AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005988

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005988.t1 MTR_1g095560 97.386 459 12 0 1 459 1 459 0.0 933
MS.gene005988.t1 MTR_1g095560 91.039 491 12 1 1 459 1 491 0.0 918
MS.gene005988.t1 MTR_1g095540 84.498 458 71 0 1 458 1 458 0.0 817
MS.gene005988.t1 MTR_2g062990 54.684 459 203 3 3 457 6 463 0.0 546
MS.gene005988.t1 MTR_2g063000 54.945 455 196 4 8 457 14 464 0.0 535
MS.gene005988.t1 MTR_2g062980 54.113 462 201 5 3 457 6 463 0.0 533
MS.gene005988.t1 MTR_7g013790 55.098 461 192 7 7 457 10 465 0.0 524
MS.gene005988.t1 MTR_2g081620 53.982 452 205 3 8 457 14 464 0.0 524
MS.gene005988.t1 MTR_2g063000 49.890 455 188 5 8 457 14 433 1.59e-163 469
MS.gene005988.t1 MTR_3g034290 49.767 430 206 5 28 456 70 490 3.31e-157 455
MS.gene005988.t1 MTR_3g079560 51.620 432 196 7 28 458 73 492 1.91e-156 452
MS.gene005988.t1 MTR_3g079570 51.732 433 197 6 26 458 72 492 4.55e-156 452
MS.gene005988.t1 MTR_3g079600 52.347 426 189 6 28 450 71 485 7.81e-155 449
MS.gene005988.t1 MTR_4g075150 48.922 464 224 9 1 456 3 461 1.63e-154 447
MS.gene005988.t1 MTR_4g075150 48.712 466 224 9 1 456 3 463 2.70e-154 446
MS.gene005988.t1 MTR_3g079620 50.343 437 196 7 31 458 76 500 1.07e-153 446
MS.gene005988.t1 MTR_3g079590 51.429 420 193 6 31 450 76 484 3.02e-150 437
MS.gene005988.t1 MTR_1g021010 50.688 436 198 8 17 450 60 480 8.41e-149 433
MS.gene005988.t1 MTR_0003s0560 49.420 431 206 7 28 457 69 488 1.90e-148 432
MS.gene005988.t1 MTR_1g020090 49.657 437 198 7 19 450 72 491 2.95e-148 432
MS.gene005988.t1 MTR_3g079630 48.853 436 198 8 26 450 71 492 1.03e-143 421
MS.gene005988.t1 MTR_1g021020 48.046 435 210 6 17 450 62 481 3.08e-142 416
MS.gene005988.t1 MTR_4g089155 47.072 444 219 6 27 458 48 487 4.60e-142 416
MS.gene005988.t1 MTR_4g122950 44.538 476 240 7 5 459 8 480 9.84e-142 415
MS.gene005988.t1 MTR_2g012860 44.538 476 235 7 6 457 4 474 1.06e-141 414
MS.gene005988.t1 MTR_4g122960 45.570 474 236 8 5 459 8 478 8.46e-141 412
MS.gene005988.t1 MTR_2g012850 44.658 468 242 8 3 458 5 467 1.56e-137 404
MS.gene005988.t1 MTR_3g034290 50.287 348 164 4 28 375 70 408 1.95e-126 373
MS.gene005988.t1 MTR_2g449850 42.438 443 231 9 28 458 34 464 3.92e-116 348
MS.gene005988.t1 MTR_3g090130 42.117 463 250 10 6 459 6 459 2.10e-115 347
MS.gene005988.t1 MTR_8g099930 39.871 464 254 11 12 458 9 464 3.84e-115 346
MS.gene005988.t1 MTR_5g072570 40.725 469 258 9 3 459 4 464 1.26e-113 342
MS.gene005988.t1 MTR_3g498755 39.773 440 244 10 31 456 13 445 1.30e-111 337
MS.gene005988.t1 MTR_3g434850 41.290 465 241 12 5 457 11 455 2.71e-111 336
MS.gene005988.t1 MTR_7g021130 40.547 439 238 11 31 456 29 457 9.24e-109 330
MS.gene005988.t1 MTR_3g090150 40.091 439 251 8 30 459 31 466 1.53e-105 322
MS.gene005988.t1 MTR_1g040370 38.568 433 217 9 29 456 27 415 1.01e-100 308
MS.gene005988.t1 MTR_0003s0560 51.311 267 115 6 28 289 69 325 4.55e-88 273
MS.gene005988.t1 MTR_8g011350 34.990 483 254 12 19 450 17 490 1.79e-82 263
MS.gene005988.t1 MTR_7g080180 34.714 507 255 19 5 455 12 498 1.00e-75 245
MS.gene005988.t1 MTR_1g102130 33.556 450 236 13 26 456 85 490 4.52e-73 238
MS.gene005988.t1 MTR_8g011350 34.056 461 244 12 19 428 17 468 1.66e-72 236
MS.gene005988.t1 MTR_7g051430 32.121 495 278 12 5 450 5 490 3.66e-72 236
MS.gene005988.t1 MTR_7g080180 34.783 437 222 17 33 414 28 456 1.58e-62 210
MS.gene005988.t1 MTR_2g018590 29.498 478 296 16 2 455 9 469 1.84e-54 189
MS.gene005988.t1 MTR_2g018600 29.614 466 284 16 15 455 23 469 1.40e-53 186
MS.gene005988.t1 MTR_4g021490 30.562 445 269 14 32 452 39 467 2.24e-53 186
MS.gene005988.t1 MTR_4g021520 30.995 442 271 13 32 452 39 467 2.26e-53 186
MS.gene005988.t1 MTR_4g021535 30.149 471 293 15 4 452 7 463 5.99e-53 184
MS.gene005988.t1 MTR_7g051430 31.265 419 231 11 5 375 5 414 6.81e-53 183
MS.gene005988.t1 MTR_3g100420 30.063 479 295 14 8 455 27 496 7.21e-53 185
MS.gene005988.t1 MTR_4g021510 31.448 442 269 14 32 452 38 466 1.12e-52 184
MS.gene005988.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 4.31e-52 189
MS.gene005988.t1 MTR_4g021500 29.655 435 260 13 45 452 487 902 1.44e-46 173
MS.gene005988.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 5.14e-52 188
MS.gene005988.t1 MTR_4g021500 30.641 421 256 14 45 452 487 884 1.36e-46 173
MS.gene005988.t1 MTR_4g021530 29.614 466 291 16 8 452 18 467 7.66e-51 179
MS.gene005988.t1 MTR_3g045770 28.017 464 298 12 1 447 2 446 1.54e-50 178
MS.gene005988.t1 MTR_2g018630 28.416 461 293 14 13 455 24 465 2.37e-47 169
MS.gene005988.t1 MTR_4g057585 28.941 425 271 13 38 451 87 491 1.61e-44 162
MS.gene005988.t1 MTR_4g021520 31.266 403 244 12 32 414 39 428 2.38e-44 160
MS.gene005988.t1 MTR_2g095730 28.979 421 266 14 47 453 94 495 6.35e-43 158
MS.gene005988.t1 MTR_4g057595 28.505 428 251 13 47 451 97 492 1.83e-42 157
MS.gene005988.t1 MTR_4g084710 29.314 423 255 15 49 455 45 439 2.32e-42 156
MS.gene005988.t1 MTR_2g095750 27.400 427 262 13 47 453 100 498 2.54e-42 157
MS.gene005988.t1 MTR_1g050545 27.934 426 253 14 45 447 81 475 1.33e-41 154
MS.gene005988.t1 MTR_4g057600 27.465 426 262 14 47 453 95 492 1.49e-39 149
MS.gene005988.t1 MTR_1g094155 27.208 419 256 14 49 447 92 481 2.89e-39 148
MS.gene005988.t1 MTR_4g057570 26.682 446 274 12 32 453 74 490 3.08e-39 148
MS.gene005988.t1 MTR_0075s0010 30.789 380 190 16 30 402 5 318 1.63e-38 142
MS.gene005988.t1 MTR_5g097180 27.316 421 266 13 49 455 43 437 1.21e-37 143
MS.gene005988.t1 MTR_2g009200 26.350 463 268 14 19 450 14 434 1.62e-34 134
MS.gene005988.t1 MTR_4g021535 26.752 471 262 17 4 452 7 416 2.32e-34 133
MS.gene005988.t1 MTR_2g095710 27.670 412 242 16 62 453 106 481 4.21e-31 125
MS.gene005988.t1 MTR_2g018630 26.257 358 240 11 112 455 13 360 1.09e-30 122
MS.gene005988.t1 MTR_1g051175 38.053 113 62 4 39 150 18 123 7.89e-16 78.2
MS.gene005988.t1 MTR_4g056520 30.968 155 97 4 41 193 27 173 2.17e-14 75.5
MS.gene005988.t1 MTR_4g122970 37.349 83 42 2 8 82 7 87 3.62e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005988.t1 AT3G07990 76.552 435 102 0 22 456 23 457 0.0 718
MS.gene005988.t1 AT2G35780 70.481 437 123 3 22 456 19 451 0.0 653
MS.gene005988.t1 AT4G30610 55.769 468 193 6 1 458 1 464 0.0 542
MS.gene005988.t1 AT4G30810 58.237 431 175 2 23 450 28 456 0.0 539
MS.gene005988.t1 AT2G24000 55.705 447 185 6 22 458 20 463 0.0 515
MS.gene005988.t1 AT2G24010 55.862 435 187 4 25 458 23 453 0.0 515
MS.gene005988.t1 AT3G02110 54.911 448 182 7 26 458 31 473 5.70e-180 512
MS.gene005988.t1 AT2G24010 53.778 450 188 5 25 458 23 468 1.61e-176 503
MS.gene005988.t1 AT2G35770 54.031 459 202 5 3 458 8 460 1.40e-174 498
MS.gene005988.t1 AT2G24010 51.392 467 182 6 33 458 2 464 1.46e-168 483
MS.gene005988.t1 AT5G23210 50.330 455 196 8 28 457 47 496 1.90e-153 445
MS.gene005988.t1 AT3G63470 49.315 438 202 9 28 459 77 500 3.33e-152 442
MS.gene005988.t1 AT3G17180 49.111 450 210 8 25 458 31 477 1.46e-145 424
MS.gene005988.t1 AT1G61130 47.210 466 233 8 1 458 2 462 2.59e-144 421
MS.gene005988.t1 AT5G08260 44.025 477 236 10 5 457 8 477 2.72e-138 406
MS.gene005988.t1 AT1G11080 47.020 453 219 6 24 458 42 491 6.82e-136 400
MS.gene005988.t1 AT1G11080 47.020 453 219 6 24 458 42 491 8.28e-136 400
MS.gene005988.t1 AT3G52020 46.789 436 217 11 26 456 73 498 3.68e-134 396
MS.gene005988.t1 AT2G24010 53.482 359 147 5 33 375 2 356 4.67e-134 390
MS.gene005988.t1 AT5G23210 49.512 410 177 8 28 412 47 451 1.71e-132 390
MS.gene005988.t1 AT4G15100 43.633 479 244 8 3 458 8 483 1.02e-129 384
MS.gene005988.t1 AT5G23210 48.387 403 181 6 80 457 1 401 1.57e-127 376
MS.gene005988.t1 AT5G23210 48.608 395 176 6 88 457 8 400 3.40e-126 372
MS.gene005988.t1 AT3G17180 46.944 409 199 7 25 418 31 436 3.00e-125 371
MS.gene005988.t1 AT2G05850 41.387 447 245 9 19 458 50 486 6.78e-122 364
MS.gene005988.t1 AT3G52000 43.807 436 229 11 28 459 59 482 9.11e-120 358
MS.gene005988.t1 AT3G52010 41.387 447 242 11 21 459 53 487 7.01e-118 354
MS.gene005988.t1 AT2G33530 43.304 448 233 11 22 456 23 462 6.33e-116 348
MS.gene005988.t1 AT1G43780 41.798 445 238 10 30 459 35 473 9.99e-113 340
MS.gene005988.t1 AT2G12480 40.230 435 250 6 29 457 28 458 1.04e-112 340
MS.gene005988.t1 AT5G42240 40.716 447 241 9 29 459 29 467 7.14e-110 333
MS.gene005988.t1 AT1G28110 40.639 438 239 10 31 456 30 458 2.22e-108 329
MS.gene005988.t1 AT1G28110 40.639 438 239 10 31 456 30 458 2.22e-108 329
MS.gene005988.t1 AT2G24000 41.387 447 186 9 22 458 20 400 7.35e-106 320
MS.gene005988.t1 AT2G12480 38.710 434 234 7 29 457 28 434 2.59e-105 320
MS.gene005988.t1 AT5G23210 47.293 351 158 6 88 413 8 356 2.87e-105 317
MS.gene005988.t1 AT5G42230 38.702 447 250 9 29 459 25 463 4.95e-104 318
MS.gene005988.t1 AT5G42230 38.702 447 250 9 29 459 25 463 4.95e-104 318
MS.gene005988.t1 AT2G12480 38.710 434 232 7 29 457 28 432 5.97e-104 317
MS.gene005988.t1 AT2G12480 38.621 435 232 8 29 457 28 433 3.13e-102 312
MS.gene005988.t1 AT4G12910 34.949 495 268 11 9 455 9 497 8.25e-83 264
MS.gene005988.t1 AT3G25420 34.350 492 267 13 14 455 9 494 3.12e-81 260
MS.gene005988.t1 AT3G56540 62.222 180 64 3 10 189 57 232 2.27e-71 227
MS.gene005988.t1 AT4G12910 33.554 453 248 10 9 414 9 455 5.91e-69 226
MS.gene005988.t1 AT2G22990 32.102 433 262 13 33 455 23 433 3.40e-60 203
MS.gene005988.t1 AT2G22970 32.333 433 259 14 33 455 25 433 1.69e-59 201
MS.gene005988.t1 AT2G22920 31.640 433 264 13 33 455 25 435 1.82e-59 201
MS.gene005988.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.23e-54 187
MS.gene005988.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.87e-54 187
MS.gene005988.t1 AT2G22990 32.187 407 245 12 33 429 23 408 4.08e-54 186
MS.gene005988.t1 AT2G22990 32.108 408 246 12 33 430 23 409 4.99e-54 187
MS.gene005988.t1 AT2G23000 28.868 433 278 12 33 455 25 437 6.87e-54 186
MS.gene005988.t1 AT2G23000 28.868 433 278 12 33 455 25 437 6.87e-54 186
MS.gene005988.t1 AT1G73290 30.505 436 261 12 33 455 32 438 4.41e-53 184
MS.gene005988.t1 AT2G22970 31.579 418 253 13 33 440 25 419 4.87e-53 184
MS.gene005988.t1 AT1G73280 31.207 439 256 14 33 455 33 441 5.74e-53 184
MS.gene005988.t1 AT3G12203 30.407 467 283 15 1 455 1 437 1.26e-52 183
MS.gene005988.t1 AT2G22970 31.863 408 245 13 33 430 25 409 2.29e-52 182
MS.gene005988.t1 AT2G23010 28.761 452 290 13 15 455 7 437 3.96e-52 182
MS.gene005988.t1 AT3G12203 30.947 433 264 13 33 455 9 416 4.35e-52 181
MS.gene005988.t1 AT2G22990 30.485 433 260 14 33 455 23 424 1.29e-51 180
MS.gene005988.t1 AT2G23010 28.540 452 291 13 15 455 7 437 1.75e-51 180
MS.gene005988.t1 AT3G10450 29.930 431 272 10 33 455 29 437 1.81e-51 180
MS.gene005988.t1 AT2G22980 30.324 432 255 15 33 450 26 425 9.98e-51 178
MS.gene005988.t1 AT1G73300 30.137 438 262 14 33 455 33 441 1.92e-50 177
MS.gene005988.t1 AT1G73300 30.137 438 262 14 33 455 33 441 1.92e-50 177
MS.gene005988.t1 AT2G22920 31.378 392 239 10 33 415 25 395 4.81e-50 176
MS.gene005988.t1 AT3G12220 30.415 434 262 12 33 453 27 433 1.62e-49 175
MS.gene005988.t1 AT1G33540 30.425 447 276 14 33 455 29 464 1.09e-48 173
MS.gene005988.t1 AT5G36180 30.137 438 262 14 33 455 33 441 1.09e-48 172
MS.gene005988.t1 AT3G10450 29.540 413 261 10 51 455 4 394 7.89e-48 169
MS.gene005988.t1 AT5G09640 27.686 484 292 13 6 455 6 465 1.08e-47 171
MS.gene005988.t1 AT5G22980 28.673 422 265 13 45 453 96 494 1.19e-47 171
MS.gene005988.t1 AT3G12240 29.062 437 268 15 33 455 28 436 3.19e-47 169
MS.gene005988.t1 AT3G12203 30.693 404 245 13 62 455 1 379 3.72e-47 167
MS.gene005988.t1 AT3G12230 29.195 435 270 13 33 455 27 435 8.07e-47 167
MS.gene005988.t1 AT1G33540 30.303 429 264 14 51 455 4 421 9.92e-47 167
MS.gene005988.t1 AT3G12220 29.808 416 252 12 51 453 15 403 7.15e-46 164
MS.gene005988.t1 AT3G45010 28.140 430 273 11 38 453 92 499 1.11e-45 166
MS.gene005988.t1 AT2G22980 29.384 422 253 14 33 440 26 416 1.91e-45 164
MS.gene005988.t1 AT1G73290 30.633 395 234 10 33 415 32 398 3.32e-45 162
MS.gene005988.t1 AT2G22980 29.854 412 244 14 33 430 26 406 5.31e-45 162
MS.gene005988.t1 AT1G73310 28.704 432 276 12 33 455 33 441 6.16e-45 162
MS.gene005988.t1 AT3G10410 28.571 434 262 15 38 452 90 494 9.62e-45 164
MS.gene005988.t1 AT3G10450 29.557 406 257 9 33 430 29 413 1.72e-44 161
MS.gene005988.t1 AT2G22990 31.065 338 209 10 123 455 1 319 9.74e-42 151
MS.gene005988.t1 AT2G22990 30.769 338 210 10 123 455 1 319 2.77e-41 150
MS.gene005988.t1 AT2G22920 32.686 309 179 9 33 332 25 313 7.53e-41 148
MS.gene005988.t1 AT3G10450 29.124 388 246 9 51 430 4 370 8.49e-41 150
MS.gene005988.t1 AT2G22970 33.010 309 177 10 33 332 25 312 8.03e-40 146
MS.gene005988.t1 AT1G73310 29.032 403 256 10 33 427 33 413 1.28e-39 148
MS.gene005988.t1 AT1G73280 33.829 269 160 7 33 287 33 297 9.18e-39 144
MS.gene005988.t1 AT3G12220 29.206 428 223 14 33 453 27 381 3.97e-38 143
MS.gene005988.t1 AT1G73290 32.959 267 163 6 33 287 32 294 7.53e-38 140
MS.gene005988.t1 AT1G73280 28.732 355 215 11 112 455 12 339 5.71e-35 133
MS.gene005988.t1 AT2G22980 32.090 268 164 7 33 291 26 284 1.26e-33 130
MS.gene005988.t1 AT1G15000 28.337 427 263 13 49 459 37 436 3.91e-33 130
MS.gene005988.t1 AT1G73280 28.739 341 205 11 126 455 1 314 2.90e-32 125
MS.gene005988.t1 AT5G36180 27.966 354 219 11 112 455 12 339 6.59e-31 122
MS.gene005988.t1 AT5G36180 27.966 354 219 11 112 455 12 339 6.59e-31 122
MS.gene005988.t1 AT2G22980 27.760 317 192 11 123 430 1 289 9.08e-27 109
MS.gene005988.t1 AT5G36180 27.356 329 204 10 112 430 12 315 1.94e-25 106
MS.gene005988.t1 AT5G22960 31.188 202 101 5 11 211 10 174 1.12e-24 101
MS.gene005988.t1 AT5G36180 27.089 347 207 11 112 437 12 333 2.43e-24 103
MS.gene005988.t1 AT1G73310 26.646 319 212 7 112 427 12 311 3.60e-23 100
MS.gene005988.t1 AT2G22920 26.838 272 176 8 189 455 3 256 1.12e-22 97.4
MS.gene005988.t1 AT2G27920 24.086 465 295 22 9 439 5 445 4.63e-16 80.5
MS.gene005988.t1 AT2G22960 30.147 136 90 4 321 455 53 184 2.07e-12 66.2

Find 104 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAACTAATGGCCTTAAAT+TGG 0.173728 1.3:+66475270 None:intergenic
TAACAGGGATTCCATATATT+TGG 0.181948 1.3:-66473808 MS.gene005988:CDS
GTGATATTGTTGGGAATTAT+TGG 0.185000 1.3:-66473680 MS.gene005988:CDS
ACTTGTTTACCAGAGAAATA+AGG 0.220874 1.3:-66474421 MS.gene005988:CDS
TGAAATTCCAACACAGAAAA+TGG 0.225573 1.3:+66475456 None:intergenic
GGTTGTTCTTCAATTGCTTA+TGG 0.253357 1.3:-66475229 MS.gene005988:CDS
TGTTCAAATCCAACATTCTT+TGG 0.267824 1.3:+66475376 None:intergenic
CTGCATGTCTTCCAAATATA+TGG 0.277840 1.3:+66473797 None:intergenic
TGAAGCGCCTTCTGCACTTC+TGG 0.279971 1.3:+66473839 None:intergenic
GTTGGATTTGAACAGTATTC+AGG 0.287775 1.3:-66475367 MS.gene005988:CDS
AAACAAAACAATATAGAATA+TGG 0.298366 1.3:+66475483 None:intergenic
TGAACCGTGGACCCAATTTA+AGG 0.299323 1.3:-66475282 MS.gene005988:CDS
CTAAGAATTGCTTGTGACTT+TGG 0.299740 1.3:-66474160 MS.gene005988:CDS
GCGCTTCATGCCAATGTAAC+AGG 0.306670 1.3:-66473824 MS.gene005988:CDS
TATGGTGCTTCTGAAGAAAT+TGG 0.325012 1.3:-66475211 MS.gene005988:CDS
GTCTCCGGGTATGGGTATTC+AGG 0.330012 1.3:-66473605 MS.gene005988:intron
TTTCTGTGTTGGAATTTCAT+TGG 0.334125 1.3:-66475452 MS.gene005988:CDS
AATCCCTTAAAATTGATAAC+TGG 0.337875 1.3:+66474387 None:intergenic
TGTCAATTCCCTTATTTCTC+TGG 0.354954 1.3:+66474412 None:intergenic
CATAGAGAATTCTACATTGC+TGG 0.368294 1.3:-66474604 MS.gene005988:CDS
AACTTATTAACGCTGGTCTC+CGG 0.369243 1.3:-66473620 MS.gene005988:CDS
TTAACGCTGGTCTCCGGGTA+TGG 0.373121 1.3:-66473614 MS.gene005988:CDS
CTTGTTTACCAGAGAAATAA+GGG 0.385746 1.3:-66474420 MS.gene005988:CDS
GGATGGAGTCAAGTTTATAA+AGG 0.388461 1.3:-66472661 MS.gene005988:CDS
GGCGGAGTATAAATGCTATA+TGG 0.395551 1.3:+66474064 None:intergenic
CTGTTCCTTGATTCTCCTGC+TGG 0.401847 1.3:-66475008 MS.gene005988:CDS
CTTGATTCTCCTGCTGGTGT+TGG 0.404698 1.3:-66475002 MS.gene005988:CDS
TGATTTCAGATTCTACATAT+AGG 0.409759 1.3:-66474186 MS.gene005988:CDS
TTCTTGACAGTGATATTGTT+GGG 0.410531 1.3:-66473689 MS.gene005988:intron
TACTCTTCTGTGAAGGTTGG+TGG 0.412687 1.3:-66472682 MS.gene005988:intron
AAAACTAATGGCCTTAAATT+GGG 0.416290 1.3:+66475271 None:intergenic
TTAATAAGTTCATGATATAT+AGG 0.416930 1.3:+66473633 None:intergenic
CCATCATCAATTGGTATCCT+TGG 0.423024 1.3:-66472806 MS.gene005988:CDS
TTATGGCTTAATGGTGGTCC+TGG 0.448568 1.3:-66475250 MS.gene005988:CDS
GATGATGGTTGGTAGCTTCA+AGG 0.449314 1.3:+66472821 None:intergenic
ACAACAGATCTGTACACATT+TGG 0.450890 1.3:-66474960 MS.gene005988:CDS
TTTCTTGACAGTGATATTGT+TGG 0.454235 1.3:-66473690 MS.gene005988:intron
ACGATTATCATGACTATGTT+GGG 0.461685 1.3:-66474237 MS.gene005988:CDS
CCAACATTCTTTGGTTGCCC+TGG 0.461852 1.3:+66475385 None:intergenic
CCATTAAGCCATAAAACTAA+TGG 0.465147 1.3:+66475259 None:intergenic
ACATTTGGTGACCAGAAAAC+AGG 0.468417 1.3:-66474945 MS.gene005988:intron
GACGATTATCATGACTATGT+TGG 0.470565 1.3:-66474238 MS.gene005988:CDS
ATATAGGAAGCATAGACAAT+GGG 0.471053 1.3:+66473649 None:intergenic
CATATATTTGGAAGACATGC+AGG 0.472543 1.3:-66473796 MS.gene005988:intron
CTCACATTGGTAACAATAAG+AGG 0.473526 1.3:-66472637 MS.gene005988:CDS
ATAGAGAATTCTACATTGCT+GGG 0.479532 1.3:-66474603 MS.gene005988:CDS
GCTTCTCATTAGCTTGATGA+TGG 0.483315 1.3:+66472535 None:intergenic
AGCTACCAACCATCATCAAT+TGG 0.485261 1.3:-66472815 MS.gene005988:CDS
ATATGGAATCCCTGTTACAT+TGG 0.488606 1.3:+66473814 None:intergenic
GCCTGAAAACATTGCACTGA+TGG 0.488616 1.3:+66474124 None:intergenic
ACTTATTAACGCTGGTCTCC+GGG 0.492860 1.3:-66473619 MS.gene005988:CDS
TAACGCTGGTCTCCGGGTAT+GGG 0.495844 1.3:-66473613 MS.gene005988:CDS
CAACACCAGCAGGAGAATCA+AGG 0.496627 1.3:+66475003 None:intergenic
GATGGAGTCAAGTTTATAAA+GGG 0.496669 1.3:-66472660 MS.gene005988:CDS
AGGTCATTATGTTCCTCAGT+TGG 0.498140 1.3:-66474448 MS.gene005988:CDS
GATAAGATTAAGCAGTTACC+AGG 0.504649 1.3:-66475403 MS.gene005988:CDS
TGGTATCCTTGGTATGATAG+TGG 0.505825 1.3:-66472795 MS.gene005988:CDS
TTGGTAACAATAAGAGGTGC+TGG 0.519871 1.3:-66472631 MS.gene005988:CDS
GAATATCGAGTTGCGGTCAG+TGG 0.520379 1.3:+66472852 None:intergenic
ATGTTGGGACATTTGAGTAC+TGG 0.520555 1.3:-66474222 MS.gene005988:CDS
TAGATCATTCTTGGAGAACA+AGG 0.525636 1.3:-66472563 MS.gene005988:CDS
CCAGGGCAACCAAAGAATGT+TGG 0.526279 1.3:-66475385 MS.gene005988:CDS
CTTCTGTGAAGGTTGGTGGA+TGG 0.542653 1.3:-66472678 MS.gene005988:intron
CCATCAGACCTAATACGAAA+AGG 0.544605 1.3:+66475187 None:intergenic
ATACACGTCAGAATGCCTTT+CGG 0.549353 1.3:+66473871 None:intergenic
TTGGTGCTACAGGTTGGAAA+TGG 0.551086 1.3:-66474268 MS.gene005988:intron
TCACTCAGAAGCGGCTTGAA+CGG 0.556715 1.3:-66474025 MS.gene005988:CDS
ATTGCTGGGGAAAGTTATGC+AGG 0.557240 1.3:-66474589 MS.gene005988:intron
GGATACCAATTGATGATGGT+TGG 0.557745 1.3:+66472810 None:intergenic
TCAGAATGCCTTTCGGTACA+CGG 0.563005 1.3:+66473878 None:intergenic
CCAAGGATACCAATTGATGA+TGG 0.563122 1.3:+66472806 None:intergenic
AGAGTTGCAGTTGCTGAGCA+AGG 0.568738 1.3:-66474097 MS.gene005988:CDS
CGCTTCATGCCAATGTAACA+GGG 0.570208 1.3:-66473823 MS.gene005988:CDS
TTTGAGTACTGGTGGACACA+TGG 0.597648 1.3:-66474211 MS.gene005988:CDS
AGTGATGCGGTATTGTTACA+AGG 0.603572 1.3:+66474043 None:intergenic
AAATTGGGTCCACGGTTCAG+TGG 0.604072 1.3:+66475286 None:intergenic
CTGTGAATGAACAGAATGGA+AGG 0.605445 1.3:-66475336 MS.gene005988:CDS
TCATATGCTCTAGACATCCA+TGG 0.607409 1.3:+66473902 None:intergenic
CAATCGTCCAGAAGTGCAGA+AGG 0.609778 1.3:-66473846 MS.gene005988:CDS
TATATAGGAAGCATAGACAA+TGG 0.610027 1.3:+66473648 None:intergenic
ATGGCCTTAAATTGGGTCCA+CGG 0.610231 1.3:+66475278 None:intergenic
GCTTCGCGGGGCTTATGAAG+AGG 0.611657 1.3:+66472598 None:intergenic
TATCATGAACTTATTAACGC+TGG 0.615510 1.3:-66473627 MS.gene005988:CDS
GTGACTGTGAATGAACAGAA+TGG 0.619017 1.3:-66475340 MS.gene005988:CDS
CATATGATCCGTGTACCGAA+AGG 0.636629 1.3:-66473886 MS.gene005988:CDS
AAAAGAATAAACGCTTCGCG+GGG 0.640750 1.3:+66472586 None:intergenic
CGTACCTGAATACCCATACC+CGG 0.640864 1.3:+66473601 None:intergenic
ATAAGATTAAGCAGTTACCA+GGG 0.641370 1.3:-66475402 MS.gene005988:CDS
AATTCTCTATGCTTATACTG+AGG 0.645681 1.3:+66474616 None:intergenic
TTGGGACATTTGAGTACTGG+TGG 0.645881 1.3:-66474219 MS.gene005988:CDS
ATCGATAGAATATCGAGTTG+CGG 0.654875 1.3:+66472845 None:intergenic
AGTTTATAAAGGGCTCACAT+TGG 0.657748 1.3:-66472650 MS.gene005988:CDS
AATAAGAGGTGCTGGACACG+AGG 0.657878 1.3:-66472623 MS.gene005988:CDS
TCCTTGGTATGATAGTGGCA+AGG 0.660717 1.3:-66472790 MS.gene005988:intron
ACCTTGCCACTATCATACCA+AGG 0.669971 1.3:+66472789 None:intergenic
TAGAGAATTCTACATTGCTG+GGG 0.672609 1.3:-66474602 MS.gene005988:CDS
TAAGCAATTGAAGAACAACC+AGG 0.684683 1.3:+66475232 None:intergenic
AATACCGCATCACTCAGAAG+CGG 0.685301 1.3:-66474034 MS.gene005988:CDS
ATTGAAGCACCACTGAACCG+TGG 0.692357 1.3:-66475295 MS.gene005988:CDS
TATAGGAAGCATAGACAATG+GGG 0.694959 1.3:+66473650 None:intergenic
CAAGCCGCTTCTGAGTGATG+CGG 0.701434 1.3:+66474030 None:intergenic
TAAACAAGTTGAGCCAACTG+AGG 0.719538 1.3:+66474435 None:intergenic
TGTGAATGAACAGAATGGAA+GGG 0.721865 1.3:-66475335 MS.gene005988:CDS
GATGCGGTATTGTTACAAGG+CGG 0.780235 1.3:+66474046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAACAATATAGAATA+TGG + chr1.3:66472556-66472575 None:intergenic 15.0%
!! TTAATAAGTTCATGATATAT+AGG + chr1.3:66474406-66474425 None:intergenic 15.0%
!!! ACTTTTTTGCTTATATTTAT+CGG - chr1.3:66474485-66474504 MS.gene005988:intron 15.0%
!!! TATCAGAATTTTGATTTAAA+AGG - chr1.3:66474310-66474329 MS.gene005988:intron 15.0%
!!! TTTATGCCTATTTATTATTT+TGG - chr1.3:66472985-66473004 MS.gene005988:intron 15.0%
!! AATAAACACAACAAAAGTAA+TGG + chr1.3:66474680-66474699 None:intergenic 20.0%
!! ATAAACACAACAAAAGTAAT+GGG + chr1.3:66474679-66474698 None:intergenic 20.0%
!! ATATTATGATGTGATTTGAT+TGG + chr1.3:66474988-66475007 None:intergenic 20.0%
!! ATGTATTTGGTATATAGTTA+AGG + chr1.3:66474463-66474482 None:intergenic 20.0%
!! ATTCAATTGATAAGTAAGTA+TGG + chr1.3:66473513-66473532 None:intergenic 20.0%
!! CAACATCCAAAATAATAAAT+AGG + chr1.3:66472994-66473013 None:intergenic 20.0%
!!! AAACCAGTTATCAATTTTAA+GGG - chr1.3:66473646-66473665 MS.gene005988:CDS 20.0%
!!! AAGGAACAAAGATATTTTTT+TGG + chr1.3:66474752-66474771 None:intergenic 20.0%
!!! CATATATTTTTCTTGTAAAG+TGG - chr1.3:66473385-66473404 MS.gene005988:intron 20.0%
!!! TATATATCAGTTTTCTACTT+TGG - chr1.3:66473485-66473504 MS.gene005988:intron 20.0%
!!! TATCAATTTTAAGGGATTTA+TGG - chr1.3:66473654-66473673 MS.gene005988:CDS 20.0%
!!! TATTCTTTTTAGATCATTCT+TGG - chr1.3:66475464-66475483 MS.gene005988:CDS 20.0%
!!! TCTTCTTAACTTTGATATTT+TGG - chr1.3:66475133-66475152 MS.gene005988:intron 20.0%
!!! TGAAAAATTGAATGATTTTC+AGG - chr1.3:66473568-66473587 MS.gene005988:intron 20.0%
!!! TGTTCAAGTTTATACTAATT+TGG - chr1.3:66475300-66475319 MS.gene005988:CDS 20.0%
! AACAAATTAAACACAGTTGA+TGG + chr1.3:66474093-66474112 None:intergenic 25.0%
! AATTTGTACTAGTAACATTC+GGG - chr1.3:66474880-66474899 MS.gene005988:intron 25.0%
! CAATTTGTACTAGTAACATT+CGG - chr1.3:66474879-66474898 MS.gene005988:intron 25.0%
! CTCGTTATATGATTATCATA+AGG + chr1.3:66473732-66473751 None:intergenic 25.0%
! GCATTTAGAGAAATATGAAA+TGG + chr1.3:66474815-66474834 None:intergenic 25.0%
! GTTATATGATTATCATAAGG+TGG + chr1.3:66473729-66473748 None:intergenic 25.0%
! TAGAGAAATATGAAATGGAT+GGG + chr1.3:66474810-66474829 None:intergenic 25.0%
! TATCTCAATAAATATCCACA+TGG - chr1.3:66475033-66475052 MS.gene005988:intron 25.0%
! TCAATAAATCGATAGCATAT+AGG + chr1.3:66474049-66474068 None:intergenic 25.0%
! TCATTGATCTATACAGAATA+TGG + chr1.3:66474928-66474947 None:intergenic 25.0%
! TCTGTATAGATCAATGATTA+TGG - chr1.3:66474931-66474950 MS.gene005988:intron 25.0%
! TCTTATCTGTAATCAAGAAT+TGG - chr1.3:66475107-66475126 MS.gene005988:intron 25.0%
! TGATTTCAGATTCTACATAT+AGG - chr1.3:66473850-66473869 MS.gene005988:CDS 25.0%
! TTAGAGAAATATGAAATGGA+TGG + chr1.3:66474811-66474830 None:intergenic 25.0%
!! AAAACTAATGGCCTTAAATT+GGG + chr1.3:66472768-66472787 None:intergenic 25.0%
!! AATCCCTTAAAATTGATAAC+TGG + chr1.3:66473652-66473671 None:intergenic 25.0%
!! AGCAAAAAAGTACATGTATT+TGG + chr1.3:66474476-66474495 None:intergenic 25.0%
!! CAAACCAGTTATCAATTTTA+AGG - chr1.3:66473645-66473664 MS.gene005988:CDS 25.0%
!! TAAAACTAATGGCCTTAAAT+TGG + chr1.3:66472769-66472788 None:intergenic 25.0%
!! TAAATTTTACTCTTCTGTGA+AGG - chr1.3:66475347-66475366 MS.gene005988:CDS 25.0%
!! TAGTATGTGATATCAACTTT+TGG - chr1.3:66474593-66474612 MS.gene005988:CDS 25.0%
!!! ATTTAAGGCCATTAGTTTTA+TGG - chr1.3:66472769-66472788 MS.gene005988:intron 25.0%
!!! TATGCTATCGATTTATTGAA+TGG - chr1.3:66474050-66474069 MS.gene005988:CDS 25.0%
AAGTGACACTCAAATGATTA+AGG + chr1.3:66474771-66474790 None:intergenic 30.0%
AATGCTCTTTGACATTATTG+AGG - chr1.3:66474830-66474849 MS.gene005988:intron 30.0%
AATTCAACAGAATACATCCA+TGG - chr1.3:66474569-66474588 MS.gene005988:intron 30.0%
AATTCTCTATGCTTATACTG+AGG + chr1.3:66473423-66473442 None:intergenic 30.0%
ACAGAATATGGAGTAATGAA+AGG + chr1.3:66474916-66474935 None:intergenic 30.0%
ACGATTATCATGACTATGTT+GGG - chr1.3:66473799-66473818 MS.gene005988:CDS 30.0%
ACTTGTTTACCAGAGAAATA+AGG - chr1.3:66473615-66473634 MS.gene005988:CDS 30.0%
ATAAGATTAAGCAGTTACCA+GGG - chr1.3:66472634-66472653 MS.gene005988:CDS 30.0%
ATAGAGAATTCTACATTGCT+GGG - chr1.3:66473433-66473452 MS.gene005988:intron 30.0%
CCATTAAGCCATAAAACTAA+TGG + chr1.3:66472780-66472799 None:intergenic 30.0%
CTTGTTTACCAGAGAAATAA+GGG - chr1.3:66473616-66473635 MS.gene005988:CDS 30.0%
GAGTTTGATTATTCTGTGAT+TGG - chr1.3:66473749-66473768 MS.gene005988:intron 30.0%
GATGGAGTCAAGTTTATAAA+GGG - chr1.3:66475376-66475395 MS.gene005988:CDS 30.0%
GGATTTATGGTAAGATTGTT+AGG - chr1.3:66473667-66473686 MS.gene005988:CDS 30.0%
GTGATATTGTTGGGAATTAT+TGG - chr1.3:66474356-66474375 MS.gene005988:intron 30.0%
TAAAAAGAATAAACGCTTCG+CGG + chr1.3:66475455-66475474 None:intergenic 30.0%
TAACAGGGATTCCATATATT+TGG - chr1.3:66474228-66474247 MS.gene005988:CDS 30.0%
TATCATGAACTTATTAACGC+TGG - chr1.3:66474409-66474428 MS.gene005988:CDS 30.0%
TCTTATAAAACAAACAGCCA+TGG - chr1.3:66474117-66474136 MS.gene005988:CDS 30.0%
TGAAATTCCAACACAGAAAA+TGG + chr1.3:66472583-66472602 None:intergenic 30.0%
TGTTCAAATCCAACATTCTT+TGG + chr1.3:66472663-66472682 None:intergenic 30.0%
TTCTTGACAGTGATATTGTT+GGG - chr1.3:66474347-66474366 MS.gene005988:intron 30.0%
TTGATAAAGCAAAACAAAGC+TGG + chr1.3:66473296-66473315 None:intergenic 30.0%
TTGATATCACATACTATCCA+TGG + chr1.3:66474589-66474608 None:intergenic 30.0%
TTTCTGTGTTGGAATTTCAT+TGG - chr1.3:66472584-66472603 MS.gene005988:CDS 30.0%
TTTCTTGACAGTGATATTGT+TGG - chr1.3:66474346-66474365 MS.gene005988:intron 30.0%
! AAATTGGTCCTTTTCGTATT+AGG - chr1.3:66472841-66472860 MS.gene005988:CDS 30.0%
! ATATAGGAAGCATAGACAAT+GGG + chr1.3:66474390-66474409 None:intergenic 30.0%
! TATATAGGAAGCATAGACAA+TGG + chr1.3:66474391-66474410 None:intergenic 30.0%
! TTTTCTTGAATCGTTATGCT+TGG - chr1.3:66472880-66472899 MS.gene005988:intron 30.0%
!!! CCATTAGTTTTATGGCTTAA+TGG - chr1.3:66472777-66472796 MS.gene005988:intron 30.0%
!!! TATTATTTTGGATGTTGCAG+TGG - chr1.3:66472997-66473016 MS.gene005988:intron 30.0%
!!! TTAGTTTTATGGCTTAATGG+TGG - chr1.3:66472780-66472799 MS.gene005988:intron 30.0%
AAAAAGAATAAACGCTTCGC+GGG + chr1.3:66475454-66475473 None:intergenic 35.0%
ACAACAGATCTGTACACATT+TGG - chr1.3:66473076-66473095 MS.gene005988:intron 35.0%
AGTTTATAAAGGGCTCACAT+TGG - chr1.3:66475386-66475405 MS.gene005988:CDS 35.0%
ATATGGAATCCCTGTTACAT+TGG + chr1.3:66474225-66474244 None:intergenic 35.0%
ATGTTGAACACGTTCTATTG+AGG - chr1.3:66474280-66474299 MS.gene005988:intron 35.0%
CAAAGACTGAATCTCAGAAT+CGG + chr1.3:66472919-66472938 None:intergenic 35.0%
CATAGAGAATTCTACATTGC+TGG - chr1.3:66473432-66473451 MS.gene005988:intron 35.0%
CATATATTTGGAAGACATGC+AGG - chr1.3:66474240-66474259 MS.gene005988:CDS 35.0%
CTAAGAATTGCTTGTGACTT+TGG - chr1.3:66473876-66473895 MS.gene005988:CDS 35.0%
CTGCATGTCTTCCAAATATA+TGG + chr1.3:66474242-66474261 None:intergenic 35.0%
GACGATTATCATGACTATGT+TGG - chr1.3:66473798-66473817 MS.gene005988:CDS 35.0%
GATAAGATTAAGCAGTTACC+AGG - chr1.3:66472633-66472652 MS.gene005988:CDS 35.0%
GGATGGAGTCAAGTTTATAA+AGG - chr1.3:66475375-66475394 MS.gene005988:CDS 35.0%
GGTTGTTCTTCAATTGCTTA+TGG - chr1.3:66472807-66472826 MS.gene005988:CDS 35.0%
GTTGGATTTGAACAGTATTC+AGG - chr1.3:66472669-66472688 MS.gene005988:CDS 35.0%
TAAGCAATTGAAGAACAACC+AGG + chr1.3:66472807-66472826 None:intergenic 35.0%
TAGAGAATTCTACATTGCTG+GGG - chr1.3:66473434-66473453 MS.gene005988:intron 35.0%
TAGATCATTCTTGGAGAACA+AGG - chr1.3:66475473-66475492 MS.gene005988:CDS 35.0%
TGTAATGATCATGCTCATGA+AGG - chr1.3:66473256-66473275 MS.gene005988:intron 35.0%
TGTGAATGAACAGAATGGAA+GGG - chr1.3:66472701-66472720 MS.gene005988:intron 35.0%
! ATCGATAGAATATCGAGTTG+CGG + chr1.3:66475194-66475213 None:intergenic 35.0%
! CTCACATTGGTAACAATAAG+AGG - chr1.3:66475399-66475418 MS.gene005988:CDS 35.0%
! TACATTACCTACCTGTTTTC+TGG + chr1.3:66473105-66473124 None:intergenic 35.0%
! TATAGGAAGCATAGACAATG+GGG + chr1.3:66474389-66474408 None:intergenic 35.0%
! TATGGTGCTTCTGAAGAAAT+TGG - chr1.3:66472825-66472844 MS.gene005988:CDS 35.0%
! TGTCAATTCCCTTATTTCTC+TGG + chr1.3:66473627-66473646 None:intergenic 35.0%
! TTTGTGTCCATTTTCTGTGT+TGG - chr1.3:66472573-66472592 MS.gene005988:CDS 35.0%
! TTTTACTCTTCTGTGAAGGT+TGG - chr1.3:66475351-66475370 MS.gene005988:CDS 35.0%
AAAAGAATAAACGCTTCGCG+GGG + chr1.3:66475453-66475472 None:intergenic 40.0%
AGCTACCAACCATCATCAAT+TGG - chr1.3:66475221-66475240 MS.gene005988:CDS 40.0%
AGGTCATTATGTTCCTCAGT+TGG - chr1.3:66473588-66473607 MS.gene005988:intron 40.0%
AGTGATGCGGTATTGTTACA+AGG + chr1.3:66473996-66474015 None:intergenic 40.0%
ATACACGTCAGAATGCCTTT+CGG + chr1.3:66474168-66474187 None:intergenic 40.0%
ATGTTGGGACATTTGAGTAC+TGG - chr1.3:66473814-66473833 MS.gene005988:CDS 40.0%
CCAAGGATACCAATTGATGA+TGG + chr1.3:66475233-66475252 None:intergenic 40.0%
CCATCAGACCTAATACGAAA+AGG + chr1.3:66472852-66472871 None:intergenic 40.0%
CCATCATCAATTGGTATCCT+TGG - chr1.3:66475230-66475249 MS.gene005988:CDS 40.0%
CGTTAGTGACACATTGACAT+TGG - chr1.3:66473162-66473181 MS.gene005988:intron 40.0%
CTGTGAATGAACAGAATGGA+AGG - chr1.3:66472700-66472719 MS.gene005988:intron 40.0%
GCTCATGAAGGATTTACTCA+TGG - chr1.3:66473268-66473287 MS.gene005988:intron 40.0%
GGCGGAGTATAAATGCTATA+TGG + chr1.3:66473975-66473994 None:intergenic 40.0%
GTGACTGTGAATGAACAGAA+TGG - chr1.3:66472696-66472715 MS.gene005988:intron 40.0%
TAAGAAAAACCAACACCAGC+AGG + chr1.3:66473046-66473065 None:intergenic 40.0%
TGGTATCCTTGGTATGATAG+TGG - chr1.3:66475241-66475260 MS.gene005988:CDS 40.0%
TTGACATTATTGAGGCTCAC+TGG - chr1.3:66474838-66474857 MS.gene005988:intron 40.0%
! AACTTATTAACGCTGGTCTC+CGG - chr1.3:66474416-66474435 MS.gene005988:CDS 40.0%
! ACATTTGGTGACCAGAAAAC+AGG - chr1.3:66473091-66473110 MS.gene005988:intron 40.0%
! CCTTTTCGTATTAGGTCTGA+TGG - chr1.3:66472849-66472868 MS.gene005988:CDS 40.0%
! TAAACAAGTTGAGCCAACTG+AGG + chr1.3:66473604-66473623 None:intergenic 40.0%
! TCATATGCTCTAGACATCCA+TGG + chr1.3:66474137-66474156 None:intergenic 40.0%
! TCCATCAGTGCAATGTTTTC+AGG - chr1.3:66473911-66473930 MS.gene005988:intron 40.0%
! TTGAGTTTTACCACGTGTGT+CGG - chr1.3:66473209-66473228 MS.gene005988:intron 40.0%
! TTGGTAACAATAAGAGGTGC+TGG - chr1.3:66475405-66475424 MS.gene005988:CDS 40.0%
!! GGATACCAATTGATGATGGT+TGG + chr1.3:66475229-66475248 None:intergenic 40.0%
!! TATTCTGTGATTGGTGCTAC+AGG - chr1.3:66473758-66473777 MS.gene005988:intron 40.0%
!!! CTTTGATATTTTGGCTGCAG+TGG - chr1.3:66475142-66475161 MS.gene005988:intron 40.0%
AATACCGCATCACTCAGAAG+CGG - chr1.3:66474002-66474021 MS.gene005988:intron 45.0%
ACCTTGCCACTATCATACCA+AGG + chr1.3:66475250-66475269 None:intergenic 45.0%
ATTGCTGGGGAAAGTTATGC+AGG - chr1.3:66473447-66473466 MS.gene005988:intron 45.0%
CATATGATCCGTGTACCGAA+AGG - chr1.3:66474150-66474169 MS.gene005988:CDS 45.0%
CGCTTCATGCCAATGTAACA+GGG - chr1.3:66474213-66474232 MS.gene005988:CDS 45.0%
GATGCGGTATTGTTACAAGG+CGG + chr1.3:66473993-66474012 None:intergenic 45.0%
GCCTGAAAACATTGCACTGA+TGG + chr1.3:66473915-66473934 None:intergenic 45.0%
GTTTCTTGACTTTGCAGCTG+AGG - chr1.3:66473359-66473378 MS.gene005988:intron 45.0%
TACTCTTCTGTGAAGGTTGG+TGG - chr1.3:66475354-66475373 MS.gene005988:CDS 45.0%
TCAGAATGCCTTTCGGTACA+CGG + chr1.3:66474161-66474180 None:intergenic 45.0%
TGAACCGTGGACCCAATTTA+AGG - chr1.3:66472754-66472773 MS.gene005988:intron 45.0%
TTATGGCTTAATGGTGGTCC+TGG - chr1.3:66472786-66472805 MS.gene005988:intron 45.0%
! ACTTATTAACGCTGGTCTCC+GGG - chr1.3:66474417-66474436 MS.gene005988:CDS 45.0%
! ATGGCCTTAAATTGGGTCCA+CGG + chr1.3:66472761-66472780 None:intergenic 45.0%
! CAATGTGTCACTAACGTGTC+CGG + chr1.3:66473158-66473177 None:intergenic 45.0%
! TTGGTGACCAGAAAACAGGT+AGG - chr1.3:66473095-66473114 MS.gene005988:intron 45.0%
!! GATGATGGTTGGTAGCTTCA+AGG + chr1.3:66475218-66475237 None:intergenic 45.0%
!! TCCTTGGTATGATAGTGGCA+AGG - chr1.3:66475246-66475265 MS.gene005988:CDS 45.0%
!! TTGGGACATTTGAGTACTGG+TGG - chr1.3:66473817-66473836 MS.gene005988:CDS 45.0%
!! TTGGTGCTACAGGTTGGAAA+TGG - chr1.3:66473768-66473787 MS.gene005988:intron 45.0%
!! TTTGAGTACTGGTGGACACA+TGG - chr1.3:66473825-66473844 MS.gene005988:CDS 45.0%
!!! ATGGAAGGGCACTGTTTTAC+TGG - chr1.3:66472715-66472734 MS.gene005988:intron 45.0%
AAATTGGGTCCACGGTTCAG+TGG + chr1.3:66472753-66472772 None:intergenic 50.0%
AGAGTTGCAGTTGCTGAGCA+AGG - chr1.3:66473939-66473958 MS.gene005988:intron 50.0%
CAACACCAGCAGGAGAATCA+AGG + chr1.3:66473036-66473055 None:intergenic 50.0%
CCAACATTCTTTGGTTGCCC+TGG + chr1.3:66472654-66472673 None:intergenic 50.0%
CCAGGGCAACCAAAGAATGT+TGG - chr1.3:66472651-66472670 MS.gene005988:CDS 50.0%
CGTACCTGAATACCCATACC+CGG + chr1.3:66474438-66474457 None:intergenic 50.0%
CTGTTCCTTGATTCTCCTGC+TGG - chr1.3:66473028-66473047 MS.gene005988:intron 50.0%
CTTGATTCTCCTGCTGGTGT+TGG - chr1.3:66473034-66473053 MS.gene005988:intron 50.0%
GCGCTTCATGCCAATGTAAC+AGG - chr1.3:66474212-66474231 MS.gene005988:CDS 50.0%
TCACTCAGAAGCGGCTTGAA+CGG - chr1.3:66474011-66474030 MS.gene005988:intron 50.0%
TCCAATCACAGTTCGCCATG+TGG + chr1.3:66475051-66475070 None:intergenic 50.0%
TCCACATGGCGAACTGTGAT+TGG - chr1.3:66475047-66475066 MS.gene005988:intron 50.0%
! ATTGAAGCACCACTGAACCG+TGG - chr1.3:66472741-66472760 MS.gene005988:intron 50.0%
! CAATCGTCCAGAAGTGCAGA+AGG - chr1.3:66474190-66474209 MS.gene005988:CDS 50.0%
! GAATATCGAGTTGCGGTCAG+TGG + chr1.3:66475187-66475206 None:intergenic 50.0%
!! AATAAGAGGTGCTGGACACG+AGG - chr1.3:66475413-66475432 MS.gene005988:CDS 50.0%
!! CTGTGATTGGTGCTACAGGT+TGG - chr1.3:66473762-66473781 MS.gene005988:intron 50.0%
!! CTTCTGTGAAGGTTGGTGGA+TGG - chr1.3:66475358-66475377 MS.gene005988:CDS 50.0%
CAAGCCGCTTCTGAGTGATG+CGG + chr1.3:66474009-66474028 None:intergenic 55.0%
GTCACTAACGTGTCCGGTGT+TGG + chr1.3:66473152-66473171 None:intergenic 55.0%
GTCTCCGGGTATGGGTATTC+AGG - chr1.3:66474431-66474450 MS.gene005988:CDS 55.0%
TGAAACACCGCCACCAACAC+CGG - chr1.3:66473136-66473155 MS.gene005988:intron 55.0%
! ACTAACGTGTCCGGTGTTGG+TGG + chr1.3:66473149-66473168 None:intergenic 55.0%
! GTTTCGTGTCGGTGGTGCAT+AGG - chr1.3:66473231-66473250 MS.gene005988:intron 55.0%
! TAACGCTGGTCTCCGGGTAT+GGG - chr1.3:66474423-66474442 MS.gene005988:CDS 55.0%
! TGAAGCGCCTTCTGCACTTC+TGG + chr1.3:66474200-66474219 None:intergenic 55.0%
! TTAACGCTGGTCTCCGGGTA+TGG - chr1.3:66474422-66474441 MS.gene005988:CDS 55.0%
!! CACGTGTGTCGGTTTCGTGT+CGG - chr1.3:66473220-66473239 MS.gene005988:intron 55.0%
CGACACGAAACCGACACACG+TGG + chr1.3:66473222-66473241 None:intergenic 60.0%
GCTTCGCGGGGCTTATGAAG+AGG + chr1.3:66475441-66475460 None:intergenic 60.0%
!! AACGTGTCCGGTGTTGGTGG+CGG + chr1.3:66473146-66473165 None:intergenic 60.0%
!! GTGTGTCGGTTTCGTGTCGG+TGG - chr1.3:66473223-66473242 MS.gene005988:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 66472543 66475515 66472543 ID=MS.gene005988
chr1.3 mRNA 66472543 66475515 66472543 ID=MS.gene005988.t1;Parent=MS.gene005988
chr1.3 exon 66475149 66475515 66475149 ID=MS.gene005988.t1.exon1;Parent=MS.gene005988.t1
chr1.3 CDS 66475149 66475515 66475149 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66474946 66475041 66474946 ID=MS.gene005988.t1.exon2;Parent=MS.gene005988.t1
chr1.3 CDS 66474946 66475041 66474946 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66474590 66474682 66474590 ID=MS.gene005988.t1.exon3;Parent=MS.gene005988.t1
chr1.3 CDS 66474590 66474682 66474590 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66474383 66474468 66474383 ID=MS.gene005988.t1.exon4;Parent=MS.gene005988.t1
chr1.3 CDS 66474383 66474468 66474383 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66474018 66474278 66474018 ID=MS.gene005988.t1.exon5;Parent=MS.gene005988.t1
chr1.3 CDS 66474018 66474278 66474018 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66473797 66473924 66473797 ID=MS.gene005988.t1.exon6;Parent=MS.gene005988.t1
chr1.3 CDS 66473797 66473924 66473797 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66473606 66473701 66473606 ID=MS.gene005988.t1.exon7;Parent=MS.gene005988.t1
chr1.3 CDS 66473606 66473701 66473606 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66472791 66472896 66472791 ID=MS.gene005988.t1.exon8;Parent=MS.gene005988.t1
chr1.3 CDS 66472791 66472896 66472791 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
chr1.3 exon 66472543 66472689 66472543 ID=MS.gene005988.t1.exon9;Parent=MS.gene005988.t1
chr1.3 CDS 66472543 66472689 66472543 ID=cds.MS.gene005988.t1;Parent=MS.gene005988.t1
Gene Sequence

>MS.gene005988

ATGGGTTATTCCATATTCTATATTGTTTTGTTTGTGTCCATTTTCTGTGTTGGAATTTCATTGGCTTCTTCTATAGAAGATCAAAAGAGAGATAAGATTAAGCAGTTACCAGGGCAACCAAAGAATGTTGGATTTGAACAGTATTCAGGCTATGTGACTGTGAATGAACAGAATGGAAGGGCACTGTTTTACTGGTTAATTGAAGCACCACTGAACCGTGGACCCAATTTAAGGCCATTAGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCAATTGCTTATGGTGCTTCTGAAGAAATTGGTCCTTTTCGTATTAGGTCTGATGGCAAATCACTTTTCTTGAATCGTTATGCTTGGAACAATTGTAAGTCCGATTCTGAGATTCAGTCTTTGTTGCTTCGATTCGTACATAATTTTTTTTCTTCAATTTTTGACGATATTTATGCCTATTTATTATTTTGGATGTTGCAGTGGCAAATATACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCTTATTGTAATAAAACAACAGATCTGTACACATTTGGTGACCAGAAAACAGGTAGGTAATGTAGTTTGTAACTATGAAACACCGCCACCAACACCGGACACGTTAGTGACACATTGACATTGGTAACAATTTGAGAGAATAGAATAATTGAGTTTTACCACGTGTGTCGGTTTCGTGTCGGTGGTGCATAGGTTTGTAATGATCATGCTCATGAAGGATTTACTCATGGTGCCAGCTTTGTTTTGCTTTATCAAAGAGATTTGACACGTTAATAACTTTATTGCATATGAGATCTGAGTTTCTTGACTTTGCAGCTGAGGATGCATATATTTTTCTTGTAAAGTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTGAATCAAAATCTGATATATATCAGTTTTCTACTTTGGTGCCATACTTACTTATCAATTGAATGAATGCTTTGTACAATGAAGAATTATTCAATTTCTTGAAAAATTGAATGATTTTCAGGTCATTATGTTCCTCAGTTGGCTCAACTTGTTTACCAGAGAAATAAGGGAATTGACAAACCAGTTATCAATTTTAAGGGATTTATGGTAAGATTGTTAGGTTCATGTTTACATAATCACAATTCAATGCAACACGACCACCTTATGATAATCATATAACGAGTTTGATTATTCTGTGATTGGTGCTACAGGTTGGAAATGGTGTGACTGACGATTATCATGACTATGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACATATAGGATTCTAAGAATTGCTTGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTTTTCAGGCTCTTAGAGTTGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACTCCGCCTTGTAACAATACCGCATCACTCAGAAGCGGCTTGAACGGTCGTTATGTAAGCCTATATGCTATCGATTTATTGAATGGTTTATCAATTGTGAATGCCATCAACTGTGTTTAATTTGTTTTGATCTTATAAAACAAACAGCCATGGATGTCTAGAGCATATGATCCGTGTACCGAAAGGCATTCTGACGTGTATTTCAATCGTCCAGAAGTGCAGAAGGCGCTTCATGCCAATGTAACAGGGATTCCATATATTTGGAAGACATGCAGGTATATTATTTTCAATTAATGTTGAACACGTTCTATTGAGGTCTATTCTATCAGAATTTTGATTTAAAAGGTTTCTTATTTTCATTTCTTGACAGTGATATTGTTGGGAATTATTGGACTGATTCCCCATTGTCTATGCTTCCTATATATCATGAACTTATTAACGCTGGTCTCCGGGTATGGGTATTCAGGTACGAACCTTAACTATATACCAAATACATGTACTTTTTTGCTTATATTTATCGGAAGAAGCGAAAATTCACATAAAATGATAAAGAAAGATATATATCTCAACACTTATGAACATAATTCAACAGAATACATCCATGGATAGTATGTGATATCAACTTTTGGTAGATTGACATGTCTTACATTATCTTCTAATGTATTTTGCTTACTTTAATAGCGTCAAATCCCATTACTTTTGTTGTGTTTATTCTTTAATTCTTGAATAGTAGATTTTTATTTCAGCTTTTCAAGCACAGTGCCAAAAAAATATCTTTGTTCCTTAATCATTTGAGTGTCACTTATCACGTTTTAACAATCCCATCCATTTCATATTTCTCTAAATGCTCTTTGACATTATTGAGGCTCACTGGCTCAGCATAATTGCACTTCAATTTGTACTAGTAACATTCGGGCTTAGTTGTTCCTTTCATTACTCCATATTCTGTATAGATCAATGATTATGGACTGACAACATAATTTATGTTAGACATACATCCAATCAAATCACATCATAATATCACTTTATCATGTTAGTTTCTAAATTATCTCAATAAATATCCACATGGCGAACTGTGATTGGATACATGTGTATTTTTTTTTTACACATGCAAATTAAATCTTATCTGTAATCAAGAATTGGAACTCTTCTTAACTTTGATATTTTGGCTGCAGTGGAGACACTGATTCTGTAGTTCCACTGACCGCAACTCGATATTCTATCGATGCCTTGAAGCTACCAACCATCATCAATTGGTATCCTTGGTATGATAGTGGCAAGGTTAGTGCTAATTAACTTCTATAAGTAAAAACTGTTCAAGTTTATACTAATTTGGTATGAATAGCAGCAAGTTTGATACTAAATTTTACTCTTCTGTGAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGGCTCACATTGGTAACAATAAGAGGTGCTGGACACGAGGTTCCTCTTCATAAGCCCCGCGAAGCGTTTATTCTTTTTAGATCATTCTTGGAGAACAAGGACATGCCATCATCAAGCTAA
Protein sequence

>MS.gene005988.t1

MGYSIFYIVLFVSIFCVGISLASSIEDQKRDKIKQLPGQPKNVGFEQYSGYVTVNEQNGRALFYWLIEAPLNRGPNLRPLVLWLNGGPGCSSIAYGASEEIGPFRIRSDGKSLFLNRYAWNNLANILFLDSPAGVGFSYCNKTTDLYTFGDQKTAEDAYIFLVKWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYQRNKGIDKPVINFKGFMVGNGVTDDYHDYVGTFEYWWTHGLISDSTYRILRIACDFGSSQHPSVQCFQALRVAVAEQGNIDPYSIYTPPCNNTASLRSGLNGRYPWMSRAYDPCTERHSDVYFNRPEVQKALHANVTGIPYIWKTCSDIVGNYWTDSPLSMLPIYHELINAGLRVWVFSGDTDSVVPLTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTLVTIRGAGHEVPLHKPREAFILFRSFLENKDMPSSS