Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037613.t1 | XP_003604791.1 | 95.3 | 358 | 17 | 0 | 1 | 358 | 1 | 358 | 1.20E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037613.t1 | Q9SPV4 | 52.9 | 365 | 157 | 5 | 1 | 358 | 1 | 357 | 6.0e-109 | 395.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037613.t1 | G7JR75 | 95.3 | 358 | 17 | 0 | 1 | 358 | 1 | 358 | 8.4e-197 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024315 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene25135 | PPI |
| MS.gene037613 | MS.gene014262 | PPI |
| MS.gene59406 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene049577 | PPI |
| MS.gene037613 | MS.gene008450 | PPI |
| MS.gene014262 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene033734 | PPI |
| MS.gene037613 | MS.gene033735 | PPI |
| MS.gene52320 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene52303 | PPI |
| MS.gene037613 | MS.gene73290 | PPI |
| MS.gene07908 | MS.gene037613 | PPI |
| MS.gene68796 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene76430 | PPI |
| MS.gene037613 | MS.gene012028 | PPI |
| MS.gene037613 | MS.gene000556 | PPI |
| MS.gene037613 | MS.gene063148 | PPI |
| MS.gene037613 | MS.gene87476 | PPI |
| MS.gene037613 | MS.gene02421 | PPI |
| MS.gene037613 | MS.gene024299 | PPI |
| MS.gene037613 | MS.gene68203 | PPI |
| MS.gene64697 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene033750 | PPI |
| MS.gene037613 | MS.gene73369 | PPI |
| MS.gene99450 | MS.gene037613 | PPI |
| MS.gene033748 | MS.gene037613 | PPI |
| MS.gene024301 | MS.gene037613 | PPI |
| MS.gene037613 | MS.gene010553 | PPI |
| MS.gene037613 | MS.gene024314 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037613.t1 | MTR_4g018820 | 95.251 | 358 | 17 | 0 | 1 | 358 | 1 | 358 | 0.0 | 711 |
| MS.gene037613.t1 | MTR_3g467270 | 80.811 | 370 | 59 | 2 | 1 | 359 | 1 | 369 | 0.0 | 614 |
| MS.gene037613.t1 | MTR_8g076900 | 73.130 | 361 | 94 | 1 | 1 | 358 | 1 | 361 | 0.0 | 557 |
| MS.gene037613.t1 | MTR_8g077040 | 70.000 | 370 | 100 | 2 | 1 | 359 | 1 | 370 | 0.0 | 542 |
| MS.gene037613.t1 | MTR_5g020940 | 64.324 | 370 | 120 | 3 | 1 | 358 | 11 | 380 | 2.80e-180 | 504 |
| MS.gene037613.t1 | MTR_6g056070 | 67.222 | 360 | 114 | 2 | 1 | 359 | 1 | 357 | 2.25e-176 | 494 |
| MS.gene037613.t1 | MTR_8g020690 | 61.560 | 359 | 137 | 1 | 1 | 358 | 1 | 359 | 3.81e-168 | 473 |
| MS.gene037613.t1 | MTR_8g020700 | 60.446 | 359 | 138 | 2 | 1 | 358 | 1 | 356 | 2.57e-160 | 453 |
| MS.gene037613.t1 | MTR_8g076900 | 75.510 | 245 | 60 | 0 | 1 | 245 | 1 | 245 | 8.42e-138 | 392 |
| MS.gene037613.t1 | MTR_8g020700 | 63.137 | 255 | 93 | 1 | 1 | 254 | 1 | 255 | 1.22e-115 | 336 |
| MS.gene037613.t1 | MTR_3g117060 | 45.455 | 374 | 182 | 4 | 1 | 358 | 1 | 368 | 5.70e-112 | 331 |
| MS.gene037613.t1 | MTR_8g077030 | 53.868 | 349 | 79 | 7 | 1 | 347 | 1 | 269 | 6.55e-109 | 328 |
| MS.gene037613.t1 | MTR_3g467560 | 42.779 | 367 | 196 | 5 | 1 | 357 | 25 | 387 | 9.01e-102 | 305 |
| MS.gene037613.t1 | MTR_1g022455 | 43.915 | 378 | 192 | 7 | 1 | 358 | 1 | 378 | 3.30e-99 | 298 |
| MS.gene037613.t1 | MTR_1g022465 | 44.032 | 377 | 192 | 6 | 1 | 358 | 1 | 377 | 2.77e-98 | 296 |
| MS.gene037613.t1 | MTR_5g046110 | 39.178 | 365 | 209 | 3 | 1 | 357 | 61 | 420 | 3.70e-96 | 292 |
| MS.gene037613.t1 | MTR_7g084620 | 42.246 | 374 | 192 | 9 | 1 | 359 | 1 | 365 | 3.01e-95 | 288 |
| MS.gene037613.t1 | MTR_7g084350 | 38.859 | 368 | 207 | 5 | 5 | 359 | 3 | 365 | 3.93e-88 | 270 |
| MS.gene037613.t1 | MTR_7g084330 | 36.857 | 350 | 182 | 10 | 25 | 359 | 8 | 333 | 3.11e-66 | 213 |
| MS.gene037613.t1 | MTR_3g054330 | 36.620 | 355 | 198 | 12 | 1 | 335 | 10 | 357 | 1.68e-57 | 191 |
| MS.gene037613.t1 | MTR_5g093900 | 33.508 | 382 | 223 | 12 | 1 | 356 | 13 | 389 | 6.99e-54 | 182 |
| MS.gene037613.t1 | MTR_3g052700 | 34.254 | 362 | 211 | 11 | 1 | 340 | 13 | 369 | 3.37e-53 | 180 |
| MS.gene037613.t1 | MTR_1g108660 | 36.111 | 324 | 173 | 10 | 26 | 335 | 9 | 312 | 4.40e-51 | 173 |
| MS.gene037613.t1 | MTR_6g015620 | 37.903 | 124 | 65 | 2 | 245 | 358 | 16 | 137 | 2.17e-20 | 86.7 |
| MS.gene037613.t1 | MTR_7g084340 | 30.469 | 128 | 82 | 2 | 237 | 357 | 2 | 129 | 1.19e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037613.t1 | AT1G19640 | 44.444 | 387 | 185 | 6 | 1 | 357 | 1 | 387 | 4.78e-99 | 298 |
| MS.gene037613.t1 | AT3G11480 | 41.737 | 357 | 203 | 3 | 4 | 358 | 26 | 379 | 1.32e-96 | 292 |
| MS.gene037613.t1 | AT4G36470 | 40.771 | 363 | 198 | 5 | 9 | 358 | 12 | 370 | 3.40e-94 | 286 |
| MS.gene037613.t1 | AT5G66430 | 40.833 | 360 | 197 | 5 | 9 | 358 | 1 | 354 | 3.04e-93 | 283 |
| MS.gene037613.t1 | AT5G04380 | 40.496 | 363 | 198 | 5 | 6 | 358 | 35 | 389 | 7.33e-92 | 280 |
| MS.gene037613.t1 | AT5G04370 | 42.105 | 361 | 191 | 6 | 7 | 358 | 39 | 390 | 1.04e-91 | 280 |
| MS.gene037613.t1 | AT5G04370 | 42.105 | 361 | 191 | 6 | 7 | 358 | 44 | 395 | 2.04e-91 | 280 |
| MS.gene037613.t1 | AT5G04370 | 42.105 | 361 | 191 | 6 | 7 | 358 | 58 | 409 | 2.17e-91 | 280 |
| MS.gene037613.t1 | AT3G21950 | 41.935 | 372 | 191 | 6 | 6 | 358 | 3 | 368 | 2.96e-88 | 270 |
| MS.gene037613.t1 | AT5G38020 | 41.081 | 370 | 197 | 6 | 6 | 358 | 3 | 368 | 1.10e-87 | 269 |
| MS.gene037613.t1 | AT5G04380 | 39.945 | 363 | 193 | 6 | 6 | 358 | 31 | 378 | 2.31e-87 | 268 |
| MS.gene037613.t1 | AT5G04380 | 41.304 | 322 | 178 | 3 | 43 | 358 | 2 | 318 | 5.07e-86 | 263 |
| MS.gene037613.t1 | AT2G14060 | 40.164 | 366 | 202 | 6 | 6 | 358 | 11 | 372 | 1.10e-85 | 264 |
| MS.gene037613.t1 | AT3G21950 | 38.861 | 404 | 190 | 7 | 6 | 358 | 3 | 400 | 2.18e-82 | 256 |
| MS.gene037613.t1 | AT5G38020 | 41.590 | 327 | 171 | 5 | 48 | 358 | 7 | 329 | 5.55e-81 | 250 |
| MS.gene037613.t1 | AT2G14060 | 45.175 | 228 | 121 | 2 | 6 | 232 | 11 | 235 | 5.88e-64 | 204 |
| MS.gene037613.t1 | AT1G68040 | 37.283 | 346 | 188 | 10 | 7 | 338 | 11 | 341 | 1.11e-60 | 199 |
| MS.gene037613.t1 | AT1G15125 | 34.911 | 338 | 189 | 11 | 9 | 333 | 1 | 320 | 2.04e-55 | 185 |
| MS.gene037613.t1 | AT5G55250 | 34.670 | 349 | 208 | 10 | 1 | 332 | 13 | 358 | 1.30e-53 | 181 |
| MS.gene037613.t1 | AT5G37970 | 36.340 | 377 | 197 | 15 | 5 | 358 | 6 | 362 | 5.09e-53 | 179 |
| MS.gene037613.t1 | AT5G37990 | 35.904 | 376 | 200 | 13 | 5 | 358 | 6 | 362 | 2.00e-52 | 177 |
| MS.gene037613.t1 | AT5G38100 | 35.593 | 354 | 194 | 11 | 3 | 340 | 4 | 339 | 6.64e-52 | 176 |
| MS.gene037613.t1 | AT5G38780 | 34.551 | 356 | 197 | 12 | 3 | 340 | 4 | 341 | 2.36e-51 | 175 |
| MS.gene037613.t1 | AT5G55250 | 35.410 | 305 | 179 | 9 | 43 | 332 | 19 | 320 | 3.49e-49 | 169 |
| MS.gene037613.t1 | AT5G38100 | 37.954 | 303 | 157 | 10 | 51 | 340 | 32 | 316 | 4.45e-49 | 168 |
| MS.gene037613.t1 | AT4G26420 | 32.861 | 353 | 202 | 12 | 5 | 333 | 9 | 350 | 3.14e-48 | 167 |
| MS.gene037613.t1 | AT5G38780 | 35.855 | 304 | 163 | 10 | 51 | 340 | 7 | 292 | 3.18e-48 | 165 |
| MS.gene037613.t1 | AT5G56300 | 31.161 | 353 | 209 | 11 | 5 | 334 | 20 | 361 | 3.95e-47 | 164 |
| MS.gene037613.t1 | AT3G44840 | 34.030 | 335 | 193 | 9 | 9 | 334 | 7 | 322 | 2.21e-44 | 156 |
| MS.gene037613.t1 | AT3G44870 | 36.140 | 285 | 156 | 9 | 9 | 284 | 7 | 274 | 2.09e-38 | 141 |
| MS.gene037613.t1 | AT3G44860 | 35.088 | 285 | 162 | 8 | 9 | 284 | 7 | 277 | 1.16e-37 | 138 |
| MS.gene037613.t1 | AT1G66700 | 29.851 | 335 | 202 | 10 | 9 | 330 | 9 | 323 | 1.71e-37 | 138 |
| MS.gene037613.t1 | AT1G66720 | 29.111 | 371 | 230 | 10 | 1 | 358 | 1 | 351 | 2.54e-37 | 137 |
| MS.gene037613.t1 | AT4G26420 | 36.328 | 256 | 137 | 9 | 5 | 243 | 9 | 255 | 3.35e-37 | 135 |
| MS.gene037613.t1 | AT4G26420 | 36.111 | 252 | 135 | 9 | 9 | 243 | 1 | 243 | 7.43e-36 | 131 |
| MS.gene037613.t1 | AT1G15125 | 35.075 | 268 | 141 | 11 | 9 | 263 | 1 | 248 | 2.20e-35 | 130 |
| MS.gene037613.t1 | AT1G66690 | 30.029 | 343 | 207 | 10 | 1 | 330 | 1 | 323 | 3.37e-34 | 129 |
| MS.gene037613.t1 | AT5G38100 | 36.576 | 257 | 134 | 9 | 3 | 243 | 4 | 247 | 4.45e-34 | 126 |
| MS.gene037613.t1 | AT5G38100 | 36.576 | 257 | 134 | 9 | 3 | 243 | 4 | 247 | 4.67e-34 | 126 |
| MS.gene037613.t1 | AT1G66700 | 32.296 | 257 | 148 | 8 | 1 | 245 | 1 | 243 | 7.46e-28 | 110 |
Find 74 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTT+TGG | 0.137193 | 4.3:+80329205 | MS.gene037613:CDS |
| TGCTACTTCTCTGGTGTTCC+TGG | 0.206346 | 4.3:+80329421 | MS.gene037613:CDS |
| ATTGGAATGCTCTTGATAAT+TGG | 0.222028 | 4.3:+80330362 | MS.gene037613:CDS |
| TAGAGGTTTCTGAAGTAAAT+TGG | 0.228818 | 4.3:+80330344 | MS.gene037613:CDS |
| GGCTATGGCTCTTAATGATA+TGG | 0.252043 | 4.3:+80329844 | MS.gene037613:CDS |
| TCTGCAATTGCCAAGCTTCT+AGG | 0.255654 | 4.3:-80329187 | None:intergenic |
| TGGAAAGATCCTACCATAAA+AGG | 0.266724 | 4.3:-80329446 | None:intergenic |
| ATGGTTTCCTAGTCATCATT+AGG | 0.273813 | 4.3:-80330552 | None:intergenic |
| CAGTCTTCAATGGCTATCTA+AGG | 0.306294 | 4.3:+80329501 | MS.gene037613:CDS |
| GATGGAGATGGATAATAGTT+AGG | 0.322863 | 4.3:-80330271 | None:intergenic |
| TACGTCGTTGAAATCATTTC+CGG | 0.326519 | 4.3:-80329335 | None:intergenic |
| AATGAAATGGAAACTGAAAT+TGG | 0.328169 | 4.3:+80329394 | MS.gene037613:CDS |
| TTCTTCAACACTTCCATTCA+TGG | 0.347205 | 4.3:-80328661 | None:intergenic |
| GCAAGGAGTCTGGTTACATT+TGG | 0.347649 | 4.3:+80329813 | MS.gene037613:CDS |
| GGCTGTGGCTGAACCATTGC+TGG | 0.354555 | 4.3:+80330426 | MS.gene037613:CDS |
| TTGGAATGCTCTTGATAATT+GGG | 0.367672 | 4.3:+80330363 | MS.gene037613:CDS |
| AAGCTTGGCAATTGCAGACT+TGG | 0.398822 | 4.3:+80329192 | MS.gene037613:CDS |
| ACCGCCTTCAACTAGTTCTT+CGG | 0.402814 | 4.3:-80329744 | None:intergenic |
| CAAGGAGTCTGGTTACATTT+GGG | 0.403447 | 4.3:+80329814 | MS.gene037613:CDS |
| TGGTTTCCTAGTCATCATTA+GGG | 0.408825 | 4.3:-80330551 | None:intergenic |
| GTTGTTGTATAGACTGGTTA+TGG | 0.412597 | 4.3:-80329158 | None:intergenic |
| TGCAAACAACTCCTTACTTC+AGG | 0.420015 | 4.3:+80328692 | MS.gene037613:CDS |
| GAGATCACCAAGAAAGTGTT+TGG | 0.420623 | 4.3:-80329229 | None:intergenic |
| TTGTGGGGCTTGTGCTCGTC+AGG | 0.429558 | 4.3:-80329658 | None:intergenic |
| ACAATGTGGCACAATGCATA+AGG | 0.440440 | 4.3:+80330404 | MS.gene037613:CDS |
| TAACCAGACTCCTTGCTCAT+TGG | 0.441325 | 4.3:-80329806 | None:intergenic |
| ACGTCGTTGAAATCATTTCC+GGG | 0.444881 | 4.3:-80329334 | None:intergenic |
| TTGTTGTTGTCTCCAACCTC+AGG | 0.451713 | 4.3:-80329623 | None:intergenic |
| TTTGTATAGATTCCTGAGGT+TGG | 0.452696 | 4.3:+80329611 | MS.gene037613:intron |
| AATTGGGATCAATTTAATGA+TGG | 0.454125 | 4.3:+80330379 | MS.gene037613:CDS |
| TAGCCATTGAAGACTGTAAG+AGG | 0.461670 | 4.3:-80329494 | None:intergenic |
| ATTGGCCCATGCTACTTCTC+TGG | 0.462271 | 4.3:+80329412 | MS.gene037613:CDS |
| TGAAACTATTGAGTTTCTCT+TGG | 0.465227 | 4.3:-80330243 | None:intergenic |
| ATCTCCATCTGAGGTGAAGT+TGG | 0.465780 | 4.3:+80330285 | MS.gene037613:CDS |
| GGTGATCTCTGAAATTATCA+AGG | 0.471395 | 4.3:+80329243 | MS.gene037613:CDS |
| AAGCCCCACAAGTGTCTTCG+AGG | 0.472936 | 4.3:+80329670 | MS.gene037613:CDS |
| AGTCATCATTAGGGTAAGAT+TGG | 0.479471 | 4.3:-80330542 | None:intergenic |
| CCATTGCTGGTTAGTCACTT+TGG | 0.497066 | 4.3:+80330439 | MS.gene037613:CDS |
| ACCTCCAACTTCACCTCAGA+TGG | 0.497521 | 4.3:-80330289 | None:intergenic |
| TAAGCCTCGAAGACACTTGT+GGG | 0.498959 | 4.3:-80329674 | None:intergenic |
| ATGGAGATGGATAATAGTTA+GGG | 0.500415 | 4.3:-80330270 | None:intergenic |
| CACACTATATACCTGAAGTA+AGG | 0.501345 | 4.3:-80328703 | None:intergenic |
| GATCCAATGAGCAAGGAGTC+TGG | 0.501900 | 4.3:+80329803 | MS.gene037613:CDS |
| ATTCCTCTTACAGTCTTCAA+TGG | 0.509521 | 4.3:+80329491 | MS.gene037613:CDS |
| AAGTGTGTTGTTGTATAGAC+TGG | 0.514169 | 4.3:-80329164 | None:intergenic |
| AGCTTGGCAATTGCAGACTT+GGG | 0.522866 | 4.3:+80329193 | MS.gene037613:CDS |
| CTGGTTAGTCACTTTGGTGA+AGG | 0.524926 | 4.3:+80330445 | MS.gene037613:CDS |
| CAATGTGGCACAATGCATAA+GGG | 0.527168 | 4.3:+80330405 | MS.gene037613:CDS |
| TGGTTACATTTGGGAACTCA+TGG | 0.530184 | 4.3:+80329823 | MS.gene037613:CDS |
| CATTTGGGAACTCATGGCTA+TGG | 0.530934 | 4.3:+80329829 | MS.gene037613:CDS |
| ATCCTACCATAAAAGGATCC+AGG | 0.532082 | 4.3:-80329439 | None:intergenic |
| CAACACACTTCCTAGAAGCT+TGG | 0.551062 | 4.3:+80329177 | MS.gene037613:CDS |
| TCTTCAACACTTCCATTCAT+GGG | 0.552017 | 4.3:-80328660 | None:intergenic |
| AACTTCACCTCAGATGGAGA+TGG | 0.552257 | 4.3:-80330283 | None:intergenic |
| AAGTTGGAGGTTCTCAATGA+AGG | 0.555655 | 4.3:+80330301 | MS.gene037613:CDS |
| TCCATCTGAGGTGAAGTTGG+AGG | 0.559779 | 4.3:+80330288 | MS.gene037613:CDS |
| ACTCAGGTACTACCCATGAA+TGG | 0.562098 | 4.3:+80328648 | MS.gene037613:CDS |
| ATTCTCCGTCACTCGACTAG+AGG | 0.567185 | 4.3:+80330327 | MS.gene037613:CDS |
| CGTGCCGAAGAACTAGTTGA+AGG | 0.571534 | 4.3:+80329740 | MS.gene037613:CDS |
| GGAACACCAGAGAAGTAGCA+TGG | 0.591913 | 4.3:-80329418 | None:intergenic |
| AAACAGTGATCCAATGAGCA+AGG | 0.603825 | 4.3:+80329796 | MS.gene037613:CDS |
| CTATTATCCATCTCCATCTG+AGG | 0.607939 | 4.3:+80330276 | MS.gene037613:CDS |
| ATAAGCCTCGAAGACACTTG+TGG | 0.608093 | 4.3:-80329675 | None:intergenic |
| ATCTTACCCTAATGATGACT+AGG | 0.614467 | 4.3:+80330545 | MS.gene037613:CDS |
| CCAAAGTGACTAACCAGCAA+TGG | 0.615902 | 4.3:-80330439 | None:intergenic |
| GAACACCAGAGAAGTAGCAT+GGG | 0.633213 | 4.3:-80329417 | None:intergenic |
| TCTATTTGTATAGATTCCTG+AGG | 0.634224 | 4.3:+80329607 | MS.gene037613:intron |
| AGAAACCTCTAGTCGAGTGA+CGG | 0.635116 | 4.3:-80330332 | None:intergenic |
| GGCACAATGCATAAGGGCTG+TGG | 0.641920 | 4.3:+80330411 | MS.gene037613:CDS |
| TGAGGTTGGAGACAACAACA+AGG | 0.675984 | 4.3:+80329625 | MS.gene037613:CDS |
| ATTTAATGATGGATACAATG+TGG | 0.700017 | 4.3:+80330390 | MS.gene037613:CDS |
| GCCGAAGAACTAGTTGAAGG+CGG | 0.705707 | 4.3:+80329743 | MS.gene037613:CDS |
| AAGCCTCGAAGACACTTGTG+GGG | 0.709354 | 4.3:-80329673 | None:intergenic |
| GAGGTTGGAGACAACAACAA+GGG | 0.731016 | 4.3:+80329626 | MS.gene037613:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTCATATTAATTTAAAA+AGG | + | chr4.3:80329925-80329944 | MS.gene037613:intron | 10.0% |
| !!! | TAAATTCTTCTATTTTAAAA+TGG | + | chr4.3:80328917-80328936 | MS.gene037613:intron | 10.0% |
| !! | AAAATAGAAGAATTTATTGT+TGG | - | chr4.3:80328913-80328932 | None:intergenic | 15.0% |
| !! | ATAGAGAAAAATTTATATTG+TGG | - | chr4.3:80329581-80329600 | None:intergenic | 15.0% |
| !! | GGTATCATGATAATATTAAT+AGG | - | chr4.3:80328742-80328761 | None:intergenic | 20.0% |
| !! | TTATTGAAGTTGTCTAATAT+GGG | + | chr4.3:80328881-80328900 | MS.gene037613:intron | 20.0% |
| !! | TTCAAAAAGACTTTATATTC+AGG | - | chr4.3:80329307-80329326 | None:intergenic | 20.0% |
| !! | TTTATTGAAGTTGTCTAATA+TGG | + | chr4.3:80328880-80328899 | MS.gene037613:intron | 20.0% |
| !!! | AATACAAAATTGCTCTTTTT+GGG | + | chr4.3:80330058-80330077 | MS.gene037613:intron | 20.0% |
| !!! | AATCGCTATAAGAAAATTTT+AGG | + | chr4.3:80330487-80330506 | MS.gene037613:CDS | 20.0% |
| !!! | TTCTATGACCATTTTTAAAT+GGG | - | chr4.3:80330122-80330141 | None:intergenic | 20.0% |
| ! | AAATTTGAATATACAGCGAA+AGG | + | chr4.3:80329102-80329121 | MS.gene037613:intron | 25.0% |
| ! | AATGAAATGGAAACTGAAAT+TGG | + | chr4.3:80329394-80329413 | MS.gene037613:CDS | 25.0% |
| ! | AATTCGATAACTTTAGATGA+AGG | - | chr4.3:80328763-80328782 | None:intergenic | 25.0% |
| ! | AATTGGGATCAATTTAATGA+TGG | + | chr4.3:80330379-80330398 | MS.gene037613:CDS | 25.0% |
| ! | AGAAAAACTACGTAATGAAA+TGG | + | chr4.3:80329381-80329400 | MS.gene037613:CDS | 25.0% |
| ! | TAACATGACCCATTTAAAAA+TGG | + | chr4.3:80330111-80330130 | MS.gene037613:intron | 25.0% |
| !! | ACAAAATGCAAACTTTTATC+TGG | - | chr4.3:80329469-80329488 | None:intergenic | 25.0% |
| !! | ATTACGTAGTTTTTCTTTGA+AGG | - | chr4.3:80329377-80329396 | None:intergenic | 25.0% |
| !! | CAATACAAAATTGCTCTTTT+TGG | + | chr4.3:80330057-80330076 | MS.gene037613:intron | 25.0% |
| !! | CACATGATTCTAACATTTTT+AGG | + | chr4.3:80329767-80329786 | MS.gene037613:CDS | 25.0% |
| !!! | ATTTAATGATGGATACAATG+TGG | + | chr4.3:80330390-80330409 | MS.gene037613:CDS | 25.0% |
| !!! | GTTCTATGACCATTTTTAAA+TGG | - | chr4.3:80330123-80330142 | None:intergenic | 25.0% |
| ATGGAGATGGATAATAGTTA+GGG | - | chr4.3:80330273-80330292 | None:intergenic | 30.0% | |
| GTGGCGAAACATTTATTAAA+TGG | - | chr4.3:80329562-80329581 | None:intergenic | 30.0% | |
| TAACATGAACCTCTCAAAAA+AGG | - | chr4.3:80328964-80328983 | None:intergenic | 30.0% | |
| TCTATTTGTATAGATTCCTG+AGG | + | chr4.3:80329607-80329626 | MS.gene037613:intron | 30.0% | |
| TGAAACTATTGAGTTTCTCT+TGG | - | chr4.3:80330246-80330265 | None:intergenic | 30.0% | |
| TGAACAAAATGTGCAATCTA+TGG | - | chr4.3:80329912-80329931 | None:intergenic | 30.0% | |
| ! | ATTGGAATGCTCTTGATAAT+TGG | + | chr4.3:80330362-80330381 | MS.gene037613:CDS | 30.0% |
| ! | TTGGAATGCTCTTGATAATT+GGG | + | chr4.3:80330363-80330382 | MS.gene037613:CDS | 30.0% |
| !! | TAGAGGTTTCTGAAGTAAAT+TGG | + | chr4.3:80330344-80330363 | MS.gene037613:CDS | 30.0% |
| !! | TCTTAATGATATGGTTTTGC+AGG | + | chr4.3:80329853-80329872 | MS.gene037613:CDS | 30.0% |
| !!! | GGTTTGTTATCTTAGTCTTT+TGG | + | chr4.3:80329522-80329541 | MS.gene037613:intron | 30.0% |
| !!! | TTTTTCTTTGAAGGTGTCAA+GGG | - | chr4.3:80329368-80329387 | None:intergenic | 30.0% |
| AGTCATCATTAGGGTAAGAT+TGG | - | chr4.3:80330545-80330564 | None:intergenic | 35.0% | |
| ATATGCATTGTTATGCTGCA+GGG | + | chr4.3:80330211-80330230 | MS.gene037613:intron | 35.0% | |
| ATCTTACCCTAATGATGACT+AGG | + | chr4.3:80330545-80330564 | MS.gene037613:CDS | 35.0% | |
| ATGGTTTCCTAGTCATCATT+AGG | - | chr4.3:80330555-80330574 | None:intergenic | 35.0% | |
| ATTCCTCTTACAGTCTTCAA+TGG | + | chr4.3:80329491-80329510 | MS.gene037613:CDS | 35.0% | |
| CACACTATATACCTGAAGTA+AGG | - | chr4.3:80328706-80328725 | None:intergenic | 35.0% | |
| GAAGTTGTCTAATATGGGTT+CGG | + | chr4.3:80328886-80328905 | MS.gene037613:intron | 35.0% | |
| GATGGAGATGGATAATAGTT+AGG | - | chr4.3:80330274-80330293 | None:intergenic | 35.0% | |
| TACGTCGTTGAAATCATTTC+CGG | - | chr4.3:80329338-80329357 | None:intergenic | 35.0% | |
| TATATGCATTGTTATGCTGC+AGG | + | chr4.3:80330210-80330229 | MS.gene037613:intron | 35.0% | |
| TCTCAAAAAAGGTCTACATC+AGG | - | chr4.3:80328953-80328972 | None:intergenic | 35.0% | |
| TCTTCAACACTTCCATTCAT+GGG | - | chr4.3:80328663-80328682 | None:intergenic | 35.0% | |
| TGGAAAGATCCTACCATAAA+AGG | - | chr4.3:80329449-80329468 | None:intergenic | 35.0% | |
| TGGTTTCCTAGTCATCATTA+GGG | - | chr4.3:80330554-80330573 | None:intergenic | 35.0% | |
| TTCTTCAACACTTCCATTCA+TGG | - | chr4.3:80328664-80328683 | None:intergenic | 35.0% | |
| TTTGTATAGATTCCTGAGGT+TGG | + | chr4.3:80329611-80329630 | MS.gene037613:intron | 35.0% | |
| ! | AAGTGTGTTGTTGTATAGAC+TGG | - | chr4.3:80329167-80329186 | None:intergenic | 35.0% |
| ! | GTTGTTGTATAGACTGGTTA+TGG | - | chr4.3:80329161-80329180 | None:intergenic | 35.0% |
| ! | TTTTGGACCAAACACTTTCT+TGG | + | chr4.3:80329222-80329241 | MS.gene037613:CDS | 35.0% |
| !! | AAATGTTAATTTGTGCCCTC+AGG | + | chr4.3:80329949-80329968 | MS.gene037613:intron | 35.0% |
| !! | GGTGATCTCTGAAATTATCA+AGG | + | chr4.3:80329243-80329262 | MS.gene037613:CDS | 35.0% |
| !!! | GTTTTTCTTTGAAGGTGTCA+AGG | - | chr4.3:80329369-80329388 | None:intergenic | 35.0% |
| !!! | TGATGTAGACCTTTTTTGAG+AGG | + | chr4.3:80328952-80328971 | MS.gene037613:intron | 35.0% |
| AAACAGTGATCCAATGAGCA+AGG | + | chr4.3:80329796-80329815 | MS.gene037613:CDS | 40.0% | |
| AAGTTGGAGGTTCTCAATGA+AGG | + | chr4.3:80330301-80330320 | MS.gene037613:CDS | 40.0% | |
| ACAATGTGGCACAATGCATA+AGG | + | chr4.3:80330404-80330423 | MS.gene037613:CDS | 40.0% | |
| ACGTCGTTGAAATCATTTCC+GGG | - | chr4.3:80329337-80329356 | None:intergenic | 40.0% | |
| ATCCTACCATAAAAGGATCC+AGG | - | chr4.3:80329442-80329461 | None:intergenic | 40.0% | |
| CAAAAAAGGTCTACATCAGG+TGG | - | chr4.3:80328950-80328969 | None:intergenic | 40.0% | |
| CAAGGAGTCTGGTTACATTT+GGG | + | chr4.3:80329814-80329833 | MS.gene037613:CDS | 40.0% | |
| CAATGTGGCACAATGCATAA+GGG | + | chr4.3:80330405-80330424 | MS.gene037613:CDS | 40.0% | |
| CAGTCTTCAATGGCTATCTA+AGG | + | chr4.3:80329501-80329520 | MS.gene037613:CDS | 40.0% | |
| CTATTATCCATCTCCATCTG+AGG | + | chr4.3:80330276-80330295 | MS.gene037613:CDS | 40.0% | |
| GGCTATGGCTCTTAATGATA+TGG | + | chr4.3:80329844-80329863 | MS.gene037613:CDS | 40.0% | |
| TAGCCATTGAAGACTGTAAG+AGG | - | chr4.3:80329497-80329516 | None:intergenic | 40.0% | |
| TGCAAACAACTCCTTACTTC+AGG | + | chr4.3:80328692-80328711 | MS.gene037613:CDS | 40.0% | |
| TGGTTACATTTGGGAACTCA+TGG | + | chr4.3:80329823-80329842 | MS.gene037613:CDS | 40.0% | |
| TGTGCAATCTATGGTTCTTG+TGG | - | chr4.3:80329903-80329922 | None:intergenic | 40.0% | |
| TTCCTTAACATGTGCCCAAA+GGG | + | chr4.3:80330081-80330100 | MS.gene037613:intron | 40.0% | |
| ! | GTCTTTTTGAACGATCTACC+CGG | + | chr4.3:80329316-80329335 | MS.gene037613:CDS | 40.0% |
| ! | TTCCTGGATCCTTTTATGGT+AGG | + | chr4.3:80329437-80329456 | MS.gene037613:CDS | 40.0% |
| !! | CATGTTAACTTGTGCCCTTT+GGG | - | chr4.3:80330098-80330117 | None:intergenic | 40.0% |
| !! | GAGATCACCAAGAAAGTGTT+TGG | - | chr4.3:80329232-80329251 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+TGG | - | chr4.3:80330099-80330118 | None:intergenic | 40.0% |
| AACTTCACCTCAGATGGAGA+TGG | - | chr4.3:80330286-80330305 | None:intergenic | 45.0% | |
| AAGCTTGGCAATTGCAGACT+TGG | + | chr4.3:80329192-80329211 | MS.gene037613:CDS | 45.0% | |
| ACTCAGGTACTACCCATGAA+TGG | + | chr4.3:80328648-80328667 | MS.gene037613:CDS | 45.0% | |
| AGAAACCTCTAGTCGAGTGA+CGG | - | chr4.3:80330335-80330354 | None:intergenic | 45.0% | |
| AGCTTGGCAATTGCAGACTT+GGG | + | chr4.3:80329193-80329212 | MS.gene037613:CDS | 45.0% | |
| ATAAGCCTCGAAGACACTTG+TGG | - | chr4.3:80329678-80329697 | None:intergenic | 45.0% | |
| CAACACACTTCCTAGAAGCT+TGG | + | chr4.3:80329177-80329196 | MS.gene037613:CDS | 45.0% | |
| CATTTGGGAACTCATGGCTA+TGG | + | chr4.3:80329829-80329848 | MS.gene037613:CDS | 45.0% | |
| CCAAAGTGACTAACCAGCAA+TGG | - | chr4.3:80330442-80330461 | None:intergenic | 45.0% | |
| GAACACCAGAGAAGTAGCAT+GGG | - | chr4.3:80329420-80329439 | None:intergenic | 45.0% | |
| GAGGTTGGAGACAACAACAA+GGG | + | chr4.3:80329626-80329645 | MS.gene037613:CDS | 45.0% | |
| GCAAGGAGTCTGGTTACATT+TGG | + | chr4.3:80329813-80329832 | MS.gene037613:CDS | 45.0% | |
| GTTCCTTAACATGTGCCCAA+AGG | + | chr4.3:80330080-80330099 | MS.gene037613:intron | 45.0% | |
| TAACCAGACTCCTTGCTCAT+TGG | - | chr4.3:80329809-80329828 | None:intergenic | 45.0% | |
| TAAGCCTCGAAGACACTTGT+GGG | - | chr4.3:80329677-80329696 | None:intergenic | 45.0% | |
| TCCTTAACATGTGCTCCTGA+GGG | - | chr4.3:80329967-80329986 | None:intergenic | 45.0% | |
| TCTGCAATTGCCAAGCTTCT+AGG | - | chr4.3:80329190-80329209 | None:intergenic | 45.0% | |
| TGAGGTTGGAGACAACAACA+AGG | + | chr4.3:80329625-80329644 | MS.gene037613:CDS | 45.0% | |
| TTCCTTAACATGTGCTCCTG+AGG | - | chr4.3:80329968-80329987 | None:intergenic | 45.0% | |
| ! | ACCGCCTTCAACTAGTTCTT+CGG | - | chr4.3:80329747-80329766 | None:intergenic | 45.0% |
| ! | ATCTCCATCTGAGGTGAAGT+TGG | + | chr4.3:80330285-80330304 | MS.gene037613:CDS | 45.0% |
| ! | CCATTGCTGGTTAGTCACTT+TGG | + | chr4.3:80330439-80330458 | MS.gene037613:CDS | 45.0% |
| ! | CTGGTTAGTCACTTTGGTGA+AGG | + | chr4.3:80330445-80330464 | MS.gene037613:CDS | 45.0% |
| ! | GGTGTTCCTGGATCCTTTTA+TGG | + | chr4.3:80329433-80329452 | MS.gene037613:CDS | 45.0% |
| ! | TTGTTGTTGTCTCCAACCTC+AGG | - | chr4.3:80329626-80329645 | None:intergenic | 45.0% |
| !!! | TAATTATTTAAAGTATATTA+TGG | + | chr4.3:80329062-80329081 | MS.gene037613:intron | 5.0% |
| AAGCCTCGAAGACACTTGTG+GGG | - | chr4.3:80329676-80329695 | None:intergenic | 50.0% | |
| ACCTCCAACTTCACCTCAGA+TGG | - | chr4.3:80330292-80330311 | None:intergenic | 50.0% | |
| ATTCTCCGTCACTCGACTAG+AGG | + | chr4.3:80330327-80330346 | MS.gene037613:CDS | 50.0% | |
| CGTGCCGAAGAACTAGTTGA+AGG | + | chr4.3:80329740-80329759 | MS.gene037613:CDS | 50.0% | |
| GATCCAATGAGCAAGGAGTC+TGG | + | chr4.3:80329803-80329822 | MS.gene037613:CDS | 50.0% | |
| GCCGAAGAACTAGTTGAAGG+CGG | + | chr4.3:80329743-80329762 | MS.gene037613:CDS | 50.0% | |
| GGAACACCAGAGAAGTAGCA+TGG | - | chr4.3:80329421-80329440 | None:intergenic | 50.0% | |
| TGCCCTTTGGGCACATGTTA+AGG | - | chr4.3:80330086-80330105 | None:intergenic | 50.0% | |
| ! | ATTGGCCCATGCTACTTCTC+TGG | + | chr4.3:80329412-80329431 | MS.gene037613:CDS | 50.0% |
| ! | TCCATCTGAGGTGAAGTTGG+AGG | + | chr4.3:80330288-80330307 | MS.gene037613:CDS | 50.0% |
| ! | TGCTACTTCTCTGGTGTTCC+TGG | + | chr4.3:80329421-80329440 | MS.gene037613:CDS | 50.0% |
| !! | GCAGACTTGGGTTGCTCTTT+TGG | + | chr4.3:80329205-80329224 | MS.gene037613:CDS | 50.0% |
| AAGCCCCACAAGTGTCTTCG+AGG | + | chr4.3:80329670-80329689 | MS.gene037613:CDS | 55.0% | |
| GGCACAATGCATAAGGGCTG+TGG | + | chr4.3:80330411-80330430 | MS.gene037613:CDS | 55.0% | |
| ! | GCCCTCAGGAGCACATGTTA+AGG | + | chr4.3:80329963-80329982 | MS.gene037613:intron | 55.0% |
| GGCTGTGGCTGAACCATTGC+TGG | + | chr4.3:80330426-80330445 | MS.gene037613:CDS | 60.0% | |
| TTGTGGGGCTTGTGCTCGTC+AGG | - | chr4.3:80329661-80329680 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 80328639 | 80330576 | 80328639 | ID=MS.gene037613 |
| chr4.3 | mRNA | 80328639 | 80330576 | 80328639 | ID=MS.gene037613.t1;Parent=MS.gene037613 |
| chr4.3 | exon | 80328639 | 80328713 | 80328639 | ID=MS.gene037613.t1.exon1;Parent=MS.gene037613.t1 |
| chr4.3 | CDS | 80328639 | 80328713 | 80328639 | ID=cds.MS.gene037613.t1;Parent=MS.gene037613.t1 |
| chr4.3 | exon | 80329118 | 80329522 | 80329118 | ID=MS.gene037613.t1.exon2;Parent=MS.gene037613.t1 |
| chr4.3 | CDS | 80329118 | 80329522 | 80329118 | ID=cds.MS.gene037613.t1;Parent=MS.gene037613.t1 |
| chr4.3 | exon | 80329620 | 80329874 | 80329620 | ID=MS.gene037613.t1.exon3;Parent=MS.gene037613.t1 |
| chr4.3 | CDS | 80329620 | 80329874 | 80329620 | ID=cds.MS.gene037613.t1;Parent=MS.gene037613.t1 |
| chr4.3 | exon | 80330232 | 80330576 | 80330232 | ID=MS.gene037613.t1.exon4;Parent=MS.gene037613.t1 |
| chr4.3 | CDS | 80330232 | 80330576 | 80330232 | ID=cds.MS.gene037613.t1;Parent=MS.gene037613.t1 |
| Gene Sequence |
| Protein sequence |
