Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014262.t1 | XP_003603961.1 | 94.9 | 369 | 18 | 1 | 1 | 368 | 1 | 369 | 4.80E-198 | 700.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014262.t1 | Q9AVK1 | 45.1 | 381 | 193 | 5 | 1 | 367 | 1 | 379 | 3.3e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014262.t1 | G7J763 | 94.9 | 369 | 18 | 1 | 1 | 368 | 1 | 369 | 3.5e-198 | 700.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033748 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene25135 | PPI |
| MS.gene037613 | MS.gene014262 | PPI |
| MS.gene024301 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene037613 | PPI |
| MS.gene014262 | MS.gene049577 | PPI |
| MS.gene014262 | MS.gene008450 | PPI |
| MS.gene014262 | MS.gene033734 | PPI |
| MS.gene024315 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene033735 | PPI |
| MS.gene59406 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene52303 | PPI |
| MS.gene014262 | MS.gene73290 | PPI |
| MS.gene014262 | MS.gene76430 | PPI |
| MS.gene014262 | MS.gene000556 | PPI |
| MS.gene014262 | MS.gene063148 | PPI |
| MS.gene014262 | MS.gene87476 | PPI |
| MS.gene014262 | MS.gene02421 | PPI |
| MS.gene52320 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene024299 | PPI |
| MS.gene07908 | MS.gene014262 | PPI |
| MS.gene68796 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene68203 | PPI |
| MS.gene014262 | MS.gene012028 | PPI |
| MS.gene014262 | MS.gene033750 | PPI |
| MS.gene014262 | MS.gene73369 | PPI |
| MS.gene64697 | MS.gene014262 | PPI |
| MS.gene99450 | MS.gene014262 | PPI |
| MS.gene014262 | MS.gene010553 | PPI |
| MS.gene014262 | MS.gene024314 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014262.t1 | MTR_3g117060 | 94.851 | 369 | 18 | 1 | 1 | 368 | 1 | 369 | 0.0 | 728 |
| MS.gene014262.t1 | MTR_3g467560 | 53.678 | 367 | 165 | 3 | 1 | 366 | 25 | 387 | 3.33e-138 | 399 |
| MS.gene014262.t1 | MTR_7g084620 | 51.762 | 369 | 169 | 5 | 1 | 366 | 1 | 363 | 1.71e-130 | 378 |
| MS.gene014262.t1 | MTR_7g084350 | 50.409 | 367 | 175 | 4 | 3 | 366 | 1 | 363 | 2.66e-128 | 373 |
| MS.gene014262.t1 | MTR_8g077040 | 45.187 | 374 | 191 | 4 | 1 | 366 | 1 | 368 | 3.52e-114 | 337 |
| MS.gene014262.t1 | MTR_4g018820 | 46.257 | 374 | 180 | 4 | 1 | 368 | 1 | 359 | 7.69e-114 | 335 |
| MS.gene014262.t1 | MTR_5g020940 | 45.312 | 384 | 181 | 6 | 1 | 368 | 11 | 381 | 1.01e-112 | 333 |
| MS.gene014262.t1 | MTR_3g467270 | 45.867 | 375 | 188 | 6 | 1 | 367 | 1 | 368 | 1.32e-112 | 333 |
| MS.gene014262.t1 | MTR_8g076900 | 44.086 | 372 | 194 | 3 | 1 | 368 | 1 | 362 | 1.53e-109 | 325 |
| MS.gene014262.t1 | MTR_8g020690 | 43.432 | 373 | 193 | 5 | 1 | 368 | 1 | 360 | 3.94e-105 | 313 |
| MS.gene014262.t1 | MTR_6g056070 | 43.548 | 372 | 189 | 5 | 1 | 367 | 1 | 356 | 2.25e-104 | 311 |
| MS.gene014262.t1 | MTR_8g020700 | 41.223 | 376 | 194 | 4 | 1 | 368 | 1 | 357 | 8.26e-99 | 297 |
| MS.gene014262.t1 | MTR_7g084330 | 45.821 | 347 | 160 | 7 | 25 | 366 | 8 | 331 | 3.36e-96 | 290 |
| MS.gene014262.t1 | MTR_5g046110 | 42.486 | 346 | 179 | 4 | 1 | 339 | 61 | 393 | 8.48e-96 | 291 |
| MS.gene014262.t1 | MTR_1g022465 | 43.717 | 382 | 195 | 7 | 1 | 367 | 1 | 377 | 1.09e-91 | 280 |
| MS.gene014262.t1 | MTR_1g022455 | 42.408 | 382 | 201 | 7 | 1 | 367 | 1 | 378 | 6.90e-89 | 273 |
| MS.gene014262.t1 | MTR_8g076900 | 51.200 | 250 | 113 | 2 | 1 | 246 | 1 | 245 | 5.36e-86 | 261 |
| MS.gene014262.t1 | MTR_6g015620 | 95.122 | 123 | 6 | 0 | 246 | 368 | 16 | 138 | 3.01e-78 | 237 |
| MS.gene014262.t1 | MTR_8g020700 | 45.769 | 260 | 131 | 2 | 1 | 255 | 1 | 255 | 5.71e-77 | 238 |
| MS.gene014262.t1 | MTR_3g054330 | 35.450 | 378 | 220 | 12 | 1 | 365 | 10 | 376 | 2.26e-62 | 204 |
| MS.gene014262.t1 | MTR_8g077030 | 36.735 | 343 | 127 | 6 | 1 | 342 | 1 | 254 | 2.24e-59 | 200 |
| MS.gene014262.t1 | MTR_5g093900 | 32.552 | 384 | 233 | 9 | 1 | 365 | 13 | 389 | 8.76e-58 | 192 |
| MS.gene014262.t1 | MTR_3g052700 | 32.984 | 382 | 232 | 10 | 1 | 365 | 13 | 387 | 1.32e-57 | 192 |
| MS.gene014262.t1 | MTR_1g108660 | 32.378 | 349 | 195 | 8 | 26 | 361 | 9 | 329 | 1.92e-52 | 177 |
| MS.gene014262.t1 | MTR_7g084340 | 43.802 | 121 | 63 | 2 | 248 | 366 | 12 | 129 | 8.94e-23 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014262.t1 | AT5G38020 | 44.663 | 356 | 178 | 6 | 6 | 350 | 3 | 350 | 9.16e-96 | 290 |
| MS.gene014262.t1 | AT3G11480 | 42.133 | 375 | 189 | 6 | 2 | 367 | 24 | 379 | 2.20e-92 | 281 |
| MS.gene014262.t1 | AT4G36470 | 42.319 | 345 | 183 | 5 | 3 | 339 | 6 | 342 | 3.51e-90 | 276 |
| MS.gene014262.t1 | AT5G66430 | 40.984 | 366 | 197 | 6 | 9 | 367 | 1 | 354 | 6.98e-90 | 274 |
| MS.gene014262.t1 | AT3G21950 | 43.266 | 349 | 177 | 7 | 6 | 342 | 3 | 342 | 1.09e-87 | 269 |
| MS.gene014262.t1 | AT5G38020 | 45.687 | 313 | 152 | 5 | 48 | 350 | 7 | 311 | 4.32e-86 | 264 |
| MS.gene014262.t1 | AT1G19640 | 40.665 | 391 | 203 | 7 | 1 | 366 | 1 | 387 | 1.67e-84 | 262 |
| MS.gene014262.t1 | AT5G04370 | 39.730 | 370 | 196 | 7 | 7 | 367 | 39 | 390 | 9.80e-84 | 260 |
| MS.gene014262.t1 | AT5G04370 | 39.730 | 370 | 196 | 7 | 7 | 367 | 58 | 409 | 1.20e-83 | 260 |
| MS.gene014262.t1 | AT5G04370 | 39.730 | 370 | 196 | 7 | 7 | 367 | 44 | 395 | 1.41e-83 | 259 |
| MS.gene014262.t1 | AT3G21950 | 39.895 | 381 | 176 | 8 | 6 | 342 | 3 | 374 | 4.32e-81 | 253 |
| MS.gene014262.t1 | AT5G04380 | 40.346 | 347 | 186 | 6 | 7 | 346 | 36 | 368 | 9.28e-80 | 249 |
| MS.gene014262.t1 | AT2G14060 | 40.113 | 354 | 193 | 8 | 7 | 352 | 12 | 354 | 4.63e-76 | 239 |
| MS.gene014262.t1 | AT5G04380 | 39.481 | 347 | 182 | 7 | 7 | 346 | 32 | 357 | 2.05e-75 | 238 |
| MS.gene014262.t1 | AT5G04380 | 41.639 | 305 | 158 | 5 | 48 | 346 | 7 | 297 | 9.87e-75 | 234 |
| MS.gene014262.t1 | AT5G55250 | 34.819 | 359 | 211 | 9 | 1 | 345 | 13 | 362 | 8.96e-61 | 200 |
| MS.gene014262.t1 | AT2G14060 | 45.333 | 225 | 114 | 3 | 6 | 229 | 11 | 227 | 3.64e-58 | 189 |
| MS.gene014262.t1 | AT1G15125 | 33.894 | 357 | 184 | 11 | 9 | 346 | 1 | 324 | 4.84e-57 | 189 |
| MS.gene014262.t1 | AT1G68040 | 32.787 | 366 | 209 | 10 | 3 | 356 | 7 | 347 | 9.30e-55 | 184 |
| MS.gene014262.t1 | AT5G38100 | 33.523 | 352 | 195 | 8 | 9 | 346 | 10 | 336 | 1.27e-51 | 176 |
| MS.gene014262.t1 | AT5G37970 | 33.333 | 363 | 196 | 13 | 5 | 348 | 6 | 341 | 3.05e-51 | 175 |
| MS.gene014262.t1 | AT5G55250 | 33.742 | 326 | 193 | 9 | 34 | 345 | 8 | 324 | 9.62e-51 | 173 |
| MS.gene014262.t1 | AT3G44840 | 33.140 | 344 | 197 | 8 | 9 | 345 | 7 | 324 | 1.96e-50 | 172 |
| MS.gene014262.t1 | AT5G37990 | 33.333 | 363 | 196 | 12 | 5 | 348 | 6 | 341 | 5.84e-50 | 171 |
| MS.gene014262.t1 | AT3G44870 | 37.413 | 286 | 156 | 8 | 9 | 287 | 7 | 276 | 6.41e-49 | 169 |
| MS.gene014262.t1 | AT5G38100 | 34.868 | 304 | 166 | 6 | 52 | 346 | 33 | 313 | 4.68e-48 | 166 |
| MS.gene014262.t1 | AT5G56300 | 30.110 | 362 | 222 | 10 | 2 | 346 | 17 | 364 | 2.58e-47 | 165 |
| MS.gene014262.t1 | AT5G38780 | 31.564 | 358 | 204 | 11 | 5 | 346 | 6 | 338 | 3.82e-47 | 164 |
| MS.gene014262.t1 | AT3G44860 | 36.364 | 286 | 162 | 7 | 9 | 287 | 7 | 279 | 8.59e-47 | 163 |
| MS.gene014262.t1 | AT1G66700 | 35.739 | 291 | 160 | 9 | 9 | 287 | 9 | 284 | 7.78e-46 | 160 |
| MS.gene014262.t1 | AT1G66720 | 32.653 | 343 | 190 | 11 | 9 | 339 | 9 | 322 | 1.53e-43 | 154 |
| MS.gene014262.t1 | AT5G38780 | 33.443 | 305 | 166 | 10 | 54 | 346 | 10 | 289 | 1.72e-43 | 153 |
| MS.gene014262.t1 | AT4G26420 | 29.248 | 359 | 222 | 10 | 2 | 342 | 6 | 350 | 2.45e-41 | 149 |
| MS.gene014262.t1 | AT1G66690 | 32.425 | 367 | 208 | 11 | 1 | 353 | 1 | 341 | 2.81e-40 | 145 |
| MS.gene014262.t1 | AT1G15125 | 36.538 | 260 | 125 | 9 | 9 | 249 | 1 | 239 | 6.01e-39 | 139 |
| MS.gene014262.t1 | AT5G38100 | 36.800 | 250 | 132 | 6 | 9 | 244 | 10 | 247 | 7.70e-38 | 136 |
| MS.gene014262.t1 | AT5G38100 | 36.800 | 250 | 132 | 6 | 9 | 244 | 10 | 247 | 7.87e-38 | 136 |
| MS.gene014262.t1 | AT1G66700 | 36.279 | 215 | 119 | 5 | 9 | 218 | 9 | 210 | 2.29e-34 | 127 |
| MS.gene014262.t1 | AT4G26420 | 32.018 | 228 | 140 | 6 | 2 | 223 | 6 | 224 | 1.69e-29 | 114 |
| MS.gene014262.t1 | AT4G26420 | 31.674 | 221 | 136 | 6 | 9 | 223 | 1 | 212 | 3.48e-27 | 108 |
Find 68 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGATTATTAAACTTTA+TGG | 0.051266 | 3.3:+95106612 | MS.gene014262:CDS |
| TGCAAATAACTCCACATTTC+AGG | 0.197207 | 3.3:+95104364 | MS.gene014262:CDS |
| TCAGCCACTTTCAAACAATT+TGG | 0.225467 | 3.3:-95104698 | None:intergenic |
| ACTTTATGGAGTTGAGAAAT+TGG | 0.267027 | 3.3:+95106626 | MS.gene014262:CDS |
| TAATGGATGAATTGTTCATT+AGG | 0.276319 | 3.3:+95106583 | MS.gene014262:CDS |
| ATCAGGTCCAAATGCACTTT+TGG | 0.294357 | 3.3:+95104733 | MS.gene014262:CDS |
| ATTGGTGGAGCAATCAAAAT+TGG | 0.310300 | 3.3:+95106323 | MS.gene014262:CDS |
| GCAATGGTCCTAACACTTAT+TGG | 0.313733 | 3.3:+95105826 | MS.gene014262:CDS |
| TTTAGTCCATGTTTCTTTAG+TGG | 0.317085 | 3.3:+95104923 | MS.gene014262:CDS |
| CGTTCGTCTGAACTGCTTCC+TGG | 0.322621 | 3.3:+95105799 | MS.gene014262:CDS |
| GATGCAACCAAAAGTGCATT+TGG | 0.356622 | 3.3:-95104740 | None:intergenic |
| AGAGTTTGGAGAAGAAATAA+TGG | 0.384468 | 3.3:+95106566 | MS.gene014262:CDS |
| CTGGAGGGCTTGCCCTTGTT+AGG | 0.391432 | 3.3:-95105717 | None:intergenic |
| TAAATATTCCCTTTGTTCAA+TGG | 0.392424 | 3.3:-95105694 | None:intergenic |
| CATCTCTGCCAATAAGTGTT+AGG | 0.402508 | 3.3:-95105834 | None:intergenic |
| TATTGAAGTCATTTCCAAAT+AGG | 0.408776 | 3.3:-95104841 | None:intergenic |
| ATAAATGCATGGGTTGTCAT+TGG | 0.420457 | 3.3:+95105871 | MS.gene014262:CDS |
| AAAGCATCTTGCAACACATC+TGG | 0.424458 | 3.3:-95105667 | None:intergenic |
| GCTGACTTAGGTTGTTCATC+AGG | 0.433358 | 3.3:+95104716 | MS.gene014262:CDS |
| CTCCTCAGACGTAGGGCAAT+AGG | 0.442711 | 3.3:-95106364 | None:intergenic |
| AGAAAAGTGATTGAAGAAGA+AGG | 0.455276 | 3.3:+95106390 | MS.gene014262:CDS |
| AGAGACAATTAGAACGGATT+GGG | 0.455968 | 3.3:+95106434 | MS.gene014262:CDS |
| CTTTAGAACCATTGAACAAA+GGG | 0.461138 | 3.3:+95105686 | MS.gene014262:CDS |
| GGAAAGCCAATGTAGACTAT+AGG | 0.465513 | 3.3:-95105008 | None:intergenic |
| TAGAGACAATTAGAACGGAT+TGG | 0.473214 | 3.3:+95106433 | MS.gene014262:CDS |
| GAAAAGTGATTGAAGAAGAA+GGG | 0.480442 | 3.3:+95106391 | MS.gene014262:CDS |
| TTGGTATATGCAGAAATTGG+TGG | 0.497369 | 3.3:+95106308 | MS.gene014262:intron |
| TTTCTAATCTCCTCAGACGT+AGG | 0.497948 | 3.3:-95106372 | None:intergenic |
| TGTTTCTTTAGTGGAACACC+TGG | 0.509820 | 3.3:+95104932 | MS.gene014262:CDS |
| AAAATGAACTTATAAATGCA+TGG | 0.515846 | 3.3:+95105860 | MS.gene014262:CDS |
| ATTCCTCCTATAGTCTACAT+TGG | 0.529876 | 3.3:+95105002 | MS.gene014262:CDS |
| ACTGCTTCCTGGTGGTGCAA+TGG | 0.531373 | 3.3:+95105810 | MS.gene014262:CDS |
| GAACAAGTCCTTCACATGAA+TGG | 0.532956 | 3.3:+95104320 | MS.gene014262:CDS |
| TTCTAATCTCCTCAGACGTA+GGG | 0.536749 | 3.3:-95106371 | None:intergenic |
| AAGGGAATATTTACCTAACA+AGG | 0.540815 | 3.3:+95105704 | MS.gene014262:CDS |
| TGTTTGAAAGTGGCTGACTT+AGG | 0.547633 | 3.3:+95104704 | MS.gene014262:CDS |
| TAGTCTACATTGGCTTTCCA+AGG | 0.551384 | 3.3:+95105012 | MS.gene014262:CDS |
| AAATGAACTTATAAATGCAT+GGG | 0.553184 | 3.3:+95105861 | MS.gene014262:CDS |
| ATCAGGGAGTAACTTAAAAG+TGG | 0.559627 | 3.3:-95104864 | None:intergenic |
| ACTGAAACATGGGTGACTCA+TGG | 0.560015 | 3.3:-95104805 | None:intergenic |
| TTATGGAGTTGAGAAATTGG+AGG | 0.566069 | 3.3:+95106629 | MS.gene014262:CDS |
| AAGCCAATGTAGACTATAGG+AGG | 0.570549 | 3.3:-95105005 | None:intergenic |
| CTTCACATGAATGGAGGTGA+GGG | 0.570634 | 3.3:+95104329 | MS.gene014262:CDS |
| AAGAGACTACAAGAAGAGAA+AGG | 0.570921 | 3.3:+95104893 | MS.gene014262:CDS |
| AAGGTTAGAGACAATTAGAA+CGG | 0.575103 | 3.3:+95106428 | MS.gene014262:CDS |
| ATTAATCATTACCTGAAATG+TGG | 0.578791 | 3.3:-95104375 | None:intergenic |
| ATCCTATTGCCCTACGTCTG+AGG | 0.583567 | 3.3:+95106362 | MS.gene014262:CDS |
| CATTTCCAAATAGGTCATTG+AGG | 0.588169 | 3.3:-95104832 | None:intergenic |
| CCTCACCTCCATTCATGTGA+AGG | 0.588787 | 3.3:-95104328 | None:intergenic |
| GTTAGGACCATTGCACCACC+AGG | 0.591625 | 3.3:-95105817 | None:intergenic |
| GCTTTAGAACCATTGAACAA+AGG | 0.600431 | 3.3:+95105685 | MS.gene014262:CDS |
| AACAAGGGCAAGCCCTCCAG+CGG | 0.613717 | 3.3:+95105720 | MS.gene014262:CDS |
| GTTTCTTTAGTGGAACACCT+GGG | 0.617366 | 3.3:+95104933 | MS.gene014262:CDS |
| CCTTCACATGAATGGAGGTG+AGG | 0.617516 | 3.3:+95104328 | MS.gene014262:CDS |
| TACTTGAAGATAGTATAATG+AGG | 0.631232 | 3.3:+95104657 | MS.gene014262:CDS |
| ACTCAATGACATGGCCGCAG+AGG | 0.644339 | 3.3:+95105900 | MS.gene014262:CDS |
| TGGCATGGCACTCAATGACA+TGG | 0.644988 | 3.3:+95105891 | MS.gene014262:CDS |
| AAAAGTGAATGGAATTGTCG+GGG | 0.649123 | 3.3:-95104976 | None:intergenic |
| GCAGAGAATGGTGATGCTGA+CGG | 0.652786 | 3.3:+95104625 | MS.gene014262:intron |
| CAAGTCCTTCACATGAATGG+AGG | 0.653986 | 3.3:+95104323 | MS.gene014262:CDS |
| GGTGTTCCACTAAAGAAACA+TGG | 0.655731 | 3.3:-95104929 | None:intergenic |
| TGCATGGGTTGTCATTGGCA+TGG | 0.666196 | 3.3:+95105876 | MS.gene014262:CDS |
| AGGGAATATTTACCTAACAA+GGG | 0.666854 | 3.3:+95105705 | MS.gene014262:CDS |
| TCAGACGTAGGGCAATAGGA+TGG | 0.668240 | 3.3:-95106360 | None:intergenic |
| ATGTTGTTTGATTACCTCTG+CGG | 0.673521 | 3.3:-95105914 | None:intergenic |
| GATGAAGACACAAGAGCTGA+GGG | 0.692498 | 3.3:+95106498 | MS.gene014262:CDS |
| TCGTCTGAACTGCTTCCTGG+TGG | 0.698405 | 3.3:+95105802 | MS.gene014262:CDS |
| TGATGAAGACACAAGAGCTG+AGG | 0.700921 | 3.3:+95106497 | MS.gene014262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTAAAAAAAATT+AGG | - | chr3.3:95105326-95105345 | None:intergenic | 0.0% |
| !! | AAATAAAAAGTTGTAATTAA+TGG | + | chr3.3:95105337-95105356 | MS.gene014262:intron | 10.0% |
| !! | AAATTAATTAAACATTAACA+GGG | - | chr3.3:95105636-95105655 | None:intergenic | 10.0% |
| !! | AATAAGATTATTAAACTTTA+TGG | + | chr3.3:95106612-95106631 | MS.gene014262:CDS | 10.0% |
| !! | TATCATTATACTAATTAATT+TGG | + | chr3.3:95106158-95106177 | MS.gene014262:intron | 10.0% |
| !! | TTAAAAAAATTTATATAAGC+GGG | - | chr3.3:95106042-95106061 | None:intergenic | 10.0% |
| !!! | TATGTATGTATTATTTTATT+TGG | + | chr3.3:95106289-95106308 | MS.gene014262:intron | 10.0% |
| !!! | TTTTAAAATATTTTTTATCG+CGG | - | chr3.3:95105176-95105195 | None:intergenic | 10.0% |
| !! | AATTAATTAAACATTAACAG+GGG | - | chr3.3:95105635-95105654 | None:intergenic | 15.0% |
| !! | CAAATTAATTAAACATTAAC+AGG | - | chr3.3:95105637-95105656 | None:intergenic | 15.0% |
| !! | CTGTTAATGTTTAATTAATT+TGG | + | chr3.3:95105635-95105654 | MS.gene014262:intron | 15.0% |
| !!! | AATGATATTTTGATAATTGT+GGG | - | chr3.3:95106145-95106164 | None:intergenic | 15.0% |
| !!! | TAATGATATTTTGATAATTG+TGG | - | chr3.3:95106146-95106165 | None:intergenic | 15.0% |
| !! | AAAAAAATTGTTGCAACAAT+TGG | + | chr3.3:95105267-95105286 | MS.gene014262:intron | 20.0% |
| !! | AAAATGAACTTATAAATGCA+TGG | + | chr3.3:95105860-95105879 | MS.gene014262:CDS | 20.0% |
| !! | AAATAAGCACAAAATAACTT+CGG | - | chr3.3:95105152-95105171 | None:intergenic | 20.0% |
| !! | AAATGAACTTATAAATGCAT+GGG | + | chr3.3:95105861-95105880 | MS.gene014262:CDS | 20.0% |
| !! | AAATTATCTGCAAATATGAT+TGG | - | chr3.3:95105435-95105454 | None:intergenic | 20.0% |
| !! | ACTCACTTTGTAAATAATTA+AGG | - | chr3.3:95106211-95106230 | None:intergenic | 20.0% |
| !! | CGATATCATATACTATATTA+TGG | - | chr3.3:95105583-95105602 | None:intergenic | 20.0% |
| !!! | ACATACATATTTTTTTTTCG+TGG | - | chr3.3:95105542-95105561 | None:intergenic | 20.0% |
| !!! | ATGATATTTTGATAATTGTG+GGG | - | chr3.3:95106144-95106163 | None:intergenic | 20.0% |
| !!! | TTCGTGGTATAATAATTTTT+TGG | - | chr3.3:95105526-95105545 | None:intergenic | 20.0% |
| ! | AAAAAAGTGAATGGAATTGT+CGG | - | chr3.3:95104981-95105000 | None:intergenic | 25.0% |
| ! | ATGCAAATTCTACAAAACAA+TGG | - | chr3.3:95104445-95104464 | None:intergenic | 25.0% |
| ! | ATTAATCATTACCTGAAATG+TGG | - | chr3.3:95104378-95104397 | None:intergenic | 25.0% |
| ! | GTAGTCTCTTATAAAAATCA+GGG | - | chr3.3:95104883-95104902 | None:intergenic | 25.0% |
| ! | TAAATATTCCCTTTGTTCAA+TGG | - | chr3.3:95105697-95105716 | None:intergenic | 25.0% |
| ! | TACTTGAAGATAGTATAATG+AGG | + | chr3.3:95104657-95104676 | MS.gene014262:CDS | 25.0% |
| ! | TATTGAAGTCATTTCCAAAT+AGG | - | chr3.3:95104844-95104863 | None:intergenic | 25.0% |
| ! | TATTTGGTATATGCAGAAAT+TGG | + | chr3.3:95106305-95106324 | MS.gene014262:intron | 25.0% |
| ! | TGATGTCAATATATATATCC+TGG | + | chr3.3:95106185-95106204 | MS.gene014262:intron | 25.0% |
| ! | TGTAGTCTCTTATAAAAATC+AGG | - | chr3.3:95104884-95104903 | None:intergenic | 25.0% |
| ! | TTGCAAAGTAATAATATGGT+AGG | + | chr3.3:95105604-95105623 | MS.gene014262:intron | 25.0% |
| !! | AAAAATAAGATTGGTTGTGT+TGG | - | chr3.3:95105402-95105421 | None:intergenic | 25.0% |
| !! | AAAAGTTGACTAGTTGATAT+TGG | - | chr3.3:95104418-95104437 | None:intergenic | 25.0% |
| !! | ATTTTCATATCATTTAAGCC+CGG | + | chr3.3:95105064-95105083 | MS.gene014262:intron | 25.0% |
| !! | TAATGGATGAATTGTTCATT+AGG | + | chr3.3:95106583-95106602 | MS.gene014262:CDS | 25.0% |
| !! | TTTTCCAAATTGTTTGAAAG+TGG | + | chr3.3:95104694-95104713 | MS.gene014262:CDS | 25.0% |
| !! | TTTTTATATTTGTGACCAAC+CGG | - | chr3.3:95105086-95105105 | None:intergenic | 25.0% |
| !!! | ATACACAGTTTTGTTTTGAT+AGG | - | chr3.3:95106268-95106287 | None:intergenic | 25.0% |
| !!! | CACAACCAATCTTATTTTTT+TGG | + | chr3.3:95105403-95105422 | MS.gene014262:intron | 25.0% |
| !!! | TATCAAAAGCTTTTGGTAAT+TGG | - | chr3.3:95104474-95104493 | None:intergenic | 25.0% |
| !!! | TATCAACTAGTCAACTTTTT+TGG | + | chr3.3:95104419-95104438 | MS.gene014262:intron | 25.0% |
| AAAAAGTGAATGGAATTGTC+GGG | - | chr3.3:95104980-95104999 | None:intergenic | 30.0% | |
| AAGGGAATATTTACCTAACA+AGG | + | chr3.3:95105704-95105723 | MS.gene014262:CDS | 30.0% | |
| AAGGTTAGAGACAATTAGAA+CGG | + | chr3.3:95106428-95106447 | MS.gene014262:CDS | 30.0% | |
| ACTTTATGGAGTTGAGAAAT+TGG | + | chr3.3:95106626-95106645 | MS.gene014262:CDS | 30.0% | |
| AGAAAAGTGATTGAAGAAGA+AGG | + | chr3.3:95106390-95106409 | MS.gene014262:CDS | 30.0% | |
| AGAGTTTGGAGAAGAAATAA+TGG | + | chr3.3:95106566-95106585 | MS.gene014262:CDS | 30.0% | |
| AGGGAATATTTACCTAACAA+GGG | + | chr3.3:95105705-95105724 | MS.gene014262:CDS | 30.0% | |
| ATTGAGGAAAAACTGAAACA+TGG | - | chr3.3:95104819-95104838 | None:intergenic | 30.0% | |
| CATTCTCTGCATACATATAT+GGG | - | chr3.3:95104615-95104634 | None:intergenic | 30.0% | |
| CTGGACCAAAAAAATAAGAT+TGG | - | chr3.3:95105411-95105430 | None:intergenic | 30.0% | |
| CTTTGTAAATAATTAAGGCC+AGG | - | chr3.3:95106206-95106225 | None:intergenic | 30.0% | |
| GAAAAGTGATTGAAGAAGAA+GGG | + | chr3.3:95106391-95106410 | MS.gene014262:CDS | 30.0% | |
| TCGCTTGCAAAGTAATAATA+TGG | + | chr3.3:95105600-95105619 | MS.gene014262:intron | 30.0% | |
| TTGAGGAAAAACTGAAACAT+GGG | - | chr3.3:95104818-95104837 | None:intergenic | 30.0% | |
| TTTAGTCCATGTTTCTTTAG+TGG | + | chr3.3:95104923-95104942 | MS.gene014262:CDS | 30.0% | |
| TTTGACATCTCTAACACTTA+AGG | - | chr3.3:95104574-95104593 | None:intergenic | 30.0% | |
| ! | TGGACAATATCAAAAGCTTT+TGG | - | chr3.3:95104481-95104500 | None:intergenic | 30.0% |
| ! | TTTTATATTTGTGACCAACC+GGG | - | chr3.3:95105085-95105104 | None:intergenic | 30.0% |
| ! | TTTTTCCTCAATGACCTATT+TGG | + | chr3.3:95104827-95104846 | MS.gene014262:CDS | 30.0% |
| !! | CTTTAGAACCATTGAACAAA+GGG | + | chr3.3:95105686-95105705 | MS.gene014262:CDS | 30.0% |
| !!! | TCAATTTTGAAGTCAGAGTT+TGG | + | chr3.3:95106552-95106571 | MS.gene014262:CDS | 30.0% |
| AAAAGTGAATGGAATTGTCG+GGG | - | chr3.3:95104979-95104998 | None:intergenic | 35.0% | |
| AAGAGACTACAAGAAGAGAA+AGG | + | chr3.3:95104893-95104912 | MS.gene014262:CDS | 35.0% | |
| ATCAGGGAGTAACTTAAAAG+TGG | - | chr3.3:95104867-95104886 | None:intergenic | 35.0% | |
| ATTCCTCCTATAGTCTACAT+TGG | + | chr3.3:95105002-95105021 | MS.gene014262:CDS | 35.0% | |
| ATTGGTGGAGCAATCAAAAT+TGG | + | chr3.3:95106323-95106342 | MS.gene014262:CDS | 35.0% | |
| CATTTCCAAATAGGTCATTG+AGG | - | chr3.3:95104835-95104854 | None:intergenic | 35.0% | |
| CCATATATGTATGCAGAGAA+TGG | + | chr3.3:95104613-95104632 | MS.gene014262:intron | 35.0% | |
| CCATTCTCTGCATACATATA+TGG | - | chr3.3:95104616-95104635 | None:intergenic | 35.0% | |
| GGAGGAATGAAAAAAGTGAA+TGG | - | chr3.3:95104990-95105009 | None:intergenic | 35.0% | |
| TAGAGACAATTAGAACGGAT+TGG | + | chr3.3:95106433-95106452 | MS.gene014262:CDS | 35.0% | |
| TCCAAGGTAGTATACTAATC+TGG | + | chr3.3:95105028-95105047 | MS.gene014262:intron | 35.0% | |
| TCCAGATTAGTATACTACCT+TGG | - | chr3.3:95105032-95105051 | None:intergenic | 35.0% | |
| TGCAAATAACTCCACATTTC+AGG | + | chr3.3:95104364-95104383 | MS.gene014262:CDS | 35.0% | |
| TTATGGAGTTGAGAAATTGG+AGG | + | chr3.3:95106629-95106648 | MS.gene014262:CDS | 35.0% | |
| TTGGTATATGCAGAAATTGG+TGG | + | chr3.3:95106308-95106327 | MS.gene014262:intron | 35.0% | |
| ! | AAGGGTCTTTTGATGTTCAA+AGG | + | chr3.3:95106409-95106428 | MS.gene014262:CDS | 35.0% |
| ! | AGAGACAATTAGAACGGATT+GGG | + | chr3.3:95106434-95106453 | MS.gene014262:CDS | 35.0% |
| ! | ATAAATGCATGGGTTGTCAT+TGG | + | chr3.3:95105871-95105890 | MS.gene014262:CDS | 35.0% |
| ! | ATCTGCAAATATGATTGGTC+TGG | - | chr3.3:95105430-95105449 | None:intergenic | 35.0% |
| ! | ATGTTGTTTGATTACCTCTG+CGG | - | chr3.3:95105917-95105936 | None:intergenic | 35.0% |
| ! | TCAGCCACTTTCAAACAATT+TGG | - | chr3.3:95104701-95104720 | None:intergenic | 35.0% |
| !! | GCTTTAGAACCATTGAACAA+AGG | + | chr3.3:95105685-95105704 | MS.gene014262:CDS | 35.0% |
| AAGCCAATGTAGACTATAGG+AGG | - | chr3.3:95105008-95105027 | None:intergenic | 40.0% | |
| CATCTCTGCCAATAAGTGTT+AGG | - | chr3.3:95105837-95105856 | None:intergenic | 40.0% | |
| GAACAAGTCCTTCACATGAA+TGG | + | chr3.3:95104320-95104339 | MS.gene014262:CDS | 40.0% | |
| GCAATGGTCCTAACACTTAT+TGG | + | chr3.3:95105826-95105845 | MS.gene014262:CDS | 40.0% | |
| GGAAAGCCAATGTAGACTAT+AGG | - | chr3.3:95105011-95105030 | None:intergenic | 40.0% | |
| GGTGTTCCACTAAAGAAACA+TGG | - | chr3.3:95104932-95104951 | None:intergenic | 40.0% | |
| GTTTCTTTAGTGGAACACCT+GGG | + | chr3.3:95104933-95104952 | MS.gene014262:CDS | 40.0% | |
| TCATATCATTTAAGCCCGGT+TGG | + | chr3.3:95105068-95105087 | MS.gene014262:intron | 40.0% | |
| TGTTTCTTTAGTGGAACACC+TGG | + | chr3.3:95104932-95104951 | MS.gene014262:CDS | 40.0% | |
| TTCTAATCTCCTCAGACGTA+GGG | - | chr3.3:95106374-95106393 | None:intergenic | 40.0% | |
| TTTCTAATCTCCTCAGACGT+AGG | - | chr3.3:95106375-95106394 | None:intergenic | 40.0% | |
| ! | AAAGCATCTTGCAACACATC+TGG | - | chr3.3:95105670-95105689 | None:intergenic | 40.0% |
| ! | ATCAGGTCCAAATGCACTTT+TGG | + | chr3.3:95104733-95104752 | MS.gene014262:CDS | 40.0% |
| ! | GAACACCTGGGTCTTTTTAT+GGG | + | chr3.3:95104945-95104964 | MS.gene014262:CDS | 40.0% |
| ! | GACTAGTTGATATTGGAGCA+AGG | - | chr3.3:95104411-95104430 | None:intergenic | 40.0% |
| ! | GATGCAACCAAAAGTGCATT+TGG | - | chr3.3:95104743-95104762 | None:intergenic | 40.0% |
| ! | TGTTTGAAAGTGGCTGACTT+AGG | + | chr3.3:95104704-95104723 | MS.gene014262:CDS | 40.0% |
| !! | AAATATGCTTTTTGCACCGC+TGG | - | chr3.3:95105739-95105758 | None:intergenic | 40.0% |
| !! | TAGTCTACATTGGCTTTCCA+AGG | + | chr3.3:95105012-95105031 | MS.gene014262:CDS | 40.0% |
| ACTGAAACATGGGTGACTCA+TGG | - | chr3.3:95104808-95104827 | None:intergenic | 45.0% | |
| AGTCTCCCATAAAAAGACCC+AGG | - | chr3.3:95104953-95104972 | None:intergenic | 45.0% | |
| CAAGTCCTTCACATGAATGG+AGG | + | chr3.3:95104323-95104342 | MS.gene014262:CDS | 45.0% | |
| CTTCACATGAATGGAGGTGA+GGG | + | chr3.3:95104329-95104348 | MS.gene014262:CDS | 45.0% | |
| GATGAAGACACAAGAGCTGA+GGG | + | chr3.3:95106498-95106517 | MS.gene014262:CDS | 45.0% | |
| TGATGAAGACACAAGAGCTG+AGG | + | chr3.3:95106497-95106516 | MS.gene014262:CDS | 45.0% | |
| ! | GCTGACTTAGGTTGTTCATC+AGG | + | chr3.3:95104716-95104735 | MS.gene014262:CDS | 45.0% |
| ! | GGAACACCTGGGTCTTTTTA+TGG | + | chr3.3:95104944-95104963 | MS.gene014262:CDS | 45.0% |
| !! | TTTAAAAAAATTTATATAAG+CGG | - | chr3.3:95106043-95106062 | None:intergenic | 5.0% |
| !!! | TAACTTTTTTATAATATAAA+TGG | - | chr3.3:95104501-95104520 | None:intergenic | 5.0% |
| !!! | TTAATTTATTTTTTTTTGAA+AGG | - | chr3.3:95105989-95106008 | None:intergenic | 5.0% |
| ATCCTATTGCCCTACGTCTG+AGG | + | chr3.3:95106362-95106381 | MS.gene014262:CDS | 50.0% | |
| CCTCACCTCCATTCATGTGA+AGG | - | chr3.3:95104331-95104350 | None:intergenic | 50.0% | |
| CCTTCACATGAATGGAGGTG+AGG | + | chr3.3:95104328-95104347 | MS.gene014262:CDS | 50.0% | |
| TCAGACGTAGGGCAATAGGA+TGG | - | chr3.3:95106363-95106382 | None:intergenic | 50.0% | |
| TGGCATGGCACTCAATGACA+TGG | + | chr3.3:95105891-95105910 | MS.gene014262:CDS | 50.0% | |
| ! | GCAGAGAATGGTGATGCTGA+CGG | + | chr3.3:95104625-95104644 | MS.gene014262:intron | 50.0% |
| ! | TGCATGGGTTGTCATTGGCA+TGG | + | chr3.3:95105876-95105895 | MS.gene014262:CDS | 50.0% |
| !! | ATGCTTTTTGCACCGCTGGA+GGG | - | chr3.3:95105735-95105754 | None:intergenic | 50.0% |
| !! | TATGCTTTTTGCACCGCTGG+AGG | - | chr3.3:95105736-95105755 | None:intergenic | 50.0% |
| ACTCAATGACATGGCCGCAG+AGG | + | chr3.3:95105900-95105919 | MS.gene014262:CDS | 55.0% | |
| CGTTCGTCTGAACTGCTTCC+TGG | + | chr3.3:95105799-95105818 | MS.gene014262:CDS | 55.0% | |
| CTCCTCAGACGTAGGGCAAT+AGG | - | chr3.3:95106367-95106386 | None:intergenic | 55.0% | |
| GTTAGGACCATTGCACCACC+AGG | - | chr3.3:95105820-95105839 | None:intergenic | 55.0% | |
| TCGTCTGAACTGCTTCCTGG+TGG | + | chr3.3:95105802-95105821 | MS.gene014262:CDS | 55.0% | |
| ! | ACTGCTTCCTGGTGGTGCAA+TGG | + | chr3.3:95105810-95105829 | MS.gene014262:CDS | 55.0% |
| AACAAGGGCAAGCCCTCCAG+CGG | + | chr3.3:95105720-95105739 | MS.gene014262:CDS | 60.0% | |
| CTGGAGGGCTTGCCCTTGTT+AGG | - | chr3.3:95105720-95105739 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95104311 | 95106689 | 95104311 | ID=MS.gene014262 |
| chr3.3 | mRNA | 95104311 | 95106689 | 95104311 | ID=MS.gene014262.t1;Parent=MS.gene014262 |
| chr3.3 | exon | 95104311 | 95104385 | 95104311 | ID=MS.gene014262.t1.exon1;Parent=MS.gene014262.t1 |
| chr3.3 | CDS | 95104311 | 95104385 | 95104311 | ID=cds.MS.gene014262.t1;Parent=MS.gene014262.t1 |
| chr3.3 | exon | 95104629 | 95105033 | 95104629 | ID=MS.gene014262.t1.exon2;Parent=MS.gene014262.t1 |
| chr3.3 | CDS | 95104629 | 95105033 | 95104629 | ID=cds.MS.gene014262.t1;Parent=MS.gene014262.t1 |
| chr3.3 | exon | 95105664 | 95105921 | 95105664 | ID=MS.gene014262.t1.exon3;Parent=MS.gene014262.t1 |
| chr3.3 | CDS | 95105664 | 95105921 | 95105664 | ID=cds.MS.gene014262.t1;Parent=MS.gene014262.t1 |
| chr3.3 | exon | 95106321 | 95106689 | 95106321 | ID=MS.gene014262.t1.exon4;Parent=MS.gene014262.t1 |
| chr3.3 | CDS | 95106321 | 95106689 | 95106321 | ID=cds.MS.gene014262.t1;Parent=MS.gene014262.t1 |
| Gene Sequence |
| Protein sequence |
