Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02421.t1 | XP_003612068.1 | 93.2 | 381 | 22 | 2 | 1 | 377 | 1 | 381 | 8.70E-203 | 716.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02421.t1 | Q9SPV4 | 59.0 | 368 | 138 | 5 | 11 | 376 | 1 | 357 | 3.5e-120 | 433.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02421.t1 | B7FIK3 | 93.2 | 381 | 22 | 2 | 1 | 377 | 1 | 381 | 6.3e-203 | 716.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02421 | MS.gene049577 | PPI |
MS.gene02421 | MS.gene008450 | PPI |
MS.gene02421 | MS.gene033735 | PPI |
MS.gene02421 | MS.gene52303 | PPI |
MS.gene02421 | MS.gene76430 | PPI |
MS.gene024315 | MS.gene02421 | PPI |
MS.gene99450 | MS.gene02421 | PPI |
MS.gene010553 | MS.gene02421 | PPI |
MS.gene033748 | MS.gene02421 | PPI |
MS.gene02421 | MS.gene024299 | PPI |
MS.gene037613 | MS.gene02421 | PPI |
MS.gene014262 | MS.gene02421 | PPI |
MS.gene68203 | MS.gene02421 | PPI |
MS.gene024301 | MS.gene02421 | PPI |
MS.gene87476 | MS.gene02421 | PPI |
MS.gene02421 | MS.gene012028 | PPI |
MS.gene73290 | MS.gene02421 | PPI |
MS.gene02421 | MS.gene000556 | PPI |
MS.gene02421 | MS.gene033750 | PPI |
MS.gene012028 | MS.gene02421 | PPI |
MS.gene59406 | MS.gene02421 | PPI |
MS.gene02421 | MS.gene024314 | PPI |
MS.gene063148 | MS.gene02421 | PPI |
MS.gene02421 | MS.gene73369 | PPI |
MS.gene52320 | MS.gene02421 | PPI |
MS.gene033734 | MS.gene02421 | PPI |
MS.gene02421 | MS.gene25135 | PPI |
MS.gene07908 | MS.gene02421 | PPI |
MS.gene68796 | MS.gene02421 | PPI |
MS.gene64697 | MS.gene02421 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02421.t1 | MTR_5g020940 | 93.176 | 381 | 22 | 2 | 1 | 377 | 1 | 381 | 0.0 | 736 |
MS.gene02421.t1 | MTR_8g077040 | 69.565 | 368 | 109 | 1 | 11 | 375 | 1 | 368 | 0.0 | 555 |
MS.gene02421.t1 | MTR_3g467270 | 66.125 | 369 | 121 | 2 | 11 | 376 | 1 | 368 | 0.0 | 532 |
MS.gene02421.t1 | MTR_8g076900 | 63.388 | 366 | 129 | 1 | 11 | 376 | 1 | 361 | 6.64e-177 | 496 |
MS.gene02421.t1 | MTR_4g018820 | 62.670 | 367 | 129 | 1 | 11 | 377 | 1 | 359 | 2.98e-176 | 494 |
MS.gene02421.t1 | MTR_6g056070 | 61.035 | 367 | 131 | 2 | 11 | 376 | 1 | 356 | 1.50e-167 | 472 |
MS.gene02421.t1 | MTR_8g020700 | 58.967 | 368 | 139 | 2 | 11 | 377 | 1 | 357 | 5.83e-164 | 463 |
MS.gene02421.t1 | MTR_8g020690 | 59.128 | 367 | 141 | 3 | 11 | 376 | 1 | 359 | 8.33e-164 | 463 |
MS.gene02421.t1 | MTR_8g076900 | 66.531 | 245 | 82 | 0 | 11 | 255 | 1 | 245 | 2.42e-122 | 354 |
MS.gene02421.t1 | MTR_8g020700 | 62.353 | 255 | 95 | 1 | 11 | 264 | 1 | 255 | 4.90e-120 | 348 |
MS.gene02421.t1 | MTR_3g117060 | 42.932 | 382 | 188 | 4 | 11 | 376 | 1 | 368 | 6.03e-109 | 324 |
MS.gene02421.t1 | MTR_1g022465 | 46.073 | 382 | 185 | 8 | 11 | 376 | 1 | 377 | 2.03e-105 | 315 |
MS.gene02421.t1 | MTR_1g022455 | 45.812 | 382 | 187 | 7 | 11 | 376 | 1 | 378 | 9.59e-105 | 313 |
MS.gene02421.t1 | MTR_3g467560 | 43.968 | 373 | 191 | 5 | 11 | 375 | 25 | 387 | 5.86e-102 | 306 |
MS.gene02421.t1 | MTR_5g046110 | 40.220 | 363 | 200 | 2 | 6 | 362 | 56 | 407 | 1.60e-97 | 296 |
MS.gene02421.t1 | MTR_7g084620 | 40.483 | 373 | 204 | 7 | 11 | 375 | 1 | 363 | 5.11e-88 | 270 |
MS.gene02421.t1 | MTR_7g084350 | 38.753 | 369 | 214 | 4 | 13 | 375 | 1 | 363 | 2.02e-87 | 269 |
MS.gene02421.t1 | MTR_8g077030 | 53.881 | 219 | 79 | 2 | 11 | 229 | 1 | 197 | 1.66e-75 | 243 |
MS.gene02421.t1 | MTR_7g084330 | 36.478 | 318 | 171 | 6 | 64 | 375 | 39 | 331 | 3.76e-60 | 197 |
MS.gene02421.t1 | MTR_3g054330 | 34.530 | 362 | 202 | 10 | 9 | 350 | 8 | 354 | 1.68e-55 | 187 |
MS.gene02421.t1 | MTR_5g093900 | 31.726 | 394 | 226 | 12 | 9 | 374 | 11 | 389 | 4.57e-51 | 176 |
MS.gene02421.t1 | MTR_1g108660 | 35.119 | 336 | 160 | 12 | 38 | 351 | 11 | 310 | 9.39e-51 | 173 |
MS.gene02421.t1 | MTR_3g052700 | 32.895 | 380 | 217 | 11 | 9 | 365 | 11 | 375 | 1.25e-49 | 172 |
MS.gene02421.t1 | MTR_6g015620 | 32.500 | 120 | 81 | 0 | 257 | 376 | 18 | 137 | 9.34e-15 | 71.2 |
MS.gene02421.t1 | MTR_7g084340 | 29.545 | 132 | 86 | 2 | 247 | 375 | 2 | 129 | 4.60e-14 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02421.t1 | AT1G19640 | 46.612 | 369 | 175 | 6 | 11 | 357 | 1 | 369 | 6.07e-97 | 294 |
MS.gene02421.t1 | AT3G11480 | 41.304 | 368 | 195 | 6 | 15 | 376 | 27 | 379 | 6.86e-97 | 293 |
MS.gene02421.t1 | AT4G36470 | 40.992 | 383 | 197 | 6 | 10 | 377 | 3 | 371 | 8.75e-96 | 290 |
MS.gene02421.t1 | AT5G04370 | 41.713 | 362 | 199 | 4 | 17 | 376 | 39 | 390 | 1.01e-95 | 291 |
MS.gene02421.t1 | AT5G04370 | 41.713 | 362 | 199 | 4 | 17 | 376 | 58 | 409 | 1.88e-95 | 291 |
MS.gene02421.t1 | AT5G04370 | 41.713 | 362 | 199 | 4 | 17 | 376 | 44 | 395 | 1.98e-95 | 290 |
MS.gene02421.t1 | AT5G66430 | 40.220 | 363 | 203 | 5 | 19 | 376 | 1 | 354 | 2.47e-95 | 288 |
MS.gene02421.t1 | AT5G38020 | 41.667 | 372 | 200 | 5 | 16 | 376 | 3 | 368 | 2.92e-91 | 279 |
MS.gene02421.t1 | AT5G04380 | 38.564 | 376 | 215 | 5 | 6 | 376 | 25 | 389 | 4.66e-91 | 279 |
MS.gene02421.t1 | AT3G21950 | 40.591 | 372 | 204 | 5 | 16 | 376 | 3 | 368 | 1.76e-90 | 276 |
MS.gene02421.t1 | AT5G04380 | 38.298 | 376 | 209 | 6 | 6 | 376 | 21 | 378 | 5.05e-87 | 268 |
MS.gene02421.t1 | AT2G14060 | 39.678 | 373 | 216 | 5 | 9 | 376 | 4 | 372 | 1.49e-86 | 267 |
MS.gene02421.t1 | AT5G04380 | 40.000 | 320 | 183 | 3 | 58 | 376 | 7 | 318 | 5.03e-84 | 258 |
MS.gene02421.t1 | AT3G21950 | 37.129 | 404 | 205 | 6 | 16 | 376 | 3 | 400 | 1.27e-83 | 260 |
MS.gene02421.t1 | AT5G38020 | 41.641 | 329 | 176 | 4 | 58 | 376 | 7 | 329 | 2.16e-82 | 254 |
MS.gene02421.t1 | AT1G68040 | 36.364 | 352 | 186 | 9 | 13 | 350 | 7 | 334 | 9.33e-65 | 210 |
MS.gene02421.t1 | AT2G14060 | 42.128 | 235 | 132 | 2 | 9 | 242 | 4 | 235 | 1.64e-63 | 203 |
MS.gene02421.t1 | AT5G55250 | 34.181 | 354 | 211 | 8 | 11 | 350 | 13 | 358 | 2.01e-57 | 192 |
MS.gene02421.t1 | AT5G38100 | 35.262 | 363 | 191 | 11 | 19 | 366 | 10 | 343 | 3.41e-52 | 177 |
MS.gene02421.t1 | AT5G38100 | 36.508 | 315 | 159 | 10 | 64 | 366 | 35 | 320 | 9.98e-50 | 171 |
MS.gene02421.t1 | AT4G26420 | 33.425 | 362 | 210 | 10 | 8 | 351 | 2 | 350 | 1.33e-49 | 171 |
MS.gene02421.t1 | AT5G37970 | 33.514 | 370 | 199 | 11 | 15 | 366 | 6 | 346 | 1.45e-49 | 171 |
MS.gene02421.t1 | AT5G55250 | 33.645 | 321 | 191 | 8 | 44 | 350 | 8 | 320 | 4.63e-49 | 169 |
MS.gene02421.t1 | AT5G37990 | 33.423 | 371 | 198 | 14 | 15 | 366 | 6 | 346 | 5.38e-49 | 169 |
MS.gene02421.t1 | AT1G15125 | 33.428 | 353 | 192 | 12 | 19 | 356 | 1 | 325 | 1.63e-48 | 167 |
MS.gene02421.t1 | AT5G56300 | 30.184 | 381 | 237 | 10 | 4 | 370 | 9 | 374 | 3.66e-48 | 167 |
MS.gene02421.t1 | AT5G38780 | 32.873 | 362 | 199 | 11 | 15 | 358 | 6 | 341 | 1.42e-47 | 166 |
MS.gene02421.t1 | AT5G38780 | 33.010 | 309 | 167 | 9 | 64 | 358 | 10 | 292 | 5.05e-43 | 152 |
MS.gene02421.t1 | AT3G44840 | 30.769 | 338 | 200 | 7 | 19 | 348 | 7 | 318 | 3.01e-41 | 148 |
MS.gene02421.t1 | AT4G26420 | 37.768 | 233 | 127 | 7 | 8 | 230 | 2 | 226 | 3.94e-39 | 140 |
MS.gene02421.t1 | AT3G44860 | 32.476 | 311 | 188 | 7 | 19 | 320 | 7 | 304 | 1.80e-37 | 138 |
MS.gene02421.t1 | AT1G66720 | 31.488 | 289 | 170 | 8 | 19 | 294 | 9 | 282 | 5.56e-37 | 137 |
MS.gene02421.t1 | AT1G66700 | 29.070 | 344 | 201 | 12 | 19 | 348 | 9 | 323 | 3.42e-36 | 135 |
MS.gene02421.t1 | AT3G44870 | 32.095 | 296 | 153 | 8 | 19 | 294 | 7 | 274 | 3.63e-36 | 135 |
MS.gene02421.t1 | AT4G26420 | 38.288 | 222 | 119 | 8 | 19 | 230 | 1 | 214 | 4.53e-36 | 132 |
MS.gene02421.t1 | AT1G15125 | 33.858 | 254 | 141 | 9 | 19 | 259 | 1 | 240 | 7.93e-34 | 126 |
MS.gene02421.t1 | AT5G38100 | 38.249 | 217 | 112 | 5 | 19 | 223 | 10 | 216 | 1.83e-33 | 125 |
MS.gene02421.t1 | AT5G38100 | 38.249 | 217 | 112 | 5 | 19 | 223 | 10 | 216 | 1.85e-33 | 125 |
MS.gene02421.t1 | AT1G66690 | 29.870 | 308 | 166 | 9 | 11 | 294 | 1 | 282 | 4.34e-33 | 127 |
MS.gene02421.t1 | AT1G66700 | 34.259 | 216 | 117 | 7 | 19 | 223 | 9 | 210 | 9.35e-30 | 115 |
Find 68 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAAGAATGTTGCTATATT+TGG | 0.110287 | 5.3:+12073316 | MS.gene02421:CDS |
GCAGATTTGGGTTGTTCTTC+TGG | 0.117703 | 5.3:+12071527 | MS.gene02421:CDS |
TCGTATGGTTCTCACAATTT+TGG | 0.150346 | 5.3:+12073269 | MS.gene02421:CDS |
AAGGCTAGGTATTGCAGATT+TGG | 0.245681 | 5.3:+12071514 | MS.gene02421:CDS |
TTCATGAAGACTTGGTATTC+TGG | 0.260814 | 5.3:-12071626 | None:intergenic |
TTATTATTCTCTACACCTTT+AGG | 0.268964 | 5.3:-12073126 | None:intergenic |
CAGATTTGGGTTGTTCTTCT+GGG | 0.282637 | 5.3:+12071528 | MS.gene02421:CDS |
GAGACTCGTGATTATGTTCT+TGG | 0.286361 | 5.3:-12071604 | None:intergenic |
TTTGCAGTAGAGGTTCTTTA+TGG | 0.293086 | 5.3:-12071480 | None:intergenic |
TAAAGGTGTAGAGAATAATA+AGG | 0.308607 | 5.3:+12073128 | MS.gene02421:CDS |
TTTAGCTGATCGCATGTCTA+AGG | 0.327571 | 5.3:+12074242 | MS.gene02421:CDS |
ACTGCAAAACGTTCCCAAAA+AGG | 0.332500 | 5.3:+12071495 | MS.gene02421:CDS |
TCCATCAGAAGTAAAATTAG+AGG | 0.338597 | 5.3:+12074002 | MS.gene02421:CDS |
CAAAGAATGTTGCTATATTT+GGG | 0.351384 | 5.3:+12073317 | MS.gene02421:CDS |
AGGCTAGGTATTGCAGATTT+GGG | 0.357011 | 5.3:+12071515 | MS.gene02421:CDS |
GGCTGCAGCTGAACCTTTGT+TGG | 0.360677 | 5.3:+12074164 | MS.gene02421:CDS |
GATATCACAAACAAAGTGTT+TGG | 0.381129 | 5.3:-12071551 | None:intergenic |
TAAGCGTTGAGCACGTTTGC+GGG | 0.397564 | 5.3:-12073177 | None:intergenic |
TGCCCCATCAATAAGTGGTT+TGG | 0.408689 | 5.3:-12074118 | None:intergenic |
GTCATTCACTATTGATCGTC+TGG | 0.410501 | 5.3:+12074038 | MS.gene02421:CDS |
TTATCCAAACCACTTATTGA+TGG | 0.418082 | 5.3:+12074114 | MS.gene02421:CDS |
CCTTTGTTGGTCAGTCACTT+TGG | 0.420436 | 5.3:+12074177 | MS.gene02421:CDS |
CTCCACATGAATGGAGGAAC+TGG | 0.431401 | 5.3:+12071216 | MS.gene02421:CDS |
AATTATAATGGAGGAGCAAA+TGG | 0.437256 | 5.3:+12073948 | MS.gene02421:CDS |
ACAATGTCACAAATTGCATC+AGG | 0.442481 | 5.3:+12074142 | MS.gene02421:CDS |
TATCCAAACCACTTATTGAT+GGG | 0.442507 | 5.3:+12074115 | MS.gene02421:CDS |
TGCACTTAATGACATGGTCT+TGG | 0.443102 | 5.3:+12073353 | MS.gene02421:CDS |
GGTCATGTAGGGAATTATAA+TGG | 0.444602 | 5.3:+12073936 | MS.gene02421:intron |
ATTCCTCTTACAGCCTTCAA+TGG | 0.459080 | 5.3:+12071813 | MS.gene02421:CDS |
GTGATTACTTAGGTTCCTAA+AGG | 0.468002 | 5.3:+12073111 | MS.gene02421:intron |
CTATAGAGAATGAGTGAGGT+GGG | 0.488534 | 5.3:+12071159 | None:intergenic |
GTCTTCATGAATGATCTTCA+AGG | 0.490191 | 5.3:+12071638 | MS.gene02421:CDS |
TTGTATGCCCCATCAATAAG+TGG | 0.490776 | 5.3:-12074123 | None:intergenic |
CTCCAGTTCCTCCATTCATG+TGG | 0.493129 | 5.3:-12071218 | None:intergenic |
GATGAAGTGGAAGGTGGGAT+TGG | 0.497921 | 5.3:+12071716 | MS.gene02421:CDS |
AAAGGTGTAGAGAATAATAA+GGG | 0.504329 | 5.3:+12073129 | MS.gene02421:CDS |
ACTTAATGACATGGTCTTGG+AGG | 0.509131 | 5.3:+12073356 | MS.gene02421:CDS |
CAGCCTTCAATGGCTCTCAC+AGG | 0.521164 | 5.3:+12071823 | MS.gene02421:CDS |
ATAAGCGTTGAGCACGTTTG+CGG | 0.524587 | 5.3:-12073178 | None:intergenic |
TGCTGTTGCACTTAATGACA+TGG | 0.525913 | 5.3:+12073347 | MS.gene02421:CDS |
GTGCAGAAGAACTTGTTGAC+GGG | 0.527202 | 5.3:+12073244 | MS.gene02421:CDS |
AGAGAAACTAAATGATGAAG+TGG | 0.532950 | 5.3:+12071703 | MS.gene02421:CDS |
GAACAAGTACTCCACATGAA+TGG | 0.537606 | 5.3:+12071207 | MS.gene02421:CDS |
TAAATGATGAAGTGGAAGGT+GGG | 0.543127 | 5.3:+12071711 | MS.gene02421:CDS |
AGGTGGGGAAGAGAGAAACA+AGG | 0.549704 | 5.3:+12071175 | MS.gene02421:CDS |
GAGAGAAACAAGGATGAAAG+TGG | 0.553371 | 5.3:+12071185 | MS.gene02421:CDS |
CTAAATGATGAAGTGGAAGG+TGG | 0.560920 | 5.3:+12071710 | MS.gene02421:CDS |
ATCCAAACCACTTATTGATG+GGG | 0.561209 | 5.3:+12074116 | MS.gene02421:CDS |
GAGCCATTGAAGGCTGTAAG+AGG | 0.561556 | 5.3:-12071816 | None:intergenic |
TATAGAGAATGAGTGAGGTG+GGG | 0.564610 | 5.3:+12071160 | None:intergenic |
GAACCTGTGAGAGCCATTGA+AGG | 0.574051 | 5.3:-12071826 | None:intergenic |
GAAGATCATTCATGAAGACT+TGG | 0.574260 | 5.3:-12071634 | None:intergenic |
TGGAAGTAACAGAAGTACAT+TGG | 0.580245 | 5.3:+12074058 | MS.gene02421:CDS |
TCTTCATGAATGATCTTCAA+GGG | 0.587035 | 5.3:+12071639 | MS.gene02421:CDS |
CCAAAGTGACTGACCAACAA+AGG | 0.591313 | 5.3:-12074177 | None:intergenic |
CGTGCAGAAGAACTTGTTGA+CGG | 0.591341 | 5.3:+12073243 | MS.gene02421:CDS |
AAGCGTTGAGCACGTTTGCG+GGG | 0.600291 | 5.3:-12073176 | None:intergenic |
AAACTAAATGATGAAGTGGA+AGG | 0.604990 | 5.3:+12071707 | MS.gene02421:CDS |
TAATAAGGGTAACATTTACA+TGG | 0.606370 | 5.3:+12073143 | MS.gene02421:CDS |
ACTATAGAGAATGAGTGAGG+TGG | 0.610998 | 5.3:+12071158 | None:intergenic |
ATCCTGCCATAAAATGAACC+AGG | 0.626456 | 5.3:-12071761 | None:intergenic |
TGCAGAAGAACTTGTTGACG+GGG | 0.630200 | 5.3:+12073245 | MS.gene02421:CDS |
CAATGTCACAAATTGCATCA+GGG | 0.643382 | 5.3:+12074143 | MS.gene02421:CDS |
CAAGTACTCCACATGAATGG+AGG | 0.651462 | 5.3:+12071210 | MS.gene02421:CDS |
CATGTAGGGAATTATAATGG+AGG | 0.653703 | 5.3:+12073939 | MS.gene02421:intron |
AAAACTATAGAGAATGAGTG+AGG | 0.666058 | 5.3:+12071155 | None:intergenic |
GATGGAGATGGTGTGTACTG+AGG | 0.725953 | 5.3:-12073985 | None:intergenic |
GCAGAAGAACTTGTTGACGG+GGG | 0.729596 | 5.3:+12073246 | MS.gene02421:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAATTAAAAAAAATCATA+AGG | - | chr5.3:12072031-12072050 | None:intergenic | 10.0% |
!! | ATGAAAATATATAGTTATAA+TGG | + | chr5.3:12071874-12071893 | MS.gene02421:intron | 10.0% |
!! | TCTAAATTATAAAATAACAT+AGG | - | chr5.3:12073608-12073627 | None:intergenic | 10.0% |
!!! | AAAAATAAAGATAACTTTTA+TGG | + | chr5.3:12072793-12072812 | MS.gene02421:intron | 10.0% |
!!! | AATTACGAAAATATTTTTAT+TGG | + | chr5.3:12073915-12073934 | MS.gene02421:intron | 10.0% |
!! | AAAATAGGTTTAATCTATAA+AGG | - | chr5.3:12073545-12073564 | None:intergenic | 15.0% |
!! | AAATAGGTTTAATCTATAAA+GGG | - | chr5.3:12073544-12073563 | None:intergenic | 15.0% |
!! | AAGAATATTCAAGAAAATTT+CGG | - | chr5.3:12073879-12073898 | None:intergenic | 15.0% |
!! | ATTTAGACTAACTTAATATA+GGG | - | chr5.3:12072435-12072454 | None:intergenic | 15.0% |
!! | CAATAAAAGTAACAAAAATT+TGG | - | chr5.3:12072205-12072224 | None:intergenic | 15.0% |
!! | TAAATTATATTGTGTGAAAT+CGG | + | chr5.3:12072871-12072890 | MS.gene02421:intron | 15.0% |
!!! | ATATTTAGAACAAAAAAAGT+GGG | + | chr5.3:12072159-12072178 | MS.gene02421:intron | 15.0% |
!!! | GAATAAATGTTTTAATAAAG+AGG | - | chr5.3:12073679-12073698 | None:intergenic | 15.0% |
!!! | TAAAATAATTGCTATTTGTT+TGG | + | chr5.3:12073089-12073108 | MS.gene02421:intron | 15.0% |
!!! | TTCATAAATAAGAGTATTAT+TGG | - | chr5.3:12071859-12071878 | None:intergenic | 15.0% |
!! | ACATGATGAACAAATAATAA+GGG | + | chr5.3:12071918-12071937 | MS.gene02421:intron | 20.0% |
!! | CATTTAGACTAACTTAATAT+AGG | - | chr5.3:12072436-12072455 | None:intergenic | 20.0% |
!!! | AAAAACAAAAGATGTGTTTT+GGG | - | chr5.3:12073030-12073049 | None:intergenic | 20.0% |
!!! | AATATTTTTATTGGTCATGT+AGG | + | chr5.3:12073924-12073943 | MS.gene02421:intron | 20.0% |
!!! | ATATTTTATTACCTGAACTA+AGG | - | chr5.3:12071265-12071284 | None:intergenic | 20.0% |
!!! | ATATTTTTATTGGTCATGTA+GGG | + | chr5.3:12073925-12073944 | MS.gene02421:intron | 20.0% |
!!! | ATGATTTCAACAACATTTTT+AGG | + | chr5.3:12071663-12071682 | MS.gene02421:CDS | 20.0% |
!!! | ATGCAATTTTTATTTGTATC+CGG | + | chr5.3:12072640-12072659 | MS.gene02421:intron | 20.0% |
!!! | ATTTTATATGGTACAGAAAA+AGG | + | chr5.3:12071424-12071443 | MS.gene02421:intron | 20.0% |
!!! | CATATTTAGAACAAAAAAAG+TGG | + | chr5.3:12072158-12072177 | MS.gene02421:intron | 20.0% |
!!! | GAGTATTTTATAAACTTGTT+TGG | + | chr5.3:12073449-12073468 | MS.gene02421:intron | 20.0% |
!!! | GTGTATTTACAACTTTTTTT+AGG | - | chr5.3:12071900-12071919 | None:intergenic | 20.0% |
!!! | TAAAAACAAAAGATGTGTTT+TGG | - | chr5.3:12073031-12073050 | None:intergenic | 20.0% |
!!! | TAAATAAGAGTATTATTGGT+AGG | - | chr5.3:12071855-12071874 | None:intergenic | 20.0% |
!!! | TCTTTTGTTTTTAAATTGCT+AGG | + | chr5.3:12073038-12073057 | MS.gene02421:intron | 20.0% |
!!! | TTTTACATTTAAGAAAAGTC+TGG | + | chr5.3:12073817-12073836 | MS.gene02421:intron | 20.0% |
!!! | TTTTATATGGTACAGAAAAA+GGG | + | chr5.3:12071425-12071444 | MS.gene02421:intron | 20.0% |
! | AATCTTGGATTACTAATTGA+TGG | + | chr5.3:12073840-12073859 | MS.gene02421:intron | 25.0% |
! | ACCTAAAAAATAAGTGATAG+AGG | + | chr5.3:12072954-12072973 | MS.gene02421:intron | 25.0% |
! | AGTTCATTAAAGACGAAAAA+TGG | + | chr5.3:12073727-12073746 | MS.gene02421:intron | 25.0% |
! | CAAAAAGTTGAAACTTCATA+AGG | + | chr5.3:12072268-12072287 | MS.gene02421:intron | 25.0% |
! | CAAAGAATGTTGCTATATTT+GGG | + | chr5.3:12073317-12073336 | MS.gene02421:CDS | 25.0% |
! | CACATGATGAACAAATAATA+AGG | + | chr5.3:12071917-12071936 | MS.gene02421:intron | 25.0% |
! | CATAGACTAAAATTGTTTGT+TGG | - | chr5.3:12072101-12072120 | None:intergenic | 25.0% |
! | TAAAACCTAAGTTATTGTTG+TGG | - | chr5.3:12072542-12072561 | None:intergenic | 25.0% |
! | TAATAAGGGTAACATTTACA+TGG | + | chr5.3:12073143-12073162 | MS.gene02421:CDS | 25.0% |
! | TATAGATGTAAGACATAGAA+GGG | - | chr5.3:12073774-12073793 | None:intergenic | 25.0% |
! | TTATTATTCTCTACACCTTT+AGG | - | chr5.3:12073129-12073148 | None:intergenic | 25.0% |
!! | AAACTCATTTTCAAACTGTA+TGG | - | chr5.3:12072903-12072922 | None:intergenic | 25.0% |
!! | AAAGGTGTAGAGAATAATAA+GGG | + | chr5.3:12073129-12073148 | MS.gene02421:CDS | 25.0% |
!! | ATTGGTCAAATCTTTTTCTA+TGG | + | chr5.3:12071734-12071753 | MS.gene02421:CDS | 25.0% |
!! | CTTACGATGAAGATTTTATA+TGG | + | chr5.3:12071412-12071431 | MS.gene02421:intron | 25.0% |
!! | GGGATACTATTTAATTTATG+AGG | - | chr5.3:12073010-12073029 | None:intergenic | 25.0% |
!! | TAAAGGTGTAGAGAATAATA+AGG | + | chr5.3:12073128-12073147 | MS.gene02421:CDS | 25.0% |
!! | TATTTGTTTGGTGATTACTT+AGG | + | chr5.3:12073101-12073120 | MS.gene02421:intron | 25.0% |
!! | TTGAAAATGAGTTTTGCATA+AGG | + | chr5.3:12072909-12072928 | MS.gene02421:intron | 25.0% |
!! | TTGGTCAAATCTTTTTCTAT+GGG | + | chr5.3:12071735-12071754 | MS.gene02421:CDS | 25.0% |
!! | TTTTATGTTCCAATAGCTTT+TGG | + | chr5.3:12072574-12072593 | MS.gene02421:intron | 25.0% |
!!! | AAATTAGAGGTTTTGAAAGA+AGG | + | chr5.3:12074015-12074034 | MS.gene02421:CDS | 25.0% |
!!! | AATTAGAGGTTTTGAAAGAA+GGG | + | chr5.3:12074016-12074035 | MS.gene02421:CDS | 25.0% |
!!! | ATGAAATGCATTGTTTTTGT+TGG | - | chr5.3:12071791-12071810 | None:intergenic | 25.0% |
!!! | TATTCTTGATAACGTTGTAA+AGG | + | chr5.3:12073892-12073911 | MS.gene02421:intron | 25.0% |
!!! | TCCTCTATCACTTATTTTTT+AGG | - | chr5.3:12072958-12072977 | None:intergenic | 25.0% |
!!! | TTACGTGTGATCTTTTTTAT+GGG | - | chr5.3:12071305-12071324 | None:intergenic | 25.0% |
!!! | TTTACGTGTGATCTTTTTTA+TGG | - | chr5.3:12071306-12071325 | None:intergenic | 25.0% |
!!! | TTTTTTAGGTGAAATCCATA+TGG | - | chr5.3:12072944-12072963 | None:intergenic | 25.0% |
AAACTAAATGATGAAGTGGA+AGG | + | chr5.3:12071707-12071726 | MS.gene02421:CDS | 30.0% | |
AGAGAAACTAAATGATGAAG+TGG | + | chr5.3:12071703-12071722 | MS.gene02421:CDS | 30.0% | |
ATAGATGTAAGACATAGAAG+GGG | - | chr5.3:12073773-12073792 | None:intergenic | 30.0% | |
CAATATCTGTTACAAACACA+AGG | - | chr5.3:12072689-12072708 | None:intergenic | 30.0% | |
CTATAGATGTAAGACATAGA+AGG | - | chr5.3:12073775-12073794 | None:intergenic | 30.0% | |
GAGCGAATTATCAACTTATA+AGG | + | chr5.3:12073402-12073421 | MS.gene02421:intron | 30.0% | |
GCAAAGAATGTTGCTATATT+TGG | + | chr5.3:12073316-12073335 | MS.gene02421:CDS | 30.0% | |
TATCCAAACCACTTATTGAT+GGG | + | chr5.3:12074115-12074134 | MS.gene02421:CDS | 30.0% | |
TCAAATTTCTTGACATAGAC+AGG | + | chr5.3:12072486-12072505 | MS.gene02421:intron | 30.0% | |
TCATGAAAACCAAAAGCTAT+TGG | - | chr5.3:12072586-12072605 | None:intergenic | 30.0% | |
TCCATCAGAAGTAAAATTAG+AGG | + | chr5.3:12074002-12074021 | MS.gene02421:CDS | 30.0% | |
TCTTCATGAATGATCTTCAA+GGG | + | chr5.3:12071639-12071658 | MS.gene02421:CDS | 30.0% | |
TTATCCAAACCACTTATTGA+TGG | + | chr5.3:12074114-12074133 | MS.gene02421:CDS | 30.0% | |
TTCAAAAAACTCCTTAGTTC+AGG | + | chr5.3:12071251-12071270 | MS.gene02421:CDS | 30.0% | |
! | AAAATGAGTTTTGCATAAGG+TGG | + | chr5.3:12072912-12072931 | MS.gene02421:intron | 30.0% |
! | AATTATAATGGAGGAGCAAA+TGG | + | chr5.3:12073948-12073967 | MS.gene02421:CDS | 30.0% |
! | AATTTTACTTCTGATGGAGA+TGG | - | chr5.3:12074000-12074019 | None:intergenic | 30.0% |
! | ACCTCTAATTTTACTTCTGA+TGG | - | chr5.3:12074006-12074025 | None:intergenic | 30.0% |
! | GATATCACAAACAAAGTGTT+TGG | - | chr5.3:12071554-12071573 | None:intergenic | 30.0% |
! | GCAGCTACATAATCATATTT+TGG | + | chr5.3:12072290-12072309 | MS.gene02421:intron | 30.0% |
! | GCTATCATTGAAGAAGTTTT+TGG | + | chr5.3:12074204-12074223 | MS.gene02421:CDS | 30.0% |
! | GTTTGTTGGATAATTTCGTA+GGG | - | chr5.3:12072087-12072106 | None:intergenic | 30.0% |
! | TGGTCAAATCTTTTTCTATG+GGG | + | chr5.3:12071736-12071755 | MS.gene02421:CDS | 30.0% |
! | TGTTTGTTGGATAATTTCGT+AGG | - | chr5.3:12072088-12072107 | None:intergenic | 30.0% |
! | TTAAGAAAAGTCTGGAATCT+TGG | + | chr5.3:12073825-12073844 | MS.gene02421:intron | 30.0% |
!! | CAATTTTTATTTGTATCCGG+TGG | + | chr5.3:12072643-12072662 | MS.gene02421:intron | 30.0% |
!! | TAAGAGTATTATTGGTAGGA+TGG | - | chr5.3:12071851-12071870 | None:intergenic | 30.0% |
!! | TGTTTTTAAATTGCTAGGAG+TGG | + | chr5.3:12073043-12073062 | MS.gene02421:intron | 30.0% |
!!! | CTTTTGGTTTTCATGATTGA+TGG | + | chr5.3:12072590-12072609 | MS.gene02421:intron | 30.0% |
AAATGTAAAAGAGATGCACC+AGG | - | chr5.3:12073807-12073826 | None:intergenic | 35.0% | |
AATGTAAAAGAGATGCACCA+GGG | - | chr5.3:12073806-12073825 | None:intergenic | 35.0% | |
ACAATGTCACAAATTGCATC+AGG | + | chr5.3:12074142-12074161 | MS.gene02421:CDS | 35.0% | |
ATCCAAACCACTTATTGATG+GGG | + | chr5.3:12074116-12074135 | MS.gene02421:CDS | 35.0% | |
CAATGTCACAAATTGCATCA+GGG | + | chr5.3:12074143-12074162 | MS.gene02421:CDS | 35.0% | |
CACATCCACAACAATAACTT+AGG | + | chr5.3:12072534-12072553 | MS.gene02421:intron | 35.0% | |
CATGTAGGGAATTATAATGG+AGG | + | chr5.3:12073939-12073958 | MS.gene02421:intron | 35.0% | |
CTAAGTTATTGTTGTGGATG+TGG | - | chr5.3:12072536-12072555 | None:intergenic | 35.0% | |
GAAGATCATTCATGAAGACT+TGG | - | chr5.3:12071637-12071656 | None:intergenic | 35.0% | |
GGTCATGTAGGGAATTATAA+TGG | + | chr5.3:12073936-12073955 | MS.gene02421:intron | 35.0% | |
GTCTTCATGAATGATCTTCA+AGG | + | chr5.3:12071638-12071657 | MS.gene02421:CDS | 35.0% | |
GTGATTACTTAGGTTCCTAA+AGG | + | chr5.3:12073111-12073130 | MS.gene02421:intron | 35.0% | |
TAAATGATGAAGTGGAAGGT+GGG | + | chr5.3:12071711-12071730 | MS.gene02421:CDS | 35.0% | |
TTGGTCAAACAAGATGTGTT+TGG | + | chr5.3:12073468-12073487 | MS.gene02421:intron | 35.0% | |
TTTGCAGTAGAGGTTCTTTA+TGG | - | chr5.3:12071483-12071502 | None:intergenic | 35.0% | |
! | ACTTTTAGCATACATGTGCA+GGG | + | chr5.3:12072720-12072739 | MS.gene02421:intron | 35.0% |
! | CGTATGGTTCTCACAATTTT+GGG | + | chr5.3:12073270-12073289 | MS.gene02421:CDS | 35.0% |
! | TCGTATGGTTCTCACAATTT+TGG | + | chr5.3:12073269-12073288 | MS.gene02421:CDS | 35.0% |
! | TGGAAGTAACAGAAGTACAT+TGG | + | chr5.3:12074058-12074077 | MS.gene02421:CDS | 35.0% |
! | TTCATGAAGACTTGGTATTC+TGG | - | chr5.3:12071629-12071648 | None:intergenic | 35.0% |
!! | TTTTTATTTGTATCCGGTGG+TGG | + | chr5.3:12072646-12072665 | MS.gene02421:intron | 35.0% |
AAAACGTTCCCAAAAAGGCT+AGG | + | chr5.3:12071500-12071519 | MS.gene02421:CDS | 40.0% | |
ACTGCAAAACGTTCCCAAAA+AGG | + | chr5.3:12071495-12071514 | MS.gene02421:CDS | 40.0% | |
ATAAGGTGGTGAGATCCATA+TGG | + | chr5.3:12072926-12072945 | MS.gene02421:intron | 40.0% | |
ATCCTGCCATAAAATGAACC+AGG | - | chr5.3:12071764-12071783 | None:intergenic | 40.0% | |
ATTCCTCTTACAGCCTTCAA+TGG | + | chr5.3:12071813-12071832 | MS.gene02421:CDS | 40.0% | |
ATTGCATGACGTCCATACAA+AGG | - | chr5.3:12072627-12072646 | None:intergenic | 40.0% | |
CAGGTCATCAACAAACTCAA+TGG | + | chr5.3:12072505-12072524 | MS.gene02421:intron | 40.0% | |
CTAAATGATGAAGTGGAAGG+TGG | + | chr5.3:12071710-12071729 | MS.gene02421:CDS | 40.0% | |
GAACAAGTACTCCACATGAA+TGG | + | chr5.3:12071207-12071226 | MS.gene02421:CDS | 40.0% | |
GAGACTCGTGATTATGTTCT+TGG | - | chr5.3:12071607-12071626 | None:intergenic | 40.0% | |
GAGAGAAACAAGGATGAAAG+TGG | + | chr5.3:12071185-12071204 | MS.gene02421:CDS | 40.0% | |
GTCATTCACTATTGATCGTC+TGG | + | chr5.3:12074038-12074057 | MS.gene02421:CDS | 40.0% | |
TGCACTTAATGACATGGTCT+TGG | + | chr5.3:12073353-12073372 | MS.gene02421:CDS | 40.0% | |
TGCTGTTGCACTTAATGACA+TGG | + | chr5.3:12073347-12073366 | MS.gene02421:CDS | 40.0% | |
TTGTATGCCCCATCAATAAG+TGG | - | chr5.3:12074126-12074145 | None:intergenic | 40.0% | |
TTTAGCTGATCGCATGTCTA+AGG | + | chr5.3:12074242-12074261 | MS.gene02421:CDS | 40.0% | |
! | AAGGCTAGGTATTGCAGATT+TGG | + | chr5.3:12071514-12071533 | MS.gene02421:CDS | 40.0% |
! | ACTTAATGACATGGTCTTGG+AGG | + | chr5.3:12073356-12073375 | MS.gene02421:CDS | 40.0% |
! | AGGCTAGGTATTGCAGATTT+GGG | + | chr5.3:12071515-12071534 | MS.gene02421:CDS | 40.0% |
! | CACTTTTAGCATACATGTGC+AGG | + | chr5.3:12072719-12072738 | MS.gene02421:intron | 40.0% |
! | CATCTATAGTCTTTTTGCCC+TGG | + | chr5.3:12073786-12073805 | MS.gene02421:intron | 40.0% |
! | TAACATAGGCTAGTTCTCAG+TGG | - | chr5.3:12073594-12073613 | None:intergenic | 40.0% |
!! | CAGATTTGGGTTGTTCTTCT+GGG | + | chr5.3:12071528-12071547 | MS.gene02421:CDS | 40.0% |
!! | CTGCAATACCTAGCCTTTTT+GGG | - | chr5.3:12071511-12071530 | None:intergenic | 40.0% |
!! | TCTGCAATACCTAGCCTTTT+TGG | - | chr5.3:12071512-12071531 | None:intergenic | 40.0% |
ATGACGTCCATACAAAGGAG+TGG | - | chr5.3:12072622-12072641 | None:intergenic | 45.0% | |
CAAGTACTCCACATGAATGG+AGG | + | chr5.3:12071210-12071229 | MS.gene02421:CDS | 45.0% | |
CCAAAGTGACTGACCAACAA+AGG | - | chr5.3:12074180-12074199 | None:intergenic | 45.0% | |
CCTTTGTTGGTCAGTCACTT+TGG | + | chr5.3:12074177-12074196 | MS.gene02421:CDS | 45.0% | |
GAGACATCCACTCCTTTGTA+TGG | + | chr5.3:12072612-12072631 | MS.gene02421:intron | 45.0% | |
TGCCCCATCAATAAGTGGTT+TGG | - | chr5.3:12074121-12074140 | None:intergenic | 45.0% | |
! | AACACAAGGCACCTATCAGA+AGG | - | chr5.3:12072675-12072694 | None:intergenic | 45.0% |
! | ATCTTTTTCTATGGGGCTCC+TGG | + | chr5.3:12071743-12071762 | MS.gene02421:CDS | 45.0% |
! | CTCCTGGTTCATTTTATGGC+AGG | + | chr5.3:12071759-12071778 | MS.gene02421:CDS | 45.0% |
! | TTGGGAACGTTTTGCAGTAG+AGG | - | chr5.3:12071493-12071512 | None:intergenic | 45.0% |
!! | ATAAGCGTTGAGCACGTTTG+CGG | - | chr5.3:12073181-12073200 | None:intergenic | 45.0% |
!! | CGTGCAGAAGAACTTGTTGA+CGG | + | chr5.3:12073243-12073262 | MS.gene02421:CDS | 45.0% |
!! | GCAGATTTGGGTTGTTCTTC+TGG | + | chr5.3:12071527-12071546 | MS.gene02421:CDS | 45.0% |
!! | GTGCAGAAGAACTTGTTGAC+GGG | + | chr5.3:12073244-12073263 | MS.gene02421:CDS | 45.0% |
!! | TGCAGAAGAACTTGTTGACG+GGG | + | chr5.3:12073245-12073264 | MS.gene02421:CDS | 45.0% |
!! | TTATAATTGTTTAAAAAAAT+AGG | - | chr5.3:12073560-12073579 | None:intergenic | 5.0% |
!!! | AAATAAATTGTTTTTATTTT+TGG | + | chr5.3:12071988-12072007 | MS.gene02421:intron | 5.0% |
!!! | AATAAATTGTTTTTATTTTT+GGG | + | chr5.3:12071989-12072008 | MS.gene02421:intron | 5.0% |
AGGTGGGGAAGAGAGAAACA+AGG | + | chr5.3:12071175-12071194 | MS.gene02421:CDS | 50.0% | |
CTCCACATGAATGGAGGAAC+TGG | + | chr5.3:12071216-12071235 | MS.gene02421:CDS | 50.0% | |
CTCCAGTTCCTCCATTCATG+TGG | - | chr5.3:12071221-12071240 | None:intergenic | 50.0% | |
GAACCTGTGAGAGCCATTGA+AGG | - | chr5.3:12071829-12071848 | None:intergenic | 50.0% | |
GAGCCATTGAAGGCTGTAAG+AGG | - | chr5.3:12071819-12071838 | None:intergenic | 50.0% | |
GATGAAGTGGAAGGTGGGAT+TGG | + | chr5.3:12071716-12071735 | MS.gene02421:CDS | 50.0% | |
GATGGAGATGGTGTGTACTG+AGG | - | chr5.3:12073988-12074007 | None:intergenic | 50.0% | |
TATCAGAAGGATGCCACCAC+CGG | - | chr5.3:12072662-12072681 | None:intergenic | 50.0% | |
! | GGGGCTCCTGGTTCATTTTA+TGG | + | chr5.3:12071755-12071774 | MS.gene02421:CDS | 50.0% |
!! | GCAGAAGAACTTGTTGACGG+GGG | + | chr5.3:12073246-12073265 | MS.gene02421:CDS | 50.0% |
!! | TAAGCGTTGAGCACGTTTGC+GGG | - | chr5.3:12073180-12073199 | None:intergenic | 50.0% |
CAGCCTTCAATGGCTCTCAC+AGG | + | chr5.3:12071823-12071842 | MS.gene02421:CDS | 55.0% | |
GGCTGCAGCTGAACCTTTGT+TGG | + | chr5.3:12074164-12074183 | MS.gene02421:CDS | 55.0% | |
! | ACTTGTTGACGGGGGTCGTA+TGG | + | chr5.3:12073254-12073273 | MS.gene02421:CDS | 55.0% |
! | GGTGGTGGCATCCTTCTGAT+AGG | + | chr5.3:12072661-12072680 | MS.gene02421:intron | 55.0% |
!! | AAGCGTTGAGCACGTTTGCG+GGG | - | chr5.3:12073179-12073198 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 12071168 | 12074314 | 12071168 | ID=MS.gene02421 |
chr5.3 | mRNA | 12071168 | 12074314 | 12071168 | ID=MS.gene02421.t1;Parent=MS.gene02421 |
chr5.3 | exon | 12071168 | 12071272 | 12071168 | ID=MS.gene02421.t1.exon1;Parent=MS.gene02421.t1 |
chr5.3 | CDS | 12071168 | 12071272 | 12071168 | ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1 |
chr5.3 | exon | 12071440 | 12071844 | 12071440 | ID=MS.gene02421.t1.exon2;Parent=MS.gene02421.t1 |
chr5.3 | CDS | 12071440 | 12071844 | 12071440 | ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1 |
chr5.3 | exon | 12073123 | 12073377 | 12073123 | ID=MS.gene02421.t1.exon3;Parent=MS.gene02421.t1 |
chr5.3 | CDS | 12073123 | 12073377 | 12073123 | ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1 |
chr5.3 | exon | 12073946 | 12074314 | 12073946 | ID=MS.gene02421.t1.exon4;Parent=MS.gene02421.t1 |
chr5.3 | CDS | 12073946 | 12074314 | 12073946 | ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1 |
Gene Sequence |
Protein sequence |