Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024301.t1 | XP_003624529.1 | 92.6 | 338 | 25 | 0 | 1 | 338 | 28 | 365 | 1.90E-180 | 641.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024301.t1 | Q9AVK0 | 41.3 | 344 | 188 | 6 | 2 | 338 | 31 | 367 | 2.8e-68 | 260.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024301.t1 | G7KY96 | 92.6 | 338 | 25 | 0 | 1 | 338 | 28 | 365 | 1.3e-180 | 641.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024301 | MS.gene033735 | PPI |
| MS.gene59406 | MS.gene024301 | PPI |
| MS.gene024301 | MS.gene52303 | PPI |
| MS.gene024301 | MS.gene014262 | PPI |
| MS.gene024301 | MS.gene76430 | PPI |
| MS.gene024301 | MS.gene008450 | PPI |
| MS.gene024301 | MS.gene033734 | PPI |
| MS.gene024301 | MS.gene063148 | PPI |
| MS.gene024301 | MS.gene59406 | PPI |
| MS.gene52320 | MS.gene024301 | PPI |
| MS.gene024301 | MS.gene73290 | PPI |
| MS.gene024301 | MS.gene68796 | PPI |
| MS.gene024301 | MS.gene024315 | PPI |
| MS.gene024301 | MS.gene012028 | PPI |
| MS.gene024301 | MS.gene000556 | PPI |
| MS.gene024301 | MS.gene033750 | PPI |
| MS.gene024301 | MS.gene87476 | PPI |
| MS.gene024301 | MS.gene02421 | PPI |
| MS.gene024301 | MS.gene07908 | PPI |
| MS.gene024301 | MS.gene024299 | PPI |
| MS.gene024301 | MS.gene68203 | PPI |
| MS.gene024301 | MS.gene52320 | PPI |
| MS.gene64697 | MS.gene024301 | PPI |
| MS.gene024301 | MS.gene73369 | PPI |
| MS.gene99450 | MS.gene024301 | PPI |
| MS.gene024301 | MS.gene25135 | PPI |
| MS.gene033748 | MS.gene024301 | PPI |
| MS.gene024301 | MS.gene037613 | PPI |
| MS.gene024301 | MS.gene049577 | PPI |
| MS.gene024301 | MS.gene010553 | PPI |
| MS.gene024301 | MS.gene024314 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024301.t1 | MTR_7g084350 | 92.604 | 338 | 25 | 0 | 1 | 338 | 28 | 365 | 0.0 | 654 |
| MS.gene024301.t1 | MTR_3g467560 | 71.217 | 337 | 93 | 2 | 1 | 336 | 54 | 387 | 3.11e-178 | 499 |
| MS.gene024301.t1 | MTR_7g084620 | 70.968 | 341 | 91 | 5 | 1 | 338 | 30 | 365 | 2.85e-176 | 493 |
| MS.gene024301.t1 | MTR_7g084330 | 67.155 | 341 | 89 | 6 | 1 | 338 | 13 | 333 | 1.87e-158 | 447 |
| MS.gene024301.t1 | MTR_3g117060 | 51.026 | 341 | 159 | 5 | 1 | 336 | 30 | 367 | 2.58e-115 | 338 |
| MS.gene024301.t1 | MTR_6g056070 | 40.625 | 320 | 170 | 4 | 24 | 338 | 53 | 357 | 3.77e-80 | 248 |
| MS.gene024301.t1 | MTR_8g076900 | 38.938 | 339 | 192 | 5 | 3 | 336 | 32 | 360 | 2.87e-79 | 246 |
| MS.gene024301.t1 | MTR_5g020940 | 38.953 | 344 | 194 | 6 | 3 | 336 | 42 | 379 | 1.16e-78 | 245 |
| MS.gene024301.t1 | MTR_4g018820 | 37.758 | 339 | 193 | 5 | 3 | 336 | 32 | 357 | 1.01e-77 | 242 |
| MS.gene024301.t1 | MTR_1g022465 | 42.331 | 326 | 167 | 6 | 26 | 336 | 57 | 376 | 7.79e-77 | 241 |
| MS.gene024301.t1 | MTR_8g077040 | 36.812 | 345 | 203 | 5 | 3 | 338 | 32 | 370 | 2.21e-76 | 239 |
| MS.gene024301.t1 | MTR_1g022455 | 41.358 | 324 | 174 | 5 | 26 | 336 | 57 | 377 | 1.83e-75 | 237 |
| MS.gene024301.t1 | MTR_3g467270 | 35.345 | 348 | 204 | 5 | 3 | 338 | 31 | 369 | 6.70e-75 | 235 |
| MS.gene024301.t1 | MTR_8g020700 | 39.688 | 320 | 171 | 4 | 3 | 316 | 32 | 335 | 2.12e-72 | 228 |
| MS.gene024301.t1 | MTR_5g046110 | 37.427 | 342 | 195 | 5 | 2 | 336 | 91 | 420 | 1.73e-67 | 218 |
| MS.gene024301.t1 | MTR_8g020690 | 35.294 | 340 | 201 | 4 | 3 | 336 | 32 | 358 | 5.51e-66 | 212 |
| MS.gene024301.t1 | MTR_7g084340 | 80.833 | 120 | 23 | 0 | 218 | 337 | 11 | 130 | 2.08e-64 | 200 |
| MS.gene024301.t1 | MTR_8g076900 | 42.727 | 220 | 115 | 3 | 3 | 217 | 32 | 245 | 1.18e-53 | 177 |
| MS.gene024301.t1 | MTR_3g052700 | 36.000 | 300 | 175 | 6 | 26 | 314 | 71 | 364 | 5.52e-53 | 179 |
| MS.gene024301.t1 | MTR_8g020700 | 42.534 | 221 | 115 | 3 | 3 | 217 | 32 | 246 | 4.73e-52 | 173 |
| MS.gene024301.t1 | MTR_5g093900 | 34.056 | 323 | 194 | 7 | 26 | 335 | 73 | 389 | 1.53e-51 | 176 |
| MS.gene024301.t1 | MTR_3g054330 | 36.093 | 302 | 173 | 7 | 26 | 314 | 63 | 357 | 2.25e-50 | 172 |
| MS.gene024301.t1 | MTR_1g108660 | 31.646 | 316 | 178 | 7 | 26 | 331 | 42 | 329 | 1.07e-49 | 169 |
| MS.gene024301.t1 | MTR_8g077030 | 29.582 | 311 | 129 | 9 | 6 | 314 | 34 | 256 | 1.24e-28 | 116 |
| MS.gene024301.t1 | MTR_6g015620 | 43.307 | 127 | 67 | 2 | 213 | 336 | 12 | 136 | 5.45e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024301.t1 | AT1G19640 | 38.483 | 356 | 197 | 5 | 4 | 337 | 33 | 388 | 1.32e-73 | 233 |
| MS.gene024301.t1 | AT5G66430 | 40.615 | 325 | 173 | 7 | 2 | 318 | 23 | 335 | 3.20e-72 | 228 |
| MS.gene024301.t1 | AT3G11480 | 37.941 | 340 | 190 | 4 | 3 | 336 | 54 | 378 | 8.32e-70 | 223 |
| MS.gene024301.t1 | AT5G38020 | 39.275 | 331 | 175 | 7 | 3 | 318 | 29 | 348 | 1.30e-68 | 219 |
| MS.gene024301.t1 | AT5G38020 | 39.688 | 320 | 167 | 7 | 14 | 318 | 1 | 309 | 1.52e-67 | 215 |
| MS.gene024301.t1 | AT5G04370 | 39.296 | 341 | 187 | 8 | 2 | 336 | 63 | 389 | 5.88e-65 | 211 |
| MS.gene024301.t1 | AT5G04370 | 39.296 | 341 | 187 | 8 | 2 | 336 | 82 | 408 | 6.68e-65 | 211 |
| MS.gene024301.t1 | AT5G04370 | 39.296 | 341 | 187 | 8 | 2 | 336 | 68 | 394 | 9.53e-65 | 210 |
| MS.gene024301.t1 | AT3G21950 | 39.490 | 314 | 164 | 6 | 14 | 312 | 40 | 342 | 2.82e-64 | 208 |
| MS.gene024301.t1 | AT4G36470 | 36.957 | 322 | 176 | 8 | 9 | 316 | 41 | 349 | 1.79e-62 | 203 |
| MS.gene024301.t1 | AT5G04380 | 36.111 | 324 | 189 | 4 | 6 | 323 | 64 | 375 | 2.06e-61 | 201 |
| MS.gene024301.t1 | AT5G04380 | 36.392 | 316 | 183 | 4 | 14 | 323 | 1 | 304 | 3.49e-61 | 198 |
| MS.gene024301.t1 | AT3G21950 | 35.838 | 346 | 164 | 7 | 14 | 312 | 40 | 374 | 1.24e-57 | 192 |
| MS.gene024301.t1 | AT5G04380 | 35.185 | 324 | 185 | 5 | 6 | 323 | 60 | 364 | 3.17e-56 | 187 |
| MS.gene024301.t1 | AT2G14060 | 34.146 | 328 | 200 | 6 | 2 | 322 | 36 | 354 | 4.54e-55 | 184 |
| MS.gene024301.t1 | AT1G15125 | 32.258 | 341 | 193 | 11 | 10 | 337 | 33 | 348 | 3.48e-49 | 168 |
| MS.gene024301.t1 | AT5G55250 | 32.602 | 319 | 195 | 7 | 6 | 311 | 9 | 320 | 4.68e-48 | 165 |
| MS.gene024301.t1 | AT5G55250 | 32.602 | 319 | 195 | 7 | 6 | 311 | 47 | 358 | 1.55e-47 | 165 |
| MS.gene024301.t1 | AT1G68040 | 30.655 | 336 | 194 | 11 | 10 | 333 | 49 | 357 | 7.60e-43 | 152 |
| MS.gene024301.t1 | AT5G37970 | 31.046 | 306 | 177 | 6 | 25 | 319 | 60 | 342 | 1.67e-42 | 151 |
| MS.gene024301.t1 | AT5G37990 | 30.392 | 306 | 179 | 6 | 25 | 319 | 60 | 342 | 2.19e-42 | 150 |
| MS.gene024301.t1 | AT5G38100 | 31.307 | 329 | 186 | 10 | 2 | 317 | 13 | 314 | 3.33e-41 | 147 |
| MS.gene024301.t1 | AT5G38780 | 30.659 | 349 | 198 | 10 | 2 | 332 | 36 | 358 | 4.77e-41 | 147 |
| MS.gene024301.t1 | AT5G38780 | 31.307 | 329 | 183 | 9 | 22 | 332 | 6 | 309 | 6.47e-41 | 145 |
| MS.gene024301.t1 | AT5G38100 | 31.307 | 329 | 186 | 10 | 2 | 317 | 36 | 337 | 8.47e-41 | 146 |
| MS.gene024301.t1 | AT2G14060 | 39.487 | 195 | 110 | 2 | 2 | 196 | 36 | 222 | 6.02e-40 | 141 |
| MS.gene024301.t1 | AT4G26420 | 28.528 | 326 | 208 | 7 | 21 | 331 | 54 | 369 | 2.48e-35 | 132 |
| MS.gene024301.t1 | AT5G56300 | 28.267 | 329 | 202 | 10 | 25 | 333 | 68 | 382 | 7.24e-35 | 131 |
| MS.gene024301.t1 | AT1G66720 | 27.987 | 318 | 189 | 7 | 2 | 309 | 35 | 322 | 1.91e-33 | 127 |
| MS.gene024301.t1 | AT3G44870 | 29.592 | 294 | 166 | 8 | 26 | 309 | 53 | 315 | 3.57e-33 | 126 |
| MS.gene024301.t1 | AT1G66690 | 29.801 | 302 | 161 | 8 | 26 | 309 | 55 | 323 | 2.11e-31 | 121 |
| MS.gene024301.t1 | AT1G15125 | 33.937 | 221 | 122 | 8 | 10 | 220 | 33 | 239 | 1.09e-30 | 117 |
| MS.gene024301.t1 | AT1G66700 | 27.797 | 295 | 176 | 6 | 26 | 309 | 55 | 323 | 1.63e-30 | 119 |
| MS.gene024301.t1 | AT3G44860 | 32.365 | 241 | 137 | 6 | 26 | 256 | 53 | 277 | 1.84e-30 | 119 |
| MS.gene024301.t1 | AT3G44840 | 28.179 | 291 | 177 | 7 | 26 | 309 | 53 | 318 | 4.56e-30 | 117 |
| MS.gene024301.t1 | AT5G38100 | 30.396 | 227 | 140 | 7 | 2 | 224 | 36 | 248 | 2.02e-22 | 94.7 |
| MS.gene024301.t1 | AT5G38100 | 30.396 | 227 | 140 | 7 | 2 | 224 | 36 | 248 | 2.18e-22 | 94.7 |
| MS.gene024301.t1 | AT4G26420 | 30.857 | 175 | 109 | 4 | 25 | 195 | 58 | 224 | 7.96e-22 | 93.6 |
| MS.gene024301.t1 | AT4G26420 | 30.857 | 175 | 109 | 4 | 25 | 195 | 46 | 212 | 9.70e-22 | 93.2 |
| MS.gene024301.t1 | AT1G66700 | 32.941 | 170 | 95 | 4 | 26 | 190 | 55 | 210 | 2.06e-20 | 89.4 |
Find 55 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCTTGGTTGAATATTT+TGG | 0.117266 | 7.1:+20683699 | None:intergenic |
| GATGAGTGGTTCTGCTTTCT+TGG | 0.159579 | 7.1:+20683686 | None:intergenic |
| ATAGATCATTGAGGTAAATT+TGG | 0.201496 | 7.1:+20684685 | None:intergenic |
| TTTAGTTGAAGAAGCAAAAT+TGG | 0.215168 | 7.1:-20682436 | MS.gene024301:CDS |
| CTCTTTCTTGTTGAATGCTT+TGG | 0.242144 | 7.1:+20684616 | None:intergenic |
| GTGATGGTACTAACTTTAAT+TGG | 0.251253 | 7.1:-20683540 | MS.gene024301:CDS |
| TTCAGGACCAAATGCACTTA+TGG | 0.271528 | 7.1:-20684775 | MS.gene024301:CDS |
| TGTTGGAAAGTAGTTGATTT+AGG | 0.276313 | 7.1:-20684804 | MS.gene024301:CDS |
| GTTGATTTAGGTTGTTCTTC+AGG | 0.296247 | 7.1:-20684792 | MS.gene024301:CDS |
| GATCAACAATATCTTCTTGC+AGG | 0.314712 | 7.1:+20682295 | None:intergenic |
| GCAACACCAGGGAGCTTCTA+TGG | 0.337472 | 7.1:-20684564 | MS.gene024301:CDS |
| TCTATATCATCCTACTATAA+AGG | 0.359099 | 7.1:-20682397 | MS.gene024301:CDS |
| GAGACAACCATAAGTGCATT+TGG | 0.372630 | 7.1:+20684768 | None:intergenic |
| GAGGTTTATGTTGAGCAATT+TGG | 0.385082 | 7.1:-20683618 | MS.gene024301:CDS |
| TGTTTCACTTCCTTTATAGT+AGG | 0.392703 | 7.1:+20682387 | None:intergenic |
| GAATTTGAAAATGATGATAT+CGG | 0.417336 | 7.1:-20684844 | MS.gene024301:CDS |
| TTTCTTGTTGAATGCTTTGG+TGG | 0.417731 | 7.1:+20684619 | None:intergenic |
| ATTCTTCCTATTGTGTCCAT+TGG | 0.424057 | 7.1:-20684506 | MS.gene024301:CDS |
| TGATGGTACTAACTTTAATT+GGG | 0.439302 | 7.1:-20683539 | MS.gene024301:CDS |
| CGACCTTCTTTAAGGACACT+TGG | 0.439820 | 7.1:+20682086 | None:intergenic |
| AAACAAGTGATCGAGGTAGA+AGG | 0.446801 | 7.1:-20682369 | MS.gene024301:CDS |
| TGATAGCCAATGGACACAAT+AGG | 0.448336 | 7.1:+20684500 | None:intergenic |
| TTAATTGGGAGAGAAAATAA+TGG | 0.449128 | 7.1:-20683525 | MS.gene024301:CDS |
| TTGAGGTAAATTTGGAATGC+TGG | 0.456080 | 7.1:+20684693 | None:intergenic |
| TGAATGCTTTGGTGGAAATC+AGG | 0.457567 | 7.1:+20684627 | None:intergenic |
| GCATGTATGAAGCATGTTCC+AGG | 0.460803 | 7.1:+20684585 | None:intergenic |
| AAAACAAGCTCTGTGATACT+TGG | 0.480684 | 7.1:+20682236 | None:intergenic |
| GAAAGCAGAACCACTCATCA+AGG | 0.487187 | 7.1:-20683682 | MS.gene024301:CDS |
| GAGCCCTCCATCGGTGTATG+AGG | 0.490938 | 7.1:-20683637 | MS.gene024301:CDS |
| TTTATAGTAGGATGATATAG+AGG | 0.491881 | 7.1:+20682399 | None:intergenic |
| CAAGAAAGAGGAGAGAATCC+TGG | 0.507141 | 7.1:-20684603 | MS.gene024301:CDS |
| ATTAGCTTAAGCTTAAACCA+TGG | 0.513101 | 7.1:-20684720 | MS.gene024301:CDS |
| TCATGGATGAATTATTCTCA+AGG | 0.523360 | 7.1:-20682179 | MS.gene024301:CDS |
| TGCTTCATACATGCAACACC+AGG | 0.523693 | 7.1:-20684576 | MS.gene024301:CDS |
| CAAAGCATTCAACAAGAAAG+AGG | 0.526195 | 7.1:-20684615 | MS.gene024301:CDS |
| TTAGCTTAAGCTTAAACCAT+GGG | 0.541808 | 7.1:-20684719 | MS.gene024301:CDS |
| TAAGTTTGGTGAAAATATCA+TGG | 0.547936 | 7.1:-20682196 | MS.gene024301:CDS |
| TTTGGAATGCTGGTAGCCCA+TGG | 0.567597 | 7.1:+20684703 | None:intergenic |
| ACGATCGGAAGAACTAGCAT+TGG | 0.573764 | 7.1:-20683568 | MS.gene024301:CDS |
| TAAACCTCATACACCGATGG+AGG | 0.585410 | 7.1:+20683633 | None:intergenic |
| AGTCTTCCATAGAAGCTCCC+TGG | 0.600448 | 7.1:+20684558 | None:intergenic |
| ATCAGGTAGTAACTTCAAGA+TGG | 0.603639 | 7.1:+20684644 | None:intergenic |
| AACTTACTTGTGATAGCCAA+TGG | 0.609905 | 7.1:+20684490 | None:intergenic |
| GTCGTTGATAGCAAGATGAG+AGG | 0.620263 | 7.1:-20682270 | MS.gene024301:CDS |
| ACTAGCATTGGATGGTGTGA+TGG | 0.625972 | 7.1:-20683556 | MS.gene024301:CDS |
| AACAAGAATGAGCCCTCCAT+CGG | 0.627728 | 7.1:-20683646 | MS.gene024301:CDS |
| TAGATATTACCCTTGATGAG+TGG | 0.628626 | 7.1:+20683672 | None:intergenic |
| TCGGAAGAACTAGCATTGGA+TGG | 0.630987 | 7.1:-20683564 | MS.gene024301:CDS |
| AAAGCAGAACCACTCATCAA+GGG | 0.632811 | 7.1:-20683681 | MS.gene024301:CDS |
| GGAAGTGAAACAAGTGATCG+AGG | 0.635174 | 7.1:-20682376 | MS.gene024301:CDS |
| AAACCTCATACACCGATGGA+GGG | 0.643833 | 7.1:+20683634 | None:intergenic |
| AGGCATGGTACTCAACGAGA+TGG | 0.648975 | 7.1:-20683478 | MS.gene024301:CDS |
| ACATAAACCTCATACACCGA+TGG | 0.652143 | 7.1:+20683630 | None:intergenic |
| ACTCAACGAGATGGTCCAAG+AGG | 0.710119 | 7.1:-20683469 | MS.gene024301:intron |
| GCTTCATACATGCAACACCA+GGG | 0.712541 | 7.1:-20684575 | MS.gene024301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCTATGTAATTAT+TGG | + | chr7.1:20682438-20682457 | None:intergenic | 10.0% |
| !! | AAAAAATCTATGTAATTATT+GGG | + | chr7.1:20682437-20682456 | None:intergenic | 10.0% |
| !! | TCAAATAGATAAATAATAAT+AGG | + | chr7.1:20682943-20682962 | None:intergenic | 10.0% |
| !! | TTATTATTTATCTATTTGAT+AGG | - | chr7.1:20682944-20682963 | MS.gene024301:intron | 10.0% |
| !!! | AGTTATATAGTTTTTTTTTT+AGG | + | chr7.1:20683885-20683904 | None:intergenic | 10.0% |
| !!! | GTTATATAGTTTTTTTTTTA+GGG | + | chr7.1:20683884-20683903 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAAAGATTTTA+GGG | + | chr7.1:20683849-20683868 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGAAAGATTTT+AGG | + | chr7.1:20683850-20683869 | None:intergenic | 10.0% |
| !! | AATAATAATACACAAAAAGA+AGG | + | chr7.1:20682832-20682851 | None:intergenic | 15.0% |
| !! | ATATTAACAAAGATTCAAAT+TGG | + | chr7.1:20684395-20684414 | None:intergenic | 15.0% |
| !! | ATTGATGAATTAAAACTATT+TGG | + | chr7.1:20682509-20682528 | None:intergenic | 15.0% |
| !! | TGGTAAAAAAAAAAATATTC+AGG | + | chr7.1:20682606-20682625 | None:intergenic | 15.0% |
| !! | TTCAAAAGTAAAAATATTGT+AGG | + | chr7.1:20683784-20683803 | None:intergenic | 15.0% |
| !!! | ACAAAACATAATTTTTATTC+CGG | + | chr7.1:20684466-20684485 | None:intergenic | 15.0% |
| !!! | CTAATAAAATTCTTATTTGT+TGG | + | chr7.1:20682626-20682645 | None:intergenic | 15.0% |
| !!! | TTATTTATCTTTTTTGATGA+TGG | - | chr7.1:20682847-20682866 | MS.gene024301:intron | 15.0% |
| !! | AAAAATAATTTGGGAAGTTT+AGG | - | chr7.1:20684053-20684072 | MS.gene024301:intron | 20.0% |
| !! | AAATTGAGAACACATAATTA+AGG | + | chr7.1:20683015-20683034 | None:intergenic | 20.0% |
| !! | AACACAATATTGAAAAAATC+TGG | + | chr7.1:20684851-20684870 | None:intergenic | 20.0% |
| !! | AGACAAATGTACTATAAAAA+GGG | - | chr7.1:20682802-20682821 | MS.gene024301:intron | 20.0% |
| !! | CGATAATATTGTTGTATTTA+CGG | - | chr7.1:20682779-20682798 | MS.gene024301:intron | 20.0% |
| !! | GAATTTGAAAATGATGATAT+CGG | - | chr7.1:20682121-20682140 | MS.gene024301:CDS | 20.0% |
| !! | GTTGAAGTCAAAAATAATTT+GGG | - | chr7.1:20684044-20684063 | MS.gene024301:intron | 20.0% |
| !! | TCTATTGATCATCATATTAT+TGG | - | chr7.1:20684428-20684447 | MS.gene024301:intron | 20.0% |
| !! | TGAATTAAAACTATTTGGTT+TGG | + | chr7.1:20682504-20682523 | None:intergenic | 20.0% |
| !! | TGTTGAAGTCAAAAATAATT+TGG | - | chr7.1:20684043-20684062 | MS.gene024301:intron | 20.0% |
| !!! | AAATTTGGTGATCTTAAAAA+AGG | - | chr7.1:20682740-20682759 | MS.gene024301:intron | 20.0% |
| !!! | ACATTGAAGACTTTTAAAAT+CGG | - | chr7.1:20684635-20684654 | MS.gene024301:CDS | 20.0% |
| !!! | ATATCACCATATATTTTCAT+TGG | + | chr7.1:20684002-20684021 | None:intergenic | 20.0% |
| !!! | GATCTTGTTTTATTTGTTAA+TGG | - | chr7.1:20683229-20683248 | MS.gene024301:intron | 20.0% |
| !!! | TTAATAAACTTTTCCTTTGT+GGG | - | chr7.1:20684225-20684244 | MS.gene024301:intron | 20.0% |
| !!! | TTTAATAAACTTTTCCTTTG+TGG | - | chr7.1:20684224-20684243 | MS.gene024301:intron | 20.0% |
| ! | AAAGATATTAATTACTCCAC+TGG | - | chr7.1:20683949-20683968 | MS.gene024301:intron | 25.0% |
| ! | AATCAATCATATTTACCTCT+TGG | + | chr7.1:20683514-20683533 | None:intergenic | 25.0% |
| ! | ATAGATCATTGAGGTAAATT+TGG | + | chr7.1:20682283-20682302 | None:intergenic | 25.0% |
| ! | ATCAATTAAGTTAAGACTTG+TGG | - | chr7.1:20683721-20683740 | MS.gene024301:intron | 25.0% |
| ! | ATGAACTTAACTTAGTTGAT+AGG | + | chr7.1:20682915-20682934 | None:intergenic | 25.0% |
| ! | ATTTGATATCCATTTCATCT+TGG | - | chr7.1:20684137-20684156 | MS.gene024301:intron | 25.0% |
| ! | GAGACAAATGTACTATAAAA+AGG | - | chr7.1:20682801-20682820 | MS.gene024301:intron | 25.0% |
| ! | TCTATATCATCCTACTATAA+AGG | - | chr7.1:20684568-20684587 | MS.gene024301:CDS | 25.0% |
| ! | TGATGGTACTAACTTTAATT+GGG | - | chr7.1:20683426-20683445 | MS.gene024301:intron | 25.0% |
| ! | TTAATTGGGAGAGAAAATAA+TGG | - | chr7.1:20683440-20683459 | MS.gene024301:intron | 25.0% |
| ! | TTGCATCCAATGAAAATATA+TGG | - | chr7.1:20683993-20684012 | MS.gene024301:intron | 25.0% |
| ! | TTTAGTTGAAGAAGCAAAAT+TGG | - | chr7.1:20684529-20684548 | MS.gene024301:CDS | 25.0% |
| ! | TTTATAGTAGGATGATATAG+AGG | + | chr7.1:20684569-20684588 | None:intergenic | 25.0% |
| ! | TTTGTTAATGGTGGTATATT+AGG | - | chr7.1:20683241-20683260 | MS.gene024301:intron | 25.0% |
| !! | ACACAACTTTTAATAGTTGT+TGG | - | chr7.1:20682144-20682163 | MS.gene024301:CDS | 25.0% |
| !! | CATTTTCATATAGATCATTG+AGG | + | chr7.1:20682292-20682311 | None:intergenic | 25.0% |
| !! | TAAGTTTGGTGAAAATATCA+TGG | - | chr7.1:20684769-20684788 | MS.gene024301:CDS | 25.0% |
| !! | TAATAAACTTTTCCTTTGTG+GGG | - | chr7.1:20684226-20684245 | MS.gene024301:intron | 25.0% |
| !! | TCTCTTTTAATAGCTAAGTT+TGG | - | chr7.1:20684755-20684774 | MS.gene024301:CDS | 25.0% |
| !!! | CTTGTTTTATTTGTTAATGG+TGG | - | chr7.1:20683232-20683251 | MS.gene024301:intron | 25.0% |
| AAATATTGTAGGAAGCGATT+AGG | + | chr7.1:20683773-20683792 | None:intergenic | 30.0% | |
| AAATGACTTTATACTACCAG+TGG | + | chr7.1:20683968-20683987 | None:intergenic | 30.0% | |
| AAGAGGAAACTCAATCATTT+AGG | - | chr7.1:20683189-20683208 | MS.gene024301:intron | 30.0% | |
| AAGTTGCAATTACAAGATAG+AGG | + | chr7.1:20684183-20684202 | None:intergenic | 30.0% | |
| AATTACAAGATAGAGGAAAG+AGG | + | chr7.1:20684176-20684195 | None:intergenic | 30.0% | |
| ATAATACATGCAAAGGTTTG+GGG | + | chr7.1:20682884-20682903 | None:intergenic | 30.0% | |
| CAAAGATTCAAATTGGCAAA+AGG | + | chr7.1:20684388-20684407 | None:intergenic | 30.0% | |
| CATAATACATGCAAAGGTTT+GGG | + | chr7.1:20682885-20682904 | None:intergenic | 30.0% | |
| GATATCAAATTAGCGAAAGA+TGG | + | chr7.1:20684127-20684146 | None:intergenic | 30.0% | |
| GTGATGGTACTAACTTTAAT+TGG | - | chr7.1:20683425-20683444 | MS.gene024301:intron | 30.0% | |
| TCATGGATGAATTATTCTCA+AGG | - | chr7.1:20684786-20684805 | MS.gene024301:CDS | 30.0% | |
| TGTTTCACTTCCTTTATAGT+AGG | + | chr7.1:20684581-20684600 | None:intergenic | 30.0% | |
| TTAGCTTAAGCTTAAACCAT+GGG | - | chr7.1:20682246-20682265 | MS.gene024301:CDS | 30.0% | |
| TTATTGGATGATCTAGATAC+CGG | - | chr7.1:20684444-20684463 | MS.gene024301:intron | 30.0% | |
| TTCTATAAAATTCCCCTGTA+GGG | - | chr7.1:20684506-20684525 | MS.gene024301:CDS | 30.0% | |
| TTCTCAATACACACAAAAAG+CGG | + | chr7.1:20682990-20683009 | None:intergenic | 30.0% | |
| TTTCTATAAAATTCCCCTGT+AGG | - | chr7.1:20684505-20684524 | MS.gene024301:CDS | 30.0% | |
| ! | ACAGGGGAATTTTATAGAAA+AGG | + | chr7.1:20684505-20684524 | None:intergenic | 30.0% |
| ! | ATTAGCTTAAGCTTAAACCA+TGG | - | chr7.1:20682245-20682264 | MS.gene024301:CDS | 30.0% |
| ! | GCTTTCTTGGTTGAATATTT+TGG | + | chr7.1:20683269-20683288 | None:intergenic | 30.0% |
| ! | TGGTGAAATTACTTCTTTTG+AGG | - | chr7.1:20683460-20683479 | MS.gene024301:intron | 30.0% |
| ! | TGTTGGAAAGTAGTTGATTT+AGG | - | chr7.1:20682161-20682180 | MS.gene024301:CDS | 30.0% |
| !!! | ATTACTTCTTTTGAGGTACT+AGG | - | chr7.1:20683467-20683486 | MS.gene024301:intron | 30.0% |
| !!! | GAAGACTTTTAAAATCGGTT+GGG | - | chr7.1:20684640-20684659 | MS.gene024301:CDS | 30.0% |
| !!! | TATCTTTTTTGATGATGGTC+TGG | - | chr7.1:20682852-20682871 | MS.gene024301:intron | 30.0% |
| !!! | TGAAGACTTTTAAAATCGGT+TGG | - | chr7.1:20684639-20684658 | MS.gene024301:CDS | 30.0% |
| AAAACAAGCTCTGTGATACT+TGG | + | chr7.1:20684732-20684751 | None:intergenic | 35.0% | |
| AACTTACTTGTGATAGCCAA+TGG | + | chr7.1:20682478-20682497 | None:intergenic | 35.0% | |
| ACAGTGCATAATACATGCAA+AGG | + | chr7.1:20682891-20682910 | None:intergenic | 35.0% | |
| ATCAGGTAGTAACTTCAAGA+TGG | + | chr7.1:20682324-20682343 | None:intergenic | 35.0% | |
| ATCCATTTCATCTTGGATTG+AGG | - | chr7.1:20684144-20684163 | MS.gene024301:intron | 35.0% | |
| ATCCTCAATCCAAGATGAAA+TGG | + | chr7.1:20684149-20684168 | None:intergenic | 35.0% | |
| ATTAGAAACTAGCGTCAAGA+CGG | - | chr7.1:20682641-20682660 | MS.gene024301:intron | 35.0% | |
| ATTCTTCCTATTGTGTCCAT+TGG | - | chr7.1:20682459-20682478 | MS.gene024301:intron | 35.0% | |
| ATTGAGTTTCCTCTTCAACA+TGG | + | chr7.1:20683184-20683203 | None:intergenic | 35.0% | |
| CACATATTTCATACACGATG+TGG | - | chr7.1:20684329-20684348 | MS.gene024301:intron | 35.0% | |
| CTCTTTCTTGTTGAATGCTT+TGG | + | chr7.1:20682352-20682371 | None:intergenic | 35.0% | |
| GAAGTTTAGGTCATTTGTAG+GGG | - | chr7.1:20684066-20684085 | MS.gene024301:intron | 35.0% | |
| GAGGTTTATGTTGAGCAATT+TGG | - | chr7.1:20683347-20683366 | MS.gene024301:intron | 35.0% | |
| GATCAACAATATCTTCTTGC+AGG | + | chr7.1:20684673-20684692 | None:intergenic | 35.0% | |
| GCATAATACATGCAAAGGTT+TGG | + | chr7.1:20682886-20682905 | None:intergenic | 35.0% | |
| GGAAGTTTAGGTCATTTGTA+GGG | - | chr7.1:20684065-20684084 | MS.gene024301:intron | 35.0% | |
| TAGATATTACCCTTGATGAG+TGG | + | chr7.1:20683296-20683315 | None:intergenic | 35.0% | |
| TCGAAAAACTTGAACTACTG+TGG | - | chr7.1:20682531-20682550 | MS.gene024301:intron | 35.0% | |
| TCTCAATACACACAAAAAGC+GGG | + | chr7.1:20682989-20683008 | None:intergenic | 35.0% | |
| TTCTTCAACTAAACCCTACA+GGG | + | chr7.1:20684522-20684541 | None:intergenic | 35.0% | |
| TTGAGTTTCCTCTTCAACAT+GGG | + | chr7.1:20683183-20683202 | None:intergenic | 35.0% | |
| TTTCTTGTTGAATGCTTTGG+TGG | + | chr7.1:20682349-20682368 | None:intergenic | 35.0% | |
| ! | CAAAGCATTCAACAAGAAAG+AGG | - | chr7.1:20682350-20682369 | MS.gene024301:CDS | 35.0% |
| ! | GAATTTTCTACAGTCACGAT+CGG | - | chr7.1:20683382-20683401 | MS.gene024301:intron | 35.0% |
| ! | TTGAGGTAAATTTGGAATGC+TGG | + | chr7.1:20682275-20682294 | None:intergenic | 35.0% |
| !! | GTTGATTTAGGTTGTTCTTC+AGG | - | chr7.1:20682173-20682192 | MS.gene024301:CDS | 35.0% |
| !!! | CTAGTTTTTTTTCCCCACAA+AGG | + | chr7.1:20684241-20684260 | None:intergenic | 35.0% |
| AAAACCAAACGACGTGATCT+AGG | + | chr7.1:20683684-20683703 | None:intergenic | 40.0% | |
| AAACAAGTGATCGAGGTAGA+AGG | - | chr7.1:20684596-20684615 | MS.gene024301:CDS | 40.0% | |
| AAAGCAGAACCACTCATCAA+GGG | - | chr7.1:20683284-20683303 | MS.gene024301:intron | 40.0% | |
| ACACATACAAGTGTAGAGGT+TGG | - | chr7.1:20683650-20683669 | MS.gene024301:CDS | 40.0% | |
| ACATAAACCTCATACACCGA+TGG | + | chr7.1:20683338-20683357 | None:intergenic | 40.0% | |
| ACATACAAGTGTAGAGGTTG+GGG | - | chr7.1:20683652-20683671 | MS.gene024301:CDS | 40.0% | |
| ACTCACACATACAAGTGTAG+AGG | - | chr7.1:20683646-20683665 | MS.gene024301:CDS | 40.0% | |
| CACATACAAGTGTAGAGGTT+GGG | - | chr7.1:20683651-20683670 | MS.gene024301:CDS | 40.0% | |
| CTCAATACACACAAAAAGCG+GGG | + | chr7.1:20682988-20683007 | None:intergenic | 40.0% | |
| CTTCTTCAACTAAACCCTAC+AGG | + | chr7.1:20684523-20684542 | None:intergenic | 40.0% | |
| GAGACAACCATAAGTGCATT+TGG | + | chr7.1:20682200-20682219 | None:intergenic | 40.0% | |
| GGGAAGTTTAGGTCATTTGT+AGG | - | chr7.1:20684064-20684083 | MS.gene024301:intron | 40.0% | |
| GTGGGGAAAAAAAACTAGCT+AGG | - | chr7.1:20684243-20684262 | MS.gene024301:intron | 40.0% | |
| TCAATACACACAAAAAGCGG+GGG | + | chr7.1:20682987-20683006 | None:intergenic | 40.0% | |
| TCTTCAACTAAACCCTACAG+GGG | + | chr7.1:20684521-20684540 | None:intergenic | 40.0% | |
| TGAATGCTTTGGTGGAAATC+AGG | + | chr7.1:20682341-20682360 | None:intergenic | 40.0% | |
| TGATAGCCAATGGACACAAT+AGG | + | chr7.1:20682468-20682487 | None:intergenic | 40.0% | |
| TTCAGGACCAAATGCACTTA+TGG | - | chr7.1:20682190-20682209 | MS.gene024301:CDS | 40.0% | |
| TTTAGGTCATTTGTAGGGGT+AGG | - | chr7.1:20684070-20684089 | MS.gene024301:intron | 40.0% | |
| !!! | TTCTTTTGAGGTACTAGGCA+TGG | - | chr7.1:20683472-20683491 | MS.gene024301:CDS | 40.0% |
| AAACCTCATACACCGATGGA+GGG | + | chr7.1:20683334-20683353 | None:intergenic | 45.0% | |
| AACAAGAATGAGCCCTCCAT+CGG | - | chr7.1:20683319-20683338 | MS.gene024301:intron | 45.0% | |
| AATACACACAAAAAGCGGGG+GGG | + | chr7.1:20682985-20683004 | None:intergenic | 45.0% | |
| ACGATCGGAAGAACTAGCAT+TGG | - | chr7.1:20683397-20683416 | MS.gene024301:intron | 45.0% | |
| CAAACCTAGATCACGTCGTT+TGG | - | chr7.1:20683677-20683696 | MS.gene024301:CDS | 45.0% | |
| CAAGAAAGAGGAGAGAATCC+TGG | - | chr7.1:20682362-20682381 | MS.gene024301:CDS | 45.0% | |
| CAATACACACAAAAAGCGGG+GGG | + | chr7.1:20682986-20683005 | None:intergenic | 45.0% | |
| GAAAGCAGAACCACTCATCA+AGG | - | chr7.1:20683283-20683302 | MS.gene024301:intron | 45.0% | |
| GCATGTATGAAGCATGTTCC+AGG | + | chr7.1:20682383-20682402 | None:intergenic | 45.0% | |
| GCTTCATACATGCAACACCA+GGG | - | chr7.1:20682390-20682409 | MS.gene024301:CDS | 45.0% | |
| GGAAGTGAAACAAGTGATCG+AGG | - | chr7.1:20684589-20684608 | MS.gene024301:CDS | 45.0% | |
| TAAACCTCATACACCGATGG+AGG | + | chr7.1:20683335-20683354 | None:intergenic | 45.0% | |
| TGCTTCATACATGCAACACC+AGG | - | chr7.1:20682389-20682408 | MS.gene024301:CDS | 45.0% | |
| TGTAGGGGTAGGAGTTCAAT+TGG | - | chr7.1:20684081-20684100 | MS.gene024301:intron | 45.0% | |
| TTTCCTCTTCAACATGGGAG+TGG | + | chr7.1:20683178-20683197 | None:intergenic | 45.0% | |
| ! | ACTAGCATTGGATGGTGTGA+TGG | - | chr7.1:20683409-20683428 | MS.gene024301:intron | 45.0% |
| ! | GATGAGTGGTTCTGCTTTCT+TGG | + | chr7.1:20683282-20683301 | None:intergenic | 45.0% |
| ! | TCGGAAGAACTAGCATTGGA+TGG | - | chr7.1:20683401-20683420 | MS.gene024301:intron | 45.0% |
| !! | GTCGTTGATAGCAAGATGAG+AGG | - | chr7.1:20684695-20684714 | MS.gene024301:CDS | 45.0% |
| !! | ATTATTGAAATAAAAAAATT+TGG | - | chr7.1:20682725-20682744 | MS.gene024301:intron | 5.0% |
| ACTCAACGAGATGGTCCAAG+AGG | - | chr7.1:20683496-20683515 | MS.gene024301:CDS | 50.0% | |
| AGGCATGGTACTCAACGAGA+TGG | - | chr7.1:20683487-20683506 | MS.gene024301:CDS | 50.0% | |
| AGTCTTCCATAGAAGCTCCC+TGG | + | chr7.1:20682410-20682429 | None:intergenic | 50.0% | |
| ATACACACAAAAAGCGGGGG+GGG | + | chr7.1:20682984-20683003 | None:intergenic | 50.0% | |
| TGACCACTCCCATGTTGAAG+AGG | - | chr7.1:20683172-20683191 | MS.gene024301:intron | 50.0% | |
| ! | TTTGGAATGCTGGTAGCCCA+TGG | + | chr7.1:20682265-20682284 | None:intergenic | 50.0% |
| GCAACACCAGGGAGCTTCTA+TGG | - | chr7.1:20682401-20682420 | MS.gene024301:CDS | 55.0% | |
| TACACACAAAAAGCGGGGGG+GGG | + | chr7.1:20682983-20683002 | None:intergenic | 55.0% | |
| ACACACAAAAAGCGGGGGGG+GGG | + | chr7.1:20682982-20683001 | None:intergenic | 60.0% | |
| GAGCCCTCCATCGGTGTATG+AGG | - | chr7.1:20683328-20683347 | MS.gene024301:intron | 60.0% | |
| ACACAAAAAGCGGGGGGGGG+GGG | + | chr7.1:20682980-20682999 | None:intergenic | 65.0% | |
| CACACAAAAAGCGGGGGGGG+GGG | + | chr7.1:20682981-20683000 | None:intergenic | 65.0% | |
| ACAAAAAGCGGGGGGGGGGG+GGG | + | chr7.1:20682978-20682997 | None:intergenic | 70.0% | |
| CACAAAAAGCGGGGGGGGGG+GGG | + | chr7.1:20682979-20682998 | None:intergenic | 70.0% | |
| AAAAAGCGGGGGGGGGGGGG+GGG | + | chr7.1:20682976-20682995 | None:intergenic | 75.0% | |
| CAAAAAGCGGGGGGGGGGGG+GGG | + | chr7.1:20682977-20682996 | None:intergenic | 75.0% | |
| ! | AAAAGCGGGGGGGGGGGGGG+GGG | + | chr7.1:20682975-20682994 | None:intergenic | 80.0% |
| ! | AGCGGGGGGGGGGGGGGGGG+CGG | + | chr7.1:20682972-20682991 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 20682095 | 20684892 | 20682095 | ID=MS.gene024301 |
| chr7.1 | mRNA | 20682095 | 20684892 | 20682095 | ID=MS.gene024301.t1;Parent=MS.gene024301 |
| chr7.1 | exon | 20684497 | 20684892 | 20684497 | ID=MS.gene024301.t1.exon1;Parent=MS.gene024301.t1 |
| chr7.1 | CDS | 20684497 | 20684892 | 20684497 | ID=cds.MS.gene024301.t1;Parent=MS.gene024301.t1 |
| chr7.1 | exon | 20683470 | 20683724 | 20683470 | ID=MS.gene024301.t1.exon2;Parent=MS.gene024301.t1 |
| chr7.1 | CDS | 20683470 | 20683724 | 20683470 | ID=cds.MS.gene024301.t1;Parent=MS.gene024301.t1 |
| chr7.1 | exon | 20682095 | 20682460 | 20682095 | ID=MS.gene024301.t1.exon3;Parent=MS.gene024301.t1 |
| chr7.1 | CDS | 20682095 | 20682460 | 20682095 | ID=cds.MS.gene024301.t1;Parent=MS.gene024301.t1 |
| Gene Sequence |
| Protein sequence |
