Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59406.t1 | XP_003612068.1 | 93.3 | 371 | 21 | 2 | 1 | 367 | 11 | 381 | 3.70E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59406.t1 | Q9SPV4 | 58.7 | 368 | 139 | 5 | 1 | 366 | 1 | 357 | 7.7e-120 | 431.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59406.t1 | B7FIK3 | 93.3 | 371 | 21 | 2 | 1 | 367 | 11 | 381 | 2.7e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59406 | MS.gene024301 | PPI |
| MS.gene59406 | MS.gene037613 | PPI |
| MS.gene59406 | MS.gene049577 | PPI |
| MS.gene59406 | MS.gene033734 | PPI |
| MS.gene59406 | MS.gene024314 | PPI |
| MS.gene59406 | MS.gene033735 | PPI |
| MS.gene024301 | MS.gene59406 | PPI |
| MS.gene59406 | MS.gene52303 | PPI |
| MS.gene59406 | MS.gene73290 | PPI |
| MS.gene59406 | MS.gene014262 | PPI |
| MS.gene59406 | MS.gene024315 | PPI |
| MS.gene59406 | MS.gene76430 | PPI |
| MS.gene59406 | MS.gene008450 | PPI |
| MS.gene52320 | MS.gene59406 | PPI |
| MS.gene59406 | MS.gene063148 | PPI |
| MS.gene59406 | MS.gene68796 | PPI |
| MS.gene59406 | MS.gene012028 | PPI |
| MS.gene59406 | MS.gene000556 | PPI |
| MS.gene59406 | MS.gene033750 | PPI |
| MS.gene59406 | MS.gene87476 | PPI |
| MS.gene59406 | MS.gene02421 | PPI |
| MS.gene59406 | MS.gene07908 | PPI |
| MS.gene59406 | MS.gene024299 | PPI |
| MS.gene64697 | MS.gene59406 | PPI |
| MS.gene59406 | MS.gene68203 | PPI |
| MS.gene59406 | MS.gene52320 | PPI |
| MS.gene99450 | MS.gene59406 | PPI |
| MS.gene033748 | MS.gene59406 | PPI |
| MS.gene59406 | MS.gene010553 | PPI |
| MS.gene59406 | MS.gene73369 | PPI |
| MS.gene59406 | MS.gene25135 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59406.t1 | MTR_5g020940 | 93.261 | 371 | 21 | 2 | 1 | 367 | 11 | 381 | 0.0 | 717 |
| MS.gene59406.t1 | MTR_8g077040 | 69.565 | 368 | 109 | 1 | 1 | 365 | 1 | 368 | 0.0 | 555 |
| MS.gene59406.t1 | MTR_3g467270 | 66.125 | 369 | 121 | 2 | 1 | 366 | 1 | 368 | 0.0 | 530 |
| MS.gene59406.t1 | MTR_8g076900 | 63.388 | 366 | 129 | 1 | 1 | 366 | 1 | 361 | 2.05e-176 | 494 |
| MS.gene59406.t1 | MTR_4g018820 | 62.670 | 367 | 129 | 1 | 1 | 367 | 1 | 359 | 7.15e-176 | 493 |
| MS.gene59406.t1 | MTR_6g056070 | 61.035 | 367 | 131 | 2 | 1 | 366 | 1 | 356 | 1.73e-167 | 472 |
| MS.gene59406.t1 | MTR_8g020700 | 58.967 | 368 | 139 | 2 | 1 | 367 | 1 | 357 | 3.69e-164 | 463 |
| MS.gene59406.t1 | MTR_8g020690 | 58.856 | 367 | 142 | 3 | 1 | 366 | 1 | 359 | 4.46e-163 | 461 |
| MS.gene59406.t1 | MTR_8g076900 | 66.531 | 245 | 82 | 0 | 1 | 245 | 1 | 245 | 3.60e-122 | 353 |
| MS.gene59406.t1 | MTR_8g020700 | 62.353 | 255 | 95 | 1 | 1 | 254 | 1 | 255 | 6.75e-120 | 347 |
| MS.gene59406.t1 | MTR_3g117060 | 43.548 | 372 | 200 | 2 | 1 | 366 | 1 | 368 | 9.81e-109 | 323 |
| MS.gene59406.t1 | MTR_1g022465 | 46.073 | 382 | 185 | 8 | 1 | 366 | 1 | 377 | 2.37e-105 | 315 |
| MS.gene59406.t1 | MTR_1g022455 | 45.812 | 382 | 187 | 7 | 1 | 366 | 1 | 378 | 1.43e-104 | 313 |
| MS.gene59406.t1 | MTR_3g467560 | 43.968 | 373 | 191 | 5 | 1 | 365 | 25 | 387 | 3.30e-102 | 307 |
| MS.gene59406.t1 | MTR_5g046110 | 40.503 | 358 | 196 | 2 | 1 | 352 | 61 | 407 | 6.95e-97 | 295 |
| MS.gene59406.t1 | MTR_7g084620 | 40.483 | 373 | 204 | 7 | 1 | 365 | 1 | 363 | 3.02e-88 | 270 |
| MS.gene59406.t1 | MTR_7g084350 | 38.753 | 369 | 214 | 4 | 3 | 365 | 1 | 363 | 1.33e-87 | 269 |
| MS.gene59406.t1 | MTR_8g077030 | 53.881 | 219 | 79 | 2 | 1 | 219 | 1 | 197 | 1.79e-75 | 243 |
| MS.gene59406.t1 | MTR_7g084330 | 36.478 | 318 | 171 | 6 | 54 | 365 | 39 | 331 | 2.48e-60 | 197 |
| MS.gene59406.t1 | MTR_3g054330 | 34.722 | 360 | 200 | 10 | 1 | 340 | 10 | 354 | 1.71e-55 | 186 |
| MS.gene59406.t1 | MTR_5g093900 | 31.888 | 392 | 224 | 12 | 1 | 364 | 13 | 389 | 3.53e-51 | 175 |
| MS.gene59406.t1 | MTR_1g108660 | 35.119 | 336 | 160 | 12 | 28 | 341 | 11 | 310 | 1.66e-50 | 172 |
| MS.gene59406.t1 | MTR_3g052700 | 33.069 | 378 | 215 | 11 | 1 | 355 | 13 | 375 | 6.88e-50 | 172 |
| MS.gene59406.t1 | MTR_6g015620 | 32.500 | 120 | 81 | 0 | 247 | 366 | 18 | 137 | 1.02e-14 | 70.9 |
| MS.gene59406.t1 | MTR_7g084340 | 29.545 | 132 | 86 | 2 | 237 | 365 | 2 | 129 | 3.47e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59406.t1 | AT1G19640 | 46.612 | 369 | 175 | 6 | 1 | 347 | 1 | 369 | 2.59e-97 | 295 |
| MS.gene59406.t1 | AT3G11480 | 41.304 | 368 | 195 | 6 | 5 | 366 | 27 | 379 | 7.45e-97 | 293 |
| MS.gene59406.t1 | AT4G36470 | 41.316 | 380 | 194 | 6 | 3 | 367 | 6 | 371 | 7.66e-96 | 290 |
| MS.gene59406.t1 | AT5G66430 | 40.220 | 363 | 203 | 5 | 9 | 366 | 1 | 354 | 2.24e-95 | 288 |
| MS.gene59406.t1 | AT5G04370 | 41.436 | 362 | 200 | 4 | 7 | 366 | 39 | 390 | 6.93e-95 | 288 |
| MS.gene59406.t1 | AT5G04370 | 41.436 | 362 | 200 | 4 | 7 | 366 | 58 | 409 | 8.91e-95 | 289 |
| MS.gene59406.t1 | AT5G04370 | 41.436 | 362 | 200 | 4 | 7 | 366 | 44 | 395 | 9.71e-95 | 288 |
| MS.gene59406.t1 | AT5G04380 | 39.344 | 366 | 206 | 5 | 6 | 366 | 35 | 389 | 9.74e-91 | 278 |
| MS.gene59406.t1 | AT5G38020 | 41.398 | 372 | 201 | 5 | 6 | 366 | 3 | 368 | 1.33e-90 | 276 |
| MS.gene59406.t1 | AT3G21950 | 40.323 | 372 | 205 | 5 | 6 | 366 | 3 | 368 | 9.33e-90 | 275 |
| MS.gene59406.t1 | AT5G04380 | 39.071 | 366 | 200 | 6 | 6 | 366 | 31 | 378 | 6.86e-87 | 267 |
| MS.gene59406.t1 | AT2G14060 | 39.891 | 366 | 211 | 5 | 6 | 366 | 11 | 372 | 1.41e-85 | 264 |
| MS.gene59406.t1 | AT5G04380 | 40.000 | 320 | 183 | 3 | 48 | 366 | 7 | 318 | 3.56e-84 | 258 |
| MS.gene59406.t1 | AT3G21950 | 36.881 | 404 | 206 | 6 | 6 | 366 | 3 | 400 | 5.80e-83 | 258 |
| MS.gene59406.t1 | AT5G38020 | 41.337 | 329 | 177 | 4 | 48 | 366 | 7 | 329 | 1.03e-81 | 253 |
| MS.gene59406.t1 | AT1G68040 | 36.364 | 352 | 186 | 9 | 3 | 340 | 7 | 334 | 7.47e-65 | 210 |
| MS.gene59406.t1 | AT2G14060 | 42.982 | 228 | 126 | 2 | 6 | 232 | 11 | 235 | 2.60e-63 | 202 |
| MS.gene59406.t1 | AT5G55250 | 34.181 | 354 | 211 | 8 | 1 | 340 | 13 | 358 | 1.15e-57 | 192 |
| MS.gene59406.t1 | AT5G38100 | 35.262 | 363 | 191 | 11 | 9 | 356 | 10 | 343 | 7.67e-52 | 176 |
| MS.gene59406.t1 | AT5G38100 | 36.508 | 315 | 159 | 10 | 54 | 356 | 35 | 320 | 1.93e-49 | 169 |
| MS.gene59406.t1 | AT4G26420 | 33.613 | 357 | 206 | 10 | 3 | 341 | 7 | 350 | 2.70e-49 | 170 |
| MS.gene59406.t1 | AT5G55250 | 33.645 | 321 | 191 | 8 | 34 | 340 | 8 | 320 | 2.74e-49 | 169 |
| MS.gene59406.t1 | AT5G37970 | 33.514 | 370 | 199 | 11 | 5 | 356 | 6 | 346 | 3.42e-49 | 169 |
| MS.gene59406.t1 | AT1G15125 | 33.428 | 353 | 192 | 12 | 9 | 346 | 1 | 325 | 8.48e-49 | 168 |
| MS.gene59406.t1 | AT5G37990 | 33.423 | 371 | 198 | 14 | 5 | 356 | 6 | 346 | 1.06e-48 | 168 |
| MS.gene59406.t1 | AT5G56300 | 30.878 | 353 | 220 | 8 | 3 | 341 | 18 | 360 | 7.66e-48 | 166 |
| MS.gene59406.t1 | AT5G38780 | 32.873 | 362 | 199 | 11 | 5 | 348 | 6 | 341 | 1.04e-47 | 166 |
| MS.gene59406.t1 | AT5G38780 | 33.010 | 309 | 167 | 9 | 54 | 348 | 10 | 292 | 3.32e-43 | 152 |
| MS.gene59406.t1 | AT3G44840 | 30.769 | 338 | 200 | 7 | 9 | 338 | 7 | 318 | 2.45e-41 | 148 |
| MS.gene59406.t1 | AT4G26420 | 38.158 | 228 | 123 | 7 | 3 | 220 | 7 | 226 | 1.14e-38 | 139 |
| MS.gene59406.t1 | AT3G44860 | 32.476 | 311 | 188 | 7 | 9 | 310 | 7 | 304 | 1.25e-37 | 139 |
| MS.gene59406.t1 | AT1G66720 | 31.488 | 289 | 170 | 8 | 9 | 284 | 9 | 282 | 4.71e-37 | 137 |
| MS.gene59406.t1 | AT1G66700 | 29.070 | 344 | 201 | 12 | 9 | 338 | 9 | 323 | 2.44e-36 | 135 |
| MS.gene59406.t1 | AT3G44870 | 32.095 | 296 | 153 | 8 | 9 | 284 | 7 | 274 | 3.17e-36 | 135 |
| MS.gene59406.t1 | AT4G26420 | 38.288 | 222 | 119 | 8 | 9 | 220 | 1 | 214 | 3.90e-36 | 132 |
| MS.gene59406.t1 | AT1G15125 | 33.858 | 254 | 141 | 9 | 9 | 249 | 1 | 240 | 6.50e-34 | 126 |
| MS.gene59406.t1 | AT5G38100 | 38.249 | 217 | 112 | 5 | 9 | 213 | 10 | 216 | 1.49e-33 | 125 |
| MS.gene59406.t1 | AT5G38100 | 38.249 | 217 | 112 | 5 | 9 | 213 | 10 | 216 | 1.56e-33 | 125 |
| MS.gene59406.t1 | AT1G66690 | 29.870 | 308 | 166 | 9 | 1 | 284 | 1 | 282 | 4.27e-33 | 126 |
| MS.gene59406.t1 | AT1G66700 | 34.259 | 216 | 117 | 7 | 9 | 213 | 9 | 210 | 8.95e-30 | 115 |
Find 63 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAATGTTGCTATATT+TGG | 0.110287 | 5.4:+12792612 | MS.gene59406:CDS |
| GCAGATTTGGGTTGTTCTTC+TGG | 0.117703 | 5.4:+12790828 | MS.gene59406:CDS |
| TCGTATGGTTCTCACAATTT+TGG | 0.150346 | 5.4:+12792565 | MS.gene59406:CDS |
| AAGGCTAGGTATTGCAGATT+TGG | 0.245681 | 5.4:+12790815 | MS.gene59406:CDS |
| TTCATGAAGACTTGGTATTC+TGG | 0.260814 | 5.4:-12790927 | None:intergenic |
| TTATTATTCTCTACACCTTT+AGG | 0.268964 | 5.4:-12792422 | None:intergenic |
| CAGATTTGGGTTGTTCTTCT+GGG | 0.282637 | 5.4:+12790829 | MS.gene59406:CDS |
| GAGACTCGTGATTATGTTCT+TGG | 0.286361 | 5.4:-12790905 | None:intergenic |
| TTTGCAGTAGAGGTTCTTTA+TGG | 0.293086 | 5.4:-12790781 | None:intergenic |
| TAAAGGTGTAGAGAATAATA+AGG | 0.308607 | 5.4:+12792424 | MS.gene59406:CDS |
| TTTAGCTGATCGCATGTCTA+AGG | 0.327571 | 5.4:+12793538 | MS.gene59406:CDS |
| ACTGCAAAACGTTCCCAAAA+AGG | 0.332500 | 5.4:+12790796 | MS.gene59406:CDS |
| TCCATCAGAAGTAAAATTAG+AGG | 0.338597 | 5.4:+12793298 | MS.gene59406:CDS |
| CAAAGAATGTTGCTATATTT+GGG | 0.351384 | 5.4:+12792613 | MS.gene59406:CDS |
| AGGCTAGGTATTGCAGATTT+GGG | 0.357011 | 5.4:+12790816 | MS.gene59406:CDS |
| GGCTGCAGCTGAACCTTTGT+TGG | 0.360677 | 5.4:+12793460 | MS.gene59406:CDS |
| GATATCACAAACAAAGTGTT+TGG | 0.381129 | 5.4:-12790852 | None:intergenic |
| TAAGCGTTGAGCACGTTTGC+GGG | 0.397564 | 5.4:-12792473 | None:intergenic |
| GTCATTCACTATTGATCGTC+TGG | 0.410501 | 5.4:+12793334 | MS.gene59406:CDS |
| TATCCAAACCACTTATTGAC+GGG | 0.413372 | 5.4:+12793411 | MS.gene59406:CDS |
| CCTTTGTTGGTCAGTCACTT+TGG | 0.420436 | 5.4:+12793473 | MS.gene59406:CDS |
| CTCCACATGAATGGAGGAAC+TGG | 0.431401 | 5.4:+12790517 | MS.gene59406:CDS |
| AATTATAATGGAGGAGCAAA+TGG | 0.437256 | 5.4:+12793244 | MS.gene59406:CDS |
| ACAATGTCACAAATTGCATC+AGG | 0.442481 | 5.4:+12793438 | MS.gene59406:CDS |
| TGCACTTAATGACATGGTCT+TGG | 0.443102 | 5.4:+12792649 | MS.gene59406:CDS |
| GGTCATGTAGGGAATTATAA+TGG | 0.444602 | 5.4:+12793232 | MS.gene59406:intron |
| TGCCCCGTCAATAAGTGGTT+TGG | 0.455704 | 5.4:-12793414 | None:intergenic |
| ATTCCTCTTACAGCCTTCAA+TGG | 0.459080 | 5.4:+12791114 | MS.gene59406:CDS |
| GTGATTACTTAGGTTCCTAA+AGG | 0.468002 | 5.4:+12792407 | MS.gene59406:intron |
| TTGTATGCCCCGTCAATAAG+TGG | 0.482099 | 5.4:-12793419 | None:intergenic |
| GTCTTCATGAATGATCTTCA+AGG | 0.490191 | 5.4:+12790939 | MS.gene59406:CDS |
| CTCCAGTTCCTCCATTCATG+TGG | 0.493129 | 5.4:-12790519 | None:intergenic |
| GATGAAGTGGAAGGTGGGAT+TGG | 0.497921 | 5.4:+12791017 | MS.gene59406:CDS |
| AAAGGTGTAGAGAATAATAA+GGG | 0.504329 | 5.4:+12792425 | MS.gene59406:CDS |
| ACTTAATGACATGGTCTTGG+AGG | 0.509131 | 5.4:+12792652 | MS.gene59406:CDS |
| TTATCCAAACCACTTATTGA+CGG | 0.520831 | 5.4:+12793410 | MS.gene59406:CDS |
| CAGCCTTCAATGGCTCTCAC+AGG | 0.521164 | 5.4:+12791124 | MS.gene59406:CDS |
| ATAAGCGTTGAGCACGTTTG+CGG | 0.524587 | 5.4:-12792474 | None:intergenic |
| TGCTGTTGCACTTAATGACA+TGG | 0.525913 | 5.4:+12792643 | MS.gene59406:CDS |
| GTGCAGAAGAACTTGTTGAC+GGG | 0.527202 | 5.4:+12792540 | MS.gene59406:CDS |
| AGAGAAACTAAATGATGAAG+TGG | 0.532950 | 5.4:+12791004 | MS.gene59406:CDS |
| GAACAAGTACTCCACATGAA+TGG | 0.537606 | 5.4:+12790508 | MS.gene59406:CDS |
| TAAATGATGAAGTGGAAGGT+GGG | 0.543127 | 5.4:+12791012 | MS.gene59406:CDS |
| GAGAGAAACAAGGATGAAAG+TGG | 0.553371 | 5.4:+12790486 | None:intergenic |
| CTAAATGATGAAGTGGAAGG+TGG | 0.560920 | 5.4:+12791011 | MS.gene59406:CDS |
| GAGCCATTGAAGGCTGTAAG+AGG | 0.561556 | 5.4:-12791117 | None:intergenic |
| GAACCTGTGAGAGCCATTGA+AGG | 0.574051 | 5.4:-12791127 | None:intergenic |
| GAAGATCATTCATGAAGACT+TGG | 0.574260 | 5.4:-12790935 | None:intergenic |
| TGGAAGTAACAGAAGTACAT+TGG | 0.580245 | 5.4:+12793354 | MS.gene59406:CDS |
| TCTTCATGAATGATCTTCAA+GGG | 0.587035 | 5.4:+12790940 | MS.gene59406:CDS |
| CCAAAGTGACTGACCAACAA+AGG | 0.591313 | 5.4:-12793473 | None:intergenic |
| CGTGCAGAAGAACTTGTTGA+CGG | 0.591341 | 5.4:+12792539 | MS.gene59406:CDS |
| AAGCGTTGAGCACGTTTGCG+GGG | 0.600291 | 5.4:-12792472 | None:intergenic |
| AAACTAAATGATGAAGTGGA+AGG | 0.604990 | 5.4:+12791008 | MS.gene59406:CDS |
| TAATAAGGGTAACATTTACA+TGG | 0.606370 | 5.4:+12792439 | MS.gene59406:CDS |
| ATCCTGCCATAAAATGAACC+AGG | 0.626456 | 5.4:-12791062 | None:intergenic |
| TGCAGAAGAACTTGTTGACG+GGG | 0.630200 | 5.4:+12792541 | MS.gene59406:CDS |
| CAATGTCACAAATTGCATCA+GGG | 0.643382 | 5.4:+12793439 | MS.gene59406:CDS |
| CAAGTACTCCACATGAATGG+AGG | 0.651462 | 5.4:+12790511 | MS.gene59406:CDS |
| CATGTAGGGAATTATAATGG+AGG | 0.653703 | 5.4:+12793235 | MS.gene59406:intron |
| ATCCAAACCACTTATTGACG+GGG | 0.655696 | 5.4:+12793412 | MS.gene59406:CDS |
| GATGGAGATGGTGTGTACTG+AGG | 0.725953 | 5.4:-12793281 | None:intergenic |
| GCAGAAGAACTTGTTGACGG+GGG | 0.729596 | 5.4:+12792542 | MS.gene59406:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATTAAAAAAAATCATA+AGG | - | chr5.4:12791332-12791351 | None:intergenic | 10.0% |
| !! | ATGAAAATATATAGTTATAA+TGG | + | chr5.4:12791175-12791194 | MS.gene59406:intron | 10.0% |
| !! | TCTAAATTATAAAATAACAT+AGG | - | chr5.4:12792904-12792923 | None:intergenic | 10.0% |
| !!! | AAAAATAAAGATAACTTTTA+TGG | + | chr5.4:12792089-12792108 | MS.gene59406:intron | 10.0% |
| !!! | AATTACGAAAATATTTTTAT+TGG | + | chr5.4:12793211-12793230 | MS.gene59406:intron | 10.0% |
| !! | AAAATAGGTTTAATCTATAA+AGG | - | chr5.4:12792841-12792860 | None:intergenic | 15.0% |
| !! | AAATAGGTTTAATCTATAAA+GGG | - | chr5.4:12792840-12792859 | None:intergenic | 15.0% |
| !! | AAGAATATTCAAGAAAATTT+CGG | - | chr5.4:12793175-12793194 | None:intergenic | 15.0% |
| !! | ATTTAGACTAACTTAATATA+GGG | - | chr5.4:12791737-12791756 | None:intergenic | 15.0% |
| !! | CAATAAAAGTAACAAAAATT+TGG | - | chr5.4:12791506-12791525 | None:intergenic | 15.0% |
| !! | TAAATTATATTGTGTGAAAT+CGG | + | chr5.4:12792167-12792186 | MS.gene59406:intron | 15.0% |
| !!! | ATATTTAGAACAAAAAAAGT+GGG | + | chr5.4:12791460-12791479 | MS.gene59406:intron | 15.0% |
| !!! | GAATAAATGTTTTAATAAAG+AGG | - | chr5.4:12792975-12792994 | None:intergenic | 15.0% |
| !!! | TAAAATAATTGCTATTTGTT+TGG | + | chr5.4:12792385-12792404 | MS.gene59406:intron | 15.0% |
| !!! | TTCATAAATAAGAGTATTAT+TGG | - | chr5.4:12791160-12791179 | None:intergenic | 15.0% |
| !! | ACATGATGAACAAATAATAA+GGG | + | chr5.4:12791219-12791238 | MS.gene59406:intron | 20.0% |
| !! | CATTTAGACTAACTTAATAT+AGG | - | chr5.4:12791738-12791757 | None:intergenic | 20.0% |
| !!! | AAAAACAAAAGATGTGTTTT+GGG | - | chr5.4:12792326-12792345 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTGGTCATGT+AGG | + | chr5.4:12793220-12793239 | MS.gene59406:intron | 20.0% |
| !!! | ATATTTTATTACCTGAACTA+AGG | - | chr5.4:12790566-12790585 | None:intergenic | 20.0% |
| !!! | ATATTTTTATTGGTCATGTA+GGG | + | chr5.4:12793221-12793240 | MS.gene59406:intron | 20.0% |
| !!! | ATGATTTCAACAACATTTTT+AGG | + | chr5.4:12790964-12790983 | MS.gene59406:CDS | 20.0% |
| !!! | ATGCAATTTTTATTTGTATC+CGG | + | chr5.4:12791936-12791955 | MS.gene59406:intron | 20.0% |
| !!! | ATTTTATATGGTACAGAAAA+AGG | + | chr5.4:12790725-12790744 | MS.gene59406:intron | 20.0% |
| !!! | CATATTTAGAACAAAAAAAG+TGG | + | chr5.4:12791459-12791478 | MS.gene59406:intron | 20.0% |
| !!! | GAGTATTTTATAAACTTGTT+TGG | + | chr5.4:12792745-12792764 | MS.gene59406:intron | 20.0% |
| !!! | GTGTATTTACAACTTTTTTT+AGG | - | chr5.4:12791201-12791220 | None:intergenic | 20.0% |
| !!! | TAAAAACAAAAGATGTGTTT+TGG | - | chr5.4:12792327-12792346 | None:intergenic | 20.0% |
| !!! | TAAATAAGAGTATTATTGGT+AGG | - | chr5.4:12791156-12791175 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTTTTAAATTGCT+AGG | + | chr5.4:12792334-12792353 | MS.gene59406:intron | 20.0% |
| !!! | TTTTACATTTAAGAAAAGTC+TGG | + | chr5.4:12793113-12793132 | MS.gene59406:intron | 20.0% |
| !!! | TTTTATATGGTACAGAAAAA+GGG | + | chr5.4:12790726-12790745 | MS.gene59406:intron | 20.0% |
| ! | AATCTTGGATTACTAATTGA+TGG | + | chr5.4:12793136-12793155 | MS.gene59406:intron | 25.0% |
| ! | ACCTAAAAAATAAGTGATAG+AGG | + | chr5.4:12792250-12792269 | MS.gene59406:intron | 25.0% |
| ! | AGTTCATTAAAGACGAAAAA+TGG | + | chr5.4:12793023-12793042 | MS.gene59406:intron | 25.0% |
| ! | CAAAAAGTTGAAACTTCATA+AGG | + | chr5.4:12791569-12791588 | MS.gene59406:intron | 25.0% |
| ! | CAAAGAATGTTGCTATATTT+GGG | + | chr5.4:12792613-12792632 | MS.gene59406:CDS | 25.0% |
| ! | CACATGATGAACAAATAATA+AGG | + | chr5.4:12791218-12791237 | MS.gene59406:intron | 25.0% |
| ! | CATAGACTAAAATTGTTTGT+TGG | - | chr5.4:12791402-12791421 | None:intergenic | 25.0% |
| ! | TAAAACCTAAGTTATTGTTG+TGG | - | chr5.4:12791838-12791857 | None:intergenic | 25.0% |
| ! | TAATAAGGGTAACATTTACA+TGG | + | chr5.4:12792439-12792458 | MS.gene59406:CDS | 25.0% |
| ! | TATAGATGTAAGACATAGAA+GGG | - | chr5.4:12793070-12793089 | None:intergenic | 25.0% |
| ! | TTATTATTCTCTACACCTTT+AGG | - | chr5.4:12792425-12792444 | None:intergenic | 25.0% |
| !! | AAACTCATTTTCAAACTGTA+TGG | - | chr5.4:12792199-12792218 | None:intergenic | 25.0% |
| !! | AAAGGTGTAGAGAATAATAA+GGG | + | chr5.4:12792425-12792444 | MS.gene59406:CDS | 25.0% |
| !! | ACTATCATTGAAGAAGTTTT+TGG | + | chr5.4:12793500-12793519 | MS.gene59406:CDS | 25.0% |
| !! | ATTGGTCAAATCTTTTTCTA+TGG | + | chr5.4:12791035-12791054 | MS.gene59406:CDS | 25.0% |
| !! | CTTACGATGAAGATTTTATA+TGG | + | chr5.4:12790713-12790732 | MS.gene59406:intron | 25.0% |
| !! | GGGATACTATTTAATTTATG+AGG | - | chr5.4:12792306-12792325 | None:intergenic | 25.0% |
| !! | TAAAGGTGTAGAGAATAATA+AGG | + | chr5.4:12792424-12792443 | MS.gene59406:CDS | 25.0% |
| !! | TATTTGTTTGGTGATTACTT+AGG | + | chr5.4:12792397-12792416 | MS.gene59406:intron | 25.0% |
| !! | TTGAAAATGAGTTTTGCATA+AGG | + | chr5.4:12792205-12792224 | MS.gene59406:intron | 25.0% |
| !! | TTGGTCAAATCTTTTTCTAT+GGG | + | chr5.4:12791036-12791055 | MS.gene59406:CDS | 25.0% |
| !! | TTTTATGTTCCAATAGCTTT+TGG | + | chr5.4:12791870-12791889 | MS.gene59406:intron | 25.0% |
| !!! | AAATTAGAGGTTTTGAAAGA+AGG | + | chr5.4:12793311-12793330 | MS.gene59406:CDS | 25.0% |
| !!! | AATTAGAGGTTTTGAAAGAA+GGG | + | chr5.4:12793312-12793331 | MS.gene59406:CDS | 25.0% |
| !!! | ATGAAATGCATTGTTTTTGT+TGG | - | chr5.4:12791092-12791111 | None:intergenic | 25.0% |
| !!! | TATTCTTGATAACGTTGTAA+AGG | + | chr5.4:12793188-12793207 | MS.gene59406:intron | 25.0% |
| !!! | TCCTCTATCACTTATTTTTT+AGG | - | chr5.4:12792254-12792273 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGTGAAATCCATA+TGG | - | chr5.4:12792240-12792259 | None:intergenic | 25.0% |
| AAACTAAATGATGAAGTGGA+AGG | + | chr5.4:12791008-12791027 | MS.gene59406:CDS | 30.0% | |
| AGAGAAACTAAATGATGAAG+TGG | + | chr5.4:12791004-12791023 | MS.gene59406:CDS | 30.0% | |
| ATACTCCACAACAATAACTT+AGG | + | chr5.4:12791830-12791849 | MS.gene59406:intron | 30.0% | |
| ATAGATGTAAGACATAGAAG+GGG | - | chr5.4:12793069-12793088 | None:intergenic | 30.0% | |
| CAATATCTGTTACAAACACA+AGG | - | chr5.4:12791985-12792004 | None:intergenic | 30.0% | |
| CTATAGATGTAAGACATAGA+AGG | - | chr5.4:12793071-12793090 | None:intergenic | 30.0% | |
| GAGCGAATTATCAACTTATA+AGG | + | chr5.4:12792698-12792717 | MS.gene59406:intron | 30.0% | |
| GCAAAGAATGTTGCTATATT+TGG | + | chr5.4:12792612-12792631 | MS.gene59406:CDS | 30.0% | |
| TCAAATTTCTTGACATAGAC+AGG | + | chr5.4:12791788-12791807 | MS.gene59406:intron | 30.0% | |
| TCATGAAAACCAAAAGCTAT+TGG | - | chr5.4:12791882-12791901 | None:intergenic | 30.0% | |
| TCCATCAGAAGTAAAATTAG+AGG | + | chr5.4:12793298-12793317 | MS.gene59406:CDS | 30.0% | |
| TCTTCATGAATGATCTTCAA+GGG | + | chr5.4:12790940-12790959 | MS.gene59406:CDS | 30.0% | |
| TTATCCAAACCACTTATTGA+CGG | + | chr5.4:12793410-12793429 | MS.gene59406:CDS | 30.0% | |
| TTCAAAAAACTCCTTAGTTC+AGG | + | chr5.4:12790552-12790571 | MS.gene59406:CDS | 30.0% | |
| ! | AAAATGAGTTTTGCATAAGG+TGG | + | chr5.4:12792208-12792227 | MS.gene59406:intron | 30.0% |
| ! | AATTATAATGGAGGAGCAAA+TGG | + | chr5.4:12793244-12793263 | MS.gene59406:CDS | 30.0% |
| ! | AATTTTACTTCTGATGGAGA+TGG | - | chr5.4:12793296-12793315 | None:intergenic | 30.0% |
| ! | ACCTCTAATTTTACTTCTGA+TGG | - | chr5.4:12793302-12793321 | None:intergenic | 30.0% |
| ! | GATATCACAAACAAAGTGTT+TGG | - | chr5.4:12790855-12790874 | None:intergenic | 30.0% |
| ! | GCAGCTACATAATCATATTT+TGG | + | chr5.4:12791591-12791610 | MS.gene59406:intron | 30.0% |
| ! | GTTTGTTGGATAATTTCGTA+GGG | - | chr5.4:12791388-12791407 | None:intergenic | 30.0% |
| ! | TGGTCAAATCTTTTTCTATG+GGG | + | chr5.4:12791037-12791056 | MS.gene59406:CDS | 30.0% |
| ! | TGTTTGTTGGATAATTTCGT+AGG | - | chr5.4:12791389-12791408 | None:intergenic | 30.0% |
| ! | TTAAGAAAAGTCTGGAATCT+TGG | + | chr5.4:12793121-12793140 | MS.gene59406:intron | 30.0% |
| !! | CAATTTTTATTTGTATCCGG+TGG | + | chr5.4:12791939-12791958 | MS.gene59406:intron | 30.0% |
| !! | TAAGAGTATTATTGGTAGGA+TGG | - | chr5.4:12791152-12791171 | None:intergenic | 30.0% |
| !! | TGTTTTTAAATTGCTAGGAG+TGG | + | chr5.4:12792339-12792358 | MS.gene59406:intron | 30.0% |
| !!! | CTTTTGGTTTTCATGATTGA+TGG | + | chr5.4:12791886-12791905 | MS.gene59406:intron | 30.0% |
| !!! | TTACGTGCGATCTTTTTTAT+GGG | - | chr5.4:12790606-12790625 | None:intergenic | 30.0% |
| !!! | TTTACGTGCGATCTTTTTTA+TGG | - | chr5.4:12790607-12790626 | None:intergenic | 30.0% |
| AAATGTAAAAGAGATGCACC+AGG | - | chr5.4:12793103-12793122 | None:intergenic | 35.0% | |
| AATGTAAAAGAGATGCACCA+GGG | - | chr5.4:12793102-12793121 | None:intergenic | 35.0% | |
| ACAATGTCACAAATTGCATC+AGG | + | chr5.4:12793438-12793457 | MS.gene59406:CDS | 35.0% | |
| CAATGTCACAAATTGCATCA+GGG | + | chr5.4:12793439-12793458 | MS.gene59406:CDS | 35.0% | |
| CATGTAGGGAATTATAATGG+AGG | + | chr5.4:12793235-12793254 | MS.gene59406:intron | 35.0% | |
| GAAGATCATTCATGAAGACT+TGG | - | chr5.4:12790938-12790957 | None:intergenic | 35.0% | |
| GGTCATGTAGGGAATTATAA+TGG | + | chr5.4:12793232-12793251 | MS.gene59406:intron | 35.0% | |
| GTCTTCATGAATGATCTTCA+AGG | + | chr5.4:12790939-12790958 | MS.gene59406:CDS | 35.0% | |
| GTGATTACTTAGGTTCCTAA+AGG | + | chr5.4:12792407-12792426 | MS.gene59406:intron | 35.0% | |
| TAAATGATGAAGTGGAAGGT+GGG | + | chr5.4:12791012-12791031 | MS.gene59406:CDS | 35.0% | |
| TATCCAAACCACTTATTGAC+GGG | + | chr5.4:12793411-12793430 | MS.gene59406:CDS | 35.0% | |
| TTGGTCAAACAAGATGTGTT+TGG | + | chr5.4:12792764-12792783 | MS.gene59406:intron | 35.0% | |
| TTTGCAGTAGAGGTTCTTTA+TGG | - | chr5.4:12790784-12790803 | None:intergenic | 35.0% | |
| ! | ACTTTTAGCATACATGTGCA+GGG | + | chr5.4:12792016-12792035 | MS.gene59406:intron | 35.0% |
| ! | CGTATGGTTCTCACAATTTT+GGG | + | chr5.4:12792566-12792585 | MS.gene59406:CDS | 35.0% |
| ! | TCGTATGGTTCTCACAATTT+TGG | + | chr5.4:12792565-12792584 | MS.gene59406:CDS | 35.0% |
| ! | TGGAAGTAACAGAAGTACAT+TGG | + | chr5.4:12793354-12793373 | MS.gene59406:CDS | 35.0% |
| ! | TTCATGAAGACTTGGTATTC+TGG | - | chr5.4:12790930-12790949 | None:intergenic | 35.0% |
| !! | TTTTTATTTGTATCCGGTGG+TGG | + | chr5.4:12791942-12791961 | MS.gene59406:intron | 35.0% |
| AAAACGTTCCCAAAAAGGCT+AGG | + | chr5.4:12790801-12790820 | MS.gene59406:CDS | 40.0% | |
| ACTGCAAAACGTTCCCAAAA+AGG | + | chr5.4:12790796-12790815 | MS.gene59406:CDS | 40.0% | |
| ATAAGGTGGTGAGATCCATA+TGG | + | chr5.4:12792222-12792241 | MS.gene59406:intron | 40.0% | |
| ATCCAAACCACTTATTGACG+GGG | + | chr5.4:12793412-12793431 | MS.gene59406:CDS | 40.0% | |
| ATCCTGCCATAAAATGAACC+AGG | - | chr5.4:12791065-12791084 | None:intergenic | 40.0% | |
| ATTCCTCTTACAGCCTTCAA+TGG | + | chr5.4:12791114-12791133 | MS.gene59406:CDS | 40.0% | |
| ATTGCATGACGTCCATACAA+AGG | - | chr5.4:12791923-12791942 | None:intergenic | 40.0% | |
| CAGGTCATCAACAAACTCAA+TGG | + | chr5.4:12791807-12791826 | MS.gene59406:intron | 40.0% | |
| CTAAATGATGAAGTGGAAGG+TGG | + | chr5.4:12791011-12791030 | MS.gene59406:CDS | 40.0% | |
| GAACAAGTACTCCACATGAA+TGG | + | chr5.4:12790508-12790527 | MS.gene59406:CDS | 40.0% | |
| GAGACTCGTGATTATGTTCT+TGG | - | chr5.4:12790908-12790927 | None:intergenic | 40.0% | |
| GTCATTCACTATTGATCGTC+TGG | + | chr5.4:12793334-12793353 | MS.gene59406:CDS | 40.0% | |
| TGCACTTAATGACATGGTCT+TGG | + | chr5.4:12792649-12792668 | MS.gene59406:CDS | 40.0% | |
| TGCTGTTGCACTTAATGACA+TGG | + | chr5.4:12792643-12792662 | MS.gene59406:CDS | 40.0% | |
| TTTAGCTGATCGCATGTCTA+AGG | + | chr5.4:12793538-12793557 | MS.gene59406:CDS | 40.0% | |
| ! | AAGGCTAGGTATTGCAGATT+TGG | + | chr5.4:12790815-12790834 | MS.gene59406:CDS | 40.0% |
| ! | ACTTAATGACATGGTCTTGG+AGG | + | chr5.4:12792652-12792671 | MS.gene59406:CDS | 40.0% |
| ! | AGGCTAGGTATTGCAGATTT+GGG | + | chr5.4:12790816-12790835 | MS.gene59406:CDS | 40.0% |
| ! | CACTTTTAGCATACATGTGC+AGG | + | chr5.4:12792015-12792034 | MS.gene59406:intron | 40.0% |
| ! | CATCTATAGTCTTTTTGCCC+TGG | + | chr5.4:12793082-12793101 | MS.gene59406:intron | 40.0% |
| ! | TAACATAGGCTAGTTCTCAG+TGG | - | chr5.4:12792890-12792909 | None:intergenic | 40.0% |
| !! | CAGATTTGGGTTGTTCTTCT+GGG | + | chr5.4:12790829-12790848 | MS.gene59406:CDS | 40.0% |
| !! | CTGCAATACCTAGCCTTTTT+GGG | - | chr5.4:12790812-12790831 | None:intergenic | 40.0% |
| !! | TCTGCAATACCTAGCCTTTT+TGG | - | chr5.4:12790813-12790832 | None:intergenic | 40.0% |
| ATGACGTCCATACAAAGGAG+TGG | - | chr5.4:12791918-12791937 | None:intergenic | 45.0% | |
| CAAGTACTCCACATGAATGG+AGG | + | chr5.4:12790511-12790530 | MS.gene59406:CDS | 45.0% | |
| CCAAAGTGACTGACCAACAA+AGG | - | chr5.4:12793476-12793495 | None:intergenic | 45.0% | |
| CCTTTGTTGGTCAGTCACTT+TGG | + | chr5.4:12793473-12793492 | MS.gene59406:CDS | 45.0% | |
| GAGACATCCACTCCTTTGTA+TGG | + | chr5.4:12791908-12791927 | MS.gene59406:intron | 45.0% | |
| TTGTATGCCCCGTCAATAAG+TGG | - | chr5.4:12793422-12793441 | None:intergenic | 45.0% | |
| ! | AACACAAGGCACCTATCAGA+AGG | - | chr5.4:12791971-12791990 | None:intergenic | 45.0% |
| ! | ATCTTTTTCTATGGGGCTCC+TGG | + | chr5.4:12791044-12791063 | MS.gene59406:CDS | 45.0% |
| ! | CTCCTGGTTCATTTTATGGC+AGG | + | chr5.4:12791060-12791079 | MS.gene59406:CDS | 45.0% |
| ! | TTGGGAACGTTTTGCAGTAG+AGG | - | chr5.4:12790794-12790813 | None:intergenic | 45.0% |
| !! | ATAAGCGTTGAGCACGTTTG+CGG | - | chr5.4:12792477-12792496 | None:intergenic | 45.0% |
| !! | CGTGCAGAAGAACTTGTTGA+CGG | + | chr5.4:12792539-12792558 | MS.gene59406:CDS | 45.0% |
| !! | GCAGATTTGGGTTGTTCTTC+TGG | + | chr5.4:12790828-12790847 | MS.gene59406:CDS | 45.0% |
| !! | GTGCAGAAGAACTTGTTGAC+GGG | + | chr5.4:12792540-12792559 | MS.gene59406:CDS | 45.0% |
| !! | TGCAGAAGAACTTGTTGACG+GGG | + | chr5.4:12792541-12792560 | MS.gene59406:CDS | 45.0% |
| !! | TTATAATTGTTTAAAAAAAT+AGG | - | chr5.4:12792856-12792875 | None:intergenic | 5.0% |
| !!! | AAATAAATTGTTTTTATTTT+TGG | + | chr5.4:12791289-12791308 | MS.gene59406:intron | 5.0% |
| !!! | AATAAATTGTTTTTATTTTT+GGG | + | chr5.4:12791290-12791309 | MS.gene59406:intron | 5.0% |
| CTCCACATGAATGGAGGAAC+TGG | + | chr5.4:12790517-12790536 | MS.gene59406:CDS | 50.0% | |
| CTCCAGTTCCTCCATTCATG+TGG | - | chr5.4:12790522-12790541 | None:intergenic | 50.0% | |
| GAACCTGTGAGAGCCATTGA+AGG | - | chr5.4:12791130-12791149 | None:intergenic | 50.0% | |
| GAGCCATTGAAGGCTGTAAG+AGG | - | chr5.4:12791120-12791139 | None:intergenic | 50.0% | |
| GATGAAGTGGAAGGTGGGAT+TGG | + | chr5.4:12791017-12791036 | MS.gene59406:CDS | 50.0% | |
| GATGGAGATGGTGTGTACTG+AGG | - | chr5.4:12793284-12793303 | None:intergenic | 50.0% | |
| TATCAGAAGGATGCCACCAC+CGG | - | chr5.4:12791958-12791977 | None:intergenic | 50.0% | |
| TGCCCCGTCAATAAGTGGTT+TGG | - | chr5.4:12793417-12793436 | None:intergenic | 50.0% | |
| ! | GGGGCTCCTGGTTCATTTTA+TGG | + | chr5.4:12791056-12791075 | MS.gene59406:CDS | 50.0% |
| !! | GCAGAAGAACTTGTTGACGG+GGG | + | chr5.4:12792542-12792561 | MS.gene59406:CDS | 50.0% |
| !! | TAAGCGTTGAGCACGTTTGC+GGG | - | chr5.4:12792476-12792495 | None:intergenic | 50.0% |
| CAGCCTTCAATGGCTCTCAC+AGG | + | chr5.4:12791124-12791143 | MS.gene59406:CDS | 55.0% | |
| GGCTGCAGCTGAACCTTTGT+TGG | + | chr5.4:12793460-12793479 | MS.gene59406:CDS | 55.0% | |
| ! | ACTTGTTGACGGGGGTCGTA+TGG | + | chr5.4:12792550-12792569 | MS.gene59406:CDS | 55.0% |
| ! | GGTGGTGGCATCCTTCTGAT+AGG | + | chr5.4:12791957-12791976 | MS.gene59406:intron | 55.0% |
| !! | AAGCGTTGAGCACGTTTGCG+GGG | - | chr5.4:12792475-12792494 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12790499 | 12793610 | 12790499 | ID=MS.gene59406 |
| chr5.4 | mRNA | 12790499 | 12793610 | 12790499 | ID=MS.gene59406.t1;Parent=MS.gene59406 |
| chr5.4 | exon | 12790499 | 12790573 | 12790499 | ID=MS.gene59406.t1.exon1;Parent=MS.gene59406.t1 |
| chr5.4 | CDS | 12790499 | 12790573 | 12790499 | ID=cds.MS.gene59406.t1;Parent=MS.gene59406.t1 |
| chr5.4 | exon | 12790741 | 12791145 | 12790741 | ID=MS.gene59406.t1.exon2;Parent=MS.gene59406.t1 |
| chr5.4 | CDS | 12790741 | 12791145 | 12790741 | ID=cds.MS.gene59406.t1;Parent=MS.gene59406.t1 |
| chr5.4 | exon | 12792419 | 12792673 | 12792419 | ID=MS.gene59406.t1.exon3;Parent=MS.gene59406.t1 |
| chr5.4 | CDS | 12792419 | 12792673 | 12792419 | ID=cds.MS.gene59406.t1;Parent=MS.gene59406.t1 |
| chr5.4 | exon | 12793242 | 12793610 | 12793242 | ID=MS.gene59406.t1.exon4;Parent=MS.gene59406.t1 |
| chr5.4 | CDS | 12793242 | 12793610 | 12793242 | ID=cds.MS.gene59406.t1;Parent=MS.gene59406.t1 |
| Gene Sequence |
| Protein sequence |
