Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008450.t1 | RHN67909.1 | 96.8 | 339 | 8 | 1 | 1 | 339 | 7 | 342 | 4.30E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008450.t1 | Q9AVK0 | 42.5 | 341 | 185 | 4 | 2 | 337 | 31 | 365 | 2.2e-73 | 277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008450.t1 | A0A072V8J9 | 96.8 | 339 | 8 | 1 | 1 | 339 | 54 | 389 | 3.1e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024315 | MS.gene008450 | PPI |
| MS.gene52303 | MS.gene008450 | PPI |
| MS.gene99450 | MS.gene008450 | PPI |
| MS.gene000556 | MS.gene008450 | PPI |
| MS.gene008450 | MS.gene25135 | PPI |
| MS.gene02421 | MS.gene008450 | PPI |
| MS.gene010553 | MS.gene008450 | PPI |
| MS.gene033748 | MS.gene008450 | PPI |
| MS.gene037613 | MS.gene008450 | PPI |
| MS.gene014262 | MS.gene008450 | PPI |
| MS.gene73369 | MS.gene008450 | PPI |
| MS.gene024301 | MS.gene008450 | PPI |
| MS.gene87476 | MS.gene008450 | PPI |
| MS.gene73290 | MS.gene008450 | PPI |
| MS.gene008450 | MS.gene024314 | PPI |
| MS.gene012028 | MS.gene008450 | PPI |
| MS.gene59406 | MS.gene008450 | PPI |
| MS.gene033735 | MS.gene008450 | PPI |
| MS.gene008450 | MS.gene049577 | PPI |
| MS.gene024299 | MS.gene008450 | PPI |
| MS.gene063148 | MS.gene008450 | PPI |
| MS.gene52320 | MS.gene008450 | PPI |
| MS.gene033734 | MS.gene008450 | PPI |
| MS.gene07908 | MS.gene008450 | PPI |
| MS.gene68796 | MS.gene008450 | PPI |
| MS.gene64697 | MS.gene008450 | PPI |
| MS.gene008450 | MS.gene76430 | PPI |
| MS.gene68203 | MS.gene008450 | PPI |
| MS.gene008450 | MS.gene033750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008450.t1 | MTR_3g467560 | 96.755 | 339 | 8 | 1 | 1 | 339 | 54 | 389 | 0.0 | 672 |
| MS.gene008450.t1 | MTR_7g084620 | 78.171 | 339 | 67 | 4 | 1 | 337 | 30 | 363 | 0.0 | 541 |
| MS.gene008450.t1 | MTR_7g084350 | 70.623 | 337 | 98 | 1 | 1 | 337 | 28 | 363 | 7.80e-180 | 502 |
| MS.gene008450.t1 | MTR_7g084330 | 70.501 | 339 | 78 | 5 | 1 | 337 | 13 | 331 | 8.94e-169 | 473 |
| MS.gene008450.t1 | MTR_3g117060 | 54.167 | 336 | 147 | 4 | 6 | 337 | 35 | 367 | 1.67e-127 | 370 |
| MS.gene008450.t1 | MTR_8g076900 | 44.512 | 328 | 167 | 5 | 15 | 337 | 43 | 360 | 7.39e-91 | 276 |
| MS.gene008450.t1 | MTR_8g077040 | 40.698 | 344 | 184 | 6 | 5 | 337 | 34 | 368 | 8.45e-90 | 273 |
| MS.gene008450.t1 | MTR_5g020940 | 43.939 | 330 | 167 | 5 | 19 | 337 | 57 | 379 | 4.93e-89 | 272 |
| MS.gene008450.t1 | MTR_6g056070 | 42.138 | 318 | 165 | 4 | 24 | 337 | 53 | 355 | 1.02e-87 | 268 |
| MS.gene008450.t1 | MTR_4g018820 | 40.059 | 337 | 185 | 6 | 5 | 337 | 34 | 357 | 1.43e-85 | 262 |
| MS.gene008450.t1 | MTR_3g467270 | 39.319 | 323 | 177 | 4 | 26 | 337 | 53 | 367 | 3.00e-83 | 257 |
| MS.gene008450.t1 | MTR_1g022465 | 46.341 | 328 | 152 | 6 | 26 | 337 | 57 | 376 | 1.14e-80 | 250 |
| MS.gene008450.t1 | MTR_8g020700 | 39.169 | 337 | 184 | 4 | 6 | 337 | 35 | 355 | 2.39e-80 | 249 |
| MS.gene008450.t1 | MTR_1g022455 | 45.679 | 324 | 161 | 5 | 26 | 337 | 57 | 377 | 1.73e-79 | 247 |
| MS.gene008450.t1 | MTR_8g020690 | 38.576 | 337 | 189 | 5 | 6 | 337 | 35 | 358 | 1.91e-74 | 234 |
| MS.gene008450.t1 | MTR_5g046110 | 39.003 | 341 | 192 | 4 | 2 | 337 | 91 | 420 | 5.88e-74 | 234 |
| MS.gene008450.t1 | MTR_8g076900 | 50.000 | 208 | 95 | 2 | 15 | 218 | 43 | 245 | 1.67e-64 | 205 |
| MS.gene008450.t1 | MTR_8g020700 | 44.037 | 218 | 111 | 3 | 6 | 218 | 35 | 246 | 1.36e-55 | 182 |
| MS.gene008450.t1 | MTR_3g052700 | 35.168 | 327 | 190 | 8 | 24 | 336 | 69 | 387 | 7.23e-52 | 176 |
| MS.gene008450.t1 | MTR_5g093900 | 34.756 | 328 | 192 | 8 | 23 | 336 | 70 | 389 | 2.73e-51 | 175 |
| MS.gene008450.t1 | MTR_7g084340 | 66.387 | 119 | 40 | 0 | 219 | 337 | 11 | 129 | 5.84e-50 | 163 |
| MS.gene008450.t1 | MTR_3g054330 | 35.366 | 328 | 189 | 9 | 24 | 336 | 61 | 380 | 1.28e-49 | 170 |
| MS.gene008450.t1 | MTR_1g108660 | 33.434 | 332 | 181 | 10 | 17 | 336 | 30 | 333 | 1.99e-49 | 169 |
| MS.gene008450.t1 | MTR_8g077030 | 38.144 | 194 | 91 | 3 | 15 | 208 | 43 | 207 | 7.13e-32 | 125 |
| MS.gene008450.t1 | MTR_6g015620 | 46.457 | 127 | 63 | 2 | 214 | 337 | 12 | 136 | 2.17e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008450.t1 | AT1G19640 | 40.395 | 354 | 190 | 5 | 6 | 338 | 35 | 388 | 5.02e-78 | 244 |
| MS.gene008450.t1 | AT5G66430 | 40.923 | 325 | 173 | 5 | 2 | 319 | 23 | 335 | 1.97e-77 | 241 |
| MS.gene008450.t1 | AT5G38020 | 41.463 | 328 | 167 | 7 | 6 | 319 | 32 | 348 | 4.52e-77 | 241 |
| MS.gene008450.t1 | AT3G11480 | 41.840 | 337 | 176 | 5 | 6 | 337 | 57 | 378 | 1.28e-76 | 240 |
| MS.gene008450.t1 | AT5G38020 | 41.875 | 320 | 161 | 7 | 14 | 319 | 1 | 309 | 6.32e-76 | 237 |
| MS.gene008450.t1 | AT5G04370 | 41.056 | 341 | 182 | 7 | 2 | 337 | 63 | 389 | 5.65e-72 | 229 |
| MS.gene008450.t1 | AT5G04370 | 41.056 | 341 | 182 | 7 | 2 | 337 | 82 | 408 | 6.16e-72 | 229 |
| MS.gene008450.t1 | AT5G04370 | 41.056 | 341 | 182 | 7 | 2 | 337 | 68 | 394 | 6.48e-72 | 229 |
| MS.gene008450.t1 | AT3G21950 | 40.836 | 311 | 153 | 8 | 20 | 313 | 46 | 342 | 1.72e-69 | 221 |
| MS.gene008450.t1 | AT4G36470 | 39.024 | 328 | 173 | 8 | 26 | 339 | 57 | 371 | 2.81e-68 | 218 |
| MS.gene008450.t1 | AT5G04380 | 38.820 | 322 | 174 | 6 | 6 | 319 | 64 | 370 | 8.80e-66 | 213 |
| MS.gene008450.t1 | AT5G04380 | 39.172 | 314 | 168 | 6 | 14 | 319 | 1 | 299 | 2.85e-65 | 209 |
| MS.gene008450.t1 | AT2G14060 | 35.569 | 343 | 207 | 5 | 2 | 339 | 36 | 369 | 1.92e-64 | 208 |
| MS.gene008450.t1 | AT3G21950 | 36.735 | 343 | 154 | 9 | 20 | 313 | 46 | 374 | 3.16e-63 | 206 |
| MS.gene008450.t1 | AT5G04380 | 37.888 | 322 | 170 | 7 | 6 | 319 | 60 | 359 | 6.07e-61 | 199 |
| MS.gene008450.t1 | AT2G14060 | 42.289 | 201 | 108 | 2 | 2 | 202 | 36 | 228 | 3.50e-49 | 165 |
| MS.gene008450.t1 | AT1G15125 | 33.041 | 342 | 192 | 11 | 8 | 337 | 31 | 347 | 4.06e-49 | 168 |
| MS.gene008450.t1 | AT1G68040 | 35.093 | 322 | 174 | 10 | 10 | 322 | 49 | 344 | 5.56e-48 | 166 |
| MS.gene008450.t1 | AT5G38780 | 33.762 | 311 | 164 | 10 | 24 | 319 | 8 | 291 | 2.46e-47 | 162 |
| MS.gene008450.t1 | AT5G55250 | 32.378 | 349 | 207 | 11 | 6 | 336 | 9 | 346 | 3.23e-47 | 163 |
| MS.gene008450.t1 | AT5G38780 | 33.742 | 326 | 173 | 11 | 9 | 319 | 43 | 340 | 3.63e-47 | 163 |
| MS.gene008450.t1 | AT5G38100 | 33.010 | 309 | 170 | 7 | 22 | 318 | 31 | 314 | 4.11e-47 | 162 |
| MS.gene008450.t1 | AT5G55250 | 32.378 | 349 | 207 | 11 | 6 | 336 | 47 | 384 | 4.97e-47 | 164 |
| MS.gene008450.t1 | AT5G38100 | 32.686 | 309 | 171 | 7 | 22 | 318 | 54 | 337 | 1.08e-46 | 162 |
| MS.gene008450.t1 | AT5G37970 | 31.193 | 327 | 188 | 8 | 5 | 319 | 40 | 341 | 2.64e-45 | 158 |
| MS.gene008450.t1 | AT5G37990 | 30.696 | 316 | 182 | 8 | 14 | 317 | 49 | 339 | 7.49e-44 | 154 |
| MS.gene008450.t1 | AT3G44870 | 33.755 | 237 | 131 | 6 | 26 | 254 | 53 | 271 | 4.79e-36 | 134 |
| MS.gene008450.t1 | AT3G44860 | 33.898 | 236 | 137 | 4 | 26 | 255 | 53 | 275 | 6.59e-36 | 133 |
| MS.gene008450.t1 | AT1G66720 | 31.955 | 266 | 149 | 7 | 2 | 255 | 35 | 280 | 2.83e-35 | 132 |
| MS.gene008450.t1 | AT4G26420 | 29.141 | 326 | 197 | 12 | 12 | 314 | 37 | 351 | 7.74e-35 | 131 |
| MS.gene008450.t1 | AT1G66700 | 30.864 | 243 | 142 | 5 | 24 | 255 | 53 | 280 | 2.63e-33 | 126 |
| MS.gene008450.t1 | AT3G44840 | 32.353 | 238 | 136 | 7 | 26 | 254 | 53 | 274 | 4.45e-32 | 123 |
| MS.gene008450.t1 | AT5G56300 | 28.618 | 304 | 191 | 8 | 25 | 313 | 68 | 360 | 2.11e-31 | 122 |
| MS.gene008450.t1 | AT1G66690 | 28.289 | 304 | 168 | 7 | 24 | 310 | 53 | 323 | 2.00e-30 | 119 |
| MS.gene008450.t1 | AT1G15125 | 34.081 | 223 | 124 | 8 | 8 | 221 | 31 | 239 | 3.11e-30 | 115 |
| MS.gene008450.t1 | AT5G38100 | 33.673 | 196 | 114 | 4 | 22 | 213 | 54 | 237 | 1.28e-28 | 111 |
| MS.gene008450.t1 | AT5G38100 | 33.673 | 196 | 114 | 4 | 22 | 213 | 54 | 237 | 1.51e-28 | 111 |
| MS.gene008450.t1 | AT1G66700 | 32.749 | 171 | 98 | 3 | 24 | 190 | 53 | 210 | 1.02e-22 | 95.9 |
| MS.gene008450.t1 | AT4G26420 | 30.348 | 201 | 118 | 8 | 12 | 199 | 37 | 228 | 1.44e-21 | 92.8 |
| MS.gene008450.t1 | AT4G26420 | 30.348 | 201 | 118 | 8 | 12 | 199 | 25 | 216 | 2.03e-21 | 92.4 |
Find 57 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTATTGGCCAAATCTT+TGG | 0.196851 | 3.3:-56327156 | None:intergenic |
| GCTGATTTAGGTTGCTCTTC+GGG | 0.271061 | 3.3:+56325689 | MS.gene008450:CDS |
| GCATTATTGGCCAAATCTTT+GGG | 0.295693 | 3.3:-56327155 | None:intergenic |
| TGTATACTCTTGTAGAAATC+AGG | 0.313909 | 3.3:-56325854 | None:intergenic |
| TTCGGGGCCAAACACACTTT+TGG | 0.318068 | 3.3:+56325706 | MS.gene008450:CDS |
| AATGAAAGTGGCAGCTATAA+TGG | 0.330658 | 3.3:+56325610 | None:intergenic |
| TACCATCAACAATATCATTA+TGG | 0.336487 | 3.3:-56328141 | None:intergenic |
| GCATTAGGCACCCAAAGATT+TGG | 0.343838 | 3.3:+56327145 | MS.gene008450:intron |
| AGCTGATTTAGGTTGCTCTT+CGG | 0.346101 | 3.3:+56325688 | MS.gene008450:CDS |
| TTGATATAAATTTGAAATAC+AGG | 0.349232 | 3.3:-56325788 | None:intergenic |
| CTCCATAATGATATTGTTGA+TGG | 0.373244 | 3.3:+56328139 | MS.gene008450:CDS |
| TATGATGTTCAAGATATTAG+AGG | 0.412683 | 3.3:-56325732 | None:intergenic |
| ACTTCTATTCAAGAGGTACT+TGG | 0.420566 | 3.3:+56327359 | MS.gene008450:CDS |
| GAGGTGACCAAAAGTGTGTT+TGG | 0.437326 | 3.3:-56325713 | None:intergenic |
| TGATAGCCAATGTAGACAAT+AGG | 0.444967 | 3.3:-56325981 | None:intergenic |
| AAAGAAGTTGATATAATTAG+TGG | 0.455446 | 3.3:-56325951 | None:intergenic |
| CCAAACCCGTCTATTAAAAG+AGG | 0.459322 | 3.3:-56328223 | None:intergenic |
| ATTGTATTGCTCTTGACAAA+GGG | 0.486886 | 3.3:+56328331 | MS.gene008450:CDS |
| ATGATGGTACTAACATTCAT+TGG | 0.488849 | 3.3:+56327314 | MS.gene008450:CDS |
| TTTGTAGGGTTTAGTTGAAG+AGG | 0.496525 | 3.3:+56327988 | MS.gene008450:intron |
| CGGGTTTGGTGAAAATATCA+TGG | 0.505556 | 3.3:+56328237 | MS.gene008450:CDS |
| ATTCCTCCTATTGTCTACAT+TGG | 0.506279 | 3.3:+56325975 | MS.gene008450:CDS |
| TATTGTATTGCTCTTGACAA+AGG | 0.506950 | 3.3:+56328330 | MS.gene008450:CDS |
| TCATGGATGAATTGTTCTCA+AGG | 0.510601 | 3.3:+56328254 | MS.gene008450:CDS |
| TGAAATTACTTCTATTCAAG+AGG | 0.513593 | 3.3:+56327352 | MS.gene008450:CDS |
| ACAACCATTAAAAGTTGTGT+TGG | 0.517417 | 3.3:-56325657 | None:intergenic |
| TTGTTGATAGCAAAATGAGA+GGG | 0.521512 | 3.3:+56328164 | MS.gene008450:CDS |
| CAAGAGAAAGGAGAAAATGT+TGG | 0.527738 | 3.3:+56325878 | MS.gene008450:CDS |
| GAGAAAAGTGATAATGAAAG+TGG | 0.534714 | 3.3:+56325598 | None:intergenic |
| AAGAGTATACAACAAGAGAA+AGG | 0.535416 | 3.3:+56325866 | MS.gene008450:CDS |
| AATAGTATCAGATGGTATGA+TGG | 0.539204 | 3.3:+56327298 | MS.gene008450:CDS |
| GGAAGTAAGACAAGTGATTG+AGG | 0.541503 | 3.3:+56328057 | MS.gene008450:CDS |
| TTTGAAATACAGGTGTCTCA+TGG | 0.549266 | 3.3:-56325778 | None:intergenic |
| CTGATTTAGGTTGCTCTTCG+GGG | 0.551359 | 3.3:+56325690 | MS.gene008450:CDS |
| AAAGTTGTGTTGGACATCAA+CGG | 0.558540 | 3.3:-56325647 | None:intergenic |
| TGTCTTACTTCCTCTACAGT+AGG | 0.562905 | 3.3:-56328046 | None:intergenic |
| TAAATATTTCCCTTGTTGAG+TGG | 0.563971 | 3.3:-56327182 | None:intergenic |
| GTATACTCTTGTAGAAATCA+GGG | 0.567996 | 3.3:-56325853 | None:intergenic |
| TAATGCAAAACCACTCAACA+AGG | 0.577573 | 3.3:+56327172 | MS.gene008450:CDS |
| TATTCAAGAGGTACTTGGCA+TGG | 0.581041 | 3.3:+56327364 | MS.gene008450:CDS |
| TGCTTCATAAATGCAACACC+CGG | 0.583899 | 3.3:+56325905 | MS.gene008450:CDS |
| TTCGAAGAAATAGTATCAGA+TGG | 0.593783 | 3.3:+56327290 | MS.gene008450:CDS |
| AAGAAGTTGATATAATTAGT+GGG | 0.594084 | 3.3:-56325950 | None:intergenic |
| TAGCCAATGTAGACAATAGG+AGG | 0.595619 | 3.3:-56325978 | None:intergenic |
| TCTACAGTAGGATGGTATGT+TGG | 0.603625 | 3.3:-56328034 | None:intergenic |
| AGACAAGTGATTGAGGCAGA+AGG | 0.607082 | 3.3:+56328064 | MS.gene008450:CDS |
| AAATATGCTTTATACACCGA+TGG | 0.609341 | 3.3:-56327224 | None:intergenic |
| ATCAAGAACAAGTCCTCCAT+CGG | 0.612922 | 3.3:+56327208 | MS.gene008450:CDS |
| CATCAACAATATCATTATGG+AGG | 0.614744 | 3.3:-56328138 | None:intergenic |
| AACATACCATCCTACTGTAG+AGG | 0.616142 | 3.3:+56328036 | MS.gene008450:CDS |
| TTACTTCCTCTACAGTAGGA+TGG | 0.618977 | 3.3:-56328042 | None:intergenic |
| ATTGTTGATAGCAAAATGAG+AGG | 0.619009 | 3.3:+56328163 | MS.gene008450:CDS |
| TGGCATGGTACTCAACGAGA+TGG | 0.637697 | 3.3:+56327379 | MS.gene008450:CDS |
| TATGCTTTATACACCGATGG+AGG | 0.647555 | 3.3:-56327221 | None:intergenic |
| AATGCAAAACCACTCAACAA+GGG | 0.683152 | 3.3:+56327173 | MS.gene008450:CDS |
| TGTTGATAGCAAAATGAGAG+GGG | 0.689070 | 3.3:+56328165 | MS.gene008450:CDS |
| ACTCAACGAGATGGTCCAAG+AGG | 0.710119 | 3.3:+56327388 | MS.gene008450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATTAATAAAAA+GGG | - | chr3.3:56326401-56326420 | None:intergenic | 0.0% |
| !! | TATAAATAATTTATATTATA+CGG | - | chr3.3:56327105-56327124 | None:intergenic | 0.0% |
| !! | TTAAAAAAAAATTAATAAAA+AGG | - | chr3.3:56326402-56326421 | None:intergenic | 0.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:56326514-56326533 | None:intergenic | 100.0% |
| !! | ATAAGGAATCTTTATAAAAA+AGG | - | chr3.3:56327966-56327985 | None:intergenic | 15.0% |
| !! | GATTAAAATGCAATAAATAA+GGG | - | chr3.3:56327740-56327759 | None:intergenic | 15.0% |
| !! | GTTAATCACATTTAAAAATA+TGG | + | chr3.3:56327604-56327623 | MS.gene008450:intron | 15.0% |
| !! | TAAAATAAATAAATATGGGT+GGG | - | chr3.3:56326552-56326571 | None:intergenic | 15.0% |
| !! | TGATTAAAATGCAATAAATA+AGG | - | chr3.3:56327741-56327760 | None:intergenic | 15.0% |
| !! | TTAAAATAAATAAATATGGG+TGG | - | chr3.3:56326553-56326572 | None:intergenic | 15.0% |
| !! | TTTCAAAACAAAAATCTTAT+CGG | + | chr3.3:56327467-56327486 | MS.gene008450:intron | 15.0% |
| !!! | ATTAATAGTGTTGATTTTAA+TGG | - | chr3.3:56327825-56327844 | None:intergenic | 15.0% |
| !!! | TTGATATAAATTTGAAATAC+AGG | - | chr3.3:56325791-56325810 | None:intergenic | 15.0% |
| !! | AAAAACTAGTTAATCAATCA+TGG | + | chr3.3:56326883-56326902 | MS.gene008450:intron | 20.0% |
| !! | AAAATAAATAAATATGGGTG+GGG | - | chr3.3:56326551-56326570 | None:intergenic | 20.0% |
| !! | AAGGTTTAAACTATTGTAAA+AGG | - | chr3.3:56327544-56327563 | None:intergenic | 20.0% |
| !! | ATTGAACGACATTATATTAT+AGG | + | chr3.3:56327885-56327904 | MS.gene008450:intron | 20.0% |
| !! | TAAAACATCCTTATTAGTTA+TGG | - | chr3.3:56327783-56327802 | None:intergenic | 20.0% |
| !!! | AAAGAAGTTGATATAATTAG+TGG | - | chr3.3:56325954-56325973 | None:intergenic | 20.0% |
| !!! | AAAGATTCCTTATAATTTGT+AGG | + | chr3.3:56327973-56327992 | MS.gene008450:intron | 20.0% |
| !!! | AAGAAGTTGATATAATTAGT+GGG | - | chr3.3:56325953-56325972 | None:intergenic | 20.0% |
| !!! | AAGATTCCTTATAATTTGTA+GGG | + | chr3.3:56327974-56327993 | MS.gene008450:intron | 20.0% |
| !!! | AGCAATGAAAACTTTTAAAA+TGG | + | chr3.3:56328102-56328121 | MS.gene008450:CDS | 20.0% |
| !!! | GATTTTGTTATTCAACAATA+GGG | + | chr3.3:56326044-56326063 | MS.gene008450:intron | 20.0% |
| !!! | GCAATGAAAACTTTTAAAAT+GGG | + | chr3.3:56328103-56328122 | MS.gene008450:CDS | 20.0% |
| !!! | TAGATTACCTTATAGTTTTT+AGG | + | chr3.3:56326593-56326612 | MS.gene008450:intron | 20.0% |
| !!! | TATTTGAAGTTCATCTTTTA+TGG | + | chr3.3:56327123-56327142 | MS.gene008450:intron | 20.0% |
| !!! | TCTTTGTTCTTTAATTTGAT+TGG | + | chr3.3:56326929-56326948 | MS.gene008450:intron | 20.0% |
| !!! | TGATTGATTAACTAGTTTTT+AGG | - | chr3.3:56326883-56326902 | None:intergenic | 20.0% |
| ! | AAATAAATAAATATGGGTGG+GGG | - | chr3.3:56326550-56326569 | None:intergenic | 25.0% |
| ! | AATGATAGACATATGATATG+AGG | - | chr3.3:56327493-56327512 | None:intergenic | 25.0% |
| ! | ACGGAATATTACTTAATAAC+TGG | - | chr3.3:56327086-56327105 | None:intergenic | 25.0% |
| ! | ACTAAACCCTACAAATTATA+AGG | - | chr3.3:56327983-56328002 | None:intergenic | 25.0% |
| ! | ACTATTGTAAAAGGAAACTA+AGG | - | chr3.3:56327535-56327554 | None:intergenic | 25.0% |
| ! | AGAATCACAAACAAATTTCT+AGG | + | chr3.3:56326722-56326741 | MS.gene008450:intron | 25.0% |
| ! | ATTTACGCCTAAAAACTATA+AGG | - | chr3.3:56326603-56326622 | None:intergenic | 25.0% |
| ! | CCAAGATTTAAATTTAAGCA+TGG | + | chr3.3:56326022-56326041 | MS.gene008450:intron | 25.0% |
| ! | CCATGCTTAAATTTAAATCT+TGG | - | chr3.3:56326025-56326044 | None:intergenic | 25.0% |
| ! | CTATTGTAAAAGGAAACTAA+GGG | - | chr3.3:56327534-56327553 | None:intergenic | 25.0% |
| ! | TAAACGAGACAAAAAAATTC+AGG | - | chr3.3:56327677-56327696 | None:intergenic | 25.0% |
| ! | TACCATCAACAATATCATTA+TGG | - | chr3.3:56328144-56328163 | None:intergenic | 25.0% |
| ! | TATGATGTTCAAGATATTAG+AGG | - | chr3.3:56325735-56325754 | None:intergenic | 25.0% |
| ! | TGAAATTACTTCTATTCAAG+AGG | + | chr3.3:56327352-56327371 | MS.gene008450:CDS | 25.0% |
| !! | AAAAATATGGTTGATTCAGA+TGG | + | chr3.3:56327617-56327636 | MS.gene008450:intron | 25.0% |
| !! | AAAATATGGTTGATTCAGAT+GGG | + | chr3.3:56327618-56327637 | MS.gene008450:intron | 25.0% |
| !! | AACAAACTATGAGTTTTACA+CGG | - | chr3.3:56327862-56327881 | None:intergenic | 25.0% |
| !! | CACTTTCTTTTTGTCTTTTA+AGG | + | chr3.3:56326829-56326848 | MS.gene008450:intron | 25.0% |
| !! | CACTTTCTTTTTGTCTTTTA+AGG | - | chr3.3:56326848-56326829 | None:intergenic | 25.0% |
| !! | TTCAATTGAGATTCTAGTTA+AGG | + | chr3.3:56326765-56326784 | MS.gene008450:intron | 25.0% |
| !! | TTTGAACCTCTTTTAATAGA+CGG | + | chr3.3:56328217-56328236 | MS.gene008450:CDS | 25.0% |
| !! | TTTGTTTGTGATTCTAGTTA+TGG | - | chr3.3:56326717-56326736 | None:intergenic | 25.0% |
| !!! | GAAAACTTTTAAAATGGGTT+GGG | + | chr3.3:56328108-56328127 | MS.gene008450:CDS | 25.0% |
| !!! | GGATTTTGTTATTCAACAAT+AGG | + | chr3.3:56326043-56326062 | MS.gene008450:intron | 25.0% |
| !!! | TGAAAACTTTTAAAATGGGT+TGG | + | chr3.3:56328107-56328126 | MS.gene008450:CDS | 25.0% |
| !!! | TGTTTTAAAGTAGCTGATTT+AGG | + | chr3.3:56325677-56325696 | MS.gene008450:CDS | 25.0% |
| AAATATGCTTTATACACCGA+TGG | - | chr3.3:56327227-56327246 | None:intergenic | 30.0% | |
| AACAAAGATAAAGAGAGTAG+AGG | - | chr3.3:56326917-56326936 | None:intergenic | 30.0% | |
| AATAAATAAATATGGGTGGG+GGG | - | chr3.3:56326549-56326568 | None:intergenic | 30.0% | |
| AATAGTATCAGATGGTATGA+TGG | + | chr3.3:56327298-56327317 | MS.gene008450:CDS | 30.0% | |
| AATGTGATTAACTAGTTGCA+TGG | - | chr3.3:56327596-56327615 | None:intergenic | 30.0% | |
| ACAACCATTAAAAGTTGTGT+TGG | - | chr3.3:56325660-56325679 | None:intergenic | 30.0% | |
| ACATGTGGAACAAATAAAGA+TGG | - | chr3.3:56327027-56327046 | None:intergenic | 30.0% | |
| AGAACAATCATTAACCAAGA+AGG | + | chr3.3:56326115-56326134 | MS.gene008450:intron | 30.0% | |
| AGGCTCATATCATATTATCA+AGG | + | chr3.3:56326135-56326154 | MS.gene008450:intron | 30.0% | |
| ATCGTTCATTTGAGAACAAA+CGG | + | chr3.3:56326232-56326251 | MS.gene008450:intron | 30.0% | |
| ATGATGGTACTAACATTCAT+TGG | + | chr3.3:56327314-56327333 | MS.gene008450:CDS | 30.0% | |
| ATGGCAATAAACAACAAAAC+AGG | - | chr3.3:56327008-56327027 | None:intergenic | 30.0% | |
| ATTGTATTGCTCTTGACAAA+GGG | + | chr3.3:56328331-56328350 | MS.gene008450:CDS | 30.0% | |
| CAAAGCTTATATTTACCTCT+TGG | - | chr3.3:56327406-56327425 | None:intergenic | 30.0% | |
| CATCAACAATATCATTATGG+AGG | - | chr3.3:56328141-56328160 | None:intergenic | 30.0% | |
| CTCCATAATGATATTGTTGA+TGG | + | chr3.3:56328139-56328158 | MS.gene008450:CDS | 30.0% | |
| GGTTAATGATTGTTCTTAGT+TGG | - | chr3.3:56326111-56326130 | None:intergenic | 30.0% | |
| GTATACTCTTGTAGAAATCA+GGG | - | chr3.3:56325856-56325875 | None:intergenic | 30.0% | |
| TAAATATTTCCCTTGTTGAG+TGG | - | chr3.3:56327185-56327204 | None:intergenic | 30.0% | |
| TAATATGATATGAGCCTTCT+TGG | - | chr3.3:56326132-56326151 | None:intergenic | 30.0% | |
| TATTGTATTGCTCTTGACAA+AGG | + | chr3.3:56328330-56328349 | MS.gene008450:CDS | 30.0% | |
| TCCACTAACCATAACTAATA+AGG | + | chr3.3:56327772-56327791 | MS.gene008450:intron | 30.0% | |
| TCCTTATTAGTTATGGTTAG+TGG | - | chr3.3:56327776-56327795 | None:intergenic | 30.0% | |
| TGTATACTCTTGTAGAAATC+AGG | - | chr3.3:56325857-56325876 | None:intergenic | 30.0% | |
| TTCGAAGAAATAGTATCAGA+TGG | + | chr3.3:56327290-56327309 | MS.gene008450:CDS | 30.0% | |
| ! | AAGAGTATACAACAAGAGAA+AGG | + | chr3.3:56325866-56325885 | MS.gene008450:CDS | 30.0% |
| ! | AGTTCATCTTTTATGGCATT+AGG | + | chr3.3:56327130-56327149 | MS.gene008450:intron | 30.0% |
| ! | ATGTCCAACACAACTTTTAA+TGG | + | chr3.3:56325653-56325672 | MS.gene008450:CDS | 30.0% |
| ! | TTGAACCTCTTTTAATAGAC+GGG | + | chr3.3:56328218-56328237 | MS.gene008450:CDS | 30.0% |
| !! | AGTAATGTTTTAGACCAAGT+TGG | + | chr3.3:56326084-56326103 | MS.gene008450:intron | 30.0% |
| !! | ATTGTTGATAGCAAAATGAG+AGG | + | chr3.3:56328163-56328182 | MS.gene008450:CDS | 30.0% |
| !! | CTTAGTCGTACAATTTTGAT+CGG | + | chr3.3:56326291-56326310 | MS.gene008450:intron | 30.0% |
| !! | TTGTTGATAGCAAAATGAGA+GGG | + | chr3.3:56328164-56328183 | MS.gene008450:CDS | 30.0% |
| AAAATCGAGAAGACAACATG+TGG | - | chr3.3:56327042-56327061 | None:intergenic | 35.0% | |
| AAAGTTGTGTTGGACATCAA+CGG | - | chr3.3:56325650-56325669 | None:intergenic | 35.0% | |
| AAATCAGAATAGAGAAGGTG+TGG | - | chr3.3:56326177-56326196 | None:intergenic | 35.0% | |
| AACATTACTTGACCATCCTA+AGG | - | chr3.3:56326073-56326092 | None:intergenic | 35.0% | |
| AATGCAAAACCACTCAACAA+GGG | + | chr3.3:56327173-56327192 | MS.gene008450:CDS | 35.0% | |
| ACACCAAATCAGAATAGAGA+AGG | - | chr3.3:56326182-56326201 | None:intergenic | 35.0% | |
| ACACCTTCTCTATTCTGATT+TGG | + | chr3.3:56326176-56326195 | MS.gene008450:intron | 35.0% | |
| ACATTACTTGACCATCCTAA+GGG | - | chr3.3:56326072-56326091 | None:intergenic | 35.0% | |
| AGAAGACATCTATTGTGAGA+CGG | - | chr3.3:56327652-56327671 | None:intergenic | 35.0% | |
| AGTCGTCCATAAAAATTTCC+GGG | - | chr3.3:56325926-56325945 | None:intergenic | 35.0% | |
| ATTCCTCCTATTGTCTACAT+TGG | + | chr3.3:56325975-56325994 | MS.gene008450:CDS | 35.0% | |
| CAAGAGAAAGGAGAAAATGT+TGG | + | chr3.3:56325878-56325897 | MS.gene008450:CDS | 35.0% | |
| GAGTCGTCCATAAAAATTTC+CGG | - | chr3.3:56325927-56325946 | None:intergenic | 35.0% | |
| GCATTATTGGCCAAATCTTT+GGG | - | chr3.3:56327158-56327177 | None:intergenic | 35.0% | |
| TAATGCAAAACCACTCAACA+AGG | + | chr3.3:56327172-56327191 | MS.gene008450:CDS | 35.0% | |
| TCATGGATGAATTGTTCTCA+AGG | + | chr3.3:56328254-56328273 | MS.gene008450:CDS | 35.0% | |
| TGATAGCCAATGTAGACAAT+AGG | - | chr3.3:56325984-56326003 | None:intergenic | 35.0% | |
| TGCATTATTGGCCAAATCTT+TGG | - | chr3.3:56327159-56327178 | None:intergenic | 35.0% | |
| TTATGATCCTACTTGATCGA+TGG | - | chr3.3:56326361-56326380 | None:intergenic | 35.0% | |
| TTCTAGGTGAAATTGCAATG+AGG | + | chr3.3:56326738-56326757 | MS.gene008450:intron | 35.0% | |
| TTTGTAGGGTTTAGTTGAAG+AGG | + | chr3.3:56327988-56328007 | MS.gene008450:intron | 35.0% | |
| ! | ATACACTTGCTTGCTAGATT+TGG | + | chr3.3:56326959-56326978 | MS.gene008450:intron | 35.0% |
| ! | TTTGAAATACAGGTGTCTCA+TGG | - | chr3.3:56325781-56325800 | None:intergenic | 35.0% |
| !! | ACTTCTATTCAAGAGGTACT+TGG | + | chr3.3:56327359-56327378 | MS.gene008450:CDS | 35.0% |
| !! | GTTGAGTGGTTTTGCATTAT+TGG | - | chr3.3:56327171-56327190 | None:intergenic | 35.0% |
| !! | TGTTGATAGCAAAATGAGAG+GGG | + | chr3.3:56328165-56328184 | MS.gene008450:CDS | 35.0% |
| AAAAACAGCTCTGTGGTACT+TGG | - | chr3.3:56328200-56328219 | None:intergenic | 40.0% | |
| AACATACCATCCTACTGTAG+AGG | + | chr3.3:56328036-56328055 | MS.gene008450:CDS | 40.0% | |
| ACTTGATCGATGGTGATAGA+AGG | - | chr3.3:56326351-56326370 | None:intergenic | 40.0% | |
| AGAAAGCAGATTTCCTGAAC+AGG | - | chr3.3:56326328-56326347 | None:intergenic | 40.0% | |
| ATCAAGAACAAGTCCTCCAT+CGG | + | chr3.3:56327208-56327227 | MS.gene008450:CDS | 40.0% | |
| CCAAACCCGTCTATTAAAAG+AGG | - | chr3.3:56328226-56328245 | None:intergenic | 40.0% | |
| GGAAGTAAGACAAGTGATTG+AGG | + | chr3.3:56328057-56328076 | MS.gene008450:CDS | 40.0% | |
| TAGCCAATGTAGACAATAGG+AGG | - | chr3.3:56325981-56326000 | None:intergenic | 40.0% | |
| TATGCTTTATACACCGATGG+AGG | - | chr3.3:56327224-56327243 | None:intergenic | 40.0% | |
| TCTACAGTAGGATGGTATGT+TGG | - | chr3.3:56328037-56328056 | None:intergenic | 40.0% | |
| TCTATCACCATCGATCAAGT+AGG | + | chr3.3:56326351-56326370 | MS.gene008450:intron | 40.0% | |
| TGCTTCATAAATGCAACACC+CGG | + | chr3.3:56325905-56325924 | MS.gene008450:CDS | 40.0% | |
| TGTCTTACTTCCTCTACAGT+AGG | - | chr3.3:56328049-56328068 | None:intergenic | 40.0% | |
| TGTTCTTAGTTGGACCAACT+TGG | - | chr3.3:56326101-56326120 | None:intergenic | 40.0% | |
| TTACTTCCTCTACAGTAGGA+TGG | - | chr3.3:56328045-56328064 | None:intergenic | 40.0% | |
| ! | GCAACACCCGGAAATTTTTA+TGG | + | chr3.3:56325917-56325936 | MS.gene008450:CDS | 40.0% |
| ! | GTGTTGAGAGTTGACTTCAA+CGG | - | chr3.3:56326483-56326502 | None:intergenic | 40.0% |
| ! | TGTTGAGAGTTGACTTCAAC+GGG | - | chr3.3:56326482-56326501 | None:intergenic | 40.0% |
| ! | TTCAACAATAGGGTACCCTT+AGG | + | chr3.3:56326054-56326073 | MS.gene008450:intron | 40.0% |
| !! | AGCTGATTTAGGTTGCTCTT+CGG | + | chr3.3:56325688-56325707 | MS.gene008450:CDS | 40.0% |
| !! | CCTCTTTTAATAGACGGGTT+TGG | + | chr3.3:56328223-56328242 | MS.gene008450:CDS | 40.0% |
| !! | CGGGTTTGGTGAAAATATCA+TGG | + | chr3.3:56328237-56328256 | MS.gene008450:CDS | 40.0% |
| !! | TATTCAAGAGGTACTTGGCA+TGG | + | chr3.3:56327364-56327383 | MS.gene008450:CDS | 40.0% |
| AAATAAATATGGGTGGGGGG+TGG | - | chr3.3:56326546-56326565 | None:intergenic | 45.0% | |
| AATAAATATGGGTGGGGGGT+GGG | - | chr3.3:56326545-56326564 | None:intergenic | 45.0% | |
| AGACAAGTGATTGAGGCAGA+AGG | + | chr3.3:56328064-56328083 | MS.gene008450:CDS | 45.0% | |
| CAACACTCAACACCATGGAT+GGG | + | chr3.3:56326452-56326471 | MS.gene008450:intron | 45.0% | |
| CAACTCTCAACACCATGGAT+GGG | + | chr3.3:56326490-56326509 | MS.gene008450:intron | 45.0% | |
| GAAGTCAACTCTCAACACCA+TGG | + | chr3.3:56326485-56326504 | MS.gene008450:intron | 45.0% | |
| GAGATCAACACTCAACACCA+TGG | + | chr3.3:56326447-56326466 | MS.gene008450:intron | 45.0% | |
| GAGGTTCAAAAACAGCTCTG+TGG | - | chr3.3:56328207-56328226 | None:intergenic | 45.0% | |
| GCATTAGGCACCCAAAGATT+TGG | + | chr3.3:56327145-56327164 | MS.gene008450:intron | 45.0% | |
| TCAACACTCAACACCATGGA+TGG | + | chr3.3:56326451-56326470 | MS.gene008450:intron | 45.0% | |
| TCAACTCTCAACACCATGGA+TGG | + | chr3.3:56326489-56326508 | MS.gene008450:intron | 45.0% | |
| ! | ACAATAGGGTACCCTTAGGA+TGG | + | chr3.3:56326058-56326077 | MS.gene008450:intron | 45.0% |
| ! | GAGGTGACCAAAAGTGTGTT+TGG | - | chr3.3:56325716-56325735 | None:intergenic | 45.0% |
| ! | GTTGAGAGTTGACTTCAACG+GGG | - | chr3.3:56326481-56326500 | None:intergenic | 45.0% |
| !! | CTGATTTAGGTTGCTCTTCG+GGG | + | chr3.3:56325690-56325709 | MS.gene008450:CDS | 45.0% |
| !! | GCTGATTTAGGTTGCTCTTC+GGG | + | chr3.3:56325689-56325708 | MS.gene008450:CDS | 45.0% |
| !! | AAAGTTAAAATAAATAAATA+TGG | - | chr3.3:56326557-56326576 | None:intergenic | 5.0% |
| !! | AAGTTAAAATAAATAAATAT+GGG | - | chr3.3:56326556-56326575 | None:intergenic | 5.0% |
| !! | TATCAATATAAATTTATAAA+AGG | - | chr3.3:56327563-56327582 | None:intergenic | 5.0% |
| !!! | AATGTTTAATTTTTATTTTT+AGG | - | chr3.3:56327449-56327468 | None:intergenic | 5.0% |
| ACTCAACGAGATGGTCCAAG+AGG | + | chr3.3:56327388-56327407 | MS.gene008450:CDS | 50.0% | |
| ATAAATATGGGTGGGGGGTG+GGG | - | chr3.3:56326544-56326563 | None:intergenic | 50.0% | |
| TGGCATGGTACTCAACGAGA+TGG | + | chr3.3:56327379-56327398 | MS.gene008450:CDS | 50.0% | |
| ! | GAGAAGGTGTGGATCTAGTG+TGG | - | chr3.3:56326166-56326185 | None:intergenic | 50.0% |
| ! | TTCGGGGCCAAACACACTTT+TGG | + | chr3.3:56325706-56325725 | MS.gene008450:CDS | 50.0% |
| GGACGACTCACATCCTGTTC+AGG | + | chr3.3:56326312-56326331 | MS.gene008450:intron | 55.0% | |
| TAAATATGGGTGGGGGGTGG+GGG | - | chr3.3:56326543-56326562 | None:intergenic | 55.0% | |
| TCAACGGGGTAACCCATCCA+TGG | - | chr3.3:56326467-56326486 | None:intergenic | 55.0% | |
| AAATATGGGTGGGGGGTGGG+GGG | - | chr3.3:56326542-56326561 | None:intergenic | 60.0% | |
| AATATGGGTGGGGGGTGGGG+GGG | - | chr3.3:56326541-56326560 | None:intergenic | 65.0% | |
| ATATGGGTGGGGGGTGGGGG+GGG | - | chr3.3:56326540-56326559 | None:intergenic | 70.0% | |
| TATGGGTGGGGGGTGGGGGG+GGG | - | chr3.3:56326539-56326558 | None:intergenic | 75.0% | |
| ! | ATGGGTGGGGGGTGGGGGGG+GGG | - | chr3.3:56326538-56326557 | None:intergenic | 80.0% |
| ! | GGGGGGGGGGGACCCATCCA+TGG | - | chr3.3:56326505-56326524 | None:intergenic | 80.0% |
| ! | TGGGTGGGGGGTGGGGGGGG+GGG | - | chr3.3:56326537-56326556 | None:intergenic | 85.0% |
| ! | GGGTGGGGGGTGGGGGGGGG+GGG | - | chr3.3:56326536-56326555 | None:intergenic | 90.0% |
| ! | GGTGGGGGGTGGGGGGGGGG+GGG | - | chr3.3:56326535-56326554 | None:intergenic | 90.0% |
| ! | GTGGGGGGTGGGGGGGGGGG+GGG | - | chr3.3:56326534-56326553 | None:intergenic | 90.0% |
| ! | TGGGGGGTGGGGGGGGGGGG+GGG | - | chr3.3:56326533-56326552 | None:intergenic | 90.0% |
| ! | GGGGGGTGGGGGGGGGGGGG+GGG | - | chr3.3:56326532-56326551 | None:intergenic | 95.0% |
| ! | GGGGGTGGGGGGGGGGGGGG+GGG | - | chr3.3:56326531-56326550 | None:intergenic | 95.0% |
| ! | GGGGTGGGGGGGGGGGGGGG+GGG | - | chr3.3:56326530-56326549 | None:intergenic | 95.0% |
| ! | GGGTGGGGGGGGGGGGGGGG+GGG | - | chr3.3:56326529-56326548 | None:intergenic | 95.0% |
| ! | GGTGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:56326528-56326547 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:56326527-56326546 | None:intergenic | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:56326526-56326545 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 56325611 | 56328360 | 56325611 | ID=MS.gene008450 |
| chr3.3 | mRNA | 56325611 | 56328360 | 56325611 | ID=MS.gene008450.t1;Parent=MS.gene008450 |
| chr3.3 | exon | 56325611 | 56326006 | 56325611 | ID=MS.gene008450.t1.exon1;Parent=MS.gene008450.t1 |
| chr3.3 | CDS | 56325611 | 56326006 | 56325611 | ID=cds.MS.gene008450.t1;Parent=MS.gene008450.t1 |
| chr3.3 | exon | 56327152 | 56327409 | 56327152 | ID=MS.gene008450.t1.exon2;Parent=MS.gene008450.t1 |
| chr3.3 | CDS | 56327152 | 56327409 | 56327152 | ID=cds.MS.gene008450.t1;Parent=MS.gene008450.t1 |
| chr3.3 | exon | 56327995 | 56328360 | 56327995 | ID=MS.gene008450.t1.exon3;Parent=MS.gene008450.t1 |
| chr3.3 | CDS | 56327995 | 56328360 | 56327995 | ID=cds.MS.gene008450.t1;Parent=MS.gene008450.t1 |
| Gene Sequence |
| Protein sequence |
