AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02421


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02421.t1 MTR_5g020940 93.176 381 22 2 1 377 1 381 0.0 736
MS.gene02421.t1 MTR_8g077040 69.565 368 109 1 11 375 1 368 0.0 555
MS.gene02421.t1 MTR_3g467270 66.125 369 121 2 11 376 1 368 0.0 532
MS.gene02421.t1 MTR_8g076900 63.388 366 129 1 11 376 1 361 6.64e-177 496
MS.gene02421.t1 MTR_4g018820 62.670 367 129 1 11 377 1 359 2.98e-176 494
MS.gene02421.t1 MTR_6g056070 61.035 367 131 2 11 376 1 356 1.50e-167 472
MS.gene02421.t1 MTR_8g020700 58.967 368 139 2 11 377 1 357 5.83e-164 463
MS.gene02421.t1 MTR_8g020690 59.128 367 141 3 11 376 1 359 8.33e-164 463
MS.gene02421.t1 MTR_8g076900 66.531 245 82 0 11 255 1 245 2.42e-122 354
MS.gene02421.t1 MTR_8g020700 62.353 255 95 1 11 264 1 255 4.90e-120 348
MS.gene02421.t1 MTR_3g117060 42.932 382 188 4 11 376 1 368 6.03e-109 324
MS.gene02421.t1 MTR_1g022465 46.073 382 185 8 11 376 1 377 2.03e-105 315
MS.gene02421.t1 MTR_1g022455 45.812 382 187 7 11 376 1 378 9.59e-105 313
MS.gene02421.t1 MTR_3g467560 43.968 373 191 5 11 375 25 387 5.86e-102 306
MS.gene02421.t1 MTR_5g046110 40.220 363 200 2 6 362 56 407 1.60e-97 296
MS.gene02421.t1 MTR_7g084620 40.483 373 204 7 11 375 1 363 5.11e-88 270
MS.gene02421.t1 MTR_7g084350 38.753 369 214 4 13 375 1 363 2.02e-87 269
MS.gene02421.t1 MTR_8g077030 53.881 219 79 2 11 229 1 197 1.66e-75 243
MS.gene02421.t1 MTR_7g084330 36.478 318 171 6 64 375 39 331 3.76e-60 197
MS.gene02421.t1 MTR_3g054330 34.530 362 202 10 9 350 8 354 1.68e-55 187
MS.gene02421.t1 MTR_5g093900 31.726 394 226 12 9 374 11 389 4.57e-51 176
MS.gene02421.t1 MTR_1g108660 35.119 336 160 12 38 351 11 310 9.39e-51 173
MS.gene02421.t1 MTR_3g052700 32.895 380 217 11 9 365 11 375 1.25e-49 172
MS.gene02421.t1 MTR_6g015620 32.500 120 81 0 257 376 18 137 9.34e-15 71.2
MS.gene02421.t1 MTR_7g084340 29.545 132 86 2 247 375 2 129 4.60e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02421.t1 AT1G19640 46.612 369 175 6 11 357 1 369 6.07e-97 294
MS.gene02421.t1 AT3G11480 41.304 368 195 6 15 376 27 379 6.86e-97 293
MS.gene02421.t1 AT4G36470 40.992 383 197 6 10 377 3 371 8.75e-96 290
MS.gene02421.t1 AT5G04370 41.713 362 199 4 17 376 39 390 1.01e-95 291
MS.gene02421.t1 AT5G04370 41.713 362 199 4 17 376 58 409 1.88e-95 291
MS.gene02421.t1 AT5G04370 41.713 362 199 4 17 376 44 395 1.98e-95 290
MS.gene02421.t1 AT5G66430 40.220 363 203 5 19 376 1 354 2.47e-95 288
MS.gene02421.t1 AT5G38020 41.667 372 200 5 16 376 3 368 2.92e-91 279
MS.gene02421.t1 AT5G04380 38.564 376 215 5 6 376 25 389 4.66e-91 279
MS.gene02421.t1 AT3G21950 40.591 372 204 5 16 376 3 368 1.76e-90 276
MS.gene02421.t1 AT5G04380 38.298 376 209 6 6 376 21 378 5.05e-87 268
MS.gene02421.t1 AT2G14060 39.678 373 216 5 9 376 4 372 1.49e-86 267
MS.gene02421.t1 AT5G04380 40.000 320 183 3 58 376 7 318 5.03e-84 258
MS.gene02421.t1 AT3G21950 37.129 404 205 6 16 376 3 400 1.27e-83 260
MS.gene02421.t1 AT5G38020 41.641 329 176 4 58 376 7 329 2.16e-82 254
MS.gene02421.t1 AT1G68040 36.364 352 186 9 13 350 7 334 9.33e-65 210
MS.gene02421.t1 AT2G14060 42.128 235 132 2 9 242 4 235 1.64e-63 203
MS.gene02421.t1 AT5G55250 34.181 354 211 8 11 350 13 358 2.01e-57 192
MS.gene02421.t1 AT5G38100 35.262 363 191 11 19 366 10 343 3.41e-52 177
MS.gene02421.t1 AT5G38100 36.508 315 159 10 64 366 35 320 9.98e-50 171
MS.gene02421.t1 AT4G26420 33.425 362 210 10 8 351 2 350 1.33e-49 171
MS.gene02421.t1 AT5G37970 33.514 370 199 11 15 366 6 346 1.45e-49 171
MS.gene02421.t1 AT5G55250 33.645 321 191 8 44 350 8 320 4.63e-49 169
MS.gene02421.t1 AT5G37990 33.423 371 198 14 15 366 6 346 5.38e-49 169
MS.gene02421.t1 AT1G15125 33.428 353 192 12 19 356 1 325 1.63e-48 167
MS.gene02421.t1 AT5G56300 30.184 381 237 10 4 370 9 374 3.66e-48 167
MS.gene02421.t1 AT5G38780 32.873 362 199 11 15 358 6 341 1.42e-47 166
MS.gene02421.t1 AT5G38780 33.010 309 167 9 64 358 10 292 5.05e-43 152
MS.gene02421.t1 AT3G44840 30.769 338 200 7 19 348 7 318 3.01e-41 148
MS.gene02421.t1 AT4G26420 37.768 233 127 7 8 230 2 226 3.94e-39 140
MS.gene02421.t1 AT3G44860 32.476 311 188 7 19 320 7 304 1.80e-37 138
MS.gene02421.t1 AT1G66720 31.488 289 170 8 19 294 9 282 5.56e-37 137
MS.gene02421.t1 AT1G66700 29.070 344 201 12 19 348 9 323 3.42e-36 135
MS.gene02421.t1 AT3G44870 32.095 296 153 8 19 294 7 274 3.63e-36 135
MS.gene02421.t1 AT4G26420 38.288 222 119 8 19 230 1 214 4.53e-36 132
MS.gene02421.t1 AT1G15125 33.858 254 141 9 19 259 1 240 7.93e-34 126
MS.gene02421.t1 AT5G38100 38.249 217 112 5 19 223 10 216 1.83e-33 125
MS.gene02421.t1 AT5G38100 38.249 217 112 5 19 223 10 216 1.85e-33 125
MS.gene02421.t1 AT1G66690 29.870 308 166 9 11 294 1 282 4.34e-33 127
MS.gene02421.t1 AT1G66700 34.259 216 117 7 19 223 9 210 9.35e-30 115

Find 68 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGAATGTTGCTATATT+TGG 0.110287 5.3:+12073316 MS.gene02421:CDS
GCAGATTTGGGTTGTTCTTC+TGG 0.117703 5.3:+12071527 MS.gene02421:CDS
TCGTATGGTTCTCACAATTT+TGG 0.150346 5.3:+12073269 MS.gene02421:CDS
AAGGCTAGGTATTGCAGATT+TGG 0.245681 5.3:+12071514 MS.gene02421:CDS
TTCATGAAGACTTGGTATTC+TGG 0.260814 5.3:-12071626 None:intergenic
TTATTATTCTCTACACCTTT+AGG 0.268964 5.3:-12073126 None:intergenic
CAGATTTGGGTTGTTCTTCT+GGG 0.282637 5.3:+12071528 MS.gene02421:CDS
GAGACTCGTGATTATGTTCT+TGG 0.286361 5.3:-12071604 None:intergenic
TTTGCAGTAGAGGTTCTTTA+TGG 0.293086 5.3:-12071480 None:intergenic
TAAAGGTGTAGAGAATAATA+AGG 0.308607 5.3:+12073128 MS.gene02421:CDS
TTTAGCTGATCGCATGTCTA+AGG 0.327571 5.3:+12074242 MS.gene02421:CDS
ACTGCAAAACGTTCCCAAAA+AGG 0.332500 5.3:+12071495 MS.gene02421:CDS
TCCATCAGAAGTAAAATTAG+AGG 0.338597 5.3:+12074002 MS.gene02421:CDS
CAAAGAATGTTGCTATATTT+GGG 0.351384 5.3:+12073317 MS.gene02421:CDS
AGGCTAGGTATTGCAGATTT+GGG 0.357011 5.3:+12071515 MS.gene02421:CDS
GGCTGCAGCTGAACCTTTGT+TGG 0.360677 5.3:+12074164 MS.gene02421:CDS
GATATCACAAACAAAGTGTT+TGG 0.381129 5.3:-12071551 None:intergenic
TAAGCGTTGAGCACGTTTGC+GGG 0.397564 5.3:-12073177 None:intergenic
TGCCCCATCAATAAGTGGTT+TGG 0.408689 5.3:-12074118 None:intergenic
GTCATTCACTATTGATCGTC+TGG 0.410501 5.3:+12074038 MS.gene02421:CDS
TTATCCAAACCACTTATTGA+TGG 0.418082 5.3:+12074114 MS.gene02421:CDS
CCTTTGTTGGTCAGTCACTT+TGG 0.420436 5.3:+12074177 MS.gene02421:CDS
CTCCACATGAATGGAGGAAC+TGG 0.431401 5.3:+12071216 MS.gene02421:CDS
AATTATAATGGAGGAGCAAA+TGG 0.437256 5.3:+12073948 MS.gene02421:CDS
ACAATGTCACAAATTGCATC+AGG 0.442481 5.3:+12074142 MS.gene02421:CDS
TATCCAAACCACTTATTGAT+GGG 0.442507 5.3:+12074115 MS.gene02421:CDS
TGCACTTAATGACATGGTCT+TGG 0.443102 5.3:+12073353 MS.gene02421:CDS
GGTCATGTAGGGAATTATAA+TGG 0.444602 5.3:+12073936 MS.gene02421:intron
ATTCCTCTTACAGCCTTCAA+TGG 0.459080 5.3:+12071813 MS.gene02421:CDS
GTGATTACTTAGGTTCCTAA+AGG 0.468002 5.3:+12073111 MS.gene02421:intron
CTATAGAGAATGAGTGAGGT+GGG 0.488534 5.3:+12071159 None:intergenic
GTCTTCATGAATGATCTTCA+AGG 0.490191 5.3:+12071638 MS.gene02421:CDS
TTGTATGCCCCATCAATAAG+TGG 0.490776 5.3:-12074123 None:intergenic
CTCCAGTTCCTCCATTCATG+TGG 0.493129 5.3:-12071218 None:intergenic
GATGAAGTGGAAGGTGGGAT+TGG 0.497921 5.3:+12071716 MS.gene02421:CDS
AAAGGTGTAGAGAATAATAA+GGG 0.504329 5.3:+12073129 MS.gene02421:CDS
ACTTAATGACATGGTCTTGG+AGG 0.509131 5.3:+12073356 MS.gene02421:CDS
CAGCCTTCAATGGCTCTCAC+AGG 0.521164 5.3:+12071823 MS.gene02421:CDS
ATAAGCGTTGAGCACGTTTG+CGG 0.524587 5.3:-12073178 None:intergenic
TGCTGTTGCACTTAATGACA+TGG 0.525913 5.3:+12073347 MS.gene02421:CDS
GTGCAGAAGAACTTGTTGAC+GGG 0.527202 5.3:+12073244 MS.gene02421:CDS
AGAGAAACTAAATGATGAAG+TGG 0.532950 5.3:+12071703 MS.gene02421:CDS
GAACAAGTACTCCACATGAA+TGG 0.537606 5.3:+12071207 MS.gene02421:CDS
TAAATGATGAAGTGGAAGGT+GGG 0.543127 5.3:+12071711 MS.gene02421:CDS
AGGTGGGGAAGAGAGAAACA+AGG 0.549704 5.3:+12071175 MS.gene02421:CDS
GAGAGAAACAAGGATGAAAG+TGG 0.553371 5.3:+12071185 MS.gene02421:CDS
CTAAATGATGAAGTGGAAGG+TGG 0.560920 5.3:+12071710 MS.gene02421:CDS
ATCCAAACCACTTATTGATG+GGG 0.561209 5.3:+12074116 MS.gene02421:CDS
GAGCCATTGAAGGCTGTAAG+AGG 0.561556 5.3:-12071816 None:intergenic
TATAGAGAATGAGTGAGGTG+GGG 0.564610 5.3:+12071160 None:intergenic
GAACCTGTGAGAGCCATTGA+AGG 0.574051 5.3:-12071826 None:intergenic
GAAGATCATTCATGAAGACT+TGG 0.574260 5.3:-12071634 None:intergenic
TGGAAGTAACAGAAGTACAT+TGG 0.580245 5.3:+12074058 MS.gene02421:CDS
TCTTCATGAATGATCTTCAA+GGG 0.587035 5.3:+12071639 MS.gene02421:CDS
CCAAAGTGACTGACCAACAA+AGG 0.591313 5.3:-12074177 None:intergenic
CGTGCAGAAGAACTTGTTGA+CGG 0.591341 5.3:+12073243 MS.gene02421:CDS
AAGCGTTGAGCACGTTTGCG+GGG 0.600291 5.3:-12073176 None:intergenic
AAACTAAATGATGAAGTGGA+AGG 0.604990 5.3:+12071707 MS.gene02421:CDS
TAATAAGGGTAACATTTACA+TGG 0.606370 5.3:+12073143 MS.gene02421:CDS
ACTATAGAGAATGAGTGAGG+TGG 0.610998 5.3:+12071158 None:intergenic
ATCCTGCCATAAAATGAACC+AGG 0.626456 5.3:-12071761 None:intergenic
TGCAGAAGAACTTGTTGACG+GGG 0.630200 5.3:+12073245 MS.gene02421:CDS
CAATGTCACAAATTGCATCA+GGG 0.643382 5.3:+12074143 MS.gene02421:CDS
CAAGTACTCCACATGAATGG+AGG 0.651462 5.3:+12071210 MS.gene02421:CDS
CATGTAGGGAATTATAATGG+AGG 0.653703 5.3:+12073939 MS.gene02421:intron
AAAACTATAGAGAATGAGTG+AGG 0.666058 5.3:+12071155 None:intergenic
GATGGAGATGGTGTGTACTG+AGG 0.725953 5.3:-12073985 None:intergenic
GCAGAAGAACTTGTTGACGG+GGG 0.729596 5.3:+12073246 MS.gene02421:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAAAAAAAATCATA+AGG - chr5.3:12072031-12072050 None:intergenic 10.0%
!! ATGAAAATATATAGTTATAA+TGG + chr5.3:12071874-12071893 MS.gene02421:intron 10.0%
!! TCTAAATTATAAAATAACAT+AGG - chr5.3:12073608-12073627 None:intergenic 10.0%
!!! AAAAATAAAGATAACTTTTA+TGG + chr5.3:12072793-12072812 MS.gene02421:intron 10.0%
!!! AATTACGAAAATATTTTTAT+TGG + chr5.3:12073915-12073934 MS.gene02421:intron 10.0%
!! AAAATAGGTTTAATCTATAA+AGG - chr5.3:12073545-12073564 None:intergenic 15.0%
!! AAATAGGTTTAATCTATAAA+GGG - chr5.3:12073544-12073563 None:intergenic 15.0%
!! AAGAATATTCAAGAAAATTT+CGG - chr5.3:12073879-12073898 None:intergenic 15.0%
!! ATTTAGACTAACTTAATATA+GGG - chr5.3:12072435-12072454 None:intergenic 15.0%
!! CAATAAAAGTAACAAAAATT+TGG - chr5.3:12072205-12072224 None:intergenic 15.0%
!! TAAATTATATTGTGTGAAAT+CGG + chr5.3:12072871-12072890 MS.gene02421:intron 15.0%
!!! ATATTTAGAACAAAAAAAGT+GGG + chr5.3:12072159-12072178 MS.gene02421:intron 15.0%
!!! GAATAAATGTTTTAATAAAG+AGG - chr5.3:12073679-12073698 None:intergenic 15.0%
!!! TAAAATAATTGCTATTTGTT+TGG + chr5.3:12073089-12073108 MS.gene02421:intron 15.0%
!!! TTCATAAATAAGAGTATTAT+TGG - chr5.3:12071859-12071878 None:intergenic 15.0%
!! ACATGATGAACAAATAATAA+GGG + chr5.3:12071918-12071937 MS.gene02421:intron 20.0%
!! CATTTAGACTAACTTAATAT+AGG - chr5.3:12072436-12072455 None:intergenic 20.0%
!!! AAAAACAAAAGATGTGTTTT+GGG - chr5.3:12073030-12073049 None:intergenic 20.0%
!!! AATATTTTTATTGGTCATGT+AGG + chr5.3:12073924-12073943 MS.gene02421:intron 20.0%
!!! ATATTTTATTACCTGAACTA+AGG - chr5.3:12071265-12071284 None:intergenic 20.0%
!!! ATATTTTTATTGGTCATGTA+GGG + chr5.3:12073925-12073944 MS.gene02421:intron 20.0%
!!! ATGATTTCAACAACATTTTT+AGG + chr5.3:12071663-12071682 MS.gene02421:CDS 20.0%
!!! ATGCAATTTTTATTTGTATC+CGG + chr5.3:12072640-12072659 MS.gene02421:intron 20.0%
!!! ATTTTATATGGTACAGAAAA+AGG + chr5.3:12071424-12071443 MS.gene02421:intron 20.0%
!!! CATATTTAGAACAAAAAAAG+TGG + chr5.3:12072158-12072177 MS.gene02421:intron 20.0%
!!! GAGTATTTTATAAACTTGTT+TGG + chr5.3:12073449-12073468 MS.gene02421:intron 20.0%
!!! GTGTATTTACAACTTTTTTT+AGG - chr5.3:12071900-12071919 None:intergenic 20.0%
!!! TAAAAACAAAAGATGTGTTT+TGG - chr5.3:12073031-12073050 None:intergenic 20.0%
!!! TAAATAAGAGTATTATTGGT+AGG - chr5.3:12071855-12071874 None:intergenic 20.0%
!!! TCTTTTGTTTTTAAATTGCT+AGG + chr5.3:12073038-12073057 MS.gene02421:intron 20.0%
!!! TTTTACATTTAAGAAAAGTC+TGG + chr5.3:12073817-12073836 MS.gene02421:intron 20.0%
!!! TTTTATATGGTACAGAAAAA+GGG + chr5.3:12071425-12071444 MS.gene02421:intron 20.0%
! AATCTTGGATTACTAATTGA+TGG + chr5.3:12073840-12073859 MS.gene02421:intron 25.0%
! ACCTAAAAAATAAGTGATAG+AGG + chr5.3:12072954-12072973 MS.gene02421:intron 25.0%
! AGTTCATTAAAGACGAAAAA+TGG + chr5.3:12073727-12073746 MS.gene02421:intron 25.0%
! CAAAAAGTTGAAACTTCATA+AGG + chr5.3:12072268-12072287 MS.gene02421:intron 25.0%
! CAAAGAATGTTGCTATATTT+GGG + chr5.3:12073317-12073336 MS.gene02421:CDS 25.0%
! CACATGATGAACAAATAATA+AGG + chr5.3:12071917-12071936 MS.gene02421:intron 25.0%
! CATAGACTAAAATTGTTTGT+TGG - chr5.3:12072101-12072120 None:intergenic 25.0%
! TAAAACCTAAGTTATTGTTG+TGG - chr5.3:12072542-12072561 None:intergenic 25.0%
! TAATAAGGGTAACATTTACA+TGG + chr5.3:12073143-12073162 MS.gene02421:CDS 25.0%
! TATAGATGTAAGACATAGAA+GGG - chr5.3:12073774-12073793 None:intergenic 25.0%
! TTATTATTCTCTACACCTTT+AGG - chr5.3:12073129-12073148 None:intergenic 25.0%
!! AAACTCATTTTCAAACTGTA+TGG - chr5.3:12072903-12072922 None:intergenic 25.0%
!! AAAGGTGTAGAGAATAATAA+GGG + chr5.3:12073129-12073148 MS.gene02421:CDS 25.0%
!! ATTGGTCAAATCTTTTTCTA+TGG + chr5.3:12071734-12071753 MS.gene02421:CDS 25.0%
!! CTTACGATGAAGATTTTATA+TGG + chr5.3:12071412-12071431 MS.gene02421:intron 25.0%
!! GGGATACTATTTAATTTATG+AGG - chr5.3:12073010-12073029 None:intergenic 25.0%
!! TAAAGGTGTAGAGAATAATA+AGG + chr5.3:12073128-12073147 MS.gene02421:CDS 25.0%
!! TATTTGTTTGGTGATTACTT+AGG + chr5.3:12073101-12073120 MS.gene02421:intron 25.0%
!! TTGAAAATGAGTTTTGCATA+AGG + chr5.3:12072909-12072928 MS.gene02421:intron 25.0%
!! TTGGTCAAATCTTTTTCTAT+GGG + chr5.3:12071735-12071754 MS.gene02421:CDS 25.0%
!! TTTTATGTTCCAATAGCTTT+TGG + chr5.3:12072574-12072593 MS.gene02421:intron 25.0%
!!! AAATTAGAGGTTTTGAAAGA+AGG + chr5.3:12074015-12074034 MS.gene02421:CDS 25.0%
!!! AATTAGAGGTTTTGAAAGAA+GGG + chr5.3:12074016-12074035 MS.gene02421:CDS 25.0%
!!! ATGAAATGCATTGTTTTTGT+TGG - chr5.3:12071791-12071810 None:intergenic 25.0%
!!! TATTCTTGATAACGTTGTAA+AGG + chr5.3:12073892-12073911 MS.gene02421:intron 25.0%
!!! TCCTCTATCACTTATTTTTT+AGG - chr5.3:12072958-12072977 None:intergenic 25.0%
!!! TTACGTGTGATCTTTTTTAT+GGG - chr5.3:12071305-12071324 None:intergenic 25.0%
!!! TTTACGTGTGATCTTTTTTA+TGG - chr5.3:12071306-12071325 None:intergenic 25.0%
!!! TTTTTTAGGTGAAATCCATA+TGG - chr5.3:12072944-12072963 None:intergenic 25.0%
AAACTAAATGATGAAGTGGA+AGG + chr5.3:12071707-12071726 MS.gene02421:CDS 30.0%
AGAGAAACTAAATGATGAAG+TGG + chr5.3:12071703-12071722 MS.gene02421:CDS 30.0%
ATAGATGTAAGACATAGAAG+GGG - chr5.3:12073773-12073792 None:intergenic 30.0%
CAATATCTGTTACAAACACA+AGG - chr5.3:12072689-12072708 None:intergenic 30.0%
CTATAGATGTAAGACATAGA+AGG - chr5.3:12073775-12073794 None:intergenic 30.0%
GAGCGAATTATCAACTTATA+AGG + chr5.3:12073402-12073421 MS.gene02421:intron 30.0%
GCAAAGAATGTTGCTATATT+TGG + chr5.3:12073316-12073335 MS.gene02421:CDS 30.0%
TATCCAAACCACTTATTGAT+GGG + chr5.3:12074115-12074134 MS.gene02421:CDS 30.0%
TCAAATTTCTTGACATAGAC+AGG + chr5.3:12072486-12072505 MS.gene02421:intron 30.0%
TCATGAAAACCAAAAGCTAT+TGG - chr5.3:12072586-12072605 None:intergenic 30.0%
TCCATCAGAAGTAAAATTAG+AGG + chr5.3:12074002-12074021 MS.gene02421:CDS 30.0%
TCTTCATGAATGATCTTCAA+GGG + chr5.3:12071639-12071658 MS.gene02421:CDS 30.0%
TTATCCAAACCACTTATTGA+TGG + chr5.3:12074114-12074133 MS.gene02421:CDS 30.0%
TTCAAAAAACTCCTTAGTTC+AGG + chr5.3:12071251-12071270 MS.gene02421:CDS 30.0%
! AAAATGAGTTTTGCATAAGG+TGG + chr5.3:12072912-12072931 MS.gene02421:intron 30.0%
! AATTATAATGGAGGAGCAAA+TGG + chr5.3:12073948-12073967 MS.gene02421:CDS 30.0%
! AATTTTACTTCTGATGGAGA+TGG - chr5.3:12074000-12074019 None:intergenic 30.0%
! ACCTCTAATTTTACTTCTGA+TGG - chr5.3:12074006-12074025 None:intergenic 30.0%
! GATATCACAAACAAAGTGTT+TGG - chr5.3:12071554-12071573 None:intergenic 30.0%
! GCAGCTACATAATCATATTT+TGG + chr5.3:12072290-12072309 MS.gene02421:intron 30.0%
! GCTATCATTGAAGAAGTTTT+TGG + chr5.3:12074204-12074223 MS.gene02421:CDS 30.0%
! GTTTGTTGGATAATTTCGTA+GGG - chr5.3:12072087-12072106 None:intergenic 30.0%
! TGGTCAAATCTTTTTCTATG+GGG + chr5.3:12071736-12071755 MS.gene02421:CDS 30.0%
! TGTTTGTTGGATAATTTCGT+AGG - chr5.3:12072088-12072107 None:intergenic 30.0%
! TTAAGAAAAGTCTGGAATCT+TGG + chr5.3:12073825-12073844 MS.gene02421:intron 30.0%
!! CAATTTTTATTTGTATCCGG+TGG + chr5.3:12072643-12072662 MS.gene02421:intron 30.0%
!! TAAGAGTATTATTGGTAGGA+TGG - chr5.3:12071851-12071870 None:intergenic 30.0%
!! TGTTTTTAAATTGCTAGGAG+TGG + chr5.3:12073043-12073062 MS.gene02421:intron 30.0%
!!! CTTTTGGTTTTCATGATTGA+TGG + chr5.3:12072590-12072609 MS.gene02421:intron 30.0%
AAATGTAAAAGAGATGCACC+AGG - chr5.3:12073807-12073826 None:intergenic 35.0%
AATGTAAAAGAGATGCACCA+GGG - chr5.3:12073806-12073825 None:intergenic 35.0%
ACAATGTCACAAATTGCATC+AGG + chr5.3:12074142-12074161 MS.gene02421:CDS 35.0%
ATCCAAACCACTTATTGATG+GGG + chr5.3:12074116-12074135 MS.gene02421:CDS 35.0%
CAATGTCACAAATTGCATCA+GGG + chr5.3:12074143-12074162 MS.gene02421:CDS 35.0%
CACATCCACAACAATAACTT+AGG + chr5.3:12072534-12072553 MS.gene02421:intron 35.0%
CATGTAGGGAATTATAATGG+AGG + chr5.3:12073939-12073958 MS.gene02421:intron 35.0%
CTAAGTTATTGTTGTGGATG+TGG - chr5.3:12072536-12072555 None:intergenic 35.0%
GAAGATCATTCATGAAGACT+TGG - chr5.3:12071637-12071656 None:intergenic 35.0%
GGTCATGTAGGGAATTATAA+TGG + chr5.3:12073936-12073955 MS.gene02421:intron 35.0%
GTCTTCATGAATGATCTTCA+AGG + chr5.3:12071638-12071657 MS.gene02421:CDS 35.0%
GTGATTACTTAGGTTCCTAA+AGG + chr5.3:12073111-12073130 MS.gene02421:intron 35.0%
TAAATGATGAAGTGGAAGGT+GGG + chr5.3:12071711-12071730 MS.gene02421:CDS 35.0%
TTGGTCAAACAAGATGTGTT+TGG + chr5.3:12073468-12073487 MS.gene02421:intron 35.0%
TTTGCAGTAGAGGTTCTTTA+TGG - chr5.3:12071483-12071502 None:intergenic 35.0%
! ACTTTTAGCATACATGTGCA+GGG + chr5.3:12072720-12072739 MS.gene02421:intron 35.0%
! CGTATGGTTCTCACAATTTT+GGG + chr5.3:12073270-12073289 MS.gene02421:CDS 35.0%
! TCGTATGGTTCTCACAATTT+TGG + chr5.3:12073269-12073288 MS.gene02421:CDS 35.0%
! TGGAAGTAACAGAAGTACAT+TGG + chr5.3:12074058-12074077 MS.gene02421:CDS 35.0%
! TTCATGAAGACTTGGTATTC+TGG - chr5.3:12071629-12071648 None:intergenic 35.0%
!! TTTTTATTTGTATCCGGTGG+TGG + chr5.3:12072646-12072665 MS.gene02421:intron 35.0%
AAAACGTTCCCAAAAAGGCT+AGG + chr5.3:12071500-12071519 MS.gene02421:CDS 40.0%
ACTGCAAAACGTTCCCAAAA+AGG + chr5.3:12071495-12071514 MS.gene02421:CDS 40.0%
ATAAGGTGGTGAGATCCATA+TGG + chr5.3:12072926-12072945 MS.gene02421:intron 40.0%
ATCCTGCCATAAAATGAACC+AGG - chr5.3:12071764-12071783 None:intergenic 40.0%
ATTCCTCTTACAGCCTTCAA+TGG + chr5.3:12071813-12071832 MS.gene02421:CDS 40.0%
ATTGCATGACGTCCATACAA+AGG - chr5.3:12072627-12072646 None:intergenic 40.0%
CAGGTCATCAACAAACTCAA+TGG + chr5.3:12072505-12072524 MS.gene02421:intron 40.0%
CTAAATGATGAAGTGGAAGG+TGG + chr5.3:12071710-12071729 MS.gene02421:CDS 40.0%
GAACAAGTACTCCACATGAA+TGG + chr5.3:12071207-12071226 MS.gene02421:CDS 40.0%
GAGACTCGTGATTATGTTCT+TGG - chr5.3:12071607-12071626 None:intergenic 40.0%
GAGAGAAACAAGGATGAAAG+TGG + chr5.3:12071185-12071204 MS.gene02421:CDS 40.0%
GTCATTCACTATTGATCGTC+TGG + chr5.3:12074038-12074057 MS.gene02421:CDS 40.0%
TGCACTTAATGACATGGTCT+TGG + chr5.3:12073353-12073372 MS.gene02421:CDS 40.0%
TGCTGTTGCACTTAATGACA+TGG + chr5.3:12073347-12073366 MS.gene02421:CDS 40.0%
TTGTATGCCCCATCAATAAG+TGG - chr5.3:12074126-12074145 None:intergenic 40.0%
TTTAGCTGATCGCATGTCTA+AGG + chr5.3:12074242-12074261 MS.gene02421:CDS 40.0%
! AAGGCTAGGTATTGCAGATT+TGG + chr5.3:12071514-12071533 MS.gene02421:CDS 40.0%
! ACTTAATGACATGGTCTTGG+AGG + chr5.3:12073356-12073375 MS.gene02421:CDS 40.0%
! AGGCTAGGTATTGCAGATTT+GGG + chr5.3:12071515-12071534 MS.gene02421:CDS 40.0%
! CACTTTTAGCATACATGTGC+AGG + chr5.3:12072719-12072738 MS.gene02421:intron 40.0%
! CATCTATAGTCTTTTTGCCC+TGG + chr5.3:12073786-12073805 MS.gene02421:intron 40.0%
! TAACATAGGCTAGTTCTCAG+TGG - chr5.3:12073594-12073613 None:intergenic 40.0%
!! CAGATTTGGGTTGTTCTTCT+GGG + chr5.3:12071528-12071547 MS.gene02421:CDS 40.0%
!! CTGCAATACCTAGCCTTTTT+GGG - chr5.3:12071511-12071530 None:intergenic 40.0%
!! TCTGCAATACCTAGCCTTTT+TGG - chr5.3:12071512-12071531 None:intergenic 40.0%
ATGACGTCCATACAAAGGAG+TGG - chr5.3:12072622-12072641 None:intergenic 45.0%
CAAGTACTCCACATGAATGG+AGG + chr5.3:12071210-12071229 MS.gene02421:CDS 45.0%
CCAAAGTGACTGACCAACAA+AGG - chr5.3:12074180-12074199 None:intergenic 45.0%
CCTTTGTTGGTCAGTCACTT+TGG + chr5.3:12074177-12074196 MS.gene02421:CDS 45.0%
GAGACATCCACTCCTTTGTA+TGG + chr5.3:12072612-12072631 MS.gene02421:intron 45.0%
TGCCCCATCAATAAGTGGTT+TGG - chr5.3:12074121-12074140 None:intergenic 45.0%
! AACACAAGGCACCTATCAGA+AGG - chr5.3:12072675-12072694 None:intergenic 45.0%
! ATCTTTTTCTATGGGGCTCC+TGG + chr5.3:12071743-12071762 MS.gene02421:CDS 45.0%
! CTCCTGGTTCATTTTATGGC+AGG + chr5.3:12071759-12071778 MS.gene02421:CDS 45.0%
! TTGGGAACGTTTTGCAGTAG+AGG - chr5.3:12071493-12071512 None:intergenic 45.0%
!! ATAAGCGTTGAGCACGTTTG+CGG - chr5.3:12073181-12073200 None:intergenic 45.0%
!! CGTGCAGAAGAACTTGTTGA+CGG + chr5.3:12073243-12073262 MS.gene02421:CDS 45.0%
!! GCAGATTTGGGTTGTTCTTC+TGG + chr5.3:12071527-12071546 MS.gene02421:CDS 45.0%
!! GTGCAGAAGAACTTGTTGAC+GGG + chr5.3:12073244-12073263 MS.gene02421:CDS 45.0%
!! TGCAGAAGAACTTGTTGACG+GGG + chr5.3:12073245-12073264 MS.gene02421:CDS 45.0%
!! TTATAATTGTTTAAAAAAAT+AGG - chr5.3:12073560-12073579 None:intergenic 5.0%
!!! AAATAAATTGTTTTTATTTT+TGG + chr5.3:12071988-12072007 MS.gene02421:intron 5.0%
!!! AATAAATTGTTTTTATTTTT+GGG + chr5.3:12071989-12072008 MS.gene02421:intron 5.0%
AGGTGGGGAAGAGAGAAACA+AGG + chr5.3:12071175-12071194 MS.gene02421:CDS 50.0%
CTCCACATGAATGGAGGAAC+TGG + chr5.3:12071216-12071235 MS.gene02421:CDS 50.0%
CTCCAGTTCCTCCATTCATG+TGG - chr5.3:12071221-12071240 None:intergenic 50.0%
GAACCTGTGAGAGCCATTGA+AGG - chr5.3:12071829-12071848 None:intergenic 50.0%
GAGCCATTGAAGGCTGTAAG+AGG - chr5.3:12071819-12071838 None:intergenic 50.0%
GATGAAGTGGAAGGTGGGAT+TGG + chr5.3:12071716-12071735 MS.gene02421:CDS 50.0%
GATGGAGATGGTGTGTACTG+AGG - chr5.3:12073988-12074007 None:intergenic 50.0%
TATCAGAAGGATGCCACCAC+CGG - chr5.3:12072662-12072681 None:intergenic 50.0%
! GGGGCTCCTGGTTCATTTTA+TGG + chr5.3:12071755-12071774 MS.gene02421:CDS 50.0%
!! GCAGAAGAACTTGTTGACGG+GGG + chr5.3:12073246-12073265 MS.gene02421:CDS 50.0%
!! TAAGCGTTGAGCACGTTTGC+GGG - chr5.3:12073180-12073199 None:intergenic 50.0%
CAGCCTTCAATGGCTCTCAC+AGG + chr5.3:12071823-12071842 MS.gene02421:CDS 55.0%
GGCTGCAGCTGAACCTTTGT+TGG + chr5.3:12074164-12074183 MS.gene02421:CDS 55.0%
! ACTTGTTGACGGGGGTCGTA+TGG + chr5.3:12073254-12073273 MS.gene02421:CDS 55.0%
! GGTGGTGGCATCCTTCTGAT+AGG + chr5.3:12072661-12072680 MS.gene02421:intron 55.0%
!! AAGCGTTGAGCACGTTTGCG+GGG - chr5.3:12073179-12073198 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 12071168 12074314 12071168 ID=MS.gene02421
chr5.3 mRNA 12071168 12074314 12071168 ID=MS.gene02421.t1;Parent=MS.gene02421
chr5.3 exon 12071168 12071272 12071168 ID=MS.gene02421.t1.exon1;Parent=MS.gene02421.t1
chr5.3 CDS 12071168 12071272 12071168 ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1
chr5.3 exon 12071440 12071844 12071440 ID=MS.gene02421.t1.exon2;Parent=MS.gene02421.t1
chr5.3 CDS 12071440 12071844 12071440 ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1
chr5.3 exon 12073123 12073377 12073123 ID=MS.gene02421.t1.exon3;Parent=MS.gene02421.t1
chr5.3 CDS 12073123 12073377 12073123 ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1
chr5.3 exon 12073946 12074314 12073946 ID=MS.gene02421.t1.exon4;Parent=MS.gene02421.t1
chr5.3 CDS 12073946 12074314 12073946 ID=cds.MS.gene02421.t1;Parent=MS.gene02421.t1
Gene Sequence

>MS.gene02421

ATGAGTGAGGTGGGGAAGAGAGAAACAAGGATGAAAGTGGAACAAGTACTCCACATGAATGGAGGAACTGGAGAAACAAGCTATTCAAAAAACTCCTTAGTTCAGGTAATAAAATATAACACGTAAAATGTTCACCCATAAAAAAGATCACACGTAAAATTATTTTTTTCTTTATATTTCATTAATATCAATTCATATAACAATAGTTTAGATGACATATAACACTGTATTTTACTCTATTTGTCTTACGATGAAGATTTTATATGGTACAGAAAAAGGGTATTTCTTTGACAAGAGAAATGAGAGATGAAGCCATAAAGAACCTCTACTGCAAAACGTTCCCAAAAAGGCTAGGTATTGCAGATTTGGGTTGTTCTTCTGGGCCAAACACTTTGTTTGTGATATCTGAAGTTATCAAATTAGTTGAGAAACTTTGCCAAGAACATAATCACGAGTCTCCAGAATACCAAGTCTTCATGAATGATCTTCAAGGGAATGATTTCAACAACATTTTTAGGTTACTTGATAGATTCACAGAGAAACTAAATGATGAAGTGGAAGGTGGGATTGGTCAAATCTTTTTCTATGGGGCTCCTGGTTCATTTTATGGCAGGATTTTTCCAACAAAAACAATGCATTTCATTCATTCCTCTTACAGCCTTCAATGGCTCTCACAGGTTCCATCCTACCAATAATACTCTTATTTATGAAAATATATAGTTATAATGGCCTAAAAAAAGTTGTAAATACACATGATGAACAAATAATAAGGGAAGAATAAATATATTTTAGTTTTAGCATAGCATTTGTAGATTGATATAAATAAATTGTTTTTATTTTTGGGTTGAATATGTTTTGAACCTTATGATTTTTTTTAATTGTTTTTCGTCTACATAAAATTTTTGCATTATTTAGTCCCTACGAAATTATCCAACAAACAATTTTAGTCTATGTTGTTAAGTTAACATAACTTTTGAATGATTTTTCAGACATATTTAGAACAAAAAAAGTGGGCTCAAAATTTGACTCTAGATCCAAATTTTTGTTACTTTTATTGAGCTTTTGATGTTTAAAAAATTCAGATTTAATTCATCGCATATCAAAAAGTTGAAACTTCATAAGGCAGCTACATAATCATATTTTGGTAAAAACATAATACTCTTTGTAAAAATGTTAAGAAACACAAAAAAGAACATTTACTTGAATGACTAATAAAGAAAAAAATTGAAATCTAAAAAAAGTGTCGCAAAAATAAAGTTATGTACCCTATATTAAGTTAGTCTAAATGAAGTTGAACTTGAATCTCTTAAGAAATATTTCAAATTTCTTGACATAGACAGGTCATCAACAAACTCAATGGATACTCCACATCCACAACAATAACTTAGGTTTTAATAAAGATAATTTTTTATGTTCCAATAGCTTTTGGTTTTCATGATTGATGGAGACATCCACTCCTTTGTATGGACGTCATGCAATTTTTATTTGTATCCGGTGGTGGCATCCTTCTGATAGGTGCCTTGTGTTTGTAACAGATATTGAGTGATTCATCACTTTTAGCATACATGTGCAGGGTGAATCACTTTTTCGTTTGAACAATATATTCTATTTTGATTTGTTAAAAAAAAAATAAAGATAACTTTTATGGTTAAATCGTAATAGAAATTCAATCTCTCTTTTTTTGAATAAAAACAAAGATAGATTAAATTATATTGTGTGAAATCGGTATCAGCCATACAGTTTGAAAATGAGTTTTGCATAAGGTGGTGAGATCCATATGGATTTCACCTAAAAAATAAGTGATAGAGGAATTATTAAAAAAAAATTGTTGTTAGCACTCCTCATAAATTAAATAGTATCCCAAAACACATCTTTTGTTTTTAAATTGCTAGGAGTGGAACAAATATAATAGATTTGAAACTAAAATAATTGCTATTTGTTTGGTGATTACTTAGGTTCCTAAAGGTGTAGAGAATAATAAGGGTAACATTTACATGGCTACAACAAGCCCCGCAAACGTGCTCAACGCTTATCATGAGCAATTTCAAAGAGATTTCTCATTGTTTCTCAAGTGTCGTGCAGAAGAACTTGTTGACGGGGGTCGTATGGTTCTCACAATTTTGGGAAGAAAAAGTGATGATAGATATAGCAAAGAATGTTGCTATATTTGGGAGCTTCTTGCTGTTGCACTTAATGACATGGTCTTGGAGGTACATATTTGCTAAATCAATCTTGAGCGAATTATCAACTTATAAGGAATTAGCTTATTTATAGCTCATTAGAGTATTTTATAAACTTGTTTGGTCAAACAAGATGTGTTTGGCAATAAGCTTATTGTAGTAACTTATAATTTTATATTTTCTTTCAATTTTACCCTTTATAGATTAAACCTATTTTTTTAAACAATTATAATGACAAACTATCCACTGAGAACTAGCCTATGTTATTTTATAATTTAGATTAACAACTAACATTTGTCATTTAAAAAAATATAATGCATGCTAACTACCTCTTTATTAAAACATTTATTCTATATAGTTGACAAATGAGATGAAACTGAGTTCATTAAAGACGAAAAATGGCAAAAAAGAAAGCATTCATTCCCCTTCTATGTCTTACATCTATAGTCTTTTTGCCCTGGTGCATCTCTTTTACATTTAAGAAAAGTCTGGAATCTTGGATTACTAATTGATGGAATACGAAACAATCCGAAATTTTCTTGAATATTCTTGATAACGTTGTAAAGGAATTACGAAAATATTTTTATTGGTCATGTAGGGAATTATAATGGAGGAGCAAATGGACACTTTCAACATTCCTCAGTACACACCATCTCCATCAGAAGTAAAATTAGAGGTTTTGAAAGAAGGGTCATTCACTATTGATCGTCTGGAAGTAACAGAAGTACATTGGAATGCTTATAATGATATTGAATTTGAAAGTTCTTTATCCAAACCACTTATTGATGGGGCATACAATGTCACAAATTGCATCAGGGCTGCAGCTGAACCTTTGTTGGTCAGTCACTTTGGAGAAGCTATCATTGAAGAAGTTTTTGGAAGATATCTTGAAATTTTAGCTGATCGCATGTCTAAGGAGAGAACTGAATTCATTAATGTGAGCGTATCAATGACCAAAAAAGTGTGA

Protein sequence

>MS.gene02421.t1

MSEVGKRETRMKVEQVLHMNGGTGETSYSKNSLVQKKGISLTREMRDEAIKNLYCKTFPKRLGIADLGCSSGPNTLFVISEVIKLVEKLCQEHNHESPEYQVFMNDLQGNDFNNIFRLLDRFTEKLNDEVEGGIGQIFFYGAPGSFYGRIFPTKTMHFIHSSYSLQWLSQVPKGVENNKGNIYMATTSPANVLNAYHEQFQRDFSLFLKCRAEELVDGGRMVLTILGRKSDDRYSKECCYIWELLAVALNDMVLEGIIMEEQMDTFNIPQYTPSPSEVKLEVLKEGSFTIDRLEVTEVHWNAYNDIEFESSLSKPLIDGAYNVTNCIRAAAEPLLVSHFGEAIIEEVFGRYLEILADRMSKERTEFINVSVSMTKKV