Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64697.t1 | XP_003612068.1 | 94.9 | 371 | 18 | 1 | 1 | 370 | 11 | 381 | 3.50E-204 | 720.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64697.t1 | Q9SPV4 | 59.0 | 371 | 136 | 6 | 1 | 369 | 1 | 357 | 2.7e-120 | 433.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64697.t1 | B7FIK3 | 94.9 | 371 | 18 | 1 | 1 | 370 | 11 | 381 | 2.5e-204 | 720.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene64697 | MS.gene024299 | PPI |
MS.gene64697 | MS.gene68203 | PPI |
MS.gene64697 | MS.gene68796 | PPI |
MS.gene64697 | MS.gene012028 | PPI |
MS.gene64697 | MS.gene000556 | PPI |
MS.gene64697 | MS.gene033750 | PPI |
MS.gene64697 | MS.gene87476 | PPI |
MS.gene64697 | MS.gene07908 | PPI |
MS.gene64697 | MS.gene99450 | PPI |
MS.gene64697 | MS.gene52320 | PPI |
MS.gene64697 | MS.gene010553 | PPI |
MS.gene64697 | MS.gene73369 | PPI |
MS.gene64697 | MS.gene25135 | PPI |
MS.gene64697 | MS.gene024301 | PPI |
MS.gene64697 | MS.gene037613 | PPI |
MS.gene64697 | MS.gene049577 | PPI |
MS.gene64697 | MS.gene73290 | PPI |
MS.gene64697 | MS.gene008450 | PPI |
MS.gene99450 | MS.gene64697 | PPI |
MS.gene64697 | MS.gene033734 | PPI |
MS.gene64697 | MS.gene024314 | PPI |
MS.gene033748 | MS.gene64697 | PPI |
MS.gene64697 | MS.gene59406 | PPI |
MS.gene64697 | MS.gene033748 | PPI |
MS.gene64697 | MS.gene033735 | PPI |
MS.gene64697 | MS.gene52303 | PPI |
MS.gene64697 | MS.gene014262 | PPI |
MS.gene64697 | MS.gene024315 | PPI |
MS.gene64697 | MS.gene76430 | PPI |
MS.gene64697 | MS.gene063148 | PPI |
MS.gene64697 | MS.gene02421 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64697.t1 | MTR_5g020940 | 94.879 | 371 | 18 | 1 | 1 | 370 | 11 | 381 | 0.0 | 737 |
MS.gene64697.t1 | MTR_8g077040 | 70.380 | 368 | 109 | 0 | 1 | 368 | 1 | 368 | 0.0 | 568 |
MS.gene64697.t1 | MTR_3g467270 | 66.396 | 369 | 123 | 1 | 1 | 369 | 1 | 368 | 0.0 | 540 |
MS.gene64697.t1 | MTR_4g018820 | 62.973 | 370 | 126 | 2 | 1 | 370 | 1 | 359 | 4.20e-178 | 499 |
MS.gene64697.t1 | MTR_8g076900 | 62.331 | 369 | 131 | 1 | 1 | 369 | 1 | 361 | 3.84e-176 | 494 |
MS.gene64697.t1 | MTR_6g056070 | 59.459 | 370 | 135 | 3 | 1 | 369 | 1 | 356 | 4.92e-162 | 458 |
MS.gene64697.t1 | MTR_8g020690 | 58.108 | 370 | 143 | 3 | 1 | 369 | 1 | 359 | 1.37e-161 | 457 |
MS.gene64697.t1 | MTR_8g020700 | 57.682 | 371 | 142 | 2 | 1 | 370 | 1 | 357 | 1.91e-161 | 456 |
MS.gene64697.t1 | MTR_8g076900 | 67.347 | 245 | 80 | 0 | 1 | 245 | 1 | 245 | 1.16e-123 | 357 |
MS.gene64697.t1 | MTR_8g020700 | 61.961 | 255 | 96 | 1 | 1 | 254 | 1 | 255 | 4.75e-118 | 343 |
MS.gene64697.t1 | MTR_3g117060 | 43.883 | 376 | 198 | 3 | 1 | 370 | 1 | 369 | 7.80e-112 | 331 |
MS.gene64697.t1 | MTR_3g467560 | 45.722 | 374 | 186 | 5 | 1 | 368 | 25 | 387 | 2.36e-106 | 318 |
MS.gene64697.t1 | MTR_1g022455 | 45.195 | 385 | 188 | 7 | 1 | 369 | 1 | 378 | 4.05e-104 | 311 |
MS.gene64697.t1 | MTR_1g022465 | 44.675 | 385 | 189 | 8 | 1 | 369 | 1 | 377 | 5.31e-103 | 309 |
MS.gene64697.t1 | MTR_5g046110 | 40.642 | 374 | 202 | 3 | 1 | 368 | 61 | 420 | 5.43e-98 | 297 |
MS.gene64697.t1 | MTR_7g084620 | 42.553 | 376 | 195 | 8 | 1 | 368 | 1 | 363 | 5.81e-95 | 288 |
MS.gene64697.t1 | MTR_7g084350 | 39.572 | 374 | 207 | 5 | 3 | 368 | 1 | 363 | 6.63e-90 | 275 |
MS.gene64697.t1 | MTR_8g077030 | 54.338 | 219 | 78 | 2 | 1 | 219 | 1 | 197 | 5.74e-76 | 244 |
MS.gene64697.t1 | MTR_7g084330 | 37.695 | 321 | 166 | 7 | 54 | 368 | 39 | 331 | 5.56e-63 | 204 |
MS.gene64697.t1 | MTR_3g054330 | 34.986 | 363 | 198 | 11 | 1 | 343 | 10 | 354 | 5.86e-57 | 190 |
MS.gene64697.t1 | MTR_5g093900 | 31.714 | 391 | 229 | 11 | 1 | 367 | 13 | 389 | 3.17e-52 | 178 |
MS.gene64697.t1 | MTR_3g052700 | 33.156 | 377 | 219 | 11 | 1 | 358 | 13 | 375 | 2.87e-51 | 176 |
MS.gene64697.t1 | MTR_1g108660 | 35.294 | 306 | 154 | 9 | 50 | 344 | 38 | 310 | 1.05e-49 | 170 |
MS.gene64697.t1 | MTR_6g015620 | 32.520 | 123 | 80 | 1 | 247 | 369 | 18 | 137 | 5.96e-16 | 74.3 |
MS.gene64697.t1 | MTR_7g084340 | 29.630 | 135 | 85 | 2 | 237 | 368 | 2 | 129 | 7.35e-15 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64697.t1 | AT3G11480 | 41.622 | 370 | 194 | 6 | 5 | 369 | 27 | 379 | 8.29e-98 | 295 |
MS.gene64697.t1 | AT4G36470 | 41.316 | 380 | 197 | 5 | 3 | 370 | 6 | 371 | 1.41e-95 | 290 |
MS.gene64697.t1 | AT5G66430 | 40.220 | 363 | 206 | 4 | 9 | 369 | 1 | 354 | 2.40e-95 | 288 |
MS.gene64697.t1 | AT5G04370 | 41.918 | 365 | 197 | 5 | 7 | 369 | 39 | 390 | 5.73e-95 | 289 |
MS.gene64697.t1 | AT5G04370 | 41.918 | 365 | 197 | 5 | 7 | 369 | 58 | 409 | 1.17e-94 | 289 |
MS.gene64697.t1 | AT5G04370 | 41.918 | 365 | 197 | 5 | 7 | 369 | 44 | 395 | 1.42e-94 | 288 |
MS.gene64697.t1 | AT1G19640 | 45.109 | 368 | 181 | 7 | 1 | 348 | 1 | 367 | 8.99e-94 | 286 |
MS.gene64697.t1 | AT5G38020 | 41.935 | 372 | 202 | 7 | 6 | 369 | 3 | 368 | 2.33e-91 | 279 |
MS.gene64697.t1 | AT5G04380 | 39.566 | 369 | 204 | 5 | 6 | 369 | 35 | 389 | 6.41e-91 | 278 |
MS.gene64697.t1 | AT3G21950 | 40.323 | 372 | 208 | 6 | 6 | 369 | 3 | 368 | 3.85e-90 | 276 |
MS.gene64697.t1 | AT5G04380 | 39.295 | 369 | 198 | 6 | 6 | 369 | 31 | 378 | 5.60e-87 | 268 |
MS.gene64697.t1 | AT2G14060 | 40.108 | 369 | 209 | 6 | 6 | 369 | 11 | 372 | 2.29e-86 | 266 |
MS.gene64697.t1 | AT3G21950 | 36.881 | 404 | 209 | 7 | 6 | 369 | 3 | 400 | 3.31e-83 | 259 |
MS.gene64697.t1 | AT5G04380 | 39.319 | 323 | 184 | 3 | 48 | 369 | 7 | 318 | 8.86e-83 | 255 |
MS.gene64697.t1 | AT5G38020 | 41.337 | 329 | 180 | 6 | 48 | 369 | 7 | 329 | 8.47e-81 | 250 |
MS.gene64697.t1 | AT1G68040 | 35.833 | 360 | 192 | 8 | 3 | 349 | 7 | 340 | 1.71e-64 | 209 |
MS.gene64697.t1 | AT2G14060 | 43.421 | 228 | 125 | 2 | 6 | 232 | 11 | 235 | 3.33e-64 | 205 |
MS.gene64697.t1 | AT5G55250 | 34.831 | 356 | 209 | 8 | 1 | 343 | 13 | 358 | 3.29e-59 | 196 |
MS.gene64697.t1 | AT5G55250 | 34.375 | 320 | 187 | 8 | 37 | 343 | 11 | 320 | 1.74e-50 | 172 |
MS.gene64697.t1 | AT5G38100 | 33.880 | 366 | 195 | 10 | 9 | 359 | 10 | 343 | 4.89e-50 | 172 |
MS.gene64697.t1 | AT5G37990 | 34.160 | 363 | 191 | 13 | 5 | 348 | 6 | 339 | 4.93e-50 | 172 |
MS.gene64697.t1 | AT5G37970 | 33.244 | 373 | 199 | 12 | 5 | 359 | 6 | 346 | 9.30e-50 | 171 |
MS.gene64697.t1 | AT5G38100 | 35.220 | 318 | 162 | 9 | 54 | 359 | 35 | 320 | 5.78e-48 | 166 |
MS.gene64697.t1 | AT1G15125 | 33.238 | 349 | 191 | 12 | 9 | 344 | 1 | 320 | 6.27e-48 | 166 |
MS.gene64697.t1 | AT4G26420 | 33.978 | 362 | 201 | 13 | 3 | 344 | 7 | 350 | 3.29e-47 | 165 |
MS.gene64697.t1 | AT5G56300 | 30.337 | 356 | 221 | 8 | 3 | 344 | 18 | 360 | 1.06e-46 | 164 |
MS.gene64697.t1 | AT5G38780 | 32.873 | 362 | 196 | 11 | 5 | 348 | 6 | 338 | 4.03e-46 | 161 |
MS.gene64697.t1 | AT5G38780 | 33.657 | 309 | 162 | 9 | 54 | 348 | 10 | 289 | 1.20e-43 | 154 |
MS.gene64697.t1 | AT3G44840 | 30.882 | 340 | 200 | 8 | 9 | 341 | 7 | 318 | 1.76e-40 | 146 |
MS.gene64697.t1 | AT4G26420 | 38.596 | 228 | 122 | 8 | 3 | 220 | 7 | 226 | 8.57e-38 | 137 |
MS.gene64697.t1 | AT1G66720 | 32.180 | 289 | 168 | 8 | 9 | 284 | 9 | 282 | 2.11e-37 | 138 |
MS.gene64697.t1 | AT3G44860 | 33.451 | 284 | 168 | 6 | 9 | 284 | 7 | 277 | 1.15e-36 | 136 |
MS.gene64697.t1 | AT1G66700 | 32.069 | 290 | 167 | 9 | 9 | 284 | 9 | 282 | 1.85e-36 | 135 |
MS.gene64697.t1 | AT3G44870 | 31.757 | 296 | 154 | 8 | 9 | 284 | 7 | 274 | 7.94e-36 | 134 |
MS.gene64697.t1 | AT4G26420 | 38.288 | 222 | 119 | 8 | 9 | 220 | 1 | 214 | 2.51e-35 | 130 |
MS.gene64697.t1 | AT1G66690 | 30.519 | 308 | 164 | 9 | 1 | 284 | 1 | 282 | 6.28e-34 | 129 |
MS.gene64697.t1 | AT5G38100 | 37.327 | 217 | 114 | 5 | 9 | 213 | 10 | 216 | 3.01e-32 | 122 |
MS.gene64697.t1 | AT5G38100 | 37.327 | 217 | 114 | 5 | 9 | 213 | 10 | 216 | 3.32e-32 | 122 |
MS.gene64697.t1 | AT1G15125 | 33.600 | 250 | 139 | 9 | 9 | 245 | 1 | 236 | 5.07e-32 | 121 |
MS.gene64697.t1 | AT1G66700 | 35.185 | 216 | 115 | 7 | 9 | 213 | 9 | 210 | 1.64e-30 | 117 |
Find 66 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAAGAATGTTGCTATATT+TGG | 0.110287 | 5.2:+12174244 | MS.gene64697:CDS |
GCAGATTTGGGTTGTTCTTC+TGG | 0.117703 | 5.2:+12160225 | MS.gene64697:CDS |
TCGTATGGTTCTGACAATTT+TGG | 0.188573 | 5.2:+12174197 | MS.gene64697:CDS |
AAGGCTAGGTATTGCAGATT+TGG | 0.245681 | 5.2:+12160212 | MS.gene64697:CDS |
TTCATGTAGACTTGGTATTC+TGG | 0.260814 | 5.2:-12160324 | None:intergenic |
TTATTATTCTCTACACCTTT+AGG | 0.268964 | 5.2:-12174054 | None:intergenic |
CAGATTTGGGTTGTTCTTCT+GGG | 0.282637 | 5.2:+12160226 | MS.gene64697:CDS |
GAGACTCGTGATTATGTTCT+TGG | 0.286361 | 5.2:-12160302 | None:intergenic |
TTTGCAGTAGAGGTTCTTTA+TGG | 0.293086 | 5.2:-12160178 | None:intergenic |
TAAAGGTGTAGAGAATAATA+AGG | 0.308607 | 5.2:+12174056 | MS.gene64697:CDS |
TTCAAATAACTCCTTACTTC+AGG | 0.317836 | 5.2:+12159929 | MS.gene64697:CDS |
TTTAGTTGATCGCATGTCTA+AGG | 0.320683 | 5.2:+12174971 | MS.gene64697:CDS |
ACTGCAAAACGTTCCCAAAA+AGG | 0.332500 | 5.2:+12160193 | MS.gene64697:CDS |
ATTGGAATGCTTATAATGAT+TGG | 0.336728 | 5.2:+12174796 | MS.gene64697:CDS |
TCCATCAGAAGTAAAATTAG+AGG | 0.338597 | 5.2:+12174722 | MS.gene64697:CDS |
CAAAGAATGTTGCTATATTT+GGG | 0.351384 | 5.2:+12174245 | MS.gene64697:CDS |
TAAGCGTTGAGCACGTTTGC+GGG | 0.354155 | 5.2:-12174105 | None:intergenic |
AGGCTAGGTATTGCAGATTT+GGG | 0.357011 | 5.2:+12160213 | MS.gene64697:CDS |
CTCCACATGAATGGAGGAAT+TGG | 0.364990 | 5.2:+12159894 | MS.gene64697:CDS |
GGACTTGCAGGGAATTATAA+TGG | 0.375871 | 5.2:+12174656 | MS.gene64697:intron |
GATATCACAAACAAAGTGTT+TGG | 0.381129 | 5.2:-12160249 | None:intergenic |
GGCTGTGGCTGAACCTTTGT+TGG | 0.389884 | 5.2:+12174893 | MS.gene64697:CDS |
CCTTTGTTGGTCAGTCACTT+TGG | 0.420436 | 5.2:+12174906 | MS.gene64697:CDS |
TTATCTAAACCACTCATTGA+TGG | 0.421483 | 5.2:+12174843 | MS.gene64697:CDS |
TGCACTTAATGACATGGTCT+TGG | 0.426789 | 5.2:+12174281 | MS.gene64697:CDS |
AATTATAATGGAGGAGCAAA+TGG | 0.437256 | 5.2:+12174668 | MS.gene64697:CDS |
TATCTAAACCACTCATTGAT+GGG | 0.456081 | 5.2:+12174844 | MS.gene64697:CDS |
ATTCCTCTTACAGCCTTCAA+TGG | 0.459080 | 5.2:+12160511 | MS.gene64697:CDS |
GTGATTAATTAGGTTCCTAA+AGG | 0.473857 | 5.2:+12174039 | MS.gene64697:intron |
GTCATTCACTATTGATCGTA+TGG | 0.475509 | 5.2:+12174758 | MS.gene64697:CDS |
GTCTACATGAATGATCTTCA+AGG | 0.480272 | 5.2:+12160336 | MS.gene64697:CDS |
GTAAGCGTTGAGCACGTTTG+CGG | 0.483149 | 5.2:-12174106 | None:intergenic |
CTCCAATTCCTCCATTCATG+TGG | 0.487182 | 5.2:-12159896 | None:intergenic |
AAAGGTGTAGAGAATAATAA+GGG | 0.504329 | 5.2:+12174057 | MS.gene64697:CDS |
ACTTAATGACATGGTCTTGG+AGG | 0.509131 | 5.2:+12174284 | MS.gene64697:CDS |
AAACTAAATGATGAAGTTGA+AGG | 0.511623 | 5.2:+12160405 | MS.gene64697:CDS |
TTACCTGTGAGAGCCATTGA+AGG | 0.518107 | 5.2:-12160524 | None:intergenic |
AATCTCTTTGAAATTGCTCA+TGG | 0.518585 | 5.2:-12174128 | None:intergenic |
GATGAAGTTGAAGGTGGGAT+TGG | 0.523981 | 5.2:+12160414 | MS.gene64697:CDS |
GTGCAGAAGAACTTGTTGAC+GGG | 0.527202 | 5.2:+12174172 | MS.gene64697:CDS |
TGCCGTTGCACTTAATGACA+TGG | 0.530148 | 5.2:+12174275 | MS.gene64697:CDS |
GAACAAGTACTCCACATGAA+TGG | 0.537606 | 5.2:+12159885 | MS.gene64697:CDS |
CTAAATGATGAAGTTGAAGG+TGG | 0.544774 | 5.2:+12160408 | MS.gene64697:CDS |
GAGAGAAACAAGGATGAAAG+TGG | 0.553371 | 5.2:+12159863 | None:intergenic |
CAGCCTTCAATGGCTCTCAC+AGG | 0.553437 | 5.2:+12160521 | MS.gene64697:CDS |
GAGCCATTGAAGGCTGTAAG+AGG | 0.561556 | 5.2:-12160514 | None:intergenic |
GACCATGTCATTAAGTGCAA+CGG | 0.569570 | 5.2:-12174277 | None:intergenic |
CACAAAATGCATGAGGGCTG+TGG | 0.572332 | 5.2:+12174878 | MS.gene64697:CDS |
GAAGATCATTCATGTAGACT+TGG | 0.574260 | 5.2:-12160332 | None:intergenic |
TAAATGATGAAGTTGAAGGT+GGG | 0.578488 | 5.2:+12160409 | MS.gene64697:CDS |
TGGAGGTAACAAAAGTACAT+TGG | 0.585827 | 5.2:+12174778 | MS.gene64697:CDS |
CCAAAGTGACTGACCAACAA+AGG | 0.591313 | 5.2:-12174906 | None:intergenic |
CGTGCAGAAGAACTTGTTGA+CGG | 0.591341 | 5.2:+12174171 | MS.gene64697:CDS |
AAGCGTTGAGCACGTTTGCG+GGG | 0.596174 | 5.2:-12174104 | None:intergenic |
TCTACATGAATGATCTTCAA+GGG | 0.597339 | 5.2:+12160337 | MS.gene64697:CDS |
ATCTAAACCACTCATTGATG+GGG | 0.600535 | 5.2:+12174845 | MS.gene64697:CDS |
TAATAAGGGTAACATTTACA+TGG | 0.606370 | 5.2:+12174071 | MS.gene64697:CDS |
TGCAGAAGAACTTGTTGACG+GGG | 0.630200 | 5.2:+12174173 | MS.gene64697:CDS |
ACAATGTCACAAAATGCATG+AGG | 0.638571 | 5.2:+12174871 | MS.gene64697:CDS |
TTGTATGCCCCATCAATGAG+TGG | 0.641457 | 5.2:-12174852 | None:intergenic |
CAAGTACTCCACATGAATGG+AGG | 0.643109 | 5.2:+12159888 | MS.gene64697:CDS |
CAATGTCACAAAATGCATGA+GGG | 0.658939 | 5.2:+12174872 | MS.gene64697:CDS |
ATTCACTATTGATCGTATGG+AGG | 0.679848 | 5.2:+12174761 | MS.gene64697:CDS |
CTTGCAGGGAATTATAATGG+AGG | 0.686854 | 5.2:+12174659 | MS.gene64697:intron |
GATGGAGATGGTGTGTACTG+AGG | 0.725953 | 5.2:-12174705 | None:intergenic |
GCAGAAGAACTTGTTGACGG+GGG | 0.729596 | 5.2:+12174174 | MS.gene64697:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 12159876 | 12175043 | 12159876 | ID=MS.gene64697 |
chr5.2 | mRNA | 12159876 | 12175043 | 12159876 | ID=MS.gene64697.t1;Parent=MS.gene64697 |
chr5.2 | exon | 12159876 | 12159950 | 12159876 | ID=MS.gene64697.t1.exon1;Parent=MS.gene64697.t1 |
chr5.2 | CDS | 12159876 | 12159950 | 12159876 | ID=cds.MS.gene64697.t1;Parent=MS.gene64697.t1 |
chr5.2 | exon | 12160138 | 12160542 | 12160138 | ID=MS.gene64697.t1.exon2;Parent=MS.gene64697.t1 |
chr5.2 | CDS | 12160138 | 12160542 | 12160138 | ID=cds.MS.gene64697.t1;Parent=MS.gene64697.t1 |
chr5.2 | exon | 12174051 | 12174305 | 12174051 | ID=MS.gene64697.t1.exon3;Parent=MS.gene64697.t1 |
chr5.2 | CDS | 12174051 | 12174305 | 12174051 | ID=cds.MS.gene64697.t1;Parent=MS.gene64697.t1 |
chr5.2 | exon | 12174666 | 12175043 | 12174666 | ID=MS.gene64697.t1.exon4;Parent=MS.gene64697.t1 |
chr5.2 | CDS | 12174666 | 12175043 | 12174666 | ID=cds.MS.gene64697.t1;Parent=MS.gene64697.t1 |
Gene Sequence |
Protein sequence |