AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061233


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061233.t1 MTR_4g122950 94.387 481 22 3 1 479 1 478 0.0 937
MS.gene061233.t1 MTR_4g122960 86.486 481 58 4 1 479 1 476 0.0 845
MS.gene061233.t1 MTR_4g089155 52.318 453 201 8 33 481 47 488 5.65e-168 483
MS.gene061233.t1 MTR_2g012860 48.548 482 228 7 6 481 9 476 1.10e-165 476
MS.gene061233.t1 MTR_2g012850 51.116 448 202 7 38 481 34 468 5.79e-164 472
MS.gene061233.t1 MTR_4g075150 50.993 453 204 8 30 478 25 463 1.67e-159 460
MS.gene061233.t1 MTR_4g075150 50.552 453 204 8 30 478 25 461 1.28e-158 458
MS.gene061233.t1 MTR_7g013790 46.502 486 228 8 2 480 6 466 1.06e-149 436
MS.gene061233.t1 MTR_2g062990 47.333 450 216 8 36 482 35 466 1.89e-142 417
MS.gene061233.t1 MTR_2g063000 43.595 484 244 7 3 482 9 467 1.62e-141 415
MS.gene061233.t1 MTR_1g095560 45.032 473 236 7 10 479 6 457 4.79e-140 410
MS.gene061233.t1 MTR_1g095540 44.191 482 241 6 1 479 1 457 3.38e-139 408
MS.gene061233.t1 MTR_2g062980 45.556 450 224 7 36 482 35 466 5.53e-139 408
MS.gene061233.t1 MTR_3g079620 46.681 452 205 7 37 479 75 499 7.28e-138 406
MS.gene061233.t1 MTR_3g079590 47.865 445 205 6 38 482 76 493 9.69e-138 406
MS.gene061233.t1 MTR_3g079560 46.652 448 211 7 33 479 71 491 1.55e-137 405
MS.gene061233.t1 MTR_2g081620 45.111 450 226 7 36 482 36 467 1.22e-136 402
MS.gene061233.t1 MTR_1g020090 44.494 445 216 4 36 480 86 499 8.63e-136 401
MS.gene061233.t1 MTR_3g079600 46.696 454 211 7 33 482 69 495 1.55e-135 400
MS.gene061233.t1 MTR_1g021020 43.640 456 222 4 29 481 67 490 1.29e-134 398
MS.gene061233.t1 MTR_3g079570 46.966 445 208 7 38 482 77 493 3.14e-134 397
MS.gene061233.t1 MTR_1g021010 44.273 454 223 5 29 481 65 489 3.25e-134 397
MS.gene061233.t1 MTR_1g095560 41.980 505 237 8 10 479 6 489 5.18e-134 396
MS.gene061233.t1 MTR_3g034290 45.011 451 221 8 33 481 68 493 1.58e-133 395
MS.gene061233.t1 MTR_0003s0560 45.556 450 218 7 33 481 67 490 6.33e-133 394
MS.gene061233.t1 MTR_3g079630 45.952 457 207 9 37 482 75 502 1.72e-128 382
MS.gene061233.t1 MTR_2g063000 39.627 482 235 7 3 482 9 436 3.67e-121 362
MS.gene061233.t1 MTR_5g072570 38.571 490 255 13 10 482 6 466 3.25e-106 324
MS.gene061233.t1 MTR_3g090130 38.144 485 258 13 13 482 4 461 1.47e-105 322
MS.gene061233.t1 MTR_3g090150 38.509 483 262 11 14 482 7 468 2.56e-105 322
MS.gene061233.t1 MTR_3g498755 39.046 461 243 12 35 480 10 447 2.64e-103 316
MS.gene061233.t1 MTR_3g034290 44.262 366 178 7 33 397 68 408 9.51e-103 313
MS.gene061233.t1 MTR_3g434850 39.565 460 233 15 36 480 27 456 1.23e-100 310
MS.gene061233.t1 MTR_8g099930 40.215 465 238 13 29 478 23 462 1.85e-99 306
MS.gene061233.t1 MTR_7g021130 37.372 487 259 13 8 478 1 457 6.21e-99 305
MS.gene061233.t1 MTR_2g449850 36.947 452 254 8 36 479 35 463 3.70e-98 303
MS.gene061233.t1 MTR_0003s0560 51.685 267 126 2 33 299 67 330 3.81e-92 284
MS.gene061233.t1 MTR_1g040370 35.111 450 228 8 34 478 25 415 1.83e-91 285
MS.gene061233.t1 MTR_8g011350 31.590 497 294 13 12 474 8 492 9.33e-80 256
MS.gene061233.t1 MTR_7g080180 33.077 520 283 17 1 477 1 498 8.46e-79 254
MS.gene061233.t1 MTR_7g051430 32.766 470 274 13 40 474 30 492 2.60e-78 253
MS.gene061233.t1 MTR_8g011350 30.444 473 283 13 12 450 8 468 7.83e-70 230
MS.gene061233.t1 MTR_7g080180 32.218 478 260 16 1 436 1 456 1.04e-67 224
MS.gene061233.t1 MTR_1g102130 29.697 495 277 13 2 478 49 490 1.53e-62 211
MS.gene061233.t1 MTR_7g051430 31.633 392 227 12 40 397 30 414 4.61e-59 200
MS.gene061233.t1 MTR_4g021535 30.193 467 289 16 6 461 10 450 5.63e-56 193
MS.gene061233.t1 MTR_3g100420 28.657 499 308 15 3 477 22 496 5.16e-55 191
MS.gene061233.t1 MTR_2g018590 29.399 449 288 14 43 477 36 469 3.39e-54 189
MS.gene061233.t1 MTR_2g018600 28.319 452 288 14 43 477 37 469 1.04e-53 187
MS.gene061233.t1 MTR_4g021490 28.475 446 290 14 39 473 39 466 1.17e-53 187
MS.gene061233.t1 MTR_4g021520 28.764 445 290 12 39 473 39 466 1.17e-52 184
MS.gene061233.t1 MTR_4g021500 30.248 443 274 15 39 467 39 460 1.81e-52 190
MS.gene061233.t1 MTR_4g021500 26.437 435 271 14 51 473 486 883 5.66e-41 157
MS.gene061233.t1 MTR_4g021500 30.248 443 274 15 39 467 39 460 2.76e-52 190
MS.gene061233.t1 MTR_4g021500 27.356 435 285 15 51 473 486 901 6.82e-43 162
MS.gene061233.t1 MTR_2g018630 28.959 442 283 13 43 473 40 461 1.74e-51 181
MS.gene061233.t1 MTR_4g021510 29.412 442 279 14 39 467 38 459 1.13e-50 179
MS.gene061233.t1 MTR_4g021530 28.700 446 289 15 39 473 39 466 1.74e-50 179
MS.gene061233.t1 MTR_3g045770 27.571 457 285 12 35 473 22 450 1.08e-49 176
MS.gene061233.t1 MTR_4g057585 27.828 442 273 13 45 475 87 493 2.58e-49 176
MS.gene061233.t1 MTR_4g057595 27.273 440 274 13 47 475 90 494 8.51e-48 172
MS.gene061233.t1 MTR_4g021520 29.238 407 262 11 39 436 39 428 4.82e-47 168
MS.gene061233.t1 MTR_2g095730 26.174 447 270 13 48 474 88 494 1.19e-46 169
MS.gene061233.t1 MTR_4g122970 87.500 88 9 2 1 87 1 87 3.42e-45 153
MS.gene061233.t1 MTR_1g094155 27.907 430 272 12 52 474 88 486 3.45e-45 165
MS.gene061233.t1 MTR_2g095750 26.444 450 272 13 48 479 94 502 6.93e-44 162
MS.gene061233.t1 MTR_4g057570 26.068 468 274 13 33 474 68 489 7.50e-44 161
MS.gene061233.t1 MTR_2g009200 28.723 470 258 16 13 463 9 420 7.51e-44 160
MS.gene061233.t1 MTR_1g050545 27.517 447 251 14 53 474 82 480 3.47e-42 157
MS.gene061233.t1 MTR_4g057600 25.576 434 277 14 52 474 93 491 3.33e-41 154
MS.gene061233.t1 MTR_5g097180 26.498 434 258 11 56 472 43 432 1.92e-40 151
MS.gene061233.t1 MTR_4g021535 26.981 467 257 19 6 461 10 403 4.82e-38 144
MS.gene061233.t1 MTR_4g084710 26.526 426 268 11 56 472 45 434 7.51e-37 141
MS.gene061233.t1 MTR_0075s0010 27.000 400 186 14 38 421 6 315 7.55e-35 133
MS.gene061233.t1 MTR_2g018630 26.243 362 242 10 118 473 14 356 5.17e-32 126
MS.gene061233.t1 MTR_2g095710 23.982 442 283 17 42 474 83 480 2.92e-27 114
MS.gene061233.t1 MTR_4g056520 25.113 442 281 18 57 472 36 453 5.29e-19 89.7
MS.gene061233.t1 MTR_1g051175 40.000 110 57 4 36 138 2 109 2.11e-17 82.8
MS.gene061233.t1 MTR_5g021570 43.137 102 42 4 193 292 271 358 1.57e-16 81.6
MS.gene061233.t1 MTR_2g084530 26.185 443 269 20 57 470 36 449 1.27e-15 79.3
MS.gene061233.t1 MTR_7g100560 27.488 211 85 6 51 261 69 211 9.52e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061233.t1 AT3G17180 66.667 453 145 4 29 479 28 476 0.0 625
MS.gene061233.t1 AT3G17180 65.602 407 135 3 29 434 28 430 0.0 557
MS.gene061233.t1 AT1G11080 50.620 484 225 7 5 481 16 492 7.03e-169 485
MS.gene061233.t1 AT1G11080 50.620 484 225 7 5 481 16 492 8.49e-169 485
MS.gene061233.t1 AT4G15100 50.993 453 206 8 36 481 41 484 5.79e-168 483
MS.gene061233.t1 AT5G23210 52.516 457 204 7 32 479 44 496 2.29e-167 481
MS.gene061233.t1 AT1G61130 51.225 449 199 7 38 481 30 463 2.36e-164 473
MS.gene061233.t1 AT4G30610 49.469 471 220 8 10 478 8 462 3.38e-156 452
MS.gene061233.t1 AT2G24000 49.890 453 213 8 28 477 19 460 3.68e-149 434
MS.gene061233.t1 AT2G24010 47.748 444 212 4 36 478 27 451 8.04e-147 427
MS.gene061233.t1 AT5G08260 45.303 479 249 8 10 481 7 479 8.52e-147 429
MS.gene061233.t1 AT5G23210 50.971 412 189 7 32 434 44 451 2.20e-145 424
MS.gene061233.t1 AT3G02110 45.895 475 247 7 5 478 6 471 3.58e-145 424
MS.gene061233.t1 AT2G35780 47.758 446 210 6 36 478 26 451 2.33e-142 416
MS.gene061233.t1 AT2G24010 45.969 459 213 5 36 478 27 466 1.34e-141 415
MS.gene061233.t1 AT3G07990 48.198 444 209 8 38 478 32 457 4.17e-140 410
MS.gene061233.t1 AT5G23210 51.500 400 182 6 89 479 5 401 5.32e-139 406
MS.gene061233.t1 AT5G23210 51.515 396 180 6 93 479 8 400 7.07e-138 403
MS.gene061233.t1 AT4G30810 43.460 474 247 5 7 479 10 463 4.41e-137 404
MS.gene061233.t1 AT2G24010 43.542 480 211 6 40 478 2 462 9.84e-135 397
MS.gene061233.t1 AT2G35770 43.867 481 243 9 4 479 1 459 3.07e-132 390
MS.gene061233.t1 AT3G63470 43.043 460 227 8 25 478 67 497 2.12e-126 377
MS.gene061233.t1 AT5G23210 49.573 351 165 6 93 434 8 355 9.73e-116 345
MS.gene061233.t1 AT2G05850 40.851 470 245 9 17 478 40 484 2.25e-115 348
MS.gene061233.t1 AT3G52020 40.940 447 236 9 36 478 76 498 1.05e-112 342
MS.gene061233.t1 AT1G43780 39.479 461 241 10 38 482 36 474 6.37e-108 329
MS.gene061233.t1 AT3G52000 39.374 447 240 9 36 478 60 479 2.39e-106 325
MS.gene061233.t1 AT2G24010 44.385 374 173 5 40 397 2 356 5.24e-106 320
MS.gene061233.t1 AT3G52010 38.753 449 244 7 36 478 61 484 4.11e-105 322
MS.gene061233.t1 AT5G42240 39.783 460 242 11 33 478 26 464 3.94e-102 314
MS.gene061233.t1 AT2G33530 39.130 460 236 11 36 478 30 462 4.38e-102 313
MS.gene061233.t1 AT2G12480 39.693 456 242 12 33 478 25 457 9.46e-101 310
MS.gene061233.t1 AT1G28110 39.168 457 236 10 37 478 29 458 7.54e-99 305
MS.gene061233.t1 AT1G28110 39.168 457 236 10 37 478 29 458 7.54e-99 305
MS.gene061233.t1 AT2G12480 38.767 454 225 12 33 478 25 433 2.24e-96 298
MS.gene061233.t1 AT5G42230 38.147 464 244 13 33 478 22 460 5.54e-96 298
MS.gene061233.t1 AT5G42230 38.147 464 244 13 33 478 22 460 5.54e-96 298
MS.gene061233.t1 AT2G12480 38.326 454 225 12 33 478 25 431 1.19e-94 293
MS.gene061233.t1 AT2G12480 38.242 455 225 13 33 478 25 432 8.29e-93 289
MS.gene061233.t1 AT4G12910 34.449 508 285 17 5 477 3 497 2.79e-87 276
MS.gene061233.t1 AT3G25420 34.884 473 265 13 40 477 30 494 1.66e-84 269
MS.gene061233.t1 AT4G12910 33.691 466 262 16 5 436 3 455 2.33e-76 247
MS.gene061233.t1 AT2G24000 44.637 289 148 6 191 477 119 397 4.42e-74 239
MS.gene061233.t1 AT2G24000 58.000 100 40 2 28 126 19 117 9.40e-29 117
MS.gene061233.t1 AT2G22990 29.730 444 267 12 43 477 26 433 4.38e-59 201
MS.gene061233.t1 AT3G56540 57.233 159 66 2 36 194 76 232 2.02e-57 191
MS.gene061233.t1 AT1G73280 29.474 475 285 14 15 477 5 441 7.68e-56 192
MS.gene061233.t1 AT3G45010 28.803 493 304 14 6 481 44 506 1.14e-55 194
MS.gene061233.t1 AT1G73270 30.290 449 262 14 40 477 33 441 1.98e-55 191
MS.gene061233.t1 AT1G73270 30.290 449 262 14 40 477 33 441 3.47e-55 191
MS.gene061233.t1 AT2G22990 29.904 418 249 11 43 451 26 408 4.69e-55 189
MS.gene061233.t1 AT2G22990 29.833 419 250 11 43 452 26 409 5.71e-55 191
MS.gene061233.t1 AT2G22920 29.663 445 266 11 43 477 28 435 1.28e-54 189
MS.gene061233.t1 AT2G22970 29.438 445 265 13 43 477 28 433 1.22e-53 186
MS.gene061233.t1 AT3G10450 30.958 449 259 13 40 477 29 437 1.44e-53 186
MS.gene061233.t1 AT2G22990 28.829 444 262 13 43 477 26 424 1.28e-52 183
MS.gene061233.t1 AT1G73290 30.543 442 262 14 43 477 35 438 1.66e-52 183
MS.gene061233.t1 AT3G12203 30.631 444 260 14 43 477 12 416 2.12e-52 182
MS.gene061233.t1 AT1G33540 29.605 456 283 13 40 477 29 464 2.29e-52 184
MS.gene061233.t1 AT1G73300 29.399 449 260 14 43 477 36 441 2.37e-52 183
MS.gene061233.t1 AT1G73300 29.399 449 260 14 43 477 36 441 2.37e-52 183
MS.gene061233.t1 AT3G12203 30.405 444 261 13 43 477 33 437 3.06e-52 182
MS.gene061233.t1 AT2G23000 28.508 449 274 12 40 477 25 437 3.46e-52 182
MS.gene061233.t1 AT2G23000 28.508 449 274 12 40 477 25 437 3.46e-52 182
MS.gene061233.t1 AT2G22980 28.153 444 268 12 43 477 29 430 1.98e-51 180
MS.gene061233.t1 AT3G10450 31.090 431 246 13 58 477 4 394 3.66e-51 179
MS.gene061233.t1 AT5G36180 29.425 452 262 14 40 477 33 441 9.68e-51 179
MS.gene061233.t1 AT1G33540 29.224 438 272 13 58 477 4 421 4.82e-50 176
MS.gene061233.t1 AT2G22920 29.803 406 240 9 43 439 28 397 2.19e-49 174
MS.gene061233.t1 AT2G22970 29.216 421 250 12 43 453 28 410 4.38e-49 174
MS.gene061233.t1 AT1G73310 29.083 447 264 15 43 477 36 441 7.12e-49 174
MS.gene061233.t1 AT2G22970 29.048 420 250 12 43 452 28 409 8.67e-49 173
MS.gene061233.t1 AT3G12203 30.383 418 243 14 69 477 1 379 9.07e-49 172
MS.gene061233.t1 AT3G10410 27.664 441 268 13 45 472 90 492 1.60e-48 174
MS.gene061233.t1 AT2G22980 28.162 419 251 11 43 452 29 406 1.76e-48 172
MS.gene061233.t1 AT3G10450 30.660 424 244 12 40 452 29 413 1.95e-48 172
MS.gene061233.t1 AT2G23010 26.971 482 290 14 11 477 3 437 3.41e-48 172
MS.gene061233.t1 AT2G22980 27.869 427 258 11 43 460 29 414 5.64e-48 171
MS.gene061233.t1 AT2G23010 26.763 482 291 14 11 477 3 437 1.37e-47 170
MS.gene061233.t1 AT5G09640 27.000 500 307 16 1 477 1 465 1.69e-47 171
MS.gene061233.t1 AT1G73290 30.273 403 238 12 43 439 35 400 6.68e-47 167
MS.gene061233.t1 AT3G12220 29.018 448 269 11 40 477 27 435 6.88e-47 168
MS.gene061233.t1 AT3G10450 30.788 406 231 12 58 452 4 370 3.05e-46 165
MS.gene061233.t1 AT5G22980 27.790 439 270 15 47 474 91 493 6.07e-46 167
MS.gene061233.t1 AT3G12230 29.241 448 268 14 40 477 27 435 4.00e-45 164
MS.gene061233.t1 AT3G12220 28.837 430 257 11 58 477 15 405 1.02e-44 162
MS.gene061233.t1 AT1G73310 28.851 409 236 12 43 438 36 402 1.81e-44 162
MS.gene061233.t1 AT3G12240 28.667 450 268 14 40 477 28 436 2.42e-44 161
MS.gene061233.t1 AT2G22920 35.115 262 159 5 43 296 28 286 1.35e-42 154
MS.gene061233.t1 AT1G73280 32.765 293 183 7 15 296 5 294 8.60e-42 153
MS.gene061233.t1 AT2G22970 33.588 262 162 6 43 296 28 285 8.27e-40 146
MS.gene061233.t1 AT1G73290 37.273 220 130 4 43 257 35 251 1.15e-39 145
MS.gene061233.t1 AT2G22980 32.955 264 159 6 43 296 29 284 3.70e-38 142
MS.gene061233.t1 AT2G22990 27.479 353 217 10 129 477 2 319 3.54e-37 139
MS.gene061233.t1 AT2G22990 27.195 353 218 10 129 477 2 319 1.70e-36 137
MS.gene061233.t1 AT1G15000 27.315 432 262 14 56 477 37 426 2.20e-36 140
MS.gene061233.t1 AT1G73280 27.747 364 222 11 118 477 13 339 1.79e-35 135
MS.gene061233.t1 AT3G12220 35.426 223 134 5 40 256 27 245 4.78e-33 129
MS.gene061233.t1 AT1G73280 27.635 351 213 11 131 477 1 314 1.42e-32 126
MS.gene061233.t1 AT5G36180 27.371 369 217 12 118 477 13 339 4.55e-32 125
MS.gene061233.t1 AT5G36180 27.371 369 217 12 118 477 13 339 4.55e-32 125
MS.gene061233.t1 AT5G36180 26.744 344 202 11 118 452 13 315 1.35e-27 112
MS.gene061233.t1 AT5G22960 35.196 179 93 4 39 217 19 174 1.37e-27 109
MS.gene061233.t1 AT2G22980 25.305 328 201 9 129 452 2 289 2.25e-27 111
MS.gene061233.t1 AT5G36180 26.446 363 211 11 118 467 13 332 8.92e-27 110
MS.gene061233.t1 AT1G73310 26.911 327 194 11 118 438 13 300 4.15e-26 108
MS.gene061233.t1 AT2G27920 23.356 441 284 16 57 468 37 452 1.29e-18 88.6
MS.gene061233.t1 AT2G22960 30.469 128 85 3 351 477 60 184 3.14e-13 68.6

Find 100 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACACCTTTATTAATCTTAA+AGG 0.112312 8.3:+5892702 MS.gene061233:CDS
TCATAGTAATCTTCAGTTTC+TGG 0.116767 8.3:-5893100 None:intergenic
CCAGAGAAGGAGAGGTTTAT+TGG 0.191451 8.3:-5891513 None:intergenic
AAACCTTGATTCCAAGAGTA+TGG 0.242904 8.3:-5891928 None:intergenic
ATGTTAGTCCTTCACCATTT+TGG 0.253170 8.3:-5891900 None:intergenic
TCTACCTTGGAAAATGATTC+AGG 0.260931 8.3:-5893349 None:intergenic
CTTATTCATTCTTTCCTAAC+TGG 0.264101 8.3:+5894920 MS.gene061233:CDS
CCTACAATTTCTTGGTGAAT+TGG 0.271062 8.3:+5892320 MS.gene061233:CDS
CGATATTGTGTTGAGGCTTT+AGG 0.279075 8.3:+5894333 MS.gene061233:CDS
GCCTTAAGATATGGATTTAC+AGG 0.283869 8.3:+5893871 MS.gene061233:CDS
TTTGATGAGTTTGGTGTAGA+TGG 0.323218 8.3:-5893844 None:intergenic
TAACCTGAAAAGTGTGAAAT+TGG 0.324453 8.3:-5891422 None:intergenic
AAAACCTTTAAGATTAATAA+AGG 0.334038 8.3:-5892706 None:intergenic
AAGGCCACCTTTGATGAGTT+TGG 0.339294 8.3:-5893853 None:intergenic
TGAGGATGCCTACAATTTCT+TGG 0.340044 8.3:+5892312 MS.gene061233:CDS
GATCTCCAAGTAGACTTTAG+AGG 0.351455 8.3:-5894360 None:intergenic
CCAATAAACCTCTCCTTCTC+TGG 0.363351 8.3:+5891513 MS.gene061233:CDS
AATAGAGGACCTGATTATTA+TGG 0.363598 8.3:-5894389 None:intergenic
GGATGCTCCTCAATTGGATA+TGG 0.380521 8.3:+5891844 MS.gene061233:CDS
TCAAAGGTGGCCTTAAGATA+TGG 0.384822 8.3:+5893862 MS.gene061233:CDS
AGAAGCAAATTTGTTATTTG+TGG 0.388540 8.3:+5892114 MS.gene061233:intron
GATGATCATGGACGTATAGT+AGG 0.395363 8.3:-5894953 None:intergenic
AACCCATACTCTTGGAATCA+AGG 0.399186 8.3:+5891925 MS.gene061233:CDS
GAAGTTGTAAGTCCTCAATA+TGG 0.403385 8.3:-5893802 None:intergenic
TTAAAACAAAGAAACATATT+AGG 0.406269 8.3:-5891301 None:intergenic
CCAATTCACCAAGAAATTGT+AGG 0.412556 8.3:-5892320 None:intergenic
GCAGGTTGGAGGAAGGATAG+TGG 0.413209 8.3:+5894817 MS.gene061233:intron
TAAAGTCTACTTGGAGATCT+TGG 0.417999 8.3:+5894364 MS.gene061233:CDS
ACCTGTAAATCCATATCTTA+AGG 0.420489 8.3:-5893872 None:intergenic
GGACCTGGATGCTCCTCAAT+TGG 0.424061 8.3:+5891838 MS.gene061233:intron
CCTCTCCTTCTCTGGCTCAA+TGG 0.426524 8.3:+5891521 MS.gene061233:CDS
GATGGCAGACTACCTGTGAT+AGG 0.427462 8.3:+5894306 MS.gene061233:CDS
GACTCCATGCATATTCTAGA+AGG 0.432732 8.3:-5893132 None:intergenic
AGTGAGATCAGAAGAGGTAT+TGG 0.440147 8.3:-5892167 None:intergenic
TATCAATTTCTGAGTAATCA+TGG 0.448420 8.3:-5893258 None:intergenic
CAAAGAAACATATTAGGAAC+TGG 0.455768 8.3:-5891295 None:intergenic
CTTCAAAGAACCAATAGAAA+AGG 0.464372 8.3:-5891475 None:intergenic
ATCTTGGTACCATAATAATC+AGG 0.468032 8.3:+5894380 MS.gene061233:CDS
GACTACCTCTAAAGTCTACT+TGG 0.468519 8.3:+5894355 MS.gene061233:CDS
TAACATTCAACCCATACTCT+TGG 0.474372 8.3:+5891917 MS.gene061233:CDS
TATGGTGCTGTTGTTGAGAT+AGG 0.477166 8.3:+5891862 MS.gene061233:CDS
ATCACTGTCAATGAAGATCA+TGG 0.479403 8.3:+5891446 MS.gene061233:CDS
GTGGAGTCACCCATTGGAGT+TGG 0.482769 8.3:+5892133 MS.gene061233:CDS
ATGGTCTAATGAGTGCAATC+AGG 0.483081 8.3:+5893219 MS.gene061233:CDS
TAGGGAGATGATCTCCAGTT+AGG 0.484012 8.3:-5894934 None:intergenic
TTATTTGTGGAGTCACCCAT+TGG 0.489508 8.3:+5892127 MS.gene061233:CDS
GGAAGGATAGTGGAGTATGA+AGG 0.491007 8.3:+5894827 MS.gene061233:CDS
GATTTCCACAGTTTAAATCC+AGG 0.503025 8.3:+5892350 MS.gene061233:CDS
TATCCAATTGAGGAGCATCC+AGG 0.510961 8.3:-5891841 None:intergenic
GCCTCAGTTGGTTTGTTGAG+AGG 0.512490 8.3:-5894890 None:intergenic
CTGCAAGCTGAGGGATATAG+TGG 0.516994 8.3:-5892644 None:intergenic
TTCAAAGAACCAATAGAAAA+GGG 0.520725 8.3:-5891474 None:intergenic
CTACCTTGGAAAATGATTCA+GGG 0.521127 8.3:-5893348 None:intergenic
ATAGCAGGAGAAAGCTATGC+TGG 0.522630 8.3:+5892382 MS.gene061233:CDS
AAAGCATCTGAAATAAATGT+TGG 0.522670 8.3:+5891347 MS.gene061233:CDS
AGAAGGAGAGGTTTATTGGA+GGG 0.531052 8.3:-5891509 None:intergenic
AACCTTGATTCCAAGAGTAT+GGG 0.534967 8.3:-5891927 None:intergenic
ATGAATGGAATGCAGGTTGG+AGG 0.537003 8.3:+5894806 MS.gene061233:intron
AAGAAAACAATAACATAGCA+TGG 0.541066 8.3:+5893674 MS.gene061233:CDS
ATTTCCACAGTTTAAATCCA+GGG 0.543200 8.3:+5892351 MS.gene061233:CDS
AAACAATAACATAGCATGGA+AGG 0.547773 8.3:+5893678 MS.gene061233:CDS
CTCCTTCTCTGGCTCAATGG+AGG 0.548120 8.3:+5891524 MS.gene061233:CDS
ATGGAATGCAGGTTGGAGGA+AGG 0.549335 8.3:+5894810 MS.gene061233:intron
TATGTGACAGTGAGAGGAGC+TGG 0.554988 8.3:+5894857 MS.gene061233:CDS
TGAGTTTGGTGTAGATGGGC+AGG 0.558897 8.3:-5893839 None:intergenic
ATGATCATGGACGTATAGTA+GGG 0.561185 8.3:-5894952 None:intergenic
TTAGTCAACCAAAATGGTGA+AGG 0.569534 8.3:+5891892 MS.gene061233:CDS
AAGATTAACTCTGCAAGCTG+AGG 0.573791 8.3:-5892654 None:intergenic
AAGGCCTTCTAGAATATGCA+TGG 0.576001 8.3:+5893128 MS.gene061233:CDS
GGTGGTGTCGAAGGTTGTCC+TGG 0.577699 8.3:-5891401 None:intergenic
CCTGAAAAGTGTGAAATTGG+TGG 0.577902 8.3:-5891419 None:intergenic
TTGATGAGTTTGGTGTAGAT+GGG 0.579382 8.3:-5893843 None:intergenic
GAGAAGGAGAGGTTTATTGG+AGG 0.580591 8.3:-5891510 None:intergenic
CCATTGAGCCAGAGAAGGAG+AGG 0.585851 8.3:-5891521 None:intergenic
TTGACATATGTGACAGTGAG+AGG 0.587941 8.3:+5894851 MS.gene061233:CDS
TGTGAAATTGGTGGTGTCGA+AGG 0.589267 8.3:-5891410 None:intergenic
TAAAATAGTGAGATCAGAAG+AGG 0.589307 8.3:-5892173 None:intergenic
AACAGCACCATATCCAATTG+AGG 0.590506 8.3:-5891851 None:intergenic
AGATTAACTCTGCAAGCTGA+GGG 0.592878 8.3:-5892653 None:intergenic
CAATATCGTGTCCCTATCAC+AGG 0.593552 8.3:-5894318 None:intergenic
TCACTGTCAATGAAGATCAT+GGG 0.594629 8.3:+5891447 MS.gene061233:CDS
CACCTCCATTGAGCCAGAGA+AGG 0.598697 8.3:-5891526 None:intergenic
TGCTTTAATGAACAATGAAG+TGG 0.601083 8.3:-5891330 None:intergenic
ATGGCAGACTACCTGTGATA+GGG 0.603092 8.3:+5894307 MS.gene061233:CDS
AGTGAGAGGAGCTGGTCACT+TGG 0.603748 8.3:+5894865 MS.gene061233:CDS
GTACTGTTTGAATGACATGC+TGG 0.606307 8.3:-5893298 None:intergenic
AAGTCCCTGGATTTAAACTG+TGG 0.613586 8.3:-5892355 None:intergenic
ATAAGAGAGAGAGCCTCAGT+TGG 0.632043 8.3:-5894902 None:intergenic
GAAGATTACTATGACAACAA+AGG 0.634842 8.3:+5893109 MS.gene061233:CDS
CTGTCAATGAAGATCATGGG+AGG 0.639911 8.3:+5891450 MS.gene061233:CDS
AAAATGATTATAGAATGAAG+AGG 0.640286 8.3:+5893551 MS.gene061233:CDS
ATTAATAGTGGAGATGCAGA+TGG 0.641384 8.3:+5894288 MS.gene061233:intron
GCCTCTCAACAAACCAACTG+AGG 0.642126 8.3:+5894889 MS.gene061233:CDS
ATCTACACCAAACTCATCAA+AGG 0.646779 8.3:+5893846 MS.gene061233:CDS
TCTGCATATGTGGAATAACA+AGG 0.650025 8.3:-5893598 None:intergenic
TGTCAATGAAGATCATGGGA+GGG 0.660889 8.3:+5891451 MS.gene061233:CDS
TACACCAAACTCATCAAAGG+TGG 0.666201 8.3:+5893849 MS.gene061233:CDS
ATTATTTGTTACTGTCACTG+AGG 0.669384 8.3:-5893323 None:intergenic
AGGGACACGATATTGTGTTG+AGG 0.672514 8.3:+5894326 MS.gene061233:CDS
GATAGAATAAGTGATCTACC+AGG 0.720379 8.3:+5891383 MS.gene061233:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAATTAATTTTTTTTAA+AGG + chr8.3:5894653-5894672 MS.gene061233:intron 0.0%
!! AAAAAATAAAAATCATTTAG+GGG - chr8.3:5893068-5893087 None:intergenic 10.0%
!! ATAGAATAAATTATCAATTA+AGG - chr8.3:5893735-5893754 None:intergenic 10.0%
!! GAAAAAATAAAAATCATTTA+GGG - chr8.3:5893069-5893088 None:intergenic 10.0%
!! TAGAATAAATTATCAATTAA+GGG - chr8.3:5893734-5893753 None:intergenic 10.0%
!! TGAAAAAATAAAAATCATTT+AGG - chr8.3:5893070-5893089 None:intergenic 10.0%
!! TTAATTAAGAATTTATACAA+TGG - chr8.3:5894425-5894444 None:intergenic 10.0%
!!! TAAATGATTTTTATTTTTTC+AGG + chr8.3:5893069-5893088 MS.gene061233:intron 10.0%
!!! TAGTTTGTAATTAAATATTA+CGG - chr8.3:5892281-5892300 None:intergenic 10.0%
!!! TATCTTTTTTTTTTTTTTGA+GGG + chr8.3:5894016-5894035 MS.gene061233:intron 10.0%
!!! TTAAATTCTAAAATTAATAG+AGG + chr8.3:5894138-5894157 MS.gene061233:intron 10.0%
!! AAATAAAGAATGGAAAATTA+AGG + chr8.3:5892754-5892773 MS.gene061233:intron 15.0%
!! ATACTTCATAGTAAAAAATT+GGG - chr8.3:5891964-5891983 None:intergenic 15.0%
!! TAAAAATAAGTATTAAGTCT+CGG - chr8.3:5891717-5891736 None:intergenic 15.0%
!! TATACTTCATAGTAAAAAAT+TGG - chr8.3:5891965-5891984 None:intergenic 15.0%
!! TTAAAACAAAGAAACATATT+AGG - chr8.3:5891304-5891323 None:intergenic 15.0%
!! TTATTATTAGTAAATGTTAG+TGG + chr8.3:5891584-5891603 MS.gene061233:intron 15.0%
!!! AAAACCTTTAAGATTAATAA+AGG - chr8.3:5892709-5892728 None:intergenic 15.0%
!!! AACATATAGTTTTTTATGTA+TGG + chr8.3:5891738-5891757 MS.gene061233:intron 15.0%
!!! CTATCTTTTTTTTTTTTTTG+AGG + chr8.3:5894015-5894034 MS.gene061233:intron 15.0%
!!! TAATTTTCCATTCTTTATTT+TGG - chr8.3:5892754-5892773 None:intergenic 15.0%
!! AAAATGATTATAGAATGAAG+AGG + chr8.3:5893551-5893570 MS.gene061233:CDS 20.0%
!! AAAATGCATTTATGACTTTA+TGG + chr8.3:5894105-5894124 MS.gene061233:intron 20.0%
!! AAATAGTTGCAATAAAAATG+TGG - chr8.3:5892618-5892637 None:intergenic 20.0%
!! AACACCTTTATTAATCTTAA+AGG + chr8.3:5892702-5892721 MS.gene061233:CDS 20.0%
!! GTAAAAATACACAATCTATA+TGG - chr8.3:5893996-5894015 None:intergenic 20.0%
!! TAAATAAATATGACTAGAGT+TGG - chr8.3:5891774-5891793 None:intergenic 20.0%
!! TAATTTCAACTAAGACTTAA+TGG + chr8.3:5894686-5894705 MS.gene061233:intron 20.0%
!! TATATATCTATTCAGTCTTA+AGG - chr8.3:5893941-5893960 None:intergenic 20.0%
!!! ACAATATTTGTTTAAGTTAG+AGG + chr8.3:5893505-5893524 MS.gene061233:intron 20.0%
!!! AGCTTTCTTAAATAGTTTTT+AGG - chr8.3:5892864-5892883 None:intergenic 20.0%
!!! CAATATTTGTTTAAGTTAGA+GGG + chr8.3:5893506-5893525 MS.gene061233:intron 20.0%
!!! GATTTTTATTTTTTCAGGTA+GGG + chr8.3:5893074-5893093 MS.gene061233:intron 20.0%
!!! TGATTTTTATTTTTTCAGGT+AGG + chr8.3:5893073-5893092 MS.gene061233:intron 20.0%
!!! TTGAAAAAGTATTATGAAAG+AGG - chr8.3:5891662-5891681 None:intergenic 20.0%
!!! TTTTATTGCAACTATTTTTC+AGG + chr8.3:5892621-5892640 MS.gene061233:intron 20.0%
! AAGAAAACAATAACATAGCA+TGG + chr8.3:5893674-5893693 MS.gene061233:CDS 25.0%
! AATACACAATCTATATGGTT+AGG - chr8.3:5893991-5894010 None:intergenic 25.0%
! AATGGCAAAAAGATAAATAG+AGG - chr8.3:5894407-5894426 None:intergenic 25.0%
! ACTGAAAAATTAGACATAGA+TGG - chr8.3:5893778-5893797 None:intergenic 25.0%
! ATAAGGATCCATATTGTTTA+TGG + chr8.3:5894066-5894085 MS.gene061233:intron 25.0%
! ATAGAATTGTTAGTAGCTTT+CGG + chr8.3:5894172-5894191 MS.gene061233:intron 25.0%
! ATGGAAAATTAAGGAGATTA+AGG + chr8.3:5892763-5892782 MS.gene061233:intron 25.0%
! CTATCTCATCTTTATAGATA+AGG + chr8.3:5894049-5894068 MS.gene061233:intron 25.0%
! GTATGAATTTATTAGCAACA+TGG + chr8.3:5891623-5891642 MS.gene061233:intron 25.0%
! GTGTTATAAAAAAGTGATTC+TGG - chr8.3:5893023-5893042 None:intergenic 25.0%
! TACTCTAAATTAATGTCGTT+AGG + chr8.3:5893911-5893930 MS.gene061233:intron 25.0%
! TATCAATTTCTGAGTAATCA+TGG - chr8.3:5893261-5893280 None:intergenic 25.0%
! TCCTTAACCAAAATAAAGAA+TGG + chr8.3:5892744-5892763 MS.gene061233:intron 25.0%
! TTCAAAGAACCAATAGAAAA+GGG - chr8.3:5891477-5891496 None:intergenic 25.0%
!! AAAGCATCTGAAATAAATGT+TGG + chr8.3:5891347-5891366 MS.gene061233:CDS 25.0%
!! ATTCTTTTTGCAGCATTTAT+TGG - chr8.3:5892052-5892071 None:intergenic 25.0%
!! GTGATTTTAAACAATCTCAA+TGG + chr8.3:5893200-5893219 MS.gene061233:CDS 25.0%
!! TAAGACTTAATGGATATGAA+TGG + chr8.3:5894791-5894810 MS.gene061233:intron 25.0%
!! TTTAAGTTAGAGGGAAAATT+TGG + chr8.3:5893515-5893534 MS.gene061233:intron 25.0%
!!! AGAAAATTTTGAGTTTACAG+CGG - chr8.3:5894765-5894784 None:intergenic 25.0%
!!! AGAAGCAAATTTGTTATTTG+TGG + chr8.3:5892114-5892133 MS.gene061233:intron 25.0%
!!! ATTTTAGAGGATCATTTTGT+AGG + chr8.3:5892190-5892209 MS.gene061233:CDS 25.0%
!!! TCCATTCTTTATTTTGGTTA+AGG - chr8.3:5892748-5892767 None:intergenic 25.0%
AAACAATAACATAGCATGGA+AGG + chr8.3:5893678-5893697 MS.gene061233:CDS 30.0%
AATAGAGGACCTGATTATTA+TGG - chr8.3:5894392-5894411 None:intergenic 30.0%
ACCTGTAAATCCATATCTTA+AGG - chr8.3:5893875-5893894 None:intergenic 30.0%
AGTATTATGAAAGAGGTTCA+AGG - chr8.3:5891655-5891674 None:intergenic 30.0%
ATAAGTATTAAGTCTCGGAA+AGG - chr8.3:5891712-5891731 None:intergenic 30.0%
ATCTTGGTACCATAATAATC+AGG + chr8.3:5894380-5894399 MS.gene061233:CDS 30.0%
ATTTCCACAGTTTAAATCCA+GGG + chr8.3:5892351-5892370 MS.gene061233:CDS 30.0%
CAAAGAAACATATTAGGAAC+TGG - chr8.3:5891298-5891317 None:intergenic 30.0%
CACTATTAATTCATTCCACA+AGG - chr8.3:5894278-5894297 None:intergenic 30.0%
CTTATTCATTCTTTCCTAAC+TGG + chr8.3:5894920-5894939 MS.gene061233:CDS 30.0%
CTTCAAAGAACCAATAGAAA+AGG - chr8.3:5891478-5891497 None:intergenic 30.0%
CTTGTGGAATGAATTAATAG+TGG + chr8.3:5894276-5894295 MS.gene061233:intron 30.0%
GAAAAATTCTTCTGCATATG+TGG - chr8.3:5893611-5893630 None:intergenic 30.0%
GAAGATTACTATGACAACAA+AGG + chr8.3:5893109-5893128 MS.gene061233:CDS 30.0%
TAAAATAGTGAGATCAGAAG+AGG - chr8.3:5892176-5892195 None:intergenic 30.0%
TAAGAAAAACCAACTCCAAT+GGG - chr8.3:5892145-5892164 None:intergenic 30.0%
TCATAGTAATCTTCAGTTTC+TGG - chr8.3:5893103-5893122 None:intergenic 30.0%
TCATATCCATTAAGTCTTAG+AGG - chr8.3:5894790-5894809 None:intergenic 30.0%
TGCTTTAATGAACAATGAAG+TGG - chr8.3:5891333-5891352 None:intergenic 30.0%
TGTAATGTTGCCTTTGAATT+AGG + chr8.3:5891817-5891836 MS.gene061233:intron 30.0%
TTTATTGGCACAGCAATAAT+TGG - chr8.3:5892037-5892056 None:intergenic 30.0%
! ATGAAGAGGATGAGAATTTT+TGG + chr8.3:5893565-5893584 MS.gene061233:CDS 30.0%
! ATTATTTGTTACTGTCACTG+AGG - chr8.3:5893326-5893345 None:intergenic 30.0%
! TAACCTGAAAAGTGTGAAAT+TGG - chr8.3:5891425-5891444 None:intergenic 30.0%
! TGAAGAGGATGAGAATTTTT+GGG + chr8.3:5893566-5893585 MS.gene061233:CDS 30.0%
! TTTTCAGTGATTCCATATTG+AGG + chr8.3:5893790-5893809 MS.gene061233:intron 30.0%
!! ATGCAGAAGAATTTTTCAAC+AGG + chr8.3:5893614-5893633 MS.gene061233:CDS 30.0%
!! ATGTTAGTGGTTAATTTGCT+AGG + chr8.3:5891597-5891616 MS.gene061233:intron 30.0%
!! CAAAATAGCTTCTGCTATTT+TGG + chr8.3:5892962-5892981 MS.gene061233:intron 30.0%
!! TGCAGAAGAATTTTTCAACA+GGG + chr8.3:5893615-5893634 MS.gene061233:CDS 30.0%
!! TGTTAGTGGTTAATTTGCTA+GGG + chr8.3:5891598-5891617 MS.gene061233:intron 30.0%
!! TTCTGATCTCACTATTTTAG+AGG + chr8.3:5892177-5892196 MS.gene061233:CDS 30.0%
AAACCTTGATTCCAAGAGTA+TGG - chr8.3:5891931-5891950 None:intergenic 35.0%
AACTTCTCAATCTATGCCAA+TGG + chr8.3:5891680-5891699 MS.gene061233:intron 35.0%
AATGGATATGAATGGAATGC+AGG + chr8.3:5894799-5894818 MS.gene061233:intron 35.0%
AGGGAAAATTTGGTTATTGC+AGG + chr8.3:5893525-5893544 MS.gene061233:intron 35.0%
ATCACTGTCAATGAAGATCA+TGG + chr8.3:5891446-5891465 MS.gene061233:CDS 35.0%
ATCTACACCAAACTCATCAA+AGG + chr8.3:5893846-5893865 MS.gene061233:CDS 35.0%
CACTTGGTCCATAAACAATA+TGG - chr8.3:5894077-5894096 None:intergenic 35.0%
CCAATTCACCAAGAAATTGT+AGG - chr8.3:5892323-5892342 None:intergenic 35.0%
CCTACAATTTCTTGGTGAAT+TGG + chr8.3:5892320-5892339 MS.gene061233:CDS 35.0%
CTACCTTGGAAAATGATTCA+GGG - chr8.3:5893351-5893370 None:intergenic 35.0%
GAAGTTGTAAGTCCTCAATA+TGG - chr8.3:5893805-5893824 None:intergenic 35.0%
GAGAATGAGGAAAATTACAG+TGG + chr8.3:5894533-5894552 MS.gene061233:intron 35.0%
GAGTTACTTGATTGAGTTTG+TGG + chr8.3:5894565-5894584 MS.gene061233:intron 35.0%
GATAGAATAAGTGATCTACC+AGG + chr8.3:5891383-5891402 MS.gene061233:CDS 35.0%
GATTTCCACAGTTTAAATCC+AGG + chr8.3:5892350-5892369 MS.gene061233:CDS 35.0%
GCCTTAAGATATGGATTTAC+AGG + chr8.3:5893871-5893890 MS.gene061233:CDS 35.0%
GTAAGAAAAACCAACTCCAA+TGG - chr8.3:5892146-5892165 None:intergenic 35.0%
GTATGTTTGTTTGTACCTTG+TGG + chr8.3:5894260-5894279 MS.gene061233:intron 35.0%
GTGACATTAGTTATCTACCT+TGG - chr8.3:5893365-5893384 None:intergenic 35.0%
TAAAGTCTACTTGGAGATCT+TGG + chr8.3:5894364-5894383 MS.gene061233:CDS 35.0%
TAACATTCAACCCATACTCT+TGG + chr8.3:5891917-5891936 MS.gene061233:CDS 35.0%
TAGATACACATTGCACATAC+AGG - chr8.3:5892484-5892503 None:intergenic 35.0%
TCACTGTCAATGAAGATCAT+GGG + chr8.3:5891447-5891466 MS.gene061233:CDS 35.0%
TCTACCTTGGAAAATGATTC+AGG - chr8.3:5893352-5893371 None:intergenic 35.0%
TCTGCATATGTGGAATAACA+AGG - chr8.3:5893601-5893620 None:intergenic 35.0%
TTAGTCAACCAAAATGGTGA+AGG + chr8.3:5891892-5891911 MS.gene061233:CDS 35.0%
! AACCTTGATTCCAAGAGTAT+GGG - chr8.3:5891930-5891949 None:intergenic 35.0%
! ATGAAGCACTAAGACATACA+CGG - chr8.3:5892562-5892581 None:intergenic 35.0%
! ATGTTAGTCCTTCACCATTT+TGG - chr8.3:5891903-5891922 None:intergenic 35.0%
! ATTAATAGTGGAGATGCAGA+TGG + chr8.3:5894288-5894307 MS.gene061233:intron 35.0%
! CATTTAGGGGTGCATATTTA+GGG - chr8.3:5893055-5893074 None:intergenic 35.0%
! CCTCTTTTAGTCAACCAAAA+TGG + chr8.3:5891886-5891905 MS.gene061233:CDS 35.0%
! GAAGAGGATGAGAATTTTTG+GGG + chr8.3:5893567-5893586 MS.gene061233:CDS 35.0%
! GTTTTGCTTTCTCATATTGC+TGG - chr8.3:5893174-5893193 None:intergenic 35.0%
! TCATTTAGGGGTGCATATTT+AGG - chr8.3:5893056-5893075 None:intergenic 35.0%
! TGCATTTTTCACTTTGCACT+TGG - chr8.3:5894093-5894112 None:intergenic 35.0%
!! AAGAGGATGAGAATTTTTGG+GGG + chr8.3:5893568-5893587 MS.gene061233:CDS 35.0%
!! GTTAGTGGTTAATTTGCTAG+GGG + chr8.3:5891599-5891618 MS.gene061233:intron 35.0%
!! TTCTCTCCTCTAAGACTTAA+TGG + chr8.3:5894781-5894800 MS.gene061233:intron 35.0%
!! TTGATGAGTTTGGTGTAGAT+GGG - chr8.3:5893846-5893865 None:intergenic 35.0%
!! TTTGATGAGTTTGGTGTAGA+TGG - chr8.3:5893847-5893866 None:intergenic 35.0%
!!! CCATTTTGGTTGACTAAAAG+AGG - chr8.3:5891889-5891908 None:intergenic 35.0%
!!! CGCATTTTGATTAGAGAATG+AGG + chr8.3:5894520-5894539 MS.gene061233:intron 35.0%
AACAGCACCATATCCAATTG+AGG - chr8.3:5891854-5891873 None:intergenic 40.0%
AACCCATACTCTTGGAATCA+AGG + chr8.3:5891925-5891944 MS.gene061233:CDS 40.0%
AAGATTAACTCTGCAAGCTG+AGG - chr8.3:5892657-5892676 None:intergenic 40.0%
AAGTCCCTGGATTTAAACTG+TGG - chr8.3:5892358-5892377 None:intergenic 40.0%
AGAAGGAGAGGTTTATTGGA+GGG - chr8.3:5891512-5891531 None:intergenic 40.0%
AGATTAACTCTGCAAGCTGA+GGG - chr8.3:5892656-5892675 None:intergenic 40.0%
ATGGTCTAATGAGTGCAATC+AGG + chr8.3:5893219-5893238 MS.gene061233:CDS 40.0%
CAAACTACTTGAATCAGCTG+AGG + chr8.3:5892294-5892313 MS.gene061233:intron 40.0%
CGATATTGTGTTGAGGCTTT+AGG + chr8.3:5894333-5894352 MS.gene061233:CDS 40.0%
GACTCCATGCATATTCTAGA+AGG - chr8.3:5893135-5893154 None:intergenic 40.0%
GATATGAATGGAATGCAGGT+TGG + chr8.3:5894803-5894822 MS.gene061233:intron 40.0%
GATCTCCAAGTAGACTTTAG+AGG - chr8.3:5894363-5894382 None:intergenic 40.0%
GTACTGTTTGAATGACATGC+TGG - chr8.3:5893301-5893320 None:intergenic 40.0%
GTTAGTAGCTTTCGGTGAAA+GGG + chr8.3:5894180-5894199 MS.gene061233:intron 40.0%
TACACCAAACTCATCAAAGG+TGG + chr8.3:5893849-5893868 MS.gene061233:CDS 40.0%
TGAGGATGCCTACAATTTCT+TGG + chr8.3:5892312-5892331 MS.gene061233:CDS 40.0%
TGTCAATGAAGATCATGGGA+GGG + chr8.3:5891451-5891470 MS.gene061233:CDS 40.0%
TGTTAGTAGCTTTCGGTGAA+AGG + chr8.3:5894179-5894198 MS.gene061233:intron 40.0%
TTATTTGTGGAGTCACCCAT+TGG + chr8.3:5892127-5892146 MS.gene061233:CDS 40.0%
TTGACATATGTGACAGTGAG+AGG + chr8.3:5894851-5894870 MS.gene061233:CDS 40.0%
! AGTGAGATCAGAAGAGGTAT+TGG - chr8.3:5892170-5892189 None:intergenic 40.0%
! CACGCCTCAATTTGAAGTAT+CGG - chr8.3:5892460-5892479 None:intergenic 40.0%
! CCACCAATTTCACACTTTTC+AGG + chr8.3:5891419-5891438 MS.gene061233:CDS 40.0%
! CCTGAAAAGTGTGAAATTGG+TGG - chr8.3:5891422-5891441 None:intergenic 40.0%
! TCAAAGGTGGCCTTAAGATA+TGG + chr8.3:5893862-5893881 MS.gene061233:CDS 40.0%
! TGTCCCTGAATCATTTTCCA+AGG + chr8.3:5893345-5893364 MS.gene061233:CDS 40.0%
!! AAGGCCTTCTAGAATATGCA+TGG + chr8.3:5893128-5893147 MS.gene061233:CDS 40.0%
!! AGCACCGATACTTCAAATTG+AGG + chr8.3:5892453-5892472 MS.gene061233:intron 40.0%
!! GACTACCTCTAAAGTCTACT+TGG + chr8.3:5894355-5894374 MS.gene061233:CDS 40.0%
!! TATGGTGCTGTTGTTGAGAT+AGG + chr8.3:5891862-5891881 MS.gene061233:CDS 40.0%
AAGGCCACCTTTGATGAGTT+TGG - chr8.3:5893856-5893875 None:intergenic 45.0%
AGGGACACGATATTGTGTTG+AGG + chr8.3:5894326-5894345 MS.gene061233:CDS 45.0%
ATAAGAGAGAGAGCCTCAGT+TGG - chr8.3:5894905-5894924 None:intergenic 45.0%
ATAGCAGGAGAAAGCTATGC+TGG + chr8.3:5892382-5892401 MS.gene061233:CDS 45.0%
ATGGCAGACTACCTGTGATA+GGG + chr8.3:5894307-5894326 MS.gene061233:CDS 45.0%
CAATATCGTGTCCCTATCAC+AGG - chr8.3:5894321-5894340 None:intergenic 45.0%
CCAATAAACCTCTCCTTCTC+TGG + chr8.3:5891513-5891532 MS.gene061233:CDS 45.0%
CCAGAGAAGGAGAGGTTTAT+TGG - chr8.3:5891516-5891535 None:intergenic 45.0%
CTGTCAATGAAGATCATGGG+AGG + chr8.3:5891450-5891469 MS.gene061233:CDS 45.0%
GAGAAGGAGAGGTTTATTGG+AGG - chr8.3:5891513-5891532 None:intergenic 45.0%
GCATCCAGGTCCTAATTCAA+AGG - chr8.3:5891830-5891849 None:intergenic 45.0%
GGATGCTCCTCAATTGGATA+TGG + chr8.3:5891844-5891863 MS.gene061233:CDS 45.0%
GTTGCCTTTGAATTAGGACC+TGG + chr8.3:5891823-5891842 MS.gene061233:intron 45.0%
TAGGGAGATGATCTCCAGTT+AGG - chr8.3:5894937-5894956 None:intergenic 45.0%
TCCTGCTATGAAAAAGTCCC+TGG - chr8.3:5892371-5892390 None:intergenic 45.0%
! ATGAATGGAATGCAGGTTGG+AGG + chr8.3:5894806-5894825 MS.gene061233:intron 45.0%
! CTCGGAAAGGTATAGTCCAT+TGG - chr8.3:5891699-5891718 None:intergenic 45.0%
!! GGAAGGATAGTGGAGTATGA+AGG + chr8.3:5894827-5894846 MS.gene061233:CDS 45.0%
!! TATCCAATTGAGGAGCATCC+AGG - chr8.3:5891844-5891863 None:intergenic 45.0%
!! TGTGAAATTGGTGGTGTCGA+AGG - chr8.3:5891413-5891432 None:intergenic 45.0%
!!! TCCAGGGACTTTTTCATAGC+AGG + chr8.3:5892367-5892386 MS.gene061233:CDS 45.0%
CTGCAAGCTGAGGGATATAG+TGG - chr8.3:5892647-5892666 None:intergenic 50.0%
GATGGCAGACTACCTGTGAT+AGG + chr8.3:5894306-5894325 MS.gene061233:CDS 50.0%
GCCTCTCAACAAACCAACTG+AGG + chr8.3:5894889-5894908 MS.gene061233:CDS 50.0%
TATGTGACAGTGAGAGGAGC+TGG + chr8.3:5894857-5894876 MS.gene061233:CDS 50.0%
! ATGGAATGCAGGTTGGAGGA+AGG + chr8.3:5894810-5894829 MS.gene061233:intron 50.0%
! ATGGGAGGGCCCTTTTCTAT+TGG + chr8.3:5891465-5891484 MS.gene061233:CDS 50.0%
!! GCCTCAGTTGGTTTGTTGAG+AGG - chr8.3:5894893-5894912 None:intergenic 50.0%
!! TGAGTTTGGTGTAGATGGGC+AGG - chr8.3:5893842-5893861 None:intergenic 50.0%
AGTGAGAGGAGCTGGTCACT+TGG + chr8.3:5894865-5894884 MS.gene061233:CDS 55.0%
CACCTCCATTGAGCCAGAGA+AGG - chr8.3:5891529-5891548 None:intergenic 55.0%
CCATTGAGCCAGAGAAGGAG+AGG - chr8.3:5891524-5891543 None:intergenic 55.0%
GGACCTGGATGCTCCTCAAT+TGG + chr8.3:5891838-5891857 MS.gene061233:intron 55.0%
GTGGAGTCACCCATTGGAGT+TGG + chr8.3:5892133-5892152 MS.gene061233:CDS 55.0%
! CCTCTCCTTCTCTGGCTCAA+TGG + chr8.3:5891521-5891540 MS.gene061233:CDS 55.0%
! CTCCTTCTCTGGCTCAATGG+AGG + chr8.3:5891524-5891543 MS.gene061233:CDS 55.0%
! GCAGGTTGGAGGAAGGATAG+TGG + chr8.3:5894817-5894836 MS.gene061233:intron 55.0%
! GGTGGTGTCGAAGGTTGTCC+TGG - chr8.3:5891404-5891423 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 5891272 5894970 5891272 ID=MS.gene061233
chr8.3 mRNA 5891272 5894970 5891272 ID=MS.gene061233.t1;Parent=MS.gene061233
chr8.3 exon 5891272 5891545 5891272 ID=MS.gene061233.t1.exon1;Parent=MS.gene061233.t1
chr8.3 CDS 5891272 5891545 5891272 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5891839 5891946 5891839 ID=MS.gene061233.t1.exon2;Parent=MS.gene061233.t1
chr8.3 CDS 5891839 5891946 5891839 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5892116 5892211 5892116 ID=MS.gene061233.t1.exon3;Parent=MS.gene061233.t1
chr8.3 CDS 5892116 5892211 5892116 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5892311 5892403 5892311 ID=MS.gene061233.t1.exon4;Parent=MS.gene061233.t1
chr8.3 CDS 5892311 5892403 5892311 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5892643 5892731 5892643 ID=MS.gene061233.t1.exon5;Parent=MS.gene061233.t1
chr8.3 CDS 5892643 5892731 5892643 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5893091 5893366 5893091 ID=MS.gene061233.t1.exon6;Parent=MS.gene061233.t1
chr8.3 CDS 5893091 5893366 5893091 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5893547 5893707 5893547 ID=MS.gene061233.t1.exon7;Parent=MS.gene061233.t1
chr8.3 CDS 5893547 5893707 5893547 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5893797 5893892 5893797 ID=MS.gene061233.t1.exon8;Parent=MS.gene061233.t1
chr8.3 CDS 5893797 5893892 5893797 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5894296 5894401 5894296 ID=MS.gene061233.t1.exon9;Parent=MS.gene061233.t1
chr8.3 CDS 5894296 5894401 5894296 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
chr8.3 exon 5894821 5894970 5894821 ID=MS.gene061233.t1.exon10;Parent=MS.gene061233.t1
chr8.3 CDS 5894821 5894970 5894821 ID=cds.MS.gene061233.t1;Parent=MS.gene061233.t1
Gene Sequence

>MS.gene061233

ATGAATGTTTTTCTGTTTGTAGTCCAGTTCCTAATATGTTTCTTTGTTTTAACTACTACCACTTCATTGTTCATTAAAGCATCTGAAATAAATGTTGGAAGTTATGAAACTGATAGAATAAGTGATCTACCAGGACAACCTTCGACACCACCAATTTCACACTTTTCAGGTTACATCACTGTCAATGAAGATCATGGGAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTCAACCCTCCAATAAACCTCTCCTTCTCTGGCTCAATGGAGGTGATCTCTCATCATTTCATTTTTGTAACTAATTATTATTATTATTAGTAAATGTTAGTGGTTAATTTGCTAGGGGAGTATGAATTTATTAGCAACATGGATTGAACCTTGAACCTCTTTCATAATACTTTTTCAACTTCTCAATCTATGCCAATGGACTATACCTTTCCGAGACTTAATACTTATTTTTATAACATATAGTTTTTTATGTATGGTTGTAGAGATCCAACTCTAGTCATATTTATTTATTTAGTGATGCTACATTTCATTTTGTAATGTTGCCTTTGAATTAGGACCTGGATGCTCCTCAATTGGATATGGTGCTGTTGTTGAGATAGGACCTCTTTTAGTCAACCAAAATGGTGAAGGACTAACATTCAACCCATACTCTTGGAATCAAGGTTTATATTTTCTTCCCAATTTTTTACTATGAAGTATAGTTTATAGTATATAGTATATGTTTGTCTTGTTTGAGTATCTGTTTGTATCCAATTATTGCTGTGCCAATAAATGCTGCAAAAAGAATAATGATACTAATTTTGCTTACTTGAAAATTGTGAACTTATGCAGAAGCAAATTTGTTATTTGTGGAGTCACCCATTGGAGTTGGTTTTTCTTACACCAATACCTCTTCTGATCTCACTATTTTAGAGGATCATTTTGTAGGTGAGTTTTCATTGTATAAGATAAGATCATCATCTAATCTAATTGTGTTGATTTTGTTAAAAGTCACCGTAATATTTAATTACAAACTACTTGAATCAGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTTCCACAGTTTAAATCCAGGGACTTTTTCATAGCAGGAGAAAGCTATGCTGGTTAGTTTTATAACTAATTATAACTATGATCTCTTTTCGTCGCAAACTTAGCACCGATACTTCAAATTGAGGCGTGTCCTGTATGTGCAATGTGTATCTATATCTCTATTTTCTCAAATTATTTGAGTTATCATGTGTCAGTATCAGTGTTGTGTCCGTGTATGTCTTAGTGCTTCATAGTTCGCTACTAGCATATACTATTGTATAATAACCACATTTTTATTGCAACTATTTTTCAGGCCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGACAGAAACAAAGATAGAAGCAAAAACACCTTTATTAATCTTAAAGGTTTTATTGTAAGTAAATCATCCTTAACCAAAATAAAGAATGGAAAATTAAGGAGATTAAGGACATTTTGTTAGAACTTTTTTTCAAATAAATAATTTTTAGTTCTCATTTATTTGTTATAAATTTTTTGAAATAAACCTAAAAACTATTTAAGAAAGCTATTTTGAACATCTTCTCTTGAAAATTGCATTTGATAGATGATTTTTAAATATTTGACTTTTATCATGACAAACAAACACAAAATAGCTTCTGCTATTTTGGAAAATCTCTAAAAAAATAATCTAAATTTTTGAATACCAGAATCACTTTTTTATAACACAACAAACAGCCCTAAATATGCACCCCTAAATGATTTTTATTTTTTCAGGTAGGGAATCCAGAAACTGAAGATTACTATGACAACAAAGGCCTTCTAGAATATGCATGGAGTCATGCAGTTATATCAGACCAGCAATATGAGAAAGCAAAACAAGTTTGTGATTTTAAACAATCTCAATGGTCTAATGAGTGCAATCAGGTCATGAGTGAAGTTTTCCATGATTACTCAGAAATTGATATATACAACATTTATGCACCAGCATGTCATTCAAACAGTACATCCTCAGTGACAGTAACAAATAATGTCCCTGAATCATTTTCCAAGGTAGATAACTAATGTCACAAATCTATAGATTCTAAATGATAGCACTGTATTAACTAGTATATATTTGAATTGCATTAAATATTGAAGTTGATATCGAAATTTGATGTTAAATTTGCGTGTCAAAATATCATTTATGAAACAATATTTGTTTAAGTTAGAGGGAAAATTTGGTTATTGCAGGTGAAAAATGATTATAGAATGAAGAGGATGAGAATTTTTGGGGGCTATGATCCTTGTTATTCCACATATGCAGAAGAATTTTTCAACAGGGTAGATGTTCAATCATCTTTTCATGCAAATACTATAAAAGAAAACAATAACATAGCATGGAAGGTTTGCAAGTAAGCACTACAATTTGATAGATCCCTTAATTGATAATTTATTCTATAATCTATTGAATACTAATTTCCATCTATGTCTAATTTTTCAGTGATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCTGTCCTGCCCATCTACACCAAACTCATCAAAGGTGGCCTTAAGATATGGATTTACAGGTATATATCTCTTACTTATACTCTAAATTAATGTCGTTAGGATAGCCTTAAGACTGAATAGATATATATTGTGAGTGTAAAAAATGTTTACTTATCCTAACCATATAGATTGTGTATTTTTACTATCTTTTTTTTTTTTTTGAGGGAGTATTTTTACTATCTCATCTTTATAGATAAGGATCCATATTGTTTATGGACCAAGTGCAAAGTGAAAAATGCATTTATGACTTTATGGTCACATGCTTTTAAATTCTAAAATTAATAGAGGTAGTTGCATGCATAGAATTGTTAGTAGCTTTCGGTGAAAGGGTTACGTACTCATGTGATTCAATTTTTGATTGATGAATTGAATTGATGAGATTAATGAGTATGTTTGTTTGTACCTTGTGGAATGAATTAATAGTGGAGATGCAGATGGCAGACTACCTGTGATAGGGACACGATATTGTGTTGAGGCTTTAGGACTACCTCTAAAGTCTACTTGGAGATCTTGGTACCATAATAATCAGGTCCTCTATTTATCTTTTTGCCATTGTATAAATTCTTAATTAAAATGAAATCGTAGTATTTTTTATTTATTTTTAATCATTAGAATAAAGAAAAAATATCTTGTAGTATATATTATTGCGCATTTTGATTAGAGAATGAGGAAAATTACAGTGGATAATTGATGAGTTACTTGATTGAGTTTGTGGTGTTTGATAAAATTAATTGTTGAACTAGCGAATAACTATGAATTGACATAAAAAAAATATTTAGTTAATAATTAATTTTTTTTAAAGGAAATAATAATTAATTTCAACTAAGACTTAATGGAGAAAAAGTTGTTACTAAATAAATCTATTTTGATCTTATAAGCTATAAACTATCCGCTGTAAACTCAAAATTTTCTCTCCTCTAAGACTTAATGGATATGAATGGAATGCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGATTGACATATGTGACAGTGAGAGGAGCTGGTCACTTGGTGCCTCTCAACAAACCAACTGAGGCTCTCTCTCTTATTCATTCTTTCCTAACTGGAGATCATCTCCCTACTATACGTCCATGA

Protein sequence

>MS.gene061233.t1

MNVFLFVVQFLICFFVLTTTTSLFIKASEINVGSYETDRISDLPGQPSTPPISHFSGYITVNEDHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNQNGEGLTFNPYSWNQEANLLFVESPIGVGFSYTNTSSDLTILEDHFVAEDAYNFLVNWLQRFPQFKSRDFFIAGESYAGHYIPQLAELIFDRNKDRSKNTFINLKGFIVGNPETEDYYDNKGLLEYAWSHAVISDQQYEKAKQVCDFKQSQWSNECNQVMSEVFHDYSEIDIYNIYAPACHSNSTSSVTVTNNVPESFSKVKNDYRMKRMRIFGGYDPCYSTYAEEFFNRVDVQSSFHANTIKENNNIAWKVCNDSILRTYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRLPVIGTRYCVEALGLPLKSTWRSWYHNNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPTEALSLIHSFLTGDHLPTIRP