Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76430.t1 | XP_003629413.1 | 91.2 | 362 | 32 | 0 | 1 | 362 | 9 | 370 | 1.30E-187 | 665.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76430.t1 | Q9SPV4 | 58.4 | 363 | 133 | 5 | 1 | 360 | 9 | 356 | 5.4e-118 | 425.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76430.t1 | G7LDX4 | 91.2 | 362 | 32 | 0 | 1 | 362 | 9 | 370 | 9.3e-188 | 665.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053552 | MS.gene76430 | 0.807116 | 5.92E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene76430 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene059303 | MS.gene76430 | 0.811534 | 6.67E-51 | -1.69E-46 |
| MS.gene059512 | MS.gene76430 | 0.816355 | 5.77E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76430.t1 | MTR_8g077040 | 95.304 | 362 | 17 | 0 | 1 | 362 | 9 | 370 | 0.0 | 717 |
| MS.gene76430.t1 | MTR_5g020940 | 71.191 | 361 | 103 | 1 | 1 | 360 | 19 | 379 | 0.0 | 556 |
| MS.gene76430.t1 | MTR_3g467270 | 71.271 | 362 | 104 | 0 | 1 | 362 | 8 | 369 | 0.0 | 551 |
| MS.gene76430.t1 | MTR_4g018820 | 71.389 | 360 | 92 | 2 | 1 | 360 | 9 | 357 | 0.0 | 531 |
| MS.gene76430.t1 | MTR_8g076900 | 68.056 | 360 | 107 | 1 | 1 | 360 | 9 | 360 | 0.0 | 513 |
| MS.gene76430.t1 | MTR_6g056070 | 63.636 | 363 | 117 | 3 | 1 | 362 | 9 | 357 | 3.33e-164 | 463 |
| MS.gene76430.t1 | MTR_8g020690 | 60.942 | 361 | 129 | 2 | 1 | 360 | 9 | 358 | 2.54e-158 | 448 |
| MS.gene76430.t1 | MTR_8g020700 | 59.557 | 361 | 131 | 2 | 1 | 360 | 9 | 355 | 4.49e-156 | 442 |
| MS.gene76430.t1 | MTR_8g076900 | 72.574 | 237 | 65 | 0 | 1 | 237 | 9 | 245 | 7.08e-125 | 360 |
| MS.gene76430.t1 | MTR_8g020700 | 64.372 | 247 | 87 | 1 | 1 | 246 | 9 | 255 | 2.28e-113 | 330 |
| MS.gene76430.t1 | MTR_3g117060 | 43.514 | 370 | 188 | 4 | 1 | 360 | 9 | 367 | 1.51e-108 | 322 |
| MS.gene76430.t1 | MTR_1g022465 | 44.681 | 376 | 184 | 7 | 1 | 360 | 9 | 376 | 1.30e-103 | 310 |
| MS.gene76430.t1 | MTR_1g022455 | 44.681 | 376 | 185 | 6 | 1 | 360 | 9 | 377 | 7.22e-103 | 308 |
| MS.gene76430.t1 | MTR_3g467560 | 43.716 | 366 | 189 | 5 | 1 | 360 | 33 | 387 | 2.69e-102 | 307 |
| MS.gene76430.t1 | MTR_5g046110 | 39.617 | 366 | 201 | 3 | 1 | 360 | 69 | 420 | 7.29e-96 | 291 |
| MS.gene76430.t1 | MTR_7g084620 | 41.398 | 372 | 193 | 8 | 1 | 362 | 9 | 365 | 9.77e-95 | 287 |
| MS.gene76430.t1 | MTR_8g077030 | 47.443 | 352 | 92 | 8 | 1 | 350 | 9 | 269 | 6.68e-93 | 287 |
| MS.gene76430.t1 | MTR_7g084350 | 37.297 | 370 | 213 | 5 | 1 | 362 | 7 | 365 | 2.01e-83 | 258 |
| MS.gene76430.t1 | MTR_7g084330 | 35.311 | 354 | 193 | 8 | 17 | 362 | 8 | 333 | 5.87e-65 | 209 |
| MS.gene76430.t1 | MTR_3g054330 | 36.134 | 357 | 192 | 12 | 1 | 338 | 18 | 357 | 7.92e-53 | 179 |
| MS.gene76430.t1 | MTR_1g108660 | 32.778 | 360 | 188 | 12 | 21 | 360 | 12 | 337 | 4.62e-52 | 176 |
| MS.gene76430.t1 | MTR_5g093900 | 33.420 | 383 | 217 | 11 | 1 | 359 | 21 | 389 | 5.69e-51 | 175 |
| MS.gene76430.t1 | MTR_3g052700 | 33.702 | 362 | 208 | 9 | 1 | 343 | 21 | 369 | 2.11e-49 | 171 |
| MS.gene76430.t1 | MTR_6g015620 | 32.000 | 125 | 74 | 2 | 240 | 360 | 19 | 136 | 1.01e-15 | 73.6 |
| MS.gene76430.t1 | MTR_7g084340 | 30.597 | 134 | 85 | 2 | 229 | 360 | 2 | 129 | 8.95e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76430.t1 | AT3G11480 | 42.077 | 366 | 188 | 6 | 1 | 360 | 31 | 378 | 1.10e-97 | 295 |
| MS.gene76430.t1 | AT1G19640 | 44.357 | 381 | 189 | 7 | 1 | 360 | 9 | 387 | 1.88e-95 | 290 |
| MS.gene76430.t1 | AT5G66430 | 40.884 | 362 | 203 | 5 | 1 | 360 | 1 | 353 | 2.22e-95 | 288 |
| MS.gene76430.t1 | AT4G36470 | 41.867 | 375 | 188 | 7 | 1 | 361 | 12 | 370 | 7.33e-95 | 287 |
| MS.gene76430.t1 | AT5G04370 | 42.466 | 365 | 189 | 6 | 1 | 360 | 41 | 389 | 1.35e-93 | 285 |
| MS.gene76430.t1 | AT5G04370 | 42.466 | 365 | 189 | 6 | 1 | 360 | 60 | 408 | 3.07e-93 | 285 |
| MS.gene76430.t1 | AT5G04370 | 42.466 | 365 | 189 | 6 | 1 | 360 | 46 | 394 | 4.21e-93 | 284 |
| MS.gene76430.t1 | AT5G38020 | 41.848 | 368 | 200 | 6 | 1 | 360 | 6 | 367 | 3.08e-90 | 275 |
| MS.gene76430.t1 | AT3G21950 | 41.005 | 378 | 189 | 7 | 1 | 360 | 6 | 367 | 3.44e-89 | 273 |
| MS.gene76430.t1 | AT5G04380 | 40.000 | 365 | 200 | 6 | 1 | 360 | 38 | 388 | 1.08e-88 | 272 |
| MS.gene76430.t1 | AT5G04380 | 39.452 | 365 | 195 | 7 | 1 | 360 | 34 | 377 | 9.77e-85 | 262 |
| MS.gene76430.t1 | AT3G21950 | 38.366 | 404 | 195 | 9 | 1 | 360 | 6 | 399 | 2.99e-83 | 259 |
| MS.gene76430.t1 | AT5G04380 | 40.062 | 322 | 181 | 4 | 40 | 360 | 7 | 317 | 2.40e-82 | 253 |
| MS.gene76430.t1 | AT5G38020 | 41.818 | 330 | 179 | 5 | 38 | 360 | 5 | 328 | 3.60e-82 | 253 |
| MS.gene76430.t1 | AT2G14060 | 36.757 | 370 | 212 | 5 | 1 | 360 | 14 | 371 | 4.58e-82 | 254 |
| MS.gene76430.t1 | AT1G68040 | 35.165 | 364 | 197 | 8 | 1 | 351 | 13 | 350 | 1.55e-64 | 209 |
| MS.gene76430.t1 | AT2G14060 | 42.667 | 225 | 125 | 2 | 1 | 224 | 14 | 235 | 2.39e-63 | 202 |
| MS.gene76430.t1 | AT5G55250 | 34.626 | 361 | 191 | 12 | 1 | 337 | 21 | 360 | 4.82e-55 | 185 |
| MS.gene76430.t1 | AT1G15125 | 31.467 | 375 | 214 | 11 | 1 | 360 | 1 | 347 | 1.95e-50 | 172 |
| MS.gene76430.t1 | AT5G55250 | 33.742 | 326 | 175 | 9 | 33 | 337 | 17 | 322 | 1.59e-49 | 170 |
| MS.gene76430.t1 | AT5G38100 | 33.989 | 356 | 190 | 9 | 1 | 340 | 10 | 336 | 3.07e-49 | 169 |
| MS.gene76430.t1 | AT5G37990 | 33.943 | 383 | 199 | 14 | 1 | 360 | 10 | 361 | 6.15e-49 | 169 |
| MS.gene76430.t1 | AT5G38780 | 32.682 | 358 | 194 | 10 | 1 | 340 | 10 | 338 | 1.04e-47 | 165 |
| MS.gene76430.t1 | AT5G38100 | 34.891 | 321 | 167 | 8 | 33 | 340 | 22 | 313 | 6.32e-47 | 162 |
| MS.gene76430.t1 | AT5G37970 | 31.759 | 381 | 210 | 10 | 1 | 360 | 10 | 361 | 6.79e-47 | 163 |
| MS.gene76430.t1 | AT5G38780 | 34.185 | 313 | 163 | 9 | 42 | 340 | 6 | 289 | 1.28e-46 | 161 |
| MS.gene76430.t1 | AT4G26420 | 34.734 | 357 | 193 | 13 | 1 | 336 | 13 | 350 | 2.10e-46 | 162 |
| MS.gene76430.t1 | AT5G56300 | 30.986 | 355 | 210 | 10 | 1 | 337 | 24 | 361 | 1.99e-45 | 160 |
| MS.gene76430.t1 | AT3G44840 | 32.676 | 355 | 192 | 10 | 1 | 340 | 7 | 329 | 4.25e-44 | 155 |
| MS.gene76430.t1 | AT3G44860 | 36.786 | 280 | 158 | 6 | 1 | 273 | 7 | 274 | 1.85e-40 | 146 |
| MS.gene76430.t1 | AT3G44870 | 36.429 | 280 | 156 | 7 | 1 | 273 | 7 | 271 | 1.01e-39 | 145 |
| MS.gene76430.t1 | AT1G66720 | 32.667 | 300 | 173 | 10 | 1 | 286 | 9 | 293 | 2.75e-38 | 140 |
| MS.gene76430.t1 | AT4G26420 | 38.667 | 225 | 114 | 8 | 1 | 212 | 13 | 226 | 2.05e-37 | 135 |
| MS.gene76430.t1 | AT1G66700 | 32.082 | 293 | 157 | 7 | 1 | 273 | 9 | 279 | 2.40e-37 | 138 |
| MS.gene76430.t1 | AT4G26420 | 38.667 | 225 | 114 | 8 | 1 | 212 | 1 | 214 | 6.03e-37 | 134 |
| MS.gene76430.t1 | AT5G38100 | 38.991 | 218 | 109 | 6 | 1 | 205 | 10 | 216 | 3.06e-35 | 129 |
| MS.gene76430.t1 | AT5G38100 | 38.991 | 218 | 109 | 6 | 1 | 205 | 10 | 216 | 3.09e-35 | 129 |
| MS.gene76430.t1 | AT1G15125 | 35.160 | 219 | 119 | 6 | 1 | 209 | 1 | 206 | 9.89e-34 | 125 |
| MS.gene76430.t1 | AT1G66690 | 32.302 | 291 | 159 | 7 | 1 | 273 | 9 | 279 | 3.63e-32 | 124 |
| MS.gene76430.t1 | AT1G66700 | 31.907 | 257 | 133 | 7 | 1 | 237 | 9 | 243 | 1.11e-29 | 115 |
Find 72 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTC+TGG | 0.124180 | 8.1:+30727248 | MS.gene76430:CDS |
| TCTGCAATTCCTAAGCTATT+TGG | 0.193298 | 8.1:-30727230 | None:intergenic |
| CAGCCTTATGTGGCTATCTA+AGG | 0.259712 | 8.1:+30727544 | MS.gene76430:CDS |
| GGAGTTCCTGGTTCTTTCTA+TGG | 0.263034 | 8.1:+30727476 | MS.gene76430:CDS |
| GTTCAAGAAAACCTTGTATT+CGG | 0.272656 | 8.1:-30727348 | None:intergenic |
| GCAAGGAGTGTTGCTACATT+TGG | 0.284975 | 8.1:+30728143 | MS.gene76430:CDS |
| TTGCTACATTTGGGAACTTA+TGG | 0.286140 | 8.1:+30728153 | MS.gene76430:CDS |
| GATTATGGCTTCTTCTCTAA+TGG | 0.308035 | 8.1:-30727186 | None:intergenic |
| CTGCAATTCCTAAGCTATTT+GGG | 0.311964 | 8.1:-30727229 | None:intergenic |
| TGCTATATATCTGGAGTTCC+TGG | 0.312996 | 8.1:+30727464 | MS.gene76430:CDS |
| TCTTAATGATATGGTCTTGC+AGG | 0.323770 | 8.1:+30728183 | MS.gene76430:CDS |
| GGAGAATGTGAACAACAATA+AGG | 0.339279 | 8.1:+30727955 | MS.gene76430:CDS |
| GGCTATAGCTCTTAATGATA+TGG | 0.347430 | 8.1:+30728174 | MS.gene76430:CDS |
| TTCTGGACCAAACACTTTGT+TGG | 0.351191 | 8.1:+30727265 | MS.gene76430:CDS |
| ACAAAATGCAAACTTTGATT+AGG | 0.356644 | 8.1:-30727509 | None:intergenic |
| ATGGATCAGTGCTATATATC+TGG | 0.358943 | 8.1:+30727455 | MS.gene76430:CDS |
| GTGTCCATCGGAAGTGAAAT+TGG | 0.373571 | 8.1:+30728686 | MS.gene76430:CDS |
| CAAGGAGTGTTGCTACATTT+GGG | 0.384196 | 8.1:+30728144 | MS.gene76430:CDS |
| TTCAAGAAAACCTTGTATTC+GGG | 0.384731 | 8.1:-30727347 | None:intergenic |
| GGTGGTATCAGAATTTATAA+AGG | 0.386617 | 8.1:+30727286 | MS.gene76430:CDS |
| ACTACAGTAGAGACTGATTA+TGG | 0.390022 | 8.1:-30727201 | None:intergenic |
| ATCATTTACCATCGATCGAT+TGG | 0.399987 | 8.1:+30728725 | MS.gene76430:CDS |
| TGCAAACAACTCCTTAGTTC+AGG | 0.408183 | 8.1:+30726885 | MS.gene76430:CDS |
| TTCCTGGTTCTTTCTATGGC+AGG | 0.412204 | 8.1:+30727480 | MS.gene76430:CDS |
| ATCAGAATTTATAAAGGTTG+TGG | 0.419598 | 8.1:+30727292 | MS.gene76430:CDS |
| TCATTTACCATCGATCGATT+GGG | 0.423277 | 8.1:+30728726 | MS.gene76430:CDS |
| TTATTGTTGTTCACATTCTC+CGG | 0.423470 | 8.1:-30727953 | None:intergenic |
| AGGATTTCTAGTCAATAATA+CGG | 0.440066 | 8.1:-30728985 | None:intergenic |
| GATACCACCAACAAAGTGTT+TGG | 0.447192 | 8.1:-30727272 | None:intergenic |
| CGGTGAAACAGAAACTGAAA+TGG | 0.453352 | 8.1:+30727436 | MS.gene76430:CDS |
| CCTTTGCTAATTAGCCACTT+TGG | 0.456393 | 8.1:+30728873 | MS.gene76430:CDS |
| TATGCATTAAGTACATTTGA+GGG | 0.463714 | 8.1:-30728004 | None:intergenic |
| GAGAATGTGAACAACAATAA+GGG | 0.486332 | 8.1:+30727956 | MS.gene76430:CDS |
| ATTGGAATGCTCTCGATCAA+TGG | 0.490851 | 8.1:+30728763 | MS.gene76430:CDS |
| TAGCTTAGGAATTGCAGACT+TGG | 0.496344 | 8.1:+30727235 | MS.gene76430:CDS |
| GTATGCATTAAGTACATTTG+AGG | 0.501880 | 8.1:-30728005 | None:intergenic |
| TGGACCAAACACTTTGTTGG+TGG | 0.504941 | 8.1:+30727268 | MS.gene76430:CDS |
| AGCTTAGGAATTGCAGACTT+GGG | 0.505553 | 8.1:+30727236 | MS.gene76430:CDS |
| TAGCCACATAAGGCTGTAAG+AGG | 0.511113 | 8.1:-30727537 | None:intergenic |
| TCGTGAATCTCCCGAATACA+AGG | 0.518497 | 8.1:+30727337 | MS.gene76430:CDS |
| ATTCCTCTTACAGCCTTATG+TGG | 0.518669 | 8.1:+30727534 | MS.gene76430:CDS |
| ATCAAGAAATCTTAGTTGAT+CGG | 0.522974 | 8.1:+30728928 | MS.gene76430:CDS |
| ATGGACACGGAGTGTATTGA+GGG | 0.523168 | 8.1:-30728671 | None:intergenic |
| CATTTACCATCGATCGATTG+GGG | 0.529876 | 8.1:+30728727 | MS.gene76430:CDS |
| CGTGCAGAGGAAGTAGTTGA+AGG | 0.533351 | 8.1:+30728070 | MS.gene76430:CDS |
| AAACCTTAGATAGCCACATA+AGG | 0.534886 | 8.1:-30727547 | None:intergenic |
| AGTACATACCCAAATAGCTT+AGG | 0.536677 | 8.1:+30727221 | MS.gene76430:CDS |
| ACTTCCAATTTCACTTCCGA+TGG | 0.537214 | 8.1:-30728690 | None:intergenic |
| TCACAAGTACTGCACATGAA+TGG | 0.538311 | 8.1:+30726841 | None:intergenic |
| GATGGACACGGAGTGTATTG+AGG | 0.546758 | 8.1:-30728672 | None:intergenic |
| ATTCATGTATACCTGAACTA+AGG | 0.548252 | 8.1:-30726896 | None:intergenic |
| CAATAAGGGAAACATTTACA+TGG | 0.550411 | 8.1:+30727970 | MS.gene76430:CDS |
| AAATTGGAAGTTCTCAAAGA+AGG | 0.571795 | 8.1:+30728702 | MS.gene76430:CDS |
| ACATAAGGCTGTAAGAGGAA+TGG | 0.572052 | 8.1:-30727532 | None:intergenic |
| CTGCACATGAATGGAGGTGT+TGG | 0.572205 | 8.1:+30726850 | None:intergenic |
| ATGTTATTGAAGTCGTTACC+CGG | 0.575424 | 8.1:-30727377 | None:intergenic |
| GTGCAGAGGAAGTAGTTGAA+GGG | 0.581334 | 8.1:+30728071 | MS.gene76430:CDS |
| ATGTCTGAATCACTCGGCGA+TGG | 0.582272 | 8.1:+30728810 | MS.gene76430:CDS |
| AATTAGCAAAGGTTCAGAAA+CGG | 0.583320 | 8.1:-30728862 | None:intergenic |
| AATTTCACTTCCGATGGACA+CGG | 0.587997 | 8.1:-30728684 | None:intergenic |
| TCAATACACTCCGTGTCCAT+CGG | 0.588900 | 8.1:+30728674 | MS.gene76430:CDS |
| CCAAAGTGGCTAATTAGCAA+AGG | 0.591173 | 8.1:-30728873 | None:intergenic |
| CTTAGTTGATCGGATGTCCA+AGG | 0.603686 | 8.1:+30728938 | MS.gene76430:CDS |
| ATCCTGCCATAGAAAGAACC+AGG | 0.607110 | 8.1:-30727482 | None:intergenic |
| TGCAGAGGAAGTAGTTGAAG+GGG | 0.612981 | 8.1:+30728072 | MS.gene76430:CDS |
| CAATGATAGACTCTCCAAAG+TGG | 0.620746 | 8.1:-30728887 | None:intergenic |
| TCTCAAATGTCTGAATCACT+CGG | 0.620788 | 8.1:+30728804 | MS.gene76430:CDS |
| AAGTGACAAGATGTATAGCA+AGG | 0.623819 | 8.1:+30728126 | MS.gene76430:CDS |
| ATGCATTAAGTACATTTGAG+GGG | 0.624171 | 8.1:-30728003 | None:intergenic |
| ATTTACCATCGATCGATTGG+GGG | 0.660045 | 8.1:+30728728 | MS.gene76430:CDS |
| CAAGTACTGCACATGAATGG+AGG | 0.661451 | 8.1:+30726844 | None:intergenic |
| GCAGAGGAAGTAGTTGAAGG+GGG | 0.713278 | 8.1:+30728073 | MS.gene76430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCATATAATATTTTTTTTTA+AGG | + | chr8.1:30727086-30727105 | MS.gene76430:intron | 10.0% |
| !! | ATTATATATGAACACATAAT+AGG | - | chr8.1:30726969-30726988 | None:intergenic | 15.0% |
| !! | GAAATTACATATTAATATCT+TGG | - | chr8.1:30728596-30728615 | None:intergenic | 15.0% |
| !! | AATGCTATATATAACAGAAT+CGG | - | chr8.1:30726997-30727016 | None:intergenic | 20.0% |
| !! | GTAAATGTATATGTTGTTAT+TGG | + | chr8.1:30728283-30728302 | MS.gene76430:intron | 20.0% |
| !! | TAAAATATGCACTATCTTTA+GGG | + | chr8.1:30728460-30728479 | MS.gene76430:intron | 20.0% |
| !! | TTAAAATATGCACTATCTTT+AGG | + | chr8.1:30728459-30728478 | MS.gene76430:intron | 20.0% |
| !! | TTAATTATATTTAGGGACAA+AGG | + | chr8.1:30728520-30728539 | MS.gene76430:intron | 20.0% |
| !!! | GTTTTTGTAATTGATGTAAT+TGG | + | chr8.1:30727126-30727145 | MS.gene76430:intron | 20.0% |
| !!! | TATGTAATTTCTTTTCTATG+TGG | + | chr8.1:30728605-30728624 | MS.gene76430:intron | 20.0% |
| ! | ACAAAATGCAAACTTTGATT+AGG | - | chr8.1:30727512-30727531 | None:intergenic | 25.0% |
| ! | ACCACTAACACATTATATTT+AGG | - | chr8.1:30728222-30728241 | None:intergenic | 25.0% |
| ! | ATAAGATGAAAAATCAACTG+AGG | - | chr8.1:30727775-30727794 | None:intergenic | 25.0% |
| ! | ATCAAGAAATCTTAGTTGAT+CGG | + | chr8.1:30728928-30728947 | MS.gene76430:CDS | 25.0% |
| ! | ATCAGAATTTATAAAGGTTG+TGG | + | chr8.1:30727292-30727311 | MS.gene76430:CDS | 25.0% |
| ! | ATGCTATATATAACAGAATC+GGG | - | chr8.1:30726996-30727015 | None:intergenic | 25.0% |
| ! | TAAGATGAAAAATCAACTGA+GGG | - | chr8.1:30727774-30727793 | None:intergenic | 25.0% |
| ! | TATGCATTAAGTACATTTGA+GGG | - | chr8.1:30728007-30728026 | None:intergenic | 25.0% |
| ! | TCCTAAATATAATGTGTTAG+TGG | + | chr8.1:30728218-30728237 | MS.gene76430:intron | 25.0% |
| !! | ATTTCTTTTCTATGTGGATT+AGG | + | chr8.1:30728611-30728630 | MS.gene76430:intron | 25.0% |
| !! | CTTTATTATTTTCAGCTAGA+AGG | - | chr8.1:30727056-30727075 | None:intergenic | 25.0% |
| !!! | AGGATTTCTAGTCAATAATA+CGG | - | chr8.1:30728988-30729007 | None:intergenic | 25.0% |
| !!! | GAGAAAAATCTCTTTGAAAT+TGG | - | chr8.1:30728036-30728055 | None:intergenic | 25.0% |
| !!! | TATTTTTGTGTCTTAGTCAA+TGG | + | chr8.1:30727599-30727618 | MS.gene76430:intron | 25.0% |
| !!! | TTTCTTTTCTATGTGGATTA+GGG | + | chr8.1:30728612-30728631 | MS.gene76430:intron | 25.0% |
| AAATTGGAAGTTCTCAAAGA+AGG | + | chr8.1:30728702-30728721 | MS.gene76430:CDS | 30.0% | |
| AATTAGCAAAGGTTCAGAAA+CGG | - | chr8.1:30728865-30728884 | None:intergenic | 30.0% | |
| ATGCATTAAGTACATTTGAG+GGG | - | chr8.1:30728006-30728025 | None:intergenic | 30.0% | |
| ATTCATGTATACCTGAACTA+AGG | - | chr8.1:30726899-30726918 | None:intergenic | 30.0% | |
| CAATAAGGGAAACATTTACA+TGG | + | chr8.1:30727970-30727989 | MS.gene76430:CDS | 30.0% | |
| GAGAATGTGAACAACAATAA+GGG | + | chr8.1:30727956-30727975 | MS.gene76430:CDS | 30.0% | |
| GGTGGTATCAGAATTTATAA+AGG | + | chr8.1:30727286-30727305 | MS.gene76430:CDS | 30.0% | |
| GTATGCATTAAGTACATTTG+AGG | - | chr8.1:30728008-30728027 | None:intergenic | 30.0% | |
| GTTCAAGAAAACCTTGTATT+CGG | - | chr8.1:30727351-30727370 | None:intergenic | 30.0% | |
| TTCAAGAAAACCTTGTATTC+GGG | - | chr8.1:30727350-30727369 | None:intergenic | 30.0% | |
| ! | ATCAAGCTTCTCTTCTTTTA+TGG | - | chr8.1:30728640-30728659 | None:intergenic | 30.0% |
| ! | CGCATGATTCTAACATTTTT+AGG | + | chr8.1:30728097-30728116 | MS.gene76430:CDS | 30.0% |
| ! | TTATTGTTGTTCACATTCTC+CGG | - | chr8.1:30727956-30727975 | None:intergenic | 30.0% |
| !! | TTGTTGGTTGGTGATTATTT+AGG | + | chr8.1:30727928-30727947 | MS.gene76430:intron | 30.0% |
| AAACCTTAGATAGCCACATA+AGG | - | chr8.1:30727550-30727569 | None:intergenic | 35.0% | |
| AAGTGACAAGATGTATAGCA+AGG | + | chr8.1:30728126-30728145 | MS.gene76430:CDS | 35.0% | |
| AATCCTTAACATGTGCCATA+GGG | + | chr8.1:30727741-30727760 | MS.gene76430:intron | 35.0% | |
| ACTACAGTAGAGACTGATTA+TGG | - | chr8.1:30727204-30727223 | None:intergenic | 35.0% | |
| AGTACATACCCAAATAGCTT+AGG | + | chr8.1:30727221-30727240 | MS.gene76430:CDS | 35.0% | |
| ATCATTTACCATCGATCGAT+TGG | + | chr8.1:30728725-30728744 | MS.gene76430:CDS | 35.0% | |
| ATGGATCAGTGCTATATATC+TGG | + | chr8.1:30727455-30727474 | MS.gene76430:CDS | 35.0% | |
| ATGTTATTGAAGTCGTTACC+CGG | - | chr8.1:30727380-30727399 | None:intergenic | 35.0% | |
| CTGCAATTCCTAAGCTATTT+GGG | - | chr8.1:30727232-30727251 | None:intergenic | 35.0% | |
| GATTATGGCTTCTTCTCTAA+TGG | - | chr8.1:30727189-30727208 | None:intergenic | 35.0% | |
| GGAGAATGTGAACAACAATA+AGG | + | chr8.1:30727955-30727974 | MS.gene76430:CDS | 35.0% | |
| GGCTATAGCTCTTAATGATA+TGG | + | chr8.1:30728174-30728193 | MS.gene76430:CDS | 35.0% | |
| TCATTTACCATCGATCGATT+GGG | + | chr8.1:30728726-30728745 | MS.gene76430:CDS | 35.0% | |
| TCTCAAATGTCTGAATCACT+CGG | + | chr8.1:30728804-30728823 | MS.gene76430:CDS | 35.0% | |
| TCTGCAATTCCTAAGCTATT+TGG | - | chr8.1:30727233-30727252 | None:intergenic | 35.0% | |
| TTGCTACATTTGGGAACTTA+TGG | + | chr8.1:30728153-30728172 | MS.gene76430:CDS | 35.0% | |
| ! | TCTTAATGATATGGTCTTGC+AGG | + | chr8.1:30728183-30728202 | MS.gene76430:CDS | 35.0% |
| ! | TGGAGAACATTTTTGTTGGT+TGG | + | chr8.1:30727916-30727935 | MS.gene76430:intron | 35.0% |
| !! | ATGGTGGAGAACATTTTTGT+TGG | + | chr8.1:30727912-30727931 | MS.gene76430:intron | 35.0% |
| !! | GACAAACTTAGTTTTCTCCT+TGG | - | chr8.1:30728958-30728977 | None:intergenic | 35.0% |
| !! | GTTGGTGATTATTTAGGTTC+CGG | + | chr8.1:30727934-30727953 | MS.gene76430:intron | 35.0% |
| AACTTCAAAAAGAGACTGCG+CGG | + | chr8.1:30727416-30727435 | MS.gene76430:CDS | 40.0% | |
| AATTTCACTTCCGATGGACA+CGG | - | chr8.1:30728687-30728706 | None:intergenic | 40.0% | |
| ACATAAGGCTGTAAGAGGAA+TGG | - | chr8.1:30727535-30727554 | None:intergenic | 40.0% | |
| ACTTCCAATTTCACTTCCGA+TGG | - | chr8.1:30728693-30728712 | None:intergenic | 40.0% | |
| AGCTTAGGAATTGCAGACTT+GGG | + | chr8.1:30727236-30727255 | MS.gene76430:CDS | 40.0% | |
| ATTGGAATGCTCTCGATCAA+TGG | + | chr8.1:30728763-30728782 | MS.gene76430:CDS | 40.0% | |
| ATTTACCATCGATCGATTGG+GGG | + | chr8.1:30728728-30728747 | MS.gene76430:CDS | 40.0% | |
| CAATGATAGACTCTCCAAAG+TGG | - | chr8.1:30728890-30728909 | None:intergenic | 40.0% | |
| CATTTACCATCGATCGATTG+GGG | + | chr8.1:30728727-30728746 | MS.gene76430:CDS | 40.0% | |
| CCAAAGTGGCTAATTAGCAA+AGG | - | chr8.1:30728876-30728895 | None:intergenic | 40.0% | |
| CCTTTGCTAATTAGCCACTT+TGG | + | chr8.1:30728873-30728892 | MS.gene76430:CDS | 40.0% | |
| CGGTGAAACAGAAACTGAAA+TGG | + | chr8.1:30727436-30727455 | MS.gene76430:CDS | 40.0% | |
| GAATCCTTAACATGTGCCAT+AGG | + | chr8.1:30727740-30727759 | MS.gene76430:intron | 40.0% | |
| GAATGAGTTGCTTAACATGG+TGG | + | chr8.1:30727896-30727915 | MS.gene76430:intron | 40.0% | |
| GACGAATGAGTTGCTTAACA+TGG | + | chr8.1:30727893-30727912 | MS.gene76430:intron | 40.0% | |
| TAGCTTAGGAATTGCAGACT+TGG | + | chr8.1:30727235-30727254 | MS.gene76430:CDS | 40.0% | |
| TGCAAACAACTCCTTAGTTC+AGG | + | chr8.1:30726885-30726904 | MS.gene76430:CDS | 40.0% | |
| TTCTGGACCAAACACTTTGT+TGG | + | chr8.1:30727265-30727284 | MS.gene76430:CDS | 40.0% | |
| ! | ATTCCTCTTACAGCCTTATG+TGG | + | chr8.1:30727534-30727553 | MS.gene76430:CDS | 40.0% |
| ! | GATACCACCAACAAAGTGTT+TGG | - | chr8.1:30727275-30727294 | None:intergenic | 40.0% |
| ! | GGTTTTCTTGAACGATTTGC+CGG | + | chr8.1:30727358-30727377 | MS.gene76430:CDS | 40.0% |
| ! | GTTTTCTTGAACGATTTGCC+GGG | + | chr8.1:30727359-30727378 | MS.gene76430:CDS | 40.0% |
| ! | TGCTATATATCTGGAGTTCC+TGG | + | chr8.1:30727464-30727483 | MS.gene76430:CDS | 40.0% |
| !! | CAAGGAGTGTTGCTACATTT+GGG | + | chr8.1:30728144-30728163 | MS.gene76430:CDS | 40.0% |
| ATCCTGCCATAGAAAGAACC+AGG | - | chr8.1:30727485-30727504 | None:intergenic | 45.0% | |
| ATGGACACGGAGTGTATTGA+GGG | - | chr8.1:30728674-30728693 | None:intergenic | 45.0% | |
| CTTAGTTGATCGGATGTCCA+AGG | + | chr8.1:30728938-30728957 | MS.gene76430:CDS | 45.0% | |
| GTGCAGAGGAAGTAGTTGAA+GGG | + | chr8.1:30728071-30728090 | MS.gene76430:CDS | 45.0% | |
| GTGTCCATCGGAAGTGAAAT+TGG | + | chr8.1:30728686-30728705 | MS.gene76430:CDS | 45.0% | |
| TAGCCACATAAGGCTGTAAG+AGG | - | chr8.1:30727540-30727559 | None:intergenic | 45.0% | |
| TCAATACACTCCGTGTCCAT+CGG | + | chr8.1:30728674-30728693 | MS.gene76430:CDS | 45.0% | |
| TCGTGAATCTCCCGAATACA+AGG | + | chr8.1:30727337-30727356 | MS.gene76430:CDS | 45.0% | |
| TGCAGAGGAAGTAGTTGAAG+GGG | + | chr8.1:30728072-30728091 | MS.gene76430:CDS | 45.0% | |
| TGGACCAAACACTTTGTTGG+TGG | + | chr8.1:30727268-30727287 | MS.gene76430:CDS | 45.0% | |
| ! | CAGCCTTATGTGGCTATCTA+AGG | + | chr8.1:30727544-30727563 | MS.gene76430:CDS | 45.0% |
| ! | GGAGTTCCTGGTTCTTTCTA+TGG | + | chr8.1:30727476-30727495 | MS.gene76430:CDS | 45.0% |
| ! | TTCCTGGTTCTTTCTATGGC+AGG | + | chr8.1:30727480-30727499 | MS.gene76430:CDS | 45.0% |
| !! | GCAAGGAGTGTTGCTACATT+TGG | + | chr8.1:30728143-30728162 | MS.gene76430:CDS | 45.0% |
| !! | TGGGGGTTTCTGAAGTGAAT+TGG | + | chr8.1:30728745-30728764 | MS.gene76430:CDS | 45.0% |
| !! | TTTTCTCAAGTGTCGTGCAG+AGG | + | chr8.1:30728057-30728076 | MS.gene76430:CDS | 45.0% |
| !! | AAAAAAACTTAATTATATTT+AGG | + | chr8.1:30728512-30728531 | MS.gene76430:intron | 5.0% |
| !! | AAAAAACTTAATTATATTTA+GGG | + | chr8.1:30728513-30728532 | MS.gene76430:intron | 5.0% |
| !!! | CATATAATATTTTTTTTTAA+GGG | + | chr8.1:30727087-30727106 | MS.gene76430:intron | 5.0% |
| AGAAACCCCCAATCGATCGA+TGG | - | chr8.1:30728736-30728755 | None:intergenic | 50.0% | |
| ATGTCTGAATCACTCGGCGA+TGG | + | chr8.1:30728810-30728829 | MS.gene76430:CDS | 50.0% | |
| CGTGCAGAGGAAGTAGTTGA+AGG | + | chr8.1:30728070-30728089 | MS.gene76430:CDS | 50.0% | |
| GATGGACACGGAGTGTATTG+AGG | - | chr8.1:30728675-30728694 | None:intergenic | 50.0% | |
| GCAGAGGAAGTAGTTGAAGG+GGG | + | chr8.1:30728073-30728092 | MS.gene76430:CDS | 50.0% | |
| GTGCCCTATGGCACATGTTA+AGG | - | chr8.1:30727747-30727766 | None:intergenic | 50.0% | |
| ACTGAGGGTCATGTGCCCTA+TGG | - | chr8.1:30727759-30727778 | None:intergenic | 55.0% | |
| ! | GCAGACTTGGGTTGCTCTTC+TGG | + | chr8.1:30727248-30727267 | MS.gene76430:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30726856 | 30729010 | 30726856 | ID=MS.gene76430 |
| chr8.1 | mRNA | 30726856 | 30729010 | 30726856 | ID=MS.gene76430.t1;Parent=MS.gene76430 |
| chr8.1 | exon | 30726856 | 30726906 | 30726856 | ID=MS.gene76430.t1.exon1;Parent=MS.gene76430.t1 |
| chr8.1 | CDS | 30726856 | 30726906 | 30726856 | ID=cds.MS.gene76430.t1;Parent=MS.gene76430.t1 |
| chr8.1 | exon | 30727161 | 30727565 | 30727161 | ID=MS.gene76430.t1.exon2;Parent=MS.gene76430.t1 |
| chr8.1 | CDS | 30727161 | 30727565 | 30727161 | ID=cds.MS.gene76430.t1;Parent=MS.gene76430.t1 |
| chr8.1 | exon | 30727950 | 30728204 | 30727950 | ID=MS.gene76430.t1.exon3;Parent=MS.gene76430.t1 |
| chr8.1 | CDS | 30727950 | 30728204 | 30727950 | ID=cds.MS.gene76430.t1;Parent=MS.gene76430.t1 |
| chr8.1 | exon | 30728633 | 30729010 | 30728633 | ID=MS.gene76430.t1.exon4;Parent=MS.gene76430.t1 |
| chr8.1 | CDS | 30728633 | 30729010 | 30728633 | ID=cds.MS.gene76430.t1;Parent=MS.gene76430.t1 |
| Gene Sequence |
| Protein sequence |
