Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68796.t1 | XP_003603961.1 | 95.4 | 369 | 16 | 1 | 1 | 368 | 1 | 369 | 2.60E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68796.t1 | Q8H0G0 | 46.3 | 380 | 189 | 6 | 1 | 367 | 1 | 378 | 4.3e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68796.t1 | G7J763 | 95.4 | 369 | 16 | 1 | 1 | 368 | 1 | 369 | 1.8e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051044 | MS.gene68796 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene68796 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene052703 | MS.gene68796 | 0.812833 | 3.48E-51 | -1.69E-46 |
| MS.gene055251 | MS.gene68796 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene055942 | MS.gene68796 | 0.808311 | 3.30E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene68796 | 0.81131 | 7.46E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene68796 | 0.830416 | 2.97E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68796 | MS.gene024299 | PPI |
| MS.gene68796 | MS.gene68203 | PPI |
| MS.gene64697 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene73369 | PPI |
| MS.gene99450 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene25135 | PPI |
| MS.gene033748 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene037613 | PPI |
| MS.gene68796 | MS.gene049577 | PPI |
| MS.gene024301 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene010553 | PPI |
| MS.gene68796 | MS.gene024314 | PPI |
| MS.gene024315 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene033735 | PPI |
| MS.gene68796 | MS.gene52303 | PPI |
| MS.gene59406 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene014262 | PPI |
| MS.gene68796 | MS.gene76430 | PPI |
| MS.gene68796 | MS.gene008450 | PPI |
| MS.gene68796 | MS.gene033734 | PPI |
| MS.gene68796 | MS.gene063148 | PPI |
| MS.gene52320 | MS.gene68796 | PPI |
| MS.gene68796 | MS.gene73290 | PPI |
| MS.gene68796 | MS.gene024315 | PPI |
| MS.gene68796 | MS.gene012028 | PPI |
| MS.gene68796 | MS.gene000556 | PPI |
| MS.gene68796 | MS.gene033750 | PPI |
| MS.gene68796 | MS.gene87476 | PPI |
| MS.gene68796 | MS.gene02421 | PPI |
| MS.gene68796 | MS.gene07908 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68796.t1 | MTR_3g117060 | 95.393 | 369 | 16 | 1 | 1 | 368 | 1 | 369 | 0.0 | 733 |
| MS.gene68796.t1 | MTR_3g467560 | 53.678 | 367 | 165 | 3 | 1 | 366 | 25 | 387 | 9.50e-139 | 400 |
| MS.gene68796.t1 | MTR_7g084620 | 52.033 | 369 | 168 | 5 | 1 | 366 | 1 | 363 | 1.90e-131 | 380 |
| MS.gene68796.t1 | MTR_7g084350 | 50.681 | 367 | 174 | 4 | 3 | 366 | 1 | 363 | 1.68e-129 | 375 |
| MS.gene68796.t1 | MTR_8g077040 | 44.562 | 377 | 189 | 4 | 1 | 366 | 1 | 368 | 2.20e-114 | 337 |
| MS.gene68796.t1 | MTR_4g018820 | 46.257 | 374 | 180 | 4 | 1 | 368 | 1 | 359 | 8.76e-114 | 335 |
| MS.gene68796.t1 | MTR_5g020940 | 45.213 | 376 | 193 | 4 | 1 | 368 | 11 | 381 | 2.20e-112 | 333 |
| MS.gene68796.t1 | MTR_3g467270 | 45.600 | 375 | 189 | 6 | 1 | 367 | 1 | 368 | 4.18e-112 | 332 |
| MS.gene68796.t1 | MTR_8g076900 | 43.817 | 372 | 195 | 3 | 1 | 368 | 1 | 362 | 2.99e-108 | 322 |
| MS.gene68796.t1 | MTR_8g020690 | 42.933 | 375 | 192 | 4 | 1 | 368 | 1 | 360 | 7.25e-105 | 313 |
| MS.gene68796.t1 | MTR_6g056070 | 43.280 | 372 | 190 | 5 | 1 | 367 | 1 | 356 | 4.96e-104 | 310 |
| MS.gene68796.t1 | MTR_8g020700 | 41.223 | 376 | 194 | 4 | 1 | 368 | 1 | 357 | 4.96e-99 | 298 |
| MS.gene68796.t1 | MTR_7g084330 | 45.821 | 347 | 160 | 7 | 25 | 366 | 8 | 331 | 1.18e-96 | 291 |
| MS.gene68796.t1 | MTR_5g046110 | 42.486 | 346 | 179 | 4 | 1 | 339 | 61 | 393 | 2.53e-95 | 290 |
| MS.gene68796.t1 | MTR_1g022465 | 43.455 | 382 | 196 | 7 | 1 | 367 | 1 | 377 | 3.50e-92 | 281 |
| MS.gene68796.t1 | MTR_1g022455 | 42.147 | 382 | 202 | 7 | 1 | 367 | 1 | 378 | 1.75e-88 | 271 |
| MS.gene68796.t1 | MTR_8g076900 | 51.200 | 250 | 113 | 2 | 1 | 246 | 1 | 245 | 5.60e-86 | 261 |
| MS.gene68796.t1 | MTR_6g015620 | 96.748 | 123 | 4 | 0 | 246 | 368 | 16 | 138 | 7.08e-80 | 241 |
| MS.gene68796.t1 | MTR_8g020700 | 45.769 | 260 | 131 | 2 | 1 | 255 | 1 | 255 | 6.03e-77 | 238 |
| MS.gene68796.t1 | MTR_3g054330 | 35.714 | 378 | 219 | 11 | 1 | 365 | 10 | 376 | 6.13e-63 | 206 |
| MS.gene68796.t1 | MTR_8g077030 | 36.735 | 343 | 127 | 6 | 1 | 342 | 1 | 254 | 2.65e-59 | 200 |
| MS.gene68796.t1 | MTR_5g093900 | 32.812 | 384 | 232 | 9 | 1 | 365 | 13 | 389 | 1.12e-57 | 192 |
| MS.gene68796.t1 | MTR_3g052700 | 33.246 | 382 | 231 | 10 | 1 | 365 | 13 | 387 | 1.63e-57 | 192 |
| MS.gene68796.t1 | MTR_1g108660 | 32.378 | 349 | 195 | 8 | 26 | 361 | 9 | 329 | 1.18e-52 | 178 |
| MS.gene68796.t1 | MTR_7g084340 | 44.628 | 121 | 62 | 2 | 248 | 366 | 12 | 129 | 8.92e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68796.t1 | AT5G38020 | 44.663 | 356 | 178 | 6 | 6 | 350 | 3 | 350 | 5.03e-95 | 288 |
| MS.gene68796.t1 | AT3G11480 | 42.133 | 375 | 189 | 6 | 2 | 367 | 24 | 379 | 1.05e-91 | 280 |
| MS.gene68796.t1 | AT5G66430 | 40.984 | 366 | 197 | 6 | 9 | 367 | 1 | 354 | 1.42e-90 | 276 |
| MS.gene68796.t1 | AT4G36470 | 42.407 | 349 | 177 | 6 | 3 | 339 | 6 | 342 | 1.43e-90 | 276 |
| MS.gene68796.t1 | AT3G21950 | 42.980 | 349 | 178 | 7 | 6 | 342 | 3 | 342 | 1.23e-87 | 269 |
| MS.gene68796.t1 | AT5G38020 | 46.178 | 314 | 149 | 6 | 48 | 350 | 7 | 311 | 2.08e-85 | 262 |
| MS.gene68796.t1 | AT1G19640 | 40.769 | 390 | 204 | 8 | 1 | 366 | 1 | 387 | 1.45e-84 | 262 |
| MS.gene68796.t1 | AT5G04370 | 39.730 | 370 | 196 | 7 | 7 | 367 | 39 | 390 | 3.69e-83 | 258 |
| MS.gene68796.t1 | AT5G04370 | 39.730 | 370 | 196 | 7 | 7 | 367 | 44 | 395 | 4.23e-83 | 258 |
| MS.gene68796.t1 | AT5G04370 | 39.730 | 370 | 196 | 7 | 7 | 367 | 58 | 409 | 5.21e-83 | 259 |
| MS.gene68796.t1 | AT3G21950 | 39.633 | 381 | 177 | 8 | 6 | 342 | 3 | 374 | 3.80e-81 | 253 |
| MS.gene68796.t1 | AT5G04380 | 40.058 | 347 | 187 | 6 | 7 | 346 | 36 | 368 | 5.41e-80 | 250 |
| MS.gene68796.t1 | AT5G04380 | 39.193 | 347 | 183 | 7 | 7 | 346 | 32 | 357 | 8.65e-76 | 239 |
| MS.gene68796.t1 | AT5G04380 | 41.311 | 305 | 159 | 5 | 48 | 346 | 7 | 297 | 5.39e-75 | 235 |
| MS.gene68796.t1 | AT2G14060 | 39.831 | 354 | 194 | 8 | 7 | 352 | 12 | 354 | 1.92e-74 | 235 |
| MS.gene68796.t1 | AT5G55250 | 34.540 | 359 | 212 | 8 | 1 | 345 | 13 | 362 | 1.97e-60 | 199 |
| MS.gene68796.t1 | AT1G15125 | 34.174 | 357 | 183 | 11 | 9 | 346 | 1 | 324 | 1.68e-58 | 193 |
| MS.gene68796.t1 | AT2G14060 | 45.333 | 225 | 114 | 3 | 6 | 229 | 11 | 227 | 5.19e-58 | 189 |
| MS.gene68796.t1 | AT1G68040 | 32.787 | 366 | 209 | 10 | 3 | 356 | 7 | 347 | 1.16e-54 | 184 |
| MS.gene68796.t1 | AT5G38100 | 33.239 | 352 | 196 | 7 | 9 | 346 | 10 | 336 | 6.51e-52 | 176 |
| MS.gene68796.t1 | AT5G37970 | 33.058 | 363 | 197 | 11 | 5 | 348 | 6 | 341 | 8.26e-51 | 174 |
| MS.gene68796.t1 | AT5G55250 | 33.436 | 326 | 194 | 8 | 34 | 345 | 8 | 324 | 1.65e-50 | 172 |
| MS.gene68796.t1 | AT3G44840 | 33.043 | 345 | 196 | 9 | 9 | 345 | 7 | 324 | 3.89e-50 | 171 |
| MS.gene68796.t1 | AT5G37990 | 32.410 | 361 | 202 | 10 | 5 | 348 | 6 | 341 | 2.43e-49 | 170 |
| MS.gene68796.t1 | AT3G44870 | 37.413 | 286 | 156 | 8 | 9 | 287 | 7 | 276 | 5.08e-49 | 169 |
| MS.gene68796.t1 | AT5G38100 | 34.539 | 304 | 167 | 5 | 52 | 346 | 33 | 313 | 2.16e-48 | 167 |
| MS.gene68796.t1 | AT5G56300 | 31.165 | 369 | 209 | 11 | 2 | 346 | 17 | 364 | 2.66e-47 | 165 |
| MS.gene68796.t1 | AT5G38780 | 31.564 | 358 | 204 | 11 | 5 | 346 | 6 | 338 | 4.34e-47 | 164 |
| MS.gene68796.t1 | AT3G44860 | 34.012 | 344 | 194 | 10 | 9 | 345 | 7 | 324 | 7.18e-47 | 163 |
| MS.gene68796.t1 | AT1G66700 | 35.739 | 291 | 160 | 9 | 9 | 287 | 9 | 284 | 8.82e-46 | 160 |
| MS.gene68796.t1 | AT5G38780 | 33.443 | 305 | 166 | 10 | 54 | 346 | 10 | 289 | 2.03e-43 | 153 |
| MS.gene68796.t1 | AT1G66720 | 32.653 | 343 | 190 | 11 | 9 | 339 | 9 | 322 | 2.93e-43 | 154 |
| MS.gene68796.t1 | AT4G26420 | 29.888 | 358 | 221 | 10 | 2 | 342 | 6 | 350 | 1.22e-41 | 150 |
| MS.gene68796.t1 | AT1G66690 | 32.425 | 367 | 208 | 11 | 1 | 353 | 1 | 341 | 3.88e-40 | 145 |
| MS.gene68796.t1 | AT1G15125 | 36.538 | 260 | 125 | 9 | 9 | 249 | 1 | 239 | 2.97e-39 | 140 |
| MS.gene68796.t1 | AT5G38100 | 36.800 | 250 | 132 | 6 | 9 | 244 | 10 | 247 | 8.20e-38 | 136 |
| MS.gene68796.t1 | AT5G38100 | 36.800 | 250 | 132 | 6 | 9 | 244 | 10 | 247 | 9.91e-38 | 136 |
| MS.gene68796.t1 | AT1G66700 | 36.279 | 215 | 119 | 5 | 9 | 218 | 9 | 210 | 2.46e-34 | 127 |
| MS.gene68796.t1 | AT4G26420 | 32.018 | 228 | 140 | 6 | 2 | 223 | 6 | 224 | 3.13e-29 | 114 |
| MS.gene68796.t1 | AT4G26420 | 31.674 | 221 | 136 | 6 | 9 | 223 | 1 | 212 | 5.80e-27 | 108 |
Find 68 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGATTATTAAACTTTA+TGG | 0.051266 | 3.2:+92473225 | MS.gene68796:CDS |
| TGCAAATAACTCCACATTTC+AGG | 0.197207 | 3.2:+92470995 | MS.gene68796:CDS |
| TCAGCCACTTTCAAACAATT+TGG | 0.225467 | 3.2:-92471318 | None:intergenic |
| ACTTTATGGAGTTGAGAAAT+TGG | 0.267027 | 3.2:+92473239 | MS.gene68796:CDS |
| ATCAGGTCCAAATGCACTTT+TGG | 0.294357 | 3.2:+92471353 | MS.gene68796:CDS |
| TAATGGATGAATTATTCATT+AGG | 0.303398 | 3.2:+92473196 | MS.gene68796:CDS |
| ATTGGTGGAGCAATCAAAAT+TGG | 0.310300 | 3.2:+92472936 | MS.gene68796:CDS |
| GCAATGGTCCTAACACTTAT+TGG | 0.313733 | 3.2:+92472446 | MS.gene68796:CDS |
| TTTAGTCCATGTTTCTTTAG+TGG | 0.317085 | 3.2:+92471543 | MS.gene68796:CDS |
| CGTTCGTCTGAACTGCTTCC+TGG | 0.322621 | 3.2:+92472419 | MS.gene68796:CDS |
| GATGCAACCAAAAGTGCATT+TGG | 0.356622 | 3.2:-92471360 | None:intergenic |
| AGAGTTTGGAGAAGAAATAA+TGG | 0.384468 | 3.2:+92473179 | MS.gene68796:CDS |
| CTGGAGGGCTTGCCCTTGTT+AGG | 0.391432 | 3.2:-92472337 | None:intergenic |
| TAAATATTCCCTTTGTTCAA+TGG | 0.392424 | 3.2:-92472314 | None:intergenic |
| CATCTCTGCCAATAAGTGTT+AGG | 0.402508 | 3.2:-92472454 | None:intergenic |
| TATTGAAGTCATTTCCAAAT+AGG | 0.408776 | 3.2:-92471461 | None:intergenic |
| AAAGCATCTTGCAACACATC+TGG | 0.424458 | 3.2:-92472287 | None:intergenic |
| GCTGACTTAGGTTGTTCATC+AGG | 0.433358 | 3.2:+92471336 | MS.gene68796:CDS |
| CTCCTCAGACGTAGGGCAAT+AGG | 0.442711 | 3.2:-92472977 | None:intergenic |
| AGAAAAGTGATTGAAGAAGA+AGG | 0.455276 | 3.2:+92473003 | MS.gene68796:CDS |
| AGAGACAATTAGAACGGATT+GGG | 0.455968 | 3.2:+92473047 | MS.gene68796:CDS |
| CTTTAGAACCATTGAACAAA+GGG | 0.461138 | 3.2:+92472306 | MS.gene68796:CDS |
| GGAAAGCCAATGTAGACTAT+AGG | 0.465513 | 3.2:-92471628 | None:intergenic |
| TAGAGACAATTAGAACGGAT+TGG | 0.473214 | 3.2:+92473046 | MS.gene68796:CDS |
| GAAAAGTGATTGAAGAAGAA+GGG | 0.480442 | 3.2:+92473004 | MS.gene68796:CDS |
| ATAAATGCATGGGTTGTGAT+TGG | 0.492459 | 3.2:+92472491 | MS.gene68796:CDS |
| TTGGTATATGCAGAAATTGG+TGG | 0.497369 | 3.2:+92472921 | MS.gene68796:intron |
| TTTCTAATCTCCTCAGACGT+AGG | 0.497948 | 3.2:-92472985 | None:intergenic |
| TGTTTCTTTAGTGGAACACC+TGG | 0.509820 | 3.2:+92471552 | MS.gene68796:CDS |
| AAAATGAACTTATAAATGCA+TGG | 0.515846 | 3.2:+92472480 | MS.gene68796:CDS |
| ATTCCTCCTATAGTCTACAT+TGG | 0.529876 | 3.2:+92471622 | MS.gene68796:CDS |
| ACTGCTTCCTGGTGGTGCAA+TGG | 0.531373 | 3.2:+92472430 | MS.gene68796:CDS |
| GAACAAGTCCTTCACATGAA+TGG | 0.532956 | 3.2:+92470951 | MS.gene68796:CDS |
| TTCTAATCTCCTCAGACGTA+GGG | 0.536749 | 3.2:-92472984 | None:intergenic |
| AAGGGAATATTTACCTAACA+AGG | 0.540815 | 3.2:+92472324 | MS.gene68796:CDS |
| TGTTTGAAAGTGGCTGACTT+AGG | 0.547633 | 3.2:+92471324 | MS.gene68796:CDS |
| TAGTCTACATTGGCTTTCCA+AGG | 0.551384 | 3.2:+92471632 | MS.gene68796:CDS |
| AAATGAACTTATAAATGCAT+GGG | 0.553184 | 3.2:+92472481 | MS.gene68796:CDS |
| ATCAGGGAGTAACTTAAAAG+TGG | 0.559627 | 3.2:-92471484 | None:intergenic |
| ACTGAAACATGGGTGACTCA+TGG | 0.560015 | 3.2:-92471425 | None:intergenic |
| TTATGGAGTTGAGAAATTGG+AGG | 0.566069 | 3.2:+92473242 | MS.gene68796:CDS |
| AAGCCAATGTAGACTATAGG+AGG | 0.570549 | 3.2:-92471625 | None:intergenic |
| CTTCACATGAATGGAGGTGA+GGG | 0.570634 | 3.2:+92470960 | MS.gene68796:CDS |
| AAGAGACTACAAGAAGAGAA+AGG | 0.570921 | 3.2:+92471513 | MS.gene68796:CDS |
| AAGGTTAGAGACAATTAGAA+CGG | 0.575103 | 3.2:+92473041 | MS.gene68796:CDS |
| ATTAATCATTACCTGAAATG+TGG | 0.578791 | 3.2:-92471006 | None:intergenic |
| ATCCTATTGCCCTACGTCTG+AGG | 0.583567 | 3.2:+92472975 | MS.gene68796:CDS |
| CATTTCCAAATAGGTCATTG+AGG | 0.588169 | 3.2:-92471452 | None:intergenic |
| CCTCACCTCCATTCATGTGA+AGG | 0.588787 | 3.2:-92470959 | None:intergenic |
| GTTAGGACCATTGCACCACC+AGG | 0.591625 | 3.2:-92472437 | None:intergenic |
| GCTTTAGAACCATTGAACAA+AGG | 0.600431 | 3.2:+92472305 | MS.gene68796:CDS |
| AACAAGGGCAAGCCCTCCAG+CGG | 0.613717 | 3.2:+92472340 | MS.gene68796:CDS |
| GTTTCTTTAGTGGAACACCT+GGG | 0.617366 | 3.2:+92471553 | MS.gene68796:CDS |
| CCTTCACATGAATGGAGGTG+AGG | 0.617516 | 3.2:+92470959 | MS.gene68796:CDS |
| TACTTGAAGATAGTATAATG+AGG | 0.631232 | 3.2:+92471277 | MS.gene68796:CDS |
| ACTCAATGACATGGCCGCAG+AGG | 0.644339 | 3.2:+92472520 | MS.gene68796:CDS |
| GCAGAGAATGGTGATGCTGA+CGG | 0.652786 | 3.2:+92471245 | MS.gene68796:intron |
| CAAGTCCTTCACATGAATGG+AGG | 0.653986 | 3.2:+92470954 | MS.gene68796:CDS |
| GGTGTTCCACTAAAGAAACA+TGG | 0.655731 | 3.2:-92471549 | None:intergenic |
| AGGGAATATTTACCTAACAA+GGG | 0.666854 | 3.2:+92472325 | MS.gene68796:CDS |
| TCAGACGTAGGGCAATAGGA+TGG | 0.668240 | 3.2:-92472973 | None:intergenic |
| ATGTTGTTTGATTACCTCTG+CGG | 0.673521 | 3.2:-92472534 | None:intergenic |
| AAAAGTGTATGGAATTGTCG+GGG | 0.680045 | 3.2:-92471596 | None:intergenic |
| GATGAAGACACAAGAGCTGA+GGG | 0.692498 | 3.2:+92473111 | MS.gene68796:CDS |
| TGGCATGGCACTCAATGACA+TGG | 0.692928 | 3.2:+92472511 | MS.gene68796:CDS |
| TCGTCTGAACTGCTTCCTGG+TGG | 0.698405 | 3.2:+92472422 | MS.gene68796:CDS |
| TGATGAAGACACAAGAGCTG+AGG | 0.700921 | 3.2:+92473110 | MS.gene68796:CDS |
| TGCATGGGTTGTGATTGGCA+TGG | 0.763144 | 3.2:+92472496 | MS.gene68796:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTAAAAAAAATT+AGG | - | chr3.2:92471946-92471965 | None:intergenic | 0.0% |
| !! | AAATAAAAAGTTGTAATTAA+TGG | + | chr3.2:92471957-92471976 | MS.gene68796:intron | 10.0% |
| !! | AAATTAATTAAACATTAACA+GGG | - | chr3.2:92472256-92472275 | None:intergenic | 10.0% |
| !! | AATAAGATTATTAAACTTTA+TGG | + | chr3.2:92473225-92473244 | MS.gene68796:CDS | 10.0% |
| !! | TATCATTATACTAATTAATT+TGG | + | chr3.2:92472775-92472794 | MS.gene68796:intron | 10.0% |
| !! | TTAAAAAAATTTATATAAGC+GGG | - | chr3.2:92472661-92472680 | None:intergenic | 10.0% |
| !!! | TATGTATGTATTATTTTATT+TGG | + | chr3.2:92472902-92472921 | MS.gene68796:intron | 10.0% |
| !!! | TTTTAAAATATTTTTTATCG+CGG | - | chr3.2:92471796-92471815 | None:intergenic | 10.0% |
| !! | AAATTAATTTATTAGTAGTG+CGG | - | chr3.2:92472581-92472600 | None:intergenic | 15.0% |
| !! | AATTAATTAAACATTAACAG+GGG | - | chr3.2:92472255-92472274 | None:intergenic | 15.0% |
| !! | ACTTACTTTGTAAATAATTA+AGG | - | chr3.2:92472828-92472847 | None:intergenic | 15.0% |
| !! | CAAATTAATTAAACATTAAC+AGG | - | chr3.2:92472257-92472276 | None:intergenic | 15.0% |
| !! | CTGTTAATGTTTAATTAATT+TGG | + | chr3.2:92472255-92472274 | MS.gene68796:intron | 15.0% |
| !!! | AATGATATTTTGATAATTGT+GGG | - | chr3.2:92472762-92472781 | None:intergenic | 15.0% |
| !!! | TAATGATATTTTGATAATTG+TGG | - | chr3.2:92472763-92472782 | None:intergenic | 15.0% |
| !! | AAAAAAATTGTTGCAACAAT+TGG | + | chr3.2:92471887-92471906 | MS.gene68796:intron | 20.0% |
| !! | AAAATGAACTTATAAATGCA+TGG | + | chr3.2:92472480-92472499 | MS.gene68796:CDS | 20.0% |
| !! | AAATAAGCACAAAATAACTT+CGG | - | chr3.2:92471772-92471791 | None:intergenic | 20.0% |
| !! | AAATGAACTTATAAATGCAT+GGG | + | chr3.2:92472481-92472500 | MS.gene68796:CDS | 20.0% |
| !! | AAATTATCTGCAAATATGAT+TGG | - | chr3.2:92472055-92472074 | None:intergenic | 20.0% |
| !! | CGATATCATATACTATATTA+TGG | - | chr3.2:92472203-92472222 | None:intergenic | 20.0% |
| !!! | ACATACATATTTTTTTTTCG+TGG | - | chr3.2:92472162-92472181 | None:intergenic | 20.0% |
| !!! | ATGATATTTTGATAATTGTG+GGG | - | chr3.2:92472761-92472780 | None:intergenic | 20.0% |
| !!! | TAATGGATGAATTATTCATT+AGG | + | chr3.2:92473196-92473215 | MS.gene68796:CDS | 20.0% |
| !!! | TTCGTGGTATAATAATTTTT+TGG | - | chr3.2:92472146-92472165 | None:intergenic | 20.0% |
| ! | ATGCAAATTCTACAAAACAA+TGG | - | chr3.2:92471076-92471095 | None:intergenic | 25.0% |
| ! | ATTAATCATTACCTGAAATG+TGG | - | chr3.2:92471009-92471028 | None:intergenic | 25.0% |
| ! | GTAGTCTCTTATAAAAATCA+GGG | - | chr3.2:92471503-92471522 | None:intergenic | 25.0% |
| ! | TAAATATTCCCTTTGTTCAA+TGG | - | chr3.2:92472317-92472336 | None:intergenic | 25.0% |
| ! | TAATTTATGTATGCAGAGAA+TGG | + | chr3.2:92471233-92471252 | MS.gene68796:intron | 25.0% |
| ! | TACTTGAAGATAGTATAATG+AGG | + | chr3.2:92471277-92471296 | MS.gene68796:CDS | 25.0% |
| ! | TATTGAAGTCATTTCCAAAT+AGG | - | chr3.2:92471464-92471483 | None:intergenic | 25.0% |
| ! | TATTTGGTATATGCAGAAAT+TGG | + | chr3.2:92472918-92472937 | MS.gene68796:intron | 25.0% |
| ! | TGATGTCAATATATATATCC+TGG | + | chr3.2:92472802-92472821 | MS.gene68796:intron | 25.0% |
| ! | TGTAGTCTCTTATAAAAATC+AGG | - | chr3.2:92471504-92471523 | None:intergenic | 25.0% |
| ! | TTGCAAAGTAATAATATGGT+AGG | + | chr3.2:92472224-92472243 | MS.gene68796:intron | 25.0% |
| !! | AAAAAAGTGTATGGAATTGT+CGG | - | chr3.2:92471601-92471620 | None:intergenic | 25.0% |
| !! | AAAAATAAGATTGGTTGTGT+TGG | - | chr3.2:92472022-92472041 | None:intergenic | 25.0% |
| !! | AAAAGTTGACTAGTTGATAT+TGG | - | chr3.2:92471049-92471068 | None:intergenic | 25.0% |
| !! | ATTTTCATATACTTTAAGCC+CGG | + | chr3.2:92471684-92471703 | MS.gene68796:intron | 25.0% |
| !! | TTTTCCAAATTGTTTGAAAG+TGG | + | chr3.2:92471314-92471333 | MS.gene68796:CDS | 25.0% |
| !! | TTTTTATATTTGTGACCAAC+CGG | - | chr3.2:92471706-92471725 | None:intergenic | 25.0% |
| !!! | ATACACAGTTTTGTTTTGAT+AGG | - | chr3.2:92472885-92472904 | None:intergenic | 25.0% |
| !!! | CACAACCAATCTTATTTTTT+TGG | + | chr3.2:92472023-92472042 | MS.gene68796:intron | 25.0% |
| !!! | TATCAAAAGCTTTTGGTAAT+TGG | - | chr3.2:92471105-92471124 | None:intergenic | 25.0% |
| !!! | TATCAACTAGTCAACTTTTT+TGG | + | chr3.2:92471050-92471069 | MS.gene68796:intron | 25.0% |
| AAGGGAATATTTACCTAACA+AGG | + | chr3.2:92472324-92472343 | MS.gene68796:CDS | 30.0% | |
| AAGGTTAGAGACAATTAGAA+CGG | + | chr3.2:92473041-92473060 | MS.gene68796:CDS | 30.0% | |
| ACTTTATGGAGTTGAGAAAT+TGG | + | chr3.2:92473239-92473258 | MS.gene68796:CDS | 30.0% | |
| AGAAAAGTGATTGAAGAAGA+AGG | + | chr3.2:92473003-92473022 | MS.gene68796:CDS | 30.0% | |
| AGAGTTTGGAGAAGAAATAA+TGG | + | chr3.2:92473179-92473198 | MS.gene68796:CDS | 30.0% | |
| AGGGAATATTTACCTAACAA+GGG | + | chr3.2:92472325-92472344 | MS.gene68796:CDS | 30.0% | |
| ATTGAGGAAAAACTGAAACA+TGG | - | chr3.2:92471439-92471458 | None:intergenic | 30.0% | |
| CTGGACCAAAAAAATAAGAT+TGG | - | chr3.2:92472031-92472050 | None:intergenic | 30.0% | |
| CTTTGTAAATAATTAAGGCC+AGG | - | chr3.2:92472823-92472842 | None:intergenic | 30.0% | |
| GAAAAGTGATTGAAGAAGAA+GGG | + | chr3.2:92473004-92473023 | MS.gene68796:CDS | 30.0% | |
| TCGCTTGCAAAGTAATAATA+TGG | + | chr3.2:92472220-92472239 | MS.gene68796:intron | 30.0% | |
| TTGAGGAAAAACTGAAACAT+GGG | - | chr3.2:92471438-92471457 | None:intergenic | 30.0% | |
| TTTAGTCCATGTTTCTTTAG+TGG | + | chr3.2:92471543-92471562 | MS.gene68796:CDS | 30.0% | |
| TTTGACATCTCTAACACTTA+AGG | - | chr3.2:92471205-92471224 | None:intergenic | 30.0% | |
| ! | AAAAAGTGTATGGAATTGTC+GGG | - | chr3.2:92471600-92471619 | None:intergenic | 30.0% |
| ! | TGGACAATATCAAAAGCTTT+TGG | - | chr3.2:92471112-92471131 | None:intergenic | 30.0% |
| ! | TTTTATATTTGTGACCAACC+GGG | - | chr3.2:92471705-92471724 | None:intergenic | 30.0% |
| ! | TTTTTCCTCAATGACCTATT+TGG | + | chr3.2:92471447-92471466 | MS.gene68796:CDS | 30.0% |
| !! | CTTTAGAACCATTGAACAAA+GGG | + | chr3.2:92472306-92472325 | MS.gene68796:CDS | 30.0% |
| !!! | TCAATTTTGAAGTCAGAGTT+TGG | + | chr3.2:92473165-92473184 | MS.gene68796:CDS | 30.0% |
| AAGAGACTACAAGAAGAGAA+AGG | + | chr3.2:92471513-92471532 | MS.gene68796:CDS | 35.0% | |
| ATCAGGGAGTAACTTAAAAG+TGG | - | chr3.2:92471487-92471506 | None:intergenic | 35.0% | |
| ATTCCTCCTATAGTCTACAT+TGG | + | chr3.2:92471622-92471641 | MS.gene68796:CDS | 35.0% | |
| ATTGGTGGAGCAATCAAAAT+TGG | + | chr3.2:92472936-92472955 | MS.gene68796:CDS | 35.0% | |
| CATTTCCAAATAGGTCATTG+AGG | - | chr3.2:92471455-92471474 | None:intergenic | 35.0% | |
| TAGAGACAATTAGAACGGAT+TGG | + | chr3.2:92473046-92473065 | MS.gene68796:CDS | 35.0% | |
| TGCAAATAACTCCACATTTC+AGG | + | chr3.2:92470995-92471014 | MS.gene68796:CDS | 35.0% | |
| TTATGGAGTTGAGAAATTGG+AGG | + | chr3.2:92473242-92473261 | MS.gene68796:CDS | 35.0% | |
| TTGGTATATGCAGAAATTGG+TGG | + | chr3.2:92472921-92472940 | MS.gene68796:intron | 35.0% | |
| ! | AAAAGTGTATGGAATTGTCG+GGG | - | chr3.2:92471599-92471618 | None:intergenic | 35.0% |
| ! | AAGGGTCTTTTGATGTTCAA+AGG | + | chr3.2:92473022-92473041 | MS.gene68796:CDS | 35.0% |
| ! | AGAGACAATTAGAACGGATT+GGG | + | chr3.2:92473047-92473066 | MS.gene68796:CDS | 35.0% |
| ! | ATAAATGCATGGGTTGTGAT+TGG | + | chr3.2:92472491-92472510 | MS.gene68796:CDS | 35.0% |
| ! | ATCTGCAAATATGATTGGTC+TGG | - | chr3.2:92472050-92472069 | None:intergenic | 35.0% |
| ! | ATGTTGTTTGATTACCTCTG+CGG | - | chr3.2:92472537-92472556 | None:intergenic | 35.0% |
| ! | GGAGGAATGAAAAAAGTGTA+TGG | - | chr3.2:92471610-92471629 | None:intergenic | 35.0% |
| ! | TCAGCCACTTTCAAACAATT+TGG | - | chr3.2:92471321-92471340 | None:intergenic | 35.0% |
| !! | GCTTTAGAACCATTGAACAA+AGG | + | chr3.2:92472305-92472324 | MS.gene68796:CDS | 35.0% |
| AAGCCAATGTAGACTATAGG+AGG | - | chr3.2:92471628-92471647 | None:intergenic | 40.0% | |
| CATCTCTGCCAATAAGTGTT+AGG | - | chr3.2:92472457-92472476 | None:intergenic | 40.0% | |
| GAACAAGTCCTTCACATGAA+TGG | + | chr3.2:92470951-92470970 | MS.gene68796:CDS | 40.0% | |
| GCAATGGTCCTAACACTTAT+TGG | + | chr3.2:92472446-92472465 | MS.gene68796:CDS | 40.0% | |
| GGAAAGCCAATGTAGACTAT+AGG | - | chr3.2:92471631-92471650 | None:intergenic | 40.0% | |
| GGTGTTCCACTAAAGAAACA+TGG | - | chr3.2:92471552-92471571 | None:intergenic | 40.0% | |
| GTTTCTTTAGTGGAACACCT+GGG | + | chr3.2:92471553-92471572 | MS.gene68796:CDS | 40.0% | |
| TCATATACTTTAAGCCCGGT+TGG | + | chr3.2:92471688-92471707 | MS.gene68796:intron | 40.0% | |
| TCCAAGGTAGTGTACTAATC+TGG | + | chr3.2:92471648-92471667 | MS.gene68796:intron | 40.0% | |
| TCCAGATTAGTACACTACCT+TGG | - | chr3.2:92471652-92471671 | None:intergenic | 40.0% | |
| TGTTTCTTTAGTGGAACACC+TGG | + | chr3.2:92471552-92471571 | MS.gene68796:CDS | 40.0% | |
| TTCTAATCTCCTCAGACGTA+GGG | - | chr3.2:92472987-92473006 | None:intergenic | 40.0% | |
| TTTCTAATCTCCTCAGACGT+AGG | - | chr3.2:92472988-92473007 | None:intergenic | 40.0% | |
| ! | AAAGCATCTTGCAACACATC+TGG | - | chr3.2:92472290-92472309 | None:intergenic | 40.0% |
| ! | ATCAGGTCCAAATGCACTTT+TGG | + | chr3.2:92471353-92471372 | MS.gene68796:CDS | 40.0% |
| ! | GAACACCTGGGTCTTTTTAT+GGG | + | chr3.2:92471565-92471584 | MS.gene68796:CDS | 40.0% |
| ! | GACTAGTTGATATTGGAGCA+AGG | - | chr3.2:92471042-92471061 | None:intergenic | 40.0% |
| ! | GATGCAACCAAAAGTGCATT+TGG | - | chr3.2:92471363-92471382 | None:intergenic | 40.0% |
| ! | TGTTTGAAAGTGGCTGACTT+AGG | + | chr3.2:92471324-92471343 | MS.gene68796:CDS | 40.0% |
| !! | AAATATGCTTTTTGCACCGC+TGG | - | chr3.2:92472359-92472378 | None:intergenic | 40.0% |
| !! | TAGTCTACATTGGCTTTCCA+AGG | + | chr3.2:92471632-92471651 | MS.gene68796:CDS | 40.0% |
| ACTGAAACATGGGTGACTCA+TGG | - | chr3.2:92471428-92471447 | None:intergenic | 45.0% | |
| AGTCTCCCATAAAAAGACCC+AGG | - | chr3.2:92471573-92471592 | None:intergenic | 45.0% | |
| CAAGTCCTTCACATGAATGG+AGG | + | chr3.2:92470954-92470973 | MS.gene68796:CDS | 45.0% | |
| CTTCACATGAATGGAGGTGA+GGG | + | chr3.2:92470960-92470979 | MS.gene68796:CDS | 45.0% | |
| GATGAAGACACAAGAGCTGA+GGG | + | chr3.2:92473111-92473130 | MS.gene68796:CDS | 45.0% | |
| TGATGAAGACACAAGAGCTG+AGG | + | chr3.2:92473110-92473129 | MS.gene68796:CDS | 45.0% | |
| ! | GCTGACTTAGGTTGTTCATC+AGG | + | chr3.2:92471336-92471355 | MS.gene68796:CDS | 45.0% |
| ! | GGAACACCTGGGTCTTTTTA+TGG | + | chr3.2:92471564-92471583 | MS.gene68796:CDS | 45.0% |
| !! | TTTAAAAAAATTTATATAAG+CGG | - | chr3.2:92472662-92472681 | None:intergenic | 5.0% |
| !!! | ATTAATTTTTTTTTTTTGAA+AGG | - | chr3.2:92472609-92472628 | None:intergenic | 5.0% |
| !!! | TAACTTTTTTATAATATAAA+TGG | - | chr3.2:92471132-92471151 | None:intergenic | 5.0% |
| ATCCTATTGCCCTACGTCTG+AGG | + | chr3.2:92472975-92472994 | MS.gene68796:CDS | 50.0% | |
| CCTCACCTCCATTCATGTGA+AGG | - | chr3.2:92470962-92470981 | None:intergenic | 50.0% | |
| CCTTCACATGAATGGAGGTG+AGG | + | chr3.2:92470959-92470978 | MS.gene68796:CDS | 50.0% | |
| TCAGACGTAGGGCAATAGGA+TGG | - | chr3.2:92472976-92472995 | None:intergenic | 50.0% | |
| TGGCATGGCACTCAATGACA+TGG | + | chr3.2:92472511-92472530 | MS.gene68796:CDS | 50.0% | |
| ! | GCAGAGAATGGTGATGCTGA+CGG | + | chr3.2:92471245-92471264 | MS.gene68796:intron | 50.0% |
| ! | TGCATGGGTTGTGATTGGCA+TGG | + | chr3.2:92472496-92472515 | MS.gene68796:CDS | 50.0% |
| !! | ATGCTTTTTGCACCGCTGGA+GGG | - | chr3.2:92472355-92472374 | None:intergenic | 50.0% |
| !! | TATGCTTTTTGCACCGCTGG+AGG | - | chr3.2:92472356-92472375 | None:intergenic | 50.0% |
| ACTCAATGACATGGCCGCAG+AGG | + | chr3.2:92472520-92472539 | MS.gene68796:CDS | 55.0% | |
| CGTTCGTCTGAACTGCTTCC+TGG | + | chr3.2:92472419-92472438 | MS.gene68796:CDS | 55.0% | |
| CTCCTCAGACGTAGGGCAAT+AGG | - | chr3.2:92472980-92472999 | None:intergenic | 55.0% | |
| GTTAGGACCATTGCACCACC+AGG | - | chr3.2:92472440-92472459 | None:intergenic | 55.0% | |
| TCGTCTGAACTGCTTCCTGG+TGG | + | chr3.2:92472422-92472441 | MS.gene68796:CDS | 55.0% | |
| ! | ACTGCTTCCTGGTGGTGCAA+TGG | + | chr3.2:92472430-92472449 | MS.gene68796:CDS | 55.0% |
| AACAAGGGCAAGCCCTCCAG+CGG | + | chr3.2:92472340-92472359 | MS.gene68796:CDS | 60.0% | |
| CTGGAGGGCTTGCCCTTGTT+AGG | - | chr3.2:92472340-92472359 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92470942 | 92473302 | 92470942 | ID=MS.gene68796 |
| chr3.2 | mRNA | 92470942 | 92473302 | 92470942 | ID=MS.gene68796.t1;Parent=MS.gene68796 |
| chr3.2 | exon | 92470942 | 92471016 | 92470942 | ID=MS.gene68796.t1.exon1;Parent=MS.gene68796.t1 |
| chr3.2 | CDS | 92470942 | 92471016 | 92470942 | ID=cds.MS.gene68796.t1;Parent=MS.gene68796.t1 |
| chr3.2 | exon | 92471249 | 92471653 | 92471249 | ID=MS.gene68796.t1.exon2;Parent=MS.gene68796.t1 |
| chr3.2 | CDS | 92471249 | 92471653 | 92471249 | ID=cds.MS.gene68796.t1;Parent=MS.gene68796.t1 |
| chr3.2 | exon | 92472284 | 92472541 | 92472284 | ID=MS.gene68796.t1.exon3;Parent=MS.gene68796.t1 |
| chr3.2 | CDS | 92472284 | 92472541 | 92472284 | ID=cds.MS.gene68796.t1;Parent=MS.gene68796.t1 |
| chr3.2 | exon | 92472934 | 92473302 | 92472934 | ID=MS.gene68796.t1.exon4;Parent=MS.gene68796.t1 |
| chr3.2 | CDS | 92472934 | 92473302 | 92472934 | ID=cds.MS.gene68796.t1;Parent=MS.gene68796.t1 |
| Gene Sequence |
| Protein sequence |
