AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73290.t1 MTR_4g018820 96.571 350 12 0 1 350 9 358 0.0 706
MS.gene73290.t1 MTR_3g467270 81.492 362 56 1 1 351 8 369 0.0 612
MS.gene73290.t1 MTR_8g076900 73.938 353 89 1 1 350 9 361 0.0 548
MS.gene73290.t1 MTR_8g077040 70.442 362 96 2 1 351 9 370 0.0 536
MS.gene73290.t1 MTR_5g020940 65.193 362 114 3 1 350 19 380 9.35e-179 501
MS.gene73290.t1 MTR_6g056070 69.341 349 104 1 3 351 12 357 5.83e-177 495
MS.gene73290.t1 MTR_8g020690 63.818 351 126 1 1 350 9 359 4.23e-167 470
MS.gene73290.t1 MTR_8g020700 62.108 351 129 2 1 350 9 356 5.39e-159 449
MS.gene73290.t1 MTR_8g076900 76.793 237 55 0 1 237 9 245 5.91e-134 382
MS.gene73290.t1 MTR_8g020700 65.182 247 85 1 1 246 9 255 2.69e-114 332
MS.gene73290.t1 MTR_3g117060 45.355 366 178 4 1 350 9 368 4.72e-110 326
MS.gene73290.t1 MTR_8g077030 54.386 342 72 8 1 339 9 269 2.84e-105 319
MS.gene73290.t1 MTR_1g022455 44.595 370 185 7 1 350 9 378 2.37e-99 299
MS.gene73290.t1 MTR_1g022465 44.715 369 185 6 1 350 9 377 1.77e-98 296
MS.gene73290.t1 MTR_3g467560 42.061 359 194 4 1 349 33 387 2.45e-97 294
MS.gene73290.t1 MTR_7g084620 41.803 366 189 7 1 351 9 365 1.06e-93 284
MS.gene73290.t1 MTR_5g046110 39.216 357 204 3 1 349 69 420 1.56e-93 285
MS.gene73290.t1 MTR_7g084350 39.452 365 201 6 1 351 7 365 3.66e-87 267
MS.gene73290.t1 MTR_7g084330 36.857 350 182 9 17 351 8 333 1.82e-66 213
MS.gene73290.t1 MTR_3g054330 36.735 343 198 9 1 327 18 357 1.30e-55 186
MS.gene73290.t1 MTR_5g093900 34.492 374 214 12 1 348 21 389 2.68e-54 183
MS.gene73290.t1 MTR_3g052700 35.876 354 200 11 1 332 21 369 6.03e-54 182
MS.gene73290.t1 MTR_1g108660 36.728 324 171 10 18 327 9 312 3.37e-52 176
MS.gene73290.t1 MTR_6g015620 36.290 124 67 2 237 350 16 137 1.59e-19 84.0
MS.gene73290.t1 MTR_7g084340 32.031 128 80 2 229 349 2 129 6.88e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73290.t1 AT1G19640 44.591 379 180 6 1 349 9 387 2.33e-97 294
MS.gene73290.t1 AT5G66430 41.944 360 193 5 1 350 1 354 9.53e-95 286
MS.gene73290.t1 AT3G11480 41.761 352 200 3 1 350 31 379 1.44e-94 286
MS.gene73290.t1 AT4G36470 40.771 363 198 5 1 350 12 370 2.65e-92 280
MS.gene73290.t1 AT5G04370 43.099 355 192 5 1 350 41 390 3.72e-92 281
MS.gene73290.t1 AT5G04370 43.099 355 192 5 1 350 60 409 8.91e-92 281
MS.gene73290.t1 AT5G04370 43.099 355 192 5 1 350 46 395 1.26e-91 280
MS.gene73290.t1 AT5G04380 41.389 360 193 5 1 350 38 389 2.68e-91 278
MS.gene73290.t1 AT5G38020 41.689 367 193 6 1 350 6 368 1.13e-87 268
MS.gene73290.t1 AT5G04380 40.833 360 188 6 1 350 34 378 8.21e-87 266
MS.gene73290.t1 AT2G14060 41.598 363 195 6 1 350 14 372 7.90e-86 264
MS.gene73290.t1 AT3G21950 41.257 366 196 5 1 350 6 368 9.59e-86 263
MS.gene73290.t1 AT5G04380 42.271 317 172 3 40 350 7 318 1.02e-85 262
MS.gene73290.t1 AT5G38020 42.813 327 167 5 40 350 7 329 3.01e-82 253
MS.gene73290.t1 AT3G21950 38.191 398 195 6 1 350 6 400 6.50e-80 249
MS.gene73290.t1 AT2G14060 45.778 225 118 2 1 224 14 235 2.21e-63 202
MS.gene73290.t1 AT1G68040 36.919 344 188 10 1 330 13 341 1.63e-59 196
MS.gene73290.t1 AT1G15125 35.608 337 188 10 1 325 1 320 1.27e-55 185
MS.gene73290.t1 AT5G55250 34.897 341 202 10 1 324 21 358 2.25e-53 181
MS.gene73290.t1 AT5G37970 35.676 370 201 13 1 350 10 362 9.42e-52 176
MS.gene73290.t1 AT5G38100 37.853 354 174 15 1 332 10 339 2.35e-51 174
MS.gene73290.t1 AT5G37990 35.230 369 204 11 1 350 10 362 1.39e-50 172
MS.gene73290.t1 AT5G55250 35.238 315 184 10 27 324 9 320 1.48e-50 172
MS.gene73290.t1 AT5G38100 39.803 304 150 12 43 332 32 316 2.09e-50 171
MS.gene73290.t1 AT5G38780 34.097 349 196 10 1 332 10 341 1.15e-49 170
MS.gene73290.t1 AT5G38780 35.314 303 166 8 43 332 7 292 1.45e-48 166
MS.gene73290.t1 AT4G26420 32.665 349 200 12 1 325 13 350 1.90e-46 162
MS.gene73290.t1 AT5G56300 31.124 347 209 10 1 326 24 361 1.05e-45 160
MS.gene73290.t1 AT3G44840 33.433 335 195 9 1 326 7 322 1.48e-41 149
MS.gene73290.t1 AT1G66700 31.157 337 195 11 1 322 9 323 1.00e-39 144
MS.gene73290.t1 AT1G66720 31.044 364 216 11 1 350 9 351 1.76e-39 143
MS.gene73290.t1 AT3G44870 36.491 285 155 9 1 276 7 274 1.99e-37 138
MS.gene73290.t1 AT3G44860 35.294 289 156 9 1 276 7 277 8.79e-37 136
MS.gene73290.t1 AT4G26420 35.714 252 136 9 1 235 13 255 2.30e-35 130
MS.gene73290.t1 AT4G26420 35.338 266 140 10 1 249 1 251 2.93e-35 130
MS.gene73290.t1 AT1G66690 30.746 335 199 10 1 322 9 323 1.47e-34 130
MS.gene73290.t1 AT1G15125 36.032 247 133 9 1 235 1 234 1.64e-34 127
MS.gene73290.t1 AT5G38100 39.300 257 115 13 1 235 10 247 1.92e-33 124
MS.gene73290.t1 AT5G38100 39.300 257 115 13 1 235 10 247 2.02e-33 124
MS.gene73290.t1 AT1G66700 33.466 251 137 9 1 237 9 243 2.03e-29 114

Find 74 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACTTGGGTTGCTCTTT+TGG 0.137193 4.1:+79320903 MS.gene73290:CDS
TGCTACTTCTCTGGTGTTCC+TGG 0.206346 4.1:+79321119 MS.gene73290:CDS
TCTGCAATTGCCAAACTTCT+TGG 0.219837 4.1:-79320885 None:intergenic
ATTGGAATGCTCTTGATAAT+TGG 0.222028 4.1:+79321855 MS.gene73290:CDS
TAGAGGTTTCTGAAGTAAAT+TGG 0.228818 4.1:+79321837 MS.gene73290:CDS
GGCTATGGCACTTAATGATA+TGG 0.252043 4.1:+79321557 MS.gene73290:CDS
TGGAAAGATCCTACCATAAA+AGG 0.266724 4.1:-79321144 None:intergenic
ATGGTTTCCTAGTCATCATT+AGG 0.273813 4.1:-79322045 None:intergenic
CAGTCTTCAATGGCTATCTA+AGG 0.306294 4.1:+79321199 MS.gene73290:CDS
GATGGAGATGGATAATAGTT+AGG 0.317941 4.1:-79321764 None:intergenic
GCAAGGAGTCTGGTTACATT+TGG 0.334076 4.1:+79321526 MS.gene73290:CDS
TTCTTCAACACTTCCATTCA+TGG 0.347205 4.1:-79320287 None:intergenic
GGCTGTGGCTGAACCATTGC+TGG 0.354555 4.1:+79321919 MS.gene73290:CDS
TAATGAAATGGAAACTGAAA+TGG 0.362246 4.1:+79321091 MS.gene73290:CDS
TAACCAGACTCCTTGCTTGA+TGG 0.366400 4.1:-79321519 None:intergenic
TTGGAATGCTCTTGATAATT+GGG 0.367672 4.1:+79321856 MS.gene73290:CDS
CAACACACTTCCAAGAAGTT+TGG 0.375122 4.1:+79320875 MS.gene73290:CDS
CAAGGAGTCTGGTTACATTT+GGG 0.405887 4.1:+79321527 MS.gene73290:CDS
TGGTTTCCTAGTCATCATTA+GGG 0.408825 4.1:-79322044 None:intergenic
ACCACCTTCAACTAGTTCTT+CGG 0.413226 4.1:-79321457 None:intergenic
TCGAGGGGCTTGTGCTCGTC+AGG 0.418348 4.1:-79321371 None:intergenic
AAGCCCCTCGAATGTCTTCA+AGG 0.418495 4.1:+79321383 MS.gene73290:CDS
GAGATCACCAAGAAAGTGTT+TGG 0.420623 4.1:-79320927 None:intergenic
AAGTTTGGCAATTGCAGACT+TGG 0.425420 4.1:+79320890 MS.gene73290:CDS
TGGAAACAACTCCTTACTTC+AGG 0.431177 4.1:+79320318 MS.gene73290:CDS
ACAATGTGGCACAATGCATA+AGG 0.440440 4.1:+79321897 MS.gene73290:CDS
ATGGGCCCATGCTACTTCTC+TGG 0.453799 4.1:+79321110 MS.gene73290:CDS
AATTGGGATCAATTTAATGA+TGG 0.454125 4.1:+79321872 MS.gene73290:CDS
GTTGCAGTATAGACTGGTTA+TGG 0.459641 4.1:-79320856 None:intergenic
TAGCCATTGAAGACTGTAAG+AGG 0.461670 4.1:-79321192 None:intergenic
ACGTCGTTGAAATCATTTCC+CGG 0.465836 4.1:-79321032 None:intergenic
GGTGATCTCTGAAATTATCA+AGG 0.471395 4.1:+79320941 MS.gene73290:CDS
TGGTTACATTTGGGAACTCC+TGG 0.477112 4.1:+79321536 MS.gene73290:CDS
AGTCATCATTAGGGTAAGAT+TGG 0.479471 4.1:-79322035 None:intergenic
ATCTCCATCAGAGGTGAAGT+TGG 0.486718 4.1:+79321778 MS.gene73290:CDS
ACTTCCAACTTCACCTCTGA+TGG 0.493374 4.1:-79321782 None:intergenic
CCATTGCTGGTTAGTCACTT+TGG 0.497066 4.1:+79321932 MS.gene73290:CDS
GATCCATCAAGCAAGGAGTC+TGG 0.498680 4.1:+79321516 MS.gene73290:CDS
ATGGAGATGGATAATAGTTA+GGG 0.500415 4.1:-79321763 None:intergenic
CACACTATATACCTGAAGTA+AGG 0.501345 4.1:-79320329 None:intergenic
TGTGTATAGATTCCTGAGGT+TGG 0.509268 4.1:+79321324 MS.gene73290:intron
ATTCCTCTTACAGTCTTCAA+TGG 0.509521 4.1:+79321189 MS.gene73290:CDS
TGAAACTATTGACTTTCTCC+TGG 0.513511 4.1:-79321736 None:intergenic
AATGAAATGGAAACTGAAAT+GGG 0.514173 4.1:+79321092 MS.gene73290:CDS
CTGGTTAGTCACTTTGGTGA+AGG 0.524926 4.1:+79321938 MS.gene73290:CDS
CAATGTGGCACAATGCATAA+GGG 0.527168 4.1:+79321898 MS.gene73290:CDS
CATTTGGGAACTCCTGGCTA+TGG 0.529514 4.1:+79321542 MS.gene73290:CDS
AGTGATGGAGAATGATCCTT+CGG 0.531370 4.1:-79321810 None:intergenic
TATCATTAAGTGCCATAGCC+AGG 0.531511 4.1:-79321554 None:intergenic
ATCCTACCATAAAAGGATCC+AGG 0.532082 4.1:-79321137 None:intergenic
TCTTCAACACTTCCATTCAT+GGG 0.552017 4.1:-79320286 None:intergenic
AACTTCACCTCTGATGGAGA+TGG 0.559494 4.1:-79321776 None:intergenic
GCTCAGGTACTACCCATGAA+TGG 0.561191 4.1:+79320274 None:intergenic
CGTGCCGAAGAACTAGTTGA+AGG 0.567726 4.1:+79321453 MS.gene73290:CDS
AGTTTGGCAATTGCAGACTT+GGG 0.568987 4.1:+79320891 MS.gene73290:CDS
ATTCTCCATCACTCGACTAG+AGG 0.569910 4.1:+79321820 MS.gene73290:CDS
AGAAACCTCTAGTCGAGTGA+TGG 0.575691 4.1:-79321825 None:intergenic
AGTGTTGAAGAAGCAAGCTA+TGG 0.577994 4.1:+79320298 MS.gene73290:CDS
GGAACACCAGAGAAGTAGCA+TGG 0.591913 4.1:-79321116 None:intergenic
AAGTGTGTTGCAGTATAGAC+TGG 0.601038 4.1:-79320862 None:intergenic
AAACAGTGATCCATCAAGCA+AGG 0.606931 4.1:+79321509 MS.gene73290:CDS
ATAAGCCTTGAAGACATTCG+AGG 0.610648 4.1:-79321388 None:intergenic
CTATTATCCATCTCCATCAG+AGG 0.611590 4.1:+79321769 MS.gene73290:CDS
ATCTTACCCTAATGATGACT+AGG 0.614467 4.1:+79322038 MS.gene73290:CDS
TAAGCCTTGAAGACATTCGA+GGG 0.615259 4.1:-79321387 None:intergenic
CCAAAGTGACTAACCAGCAA+TGG 0.615902 4.1:-79321932 None:intergenic
GAACACCAGAGAAGTAGCAT+GGG 0.633213 4.1:-79321115 None:intergenic
AAGTTGGAAGTTCTCACCGA+AGG 0.633680 4.1:+79321794 MS.gene73290:CDS
GGCACAATGCATAAGGGCTG+TGG 0.641920 4.1:+79321904 MS.gene73290:CDS
TATGCAGGGAATCATTGACC+AGG 0.646781 4.1:+79321718 MS.gene73290:intron
GCCGAAGAACTAGTTGAAGG+TGG 0.672957 4.1:+79321456 MS.gene73290:CDS
AAGCCTTGAAGACATTCGAG+GGG 0.681010 4.1:-79321386 None:intergenic
ATTTAATGATGGATACAATG+TGG 0.700017 4.1:+79321883 MS.gene73290:CDS
TCTATGTGTATAGATTCCTG+AGG 0.714854 4.1:+79321320 MS.gene73290:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTCTTCAAAATTT+TGG - chr4.1:79321680-79321699 None:intergenic 10.0%
!! GTTCATATTAATTTAGAAAA+TGG + chr4.1:79321611-79321630 MS.gene73290:intron 15.0%
!! AGTTCAATAACTTTAAATGA+AGG - chr4.1:79320389-79320408 None:intergenic 20.0%
!! GGTATGATGATAATATATAT+AGG - chr4.1:79320368-79320387 None:intergenic 20.0%
!! GTGTTGAAACATTTATTAAA+TGG - chr4.1:79321275-79321294 None:intergenic 20.0%
!! TTATTGAAGTTGTCTAATAT+GGG + chr4.1:79320545-79320564 MS.gene73290:intron 20.0%
!! TTCAAAAAGACTTTATATTC+AGG - chr4.1:79321005-79321024 None:intergenic 20.0%
!! TTTATTGAAGTTGTCTAATA+TGG + chr4.1:79320544-79320563 MS.gene73290:intron 20.0%
!!! AATCGCTATAAGAAAATTTT+AGG + chr4.1:79321980-79321999 MS.gene73290:CDS 20.0%
!!! ATTACATTTTCTTAGTCTTT+TGG + chr4.1:79321235-79321254 MS.gene73290:intron 20.0%
!!! TAAGTATTTAAAGCATACTA+TGG + chr4.1:79320780-79320799 MS.gene73290:intron 20.0%
! AATGAAATGGAAACTGAAAT+GGG + chr4.1:79321092-79321111 MS.gene73290:CDS 25.0%
! AATTGGGATCAATTTAATGA+TGG + chr4.1:79321872-79321891 MS.gene73290:CDS 25.0%
! AGAAAAACTACGTAATGAAA+TGG + chr4.1:79321079-79321098 MS.gene73290:CDS 25.0%
! ATAGAACACAATAAATACGT+GGG + chr4.1:79321636-79321655 MS.gene73290:intron 25.0%
! TAATGAAATGGAAACTGAAA+TGG + chr4.1:79321091-79321110 MS.gene73290:CDS 25.0%
! TAATTTAGACGTTTATTGAG+AGG + chr4.1:79320671-79320690 MS.gene73290:intron 25.0%
! TACATTAATATGCATATGCA+GGG + chr4.1:79321704-79321723 MS.gene73290:intron 25.0%
! TCTCAATAAACGTCTAAATT+AGG - chr4.1:79320672-79320691 None:intergenic 25.0%
!! ACAAAATGCAAACTTTTATC+TGG - chr4.1:79321167-79321186 None:intergenic 25.0%
!! ATTACGTAGTTTTTCTTTGA+AGG - chr4.1:79321075-79321094 None:intergenic 25.0%
!! CACATGATTCTAACATTTTT+AGG + chr4.1:79321480-79321499 MS.gene73290:CDS 25.0%
!!! ATTTAATGATGGATACAATG+TGG + chr4.1:79321883-79321902 MS.gene73290:CDS 25.0%
ATGGAGATGGATAATAGTTA+GGG - chr4.1:79321766-79321785 None:intergenic 30.0%
CAATAAACGTCTAAATTAGG+TGG - chr4.1:79320669-79320688 None:intergenic 30.0%
CATAGAACACAATAAATACG+TGG + chr4.1:79321635-79321654 MS.gene73290:intron 30.0%
CTACATTAATATGCATATGC+AGG + chr4.1:79321703-79321722 MS.gene73290:intron 30.0%
TAACTTGAGTGTGTCTAATA+TGG - chr4.1:79320698-79320717 None:intergenic 30.0%
! ATTGGAATGCTCTTGATAAT+TGG + chr4.1:79321855-79321874 MS.gene73290:CDS 30.0%
! TTGGAATGCTCTTGATAATT+GGG + chr4.1:79321856-79321875 MS.gene73290:CDS 30.0%
!! ACTTAATGATATGGTTTTGC+AGG + chr4.1:79321566-79321585 MS.gene73290:CDS 30.0%
!! TAGAGGTTTCTGAAGTAAAT+TGG + chr4.1:79321837-79321856 MS.gene73290:CDS 30.0%
!!! TTTTTCTTTGAAGGTGTCAA+GGG - chr4.1:79321066-79321085 None:intergenic 30.0%
AGTCATCATTAGGGTAAGAT+TGG - chr4.1:79322038-79322057 None:intergenic 35.0%
ATCTTACCCTAATGATGACT+AGG + chr4.1:79322038-79322057 MS.gene73290:CDS 35.0%
ATGGTTTCCTAGTCATCATT+AGG - chr4.1:79322048-79322067 None:intergenic 35.0%
ATTCCTCTTACAGTCTTCAA+TGG + chr4.1:79321189-79321208 MS.gene73290:CDS 35.0%
CACACTATATACCTGAAGTA+AGG - chr4.1:79320332-79320351 None:intergenic 35.0%
GAAGTTGTCTAATATGGGTT+CGG + chr4.1:79320550-79320569 MS.gene73290:intron 35.0%
GATGGAGATGGATAATAGTT+AGG - chr4.1:79321767-79321786 None:intergenic 35.0%
TCTATGTGTATAGATTCCTG+AGG + chr4.1:79321320-79321339 MS.gene73290:intron 35.0%
TGGAAAGATCCTACCATAAA+AGG - chr4.1:79321147-79321166 None:intergenic 35.0%
TGGTCTAAATATACAGCGAA+AGG + chr4.1:79320800-79320819 MS.gene73290:intron 35.0%
TGGTTTCCTAGTCATCATTA+GGG - chr4.1:79322047-79322066 None:intergenic 35.0%
! AGTCTTTTTGAACGATCTAC+CGG + chr4.1:79321013-79321032 MS.gene73290:CDS 35.0%
! TTTTGGACCAAACACTTTCT+TGG + chr4.1:79320920-79320939 MS.gene73290:CDS 35.0%
!! GGTGATCTCTGAAATTATCA+AGG + chr4.1:79320941-79320960 MS.gene73290:CDS 35.0%
!! TGAAACTATTGACTTTCTCC+TGG - chr4.1:79321739-79321758 None:intergenic 35.0%
!!! GTTTTTCTTTGAAGGTGTCA+AGG - chr4.1:79321067-79321086 None:intergenic 35.0%
AAACAGTGATCCATCAAGCA+AGG + chr4.1:79321509-79321528 MS.gene73290:CDS 40.0%
AAGTGTGTTGCAGTATAGAC+TGG - chr4.1:79320865-79320884 None:intergenic 40.0%
AAGTTTGGCAATTGCAGACT+TGG + chr4.1:79320890-79320909 MS.gene73290:CDS 40.0%
ACAATGTGGCACAATGCATA+AGG + chr4.1:79321897-79321916 MS.gene73290:CDS 40.0%
ACGTCGTTGAAATCATTTCC+CGG - chr4.1:79321035-79321054 None:intergenic 40.0%
AGTTTGGCAATTGCAGACTT+GGG + chr4.1:79320891-79320910 MS.gene73290:CDS 40.0%
ATAAGCCTTGAAGACATTCG+AGG - chr4.1:79321391-79321410 None:intergenic 40.0%
ATCCTACCATAAAAGGATCC+AGG - chr4.1:79321140-79321159 None:intergenic 40.0%
CAACACACTTCCAAGAAGTT+TGG + chr4.1:79320875-79320894 MS.gene73290:CDS 40.0%
CAAGGAGTCTGGTTACATTT+GGG + chr4.1:79321527-79321546 MS.gene73290:CDS 40.0%
CAATGTGGCACAATGCATAA+GGG + chr4.1:79321898-79321917 MS.gene73290:CDS 40.0%
CAGTCTTCAATGGCTATCTA+AGG + chr4.1:79321199-79321218 MS.gene73290:CDS 40.0%
CTATTATCCATCTCCATCAG+AGG + chr4.1:79321769-79321788 MS.gene73290:CDS 40.0%
GAGGTTGGAGACAAAAACAA+GGG + chr4.1:79321339-79321358 MS.gene73290:CDS 40.0%
GGCTATGGCACTTAATGATA+TGG + chr4.1:79321557-79321576 MS.gene73290:CDS 40.0%
TAAGCCTTGAAGACATTCGA+GGG - chr4.1:79321390-79321409 None:intergenic 40.0%
TAGCCATTGAAGACTGTAAG+AGG - chr4.1:79321195-79321214 None:intergenic 40.0%
TATCATTAAGTGCCATAGCC+AGG - chr4.1:79321557-79321576 None:intergenic 40.0%
TCTGCAATTGCCAAACTTCT+TGG - chr4.1:79320888-79320907 None:intergenic 40.0%
TGAGGTTGGAGACAAAAACA+AGG + chr4.1:79321338-79321357 MS.gene73290:CDS 40.0%
TGGAAACAACTCCTTACTTC+AGG + chr4.1:79320318-79320337 MS.gene73290:CDS 40.0%
TGTGTATAGATTCCTGAGGT+TGG + chr4.1:79321324-79321343 MS.gene73290:intron 40.0%
! ACCACCTTCAACTAGTTCTT+CGG - chr4.1:79321460-79321479 None:intergenic 40.0%
! AGTGATGGAGAATGATCCTT+CGG - chr4.1:79321813-79321832 None:intergenic 40.0%
! AGTGTTGAAGAAGCAAGCTA+TGG + chr4.1:79320298-79320317 MS.gene73290:CDS 40.0%
! GTCTTTTTGAACGATCTACC+GGG + chr4.1:79321014-79321033 MS.gene73290:CDS 40.0%
! GTTGCAGTATAGACTGGTTA+TGG - chr4.1:79320859-79320878 None:intergenic 40.0%
! TTCCTGGATCCTTTTATGGT+AGG + chr4.1:79321135-79321154 MS.gene73290:CDS 40.0%
!! GAGATCACCAAGAAAGTGTT+TGG - chr4.1:79320930-79320949 None:intergenic 40.0%
!!! TTGTTTTTGTCTCCAACCTC+AGG - chr4.1:79321339-79321358 None:intergenic 40.0%
AACTTCACCTCTGATGGAGA+TGG - chr4.1:79321779-79321798 None:intergenic 45.0%
AAGCCTTGAAGACATTCGAG+GGG - chr4.1:79321389-79321408 None:intergenic 45.0%
AAGTTGGAAGTTCTCACCGA+AGG + chr4.1:79321794-79321813 MS.gene73290:CDS 45.0%
ACTTCCAACTTCACCTCTGA+TGG - chr4.1:79321785-79321804 None:intergenic 45.0%
AGAAACCTCTAGTCGAGTGA+TGG - chr4.1:79321828-79321847 None:intergenic 45.0%
ATCTCCATCAGAGGTGAAGT+TGG + chr4.1:79321778-79321797 MS.gene73290:CDS 45.0%
ATTCTCCATCACTCGACTAG+AGG + chr4.1:79321820-79321839 MS.gene73290:CDS 45.0%
CCAAAGTGACTAACCAGCAA+TGG - chr4.1:79321935-79321954 None:intergenic 45.0%
GAACACCAGAGAAGTAGCAT+GGG - chr4.1:79321118-79321137 None:intergenic 45.0%
GCAAGGAGTCTGGTTACATT+TGG + chr4.1:79321526-79321545 MS.gene73290:CDS 45.0%
TAACCAGACTCCTTGCTTGA+TGG - chr4.1:79321522-79321541 None:intergenic 45.0%
TATGCAGGGAATCATTGACC+AGG + chr4.1:79321718-79321737 MS.gene73290:intron 45.0%
TGGTTACATTTGGGAACTCC+TGG + chr4.1:79321536-79321555 MS.gene73290:CDS 45.0%
! CCATTGCTGGTTAGTCACTT+TGG + chr4.1:79321932-79321951 MS.gene73290:CDS 45.0%
! CTGGTTAGTCACTTTGGTGA+AGG + chr4.1:79321938-79321957 MS.gene73290:CDS 45.0%
! GGTGTTCCTGGATCCTTTTA+TGG + chr4.1:79321131-79321150 MS.gene73290:CDS 45.0%
!!! AATAGAAAATTTTATATTAT+TGG - chr4.1:79320577-79320596 None:intergenic 5.0%
!!! TATTACATATTTTTTTTAAA+TGG + chr4.1:79320636-79320655 MS.gene73290:intron 5.0%
AAGCCCCTCGAATGTCTTCA+AGG + chr4.1:79321383-79321402 MS.gene73290:CDS 50.0%
CATTTGGGAACTCCTGGCTA+TGG + chr4.1:79321542-79321561 MS.gene73290:CDS 50.0%
CGTGCCGAAGAACTAGTTGA+AGG + chr4.1:79321453-79321472 MS.gene73290:CDS 50.0%
GATCCATCAAGCAAGGAGTC+TGG + chr4.1:79321516-79321535 MS.gene73290:CDS 50.0%
GCCGAAGAACTAGTTGAAGG+TGG + chr4.1:79321456-79321475 MS.gene73290:CDS 50.0%
GGAACACCAGAGAAGTAGCA+TGG - chr4.1:79321119-79321138 None:intergenic 50.0%
! TGCTACTTCTCTGGTGTTCC+TGG + chr4.1:79321119-79321138 MS.gene73290:CDS 50.0%
!! GCAGACTTGGGTTGCTCTTT+TGG + chr4.1:79320903-79320922 MS.gene73290:CDS 50.0%
GGCACAATGCATAAGGGCTG+TGG + chr4.1:79321904-79321923 MS.gene73290:CDS 55.0%
! ATGGGCCCATGCTACTTCTC+TGG + chr4.1:79321110-79321129 MS.gene73290:CDS 55.0%
GGCTGTGGCTGAACCATTGC+TGG + chr4.1:79321919-79321938 MS.gene73290:CDS 60.0%
TCGAGGGGCTTGTGCTCGTC+AGG - chr4.1:79321374-79321393 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 79320289 79322069 79320289 ID=MS.gene73290
chr4.1 mRNA 79320289 79322069 79320289 ID=MS.gene73290.t1;Parent=MS.gene73290
chr4.1 exon 79320289 79320339 79320289 ID=MS.gene73290.t1.exon1;Parent=MS.gene73290.t1
chr4.1 CDS 79320289 79320339 79320289 ID=cds.MS.gene73290.t1;Parent=MS.gene73290.t1
chr4.1 exon 79320816 79321220 79320816 ID=MS.gene73290.t1.exon2;Parent=MS.gene73290.t1
chr4.1 CDS 79320816 79321220 79320816 ID=cds.MS.gene73290.t1;Parent=MS.gene73290.t1
chr4.1 exon 79321333 79321587 79321333 ID=MS.gene73290.t1.exon3;Parent=MS.gene73290.t1
chr4.1 CDS 79321333 79321587 79321333 ID=cds.MS.gene73290.t1;Parent=MS.gene73290.t1
chr4.1 exon 79321725 79322069 79321725 ID=MS.gene73290.t1.exon4;Parent=MS.gene73290.t1
chr4.1 CDS 79321725 79322069 79321725 ID=cds.MS.gene73290.t1;Parent=MS.gene73290.t1
Gene Sequence

>MS.gene73290

ATGAATGGAAGTGTTGAAGAAGCAAGCTATGGAAACAACTCCTTACTTCAGGTATATAGTGTGTCTGTTTATCTATCCTATATATATTATCATCATACCTTCATTTAAAGTTATTGAACTAAAGAAGTATTTAGATGATGTTAATTTTTAAATTTATGAAAAATGTGAATTTAATCTACTTTTTTTTTTTTTGTTTTGAATGAATGAATTTAATCTACTTATCAATAAGAACTTTTTGAGATGAAATTCTATATCTTTATTGAAGTTGTCTAATATGGGTTCGGTCCAATAATATAAAATTTTCTATTTTAAATAAAGTTAATATTATTTTTATTTTCTATTTCTTTTATTACATATTTTTTTTAAATGGTTAATGTCCACCTAATTTAGACGTTTATTGAGAGGTCCATATTAGACACACTCAAGTTAATTATACAAAAATATTAATAATATTCTCTTCATATTTAAATGTGAAAAATAGCTTGAGACAATAAGTATTTAAAGCATACTATGGTCTAAATATACAGCGAAAGGTGATTTCTTTGACAAAAACTTTGAGAGACGAAGCCATAACCAGTCTATACTGCAACACACTTCCAAGAAGTTTGGCAATTGCAGACTTGGGTTGCTCTTTTGGACCAAACACTTTCTTGGTGATCTCTGAAATTATCAAGGTTGTTGAAAAGCTTTGTCAAGAACTTAATCATAAATCTCCTGAATATAAAGTCTTTTTGAACGATCTACCGGGAAATGATTTCAACGACGTATTTATGTCCCTTGACACCTTCAAAGAAAAACTACGTAATGAAATGGAAACTGAAATGGGCCCATGCTACTTCTCTGGTGTTCCTGGATCCTTTTATGGTAGGATCTTTCCAGATAAAAGTTTGCATTTTGTGCATTCCTCTTACAGTCTTCAATGGCTATCTAAGGTTTGTTTATAACAATTACATTTTCTTAGTCTTTTGGTAATCTATAAACATCCATTTAATAAATGTTTCAACACAATATAAAATTTTCTCTATATTTAATCTATGTGTATAGATTCCTGAGGTTGGAGACAAAAACAAGGGAAACATTTACCTGACGAGCACAAGCCCCTCGAATGTCTTCAAGGCTTATTACAAGCAATTTCAAACAGATTTCTCTTTTTTTCTCAAGTGTCGTGCCGAAGAACTAGTTGAAGGTGGTCACATGATTCTAACATTTTTAGGACGAAAAAACAGTGATCCATCAAGCAAGGAGTCTGGTTACATTTGGGAACTCCTGGCTATGGCACTTAATGATATGGTTTTGCAGGTAAACTACGATAATTTTTTCTTGTTCATATTAATTTAGAAAATGGTCATAGAACACAATAAATACGTGGGTGAATATGAGAAAAAACTCCAAAATTTTGAAGAAAAAAAATTAACTACATTAATATGCATATGCAGGGAATCATTGACCAGGAGAAAGTCAATAGTTTCAACATCCCTAACTATTATCCATCTCCATCAGAGGTGAAGTTGGAAGTTCTCACCGAAGGATCATTCTCCATCACTCGACTAGAGGTTTCTGAAGTAAATTGGAATGCTCTTGATAATTGGGATCAATTTAATGATGGATACAATGTGGCACAATGCATAAGGGCTGTGGCTGAACCATTGCTGGTTAGTCACTTTGGTGAAGGTGTCATTAAAGAGATTTTTAATCGCTATAAGAAAATTTTAGGTGATCGCATGTCGAAAGAGAAGACTAAGTTCACCAATCTTACCCTAATGATGACTAGGAAACCATGA
Protein sequence

>MS.gene73290.t1

MNGSVEEASYGNNSLLQRKVISLTKTLRDEAITSLYCNTLPRSLAIADLGCSFGPNTFLVISEIIKVVEKLCQELNHKSPEYKVFLNDLPGNDFNDVFMSLDTFKEKLRNEMETEMGPCYFSGVPGSFYGRIFPDKSLHFVHSSYSLQWLSKIPEVGDKNKGNIYLTSTSPSNVFKAYYKQFQTDFSFFLKCRAEELVEGGHMILTFLGRKNSDPSSKESGYIWELLAMALNDMVLQGIIDQEKVNSFNIPNYYPSPSEVKLEVLTEGSFSITRLEVSEVNWNALDNWDQFNDGYNVAQCIRAVAEPLLVSHFGEGVIKEIFNRYKKILGDRMSKEKTKFTNLTLMMTRKP