
| ! | CAAAAAAAAGGAGAAAATGT+TGG | + | chr7.3:24001317-24001336 | MS.gene52303:CDS | 25.0% |
| ! | CAACTTCTAGTATAAAAACA+AGG | - | chr7.3:24002539-24002558 | None:intergenic | 25.0% |
| ! | CTCAAAAAAATAACTGTTTC+TGG | + | chr7.3:24001797-24001816 | MS.gene52303:intron | 25.0% |
| ! | GATTTCTACCAACAAAAAAA+AGG | + | chr7.3:24001305-24001324 | MS.gene52303:CDS | 25.0% |
| ! | GTTTAGATTAGTGATAATCA+TGG | + | chr7.3:24001590-24001609 | MS.gene52303:intron | 25.0% |
| ! | TCTTCAAAAACATATGCAAT+AGG | + | chr7.3:24001947-24001966 | MS.gene52303:intron | 25.0% |
| ! | TTCCTATCATGTAAAAGAAA+GGG | - | chr7.3:24002628-24002647 | None:intergenic | 25.0% |
| ! | TTTCCTATCATGTAAAAGAA+AGG | - | chr7.3:24002629-24002648 | None:intergenic | 25.0% |
| !! | ACTAGTTTGAAGTTAAACAA+TGG | + | chr7.3:24001206-24001225 | MS.gene52303:CDS | 25.0% |
| !! | ATTTGTATGTCATTTCTGTT+AGG | - | chr7.3:24001860-24001879 | None:intergenic | 25.0% |
| !! | CTAGTTTGAAGTTAAACAAT+GGG | + | chr7.3:24001207-24001226 | MS.gene52303:CDS | 25.0% |
| !! | TAAATATTTCCCTTGTTTAG+TGG | - | chr7.3:24002091-24002110 | None:intergenic | 25.0% |
| !! | TTTGTATGTCATTTCTGTTA+GGG | - | chr7.3:24001859-24001878 | None:intergenic | 25.0% |
| !!! | CAGAAACAGTTATTTTTTTG+AGG | - | chr7.3:24001799-24001818 | None:intergenic | 25.0% |
| !!! | CATTTTCTCCTTTTTTTTGT+TGG | - | chr7.3:24001316-24001335 | None:intergenic | 25.0% |
| !!! | CCGGTAAGATTTTTTTATTT+TGG | - | chr7.3:24002363-24002382 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTTTGTTACAAGT+TGG | + | chr7.3:24001645-24001664 | MS.gene52303:intron | 25.0% |
| !!! | TTTTTTTGTTGGTAGAAATC+AGG | - | chr7.3:24001305-24001324 | None:intergenic | 25.0% |
| AATGAAGAACCACTAAACAA+GGG | + | chr7.3:24002079-24002098 | MS.gene52303:CDS | 30.0% | |
| ACCAAACCCTACAAATTATA+AGG | - | chr7.3:24002941-24002960 | None:intergenic | 30.0% | |
| ATGATGGCACTAACATTTAT+TGG | + | chr7.3:24002220-24002239 | MS.gene52303:CDS | 30.0% | |
| ATTCCTCATATTGTCTTCAT+TGG | + | chr7.3:24001414-24001433 | MS.gene52303:CDS | 30.0% | |
| GATGTTCAAGATATTAGAGA+TGG | - | chr7.3:24001177-24001196 | None:intergenic | 30.0% | |
| TATCATGTAAAAGAAAGGGA+AGG | - | chr7.3:24002624-24002643 | None:intergenic | 30.0% | |
| TCATTCTTGGTCAAATCTTT+CGG | - | chr7.3:24002064-24002083 | None:intergenic | 30.0% | |
| TTGTAGATAGCAAAATGAGA+GGG | + | chr7.3:24003122-24003141 | MS.gene52303:CDS | 30.0% | |
| ! | ACAAAAGTGTAAAAGGTTGT+TGG | + | chr7.3:24001105-24001124 | MS.gene52303:CDS | 30.0% |
| ! | ACAACCTTTTACACTTTTGT+TGG | - | chr7.3:24001105-24001124 | None:intergenic | 30.0% |
| ! | TCCTTATAATTTGTAGGGTT+TGG | + | chr7.3:24002937-24002956 | MS.gene52303:intron | 30.0% |
| ! | TTCCCTTTCTTTTACATGAT+AGG | + | chr7.3:24002623-24002642 | MS.gene52303:intron | 30.0% |
| !! | TTAAAGGTGTCAAACTAGTT+GGG | + | chr7.3:24002861-24002880 | MS.gene52303:intron | 30.0% |
| !!! | ACAAGTTGGTTAGAAGTTTT+AGG | + | chr7.3:24001659-24001678 | MS.gene52303:intron | 30.0% |
| !!! | ATTGATAGACATTTTGAGAC+CGG | - | chr7.3:24002382-24002401 | None:intergenic | 30.0% |
| AAAAACAGCTCTGTGATACT+TGG | - | chr7.3:24003158-24003177 | None:intergenic | 35.0% | |
| AACTATTACTTCTGCTCAAG+GGG | + | chr7.3:24002252-24002271 | MS.gene52303:CDS | 35.0% | |
| AAGCCAATGAAGACAATATG+AGG | - | chr7.3:24001420-24001439 | None:intergenic | 35.0% | |
| ACAACTATTACTTCTGCTCA+AGG | + | chr7.3:24002250-24002269 | MS.gene52303:CDS | 35.0% | |
| ACTCATTGAGATAGAGACAT+TGG | + | chr7.3:24003255-24003274 | MS.gene52303:CDS | 35.0% | |
| AGATATTAGAGATGGCCATT+AGG | - | chr7.3:24001169-24001188 | None:intergenic | 35.0% | |
| ATAGCACCAACAATACAAAC+AGG | - | chr7.3:24001900-24001919 | None:intergenic | 35.0% | |
| ATTCTTGGTCAAATCTTTCG+GGG | - | chr7.3:24002062-24002081 | None:intergenic | 35.0% | |
| CAAAACATCCGACAAGAATT+AGG | - | chr7.3:24002891-24002910 | None:intergenic | 35.0% | |
| CAACTATTACTTCTGCTCAA+GGG | + | chr7.3:24002251-24002270 | MS.gene52303:CDS | 35.0% | |
| CAGGAAAATGTTCCATCATT+TGG | + | chr7.3:24002494-24002513 | MS.gene52303:intron | 35.0% | |
| CATTCTTGGTCAAATCTTTC+GGG | - | chr7.3:24002063-24002082 | None:intergenic | 35.0% | |
| GAATGAAGAACCACTAAACA+AGG | + | chr7.3:24002078-24002097 | MS.gene52303:CDS | 35.0% | |
| GATATTAGAGATGGCCATTA+GGG | - | chr7.3:24001168-24001187 | None:intergenic | 35.0% | |
| GGCAAATGAGAGTTAGTTAA+AGG | + | chr7.3:24002845-24002864 | MS.gene52303:intron | 35.0% | |
| GTTGTAGATAGCAAAATGAG+AGG | + | chr7.3:24003121-24003140 | MS.gene52303:CDS | 35.0% | |
| GTTTAGTGGTTCTTCATTCT+TGG | - | chr7.3:24002077-24002096 | None:intergenic | 35.0% | |
| TATGCTTCATAAACTGATGG+AGG | - | chr7.3:24002130-24002149 | None:intergenic | 35.0% | |
| TCATGGATGAATTGTTCTCA+AGG | + | chr7.3:24003212-24003231 | MS.gene52303:CDS | 35.0% | |
| TGACTTACTTCCTTTACAGT+AGG | - | chr7.3:24003007-24003026 | None:intergenic | 35.0% | |
| TGTAGATAGCAAAATGAGAG+GGG | + | chr7.3:24003123-24003142 | MS.gene52303:CDS | 35.0% | |
| TTACTTCCTTTACAGTAGGA+TGG | - | chr7.3:24003003-24003022 | None:intergenic | 35.0% | |
| ! | GTGTCCAACAAAAGTGTAAA+AGG | + | chr7.3:24001098-24001117 | MS.gene52303:CDS | 35.0% |
| ! | TGTTGGAAAATAGCCGATTT+AGG | + | chr7.3:24001122-24001141 | MS.gene52303:CDS | 35.0% |
| ! | TTTGAACCTCTTTTCATAGC+CGG | + | chr7.3:24003175-24003194 | MS.gene52303:CDS | 35.0% |
| !! | CAAATGATGGAACATTTTCC+TGG | - | chr7.3:24002496-24002515 | None:intergenic | 35.0% |
| !! | CTTTTCTCTCTTGTTTCCAT+GGG | - | chr7.3:24001513-24001532 | None:intergenic | 35.0% |
| !! | GTTAAAGGTGTCAAACTAGT+TGG | + | chr7.3:24002860-24002879 | MS.gene52303:intron | 35.0% |
| !! | TCTTTTCTCTCTTGTTTCCA+TGG | - | chr7.3:24001514-24001533 | None:intergenic | 35.0% |
| AAAGGGAAGGTTTGACGTAA+CGG | - | chr7.3:24002611-24002630 | None:intergenic | 40.0% | |
| AAGCTTTCGCATAAAGATCC+AGG | + | chr7.3:24002475-24002494 | MS.gene52303:intron | 40.0% | |
| ACGCTTCGAGGAATTAACAT+CGG | + | chr7.3:24002192-24002211 | MS.gene52303:CDS | 40.0% | |
| AGCCTTCCATAAAAGTTTCC+TGG | - | chr7.3:24001365-24001384 | None:intergenic | 40.0% | |
| ATTAACATCGGATGGGATGA+TGG | + | chr7.3:24002204-24002223 | MS.gene52303:CDS | 40.0% | |
| GCGTACAATACACCAAATGA+TGG | - | chr7.3:24002509-24002528 | None:intergenic | 40.0% | |
| GGAAGTAAGTCAACTGATTG+AGG | + | chr7.3:24003015-24003034 | MS.gene52303:CDS | 40.0% | |
| GTTAAGAAACATGACACCCA+TGG | + | chr7.3:24001494-24001513 | MS.gene52303:intron | 40.0% | |
| TCCTGAAGAGCAACCTAAAT+CGG | - | chr7.3:24001138-24001157 | None:intergenic | 40.0% | |
| TCGAGGAATTAACATCGGAT+GGG | + | chr7.3:24002197-24002216 | MS.gene52303:CDS | 40.0% | |
| TGATGGCCTGTTTGTATTGT+TGG | + | chr7.3:24001891-24001910 | MS.gene52303:intron | 40.0% | |
| TGCATACCATCCTACTGTAA+AGG | + | chr7.3:24002994-24003013 | MS.gene52303:CDS | 40.0% | |
| TGGGATGTCCTAATTCTTGT+CGG | + | chr7.3:24002880-24002899 | MS.gene52303:intron | 40.0% | |
| TTCAGGACCAAATACCCTAA+TGG | + | chr7.3:24001151-24001170 | MS.gene52303:CDS | 40.0% | |
| TTCGAGGAATTAACATCGGA+TGG | + | chr7.3:24002196-24002215 | MS.gene52303:CDS | 40.0% | |
| TTTACAGTAGGATGGTATGC+AGG | - | chr7.3:24002995-24003014 | None:intergenic | 40.0% | |
| TTTGGTCGAAGAGGAGAAAT+TGG | + | chr7.3:24002955-24002974 | MS.gene52303:CDS | 40.0% | |
| ! | CATGATGTTTTCTCCAAACC+CGG | - | chr7.3:24003197-24003216 | None:intergenic | 40.0% |
| ! | TTGAACCTCTTTTCATAGCC+GGG | + | chr7.3:24003176-24003195 | MS.gene52303:CDS | 40.0% |
| !! | TTGTCTTCATTGGCTTTCTC+AGG | + | chr7.3:24001424-24001443 | MS.gene52303:CDS | 40.0% |
| !!! | TTTTCTAAAGTCACGCTTCG+AGG | + | chr7.3:24002180-24002199 | MS.gene52303:CDS | 40.0% |
| ACTTCTGCTCAAGGGGTAAT+TGG | + | chr7.3:24002259-24002278 | MS.gene52303:CDS | 45.0% | |
| AGTCAACTGATTGAGGCAGA+AGG | + | chr7.3:24003022-24003041 | MS.gene52303:CDS | 45.0% | |
| CGGGTTTGGAGAAAACATCA+TGG | + | chr7.3:24003195-24003214 | MS.gene52303:CDS | 45.0% | |
| TCGGGGCCTAAATGTCATAA+AGG | - | chr7.3:24002045-24002064 | None:intergenic | 45.0% | |
| TGCTTCATAAATGCAACGCC+AGG | + | chr7.3:24001344-24001363 | MS.gene52303:CDS | 45.0% | |
| ! | ATGGTCCAAGAGGTAATGGT+TGG | + | chr7.3:24002298-24002317 | MS.gene52303:intron | 45.0% |
| ! | CCAAGAGGTAATGGTTGGTA+GGG | + | chr7.3:24002303-24002322 | MS.gene52303:intron | 45.0% |
| ! | CGCCAGGAAACTTTTATGGA+AGG | + | chr7.3:24001360-24001379 | MS.gene52303:CDS | 45.0% |
| ! | GAGATGGCCATTAGGGTATT+TGG | - | chr7.3:24001161-24001180 | None:intergenic | 45.0% |
| ! | GCAACGCCAGGAAACTTTTA+TGG | + | chr7.3:24001356-24001375 | MS.gene52303:CDS | 45.0% |
| ! | TCCAAGAGGTAATGGTTGGT+AGG | + | chr7.3:24002302-24002321 | MS.gene52303:intron | 45.0% |
| ! | TTTGTAGGGTTTGGTCGAAG+AGG | + | chr7.3:24002946-24002965 | MS.gene52303:intron | 45.0% |
| !! | AATTATTAATAACAAAAAAT+TGG | - | chr7.3:24002813-24002832 | None:intergenic | 5.0% |
| !! | ATTATTAATAACAAAAAATT+GGG | - | chr7.3:24002812-24002831 | None:intergenic | 5.0% |
| ACTCAACGAGATGGTCCAAG+AGG | + | chr7.3:24002288-24002307 | MS.gene52303:CDS | 50.0% | |
| CCAAACCCGGCTATGAAAAG+AGG | - | chr7.3:24003184-24003203 | None:intergenic | 50.0% | |
| CCCTACCAACCATTACCTCT+TGG | - | chr7.3:24002306-24002325 | None:intergenic | 50.0% | |
| CGAGATGGTCCAAGAGGTAA+TGG | + | chr7.3:24002294-24002313 | MS.gene52303:intron | 50.0% | |
| TGCTCAAGGGGTAATTGGCA+TGG | + | chr7.3:24002264-24002283 | MS.gene52303:CDS | 50.0% | |
| TGGCATGGTACTCAACGAGA+TGG | + | chr7.3:24002279-24002298 | MS.gene52303:CDS | 50.0% | |
| ! | CCTCTTTTCATAGCCGGGTT+TGG | + | chr7.3:24003181-24003200 | MS.gene52303:CDS | 50.0% |
| !! | GCCGATTTAGGTTGCTCTTC+AGG | + | chr7.3:24001134-24001153 | MS.gene52303:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 24001056 | 24003318 | 24001056 | ID=MS.gene52303 |
| chr7.3 | mRNA | 24001056 | 24003318 | 24001056 | ID=MS.gene52303.t1;Parent=MS.gene52303 |
| chr7.3 | exon | 24001056 | 24001445 | 24001056 | ID=MS.gene52303.t1.exon1;Parent=MS.gene52303.t1 |
| chr7.3 | CDS | 24001056 | 24001445 | 24001056 | ID=cds.MS.gene52303.t1;Parent=MS.gene52303.t1 |
| chr7.3 | exon | 24002058 | 24002309 | 24002058 | ID=MS.gene52303.t1.exon2;Parent=MS.gene52303.t1 |
| chr7.3 | CDS | 24002058 | 24002309 | 24002058 | ID=cds.MS.gene52303.t1;Parent=MS.gene52303.t1 |
| chr7.3 | exon | 24002953 | 24003318 | 24002953 | ID=MS.gene52303.t1.exon3;Parent=MS.gene52303.t1 |
| chr7.3 | CDS | 24002953 | 24003318 | 24002953 | ID=cds.MS.gene52303.t1;Parent=MS.gene52303.t1 |
| Gene Sequence |
| Protein sequence |
