AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01382

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01382.t1 MTR_2g012850 95.992 474 13 1 1 474 1 468 0.0 942
MS.gene01382.t1 MTR_4g089155 83.843 458 70 3 21 474 31 488 0.0 798
MS.gene01382.t1 MTR_2g012860 76.987 478 104 3 1 474 1 476 0.0 767
MS.gene01382.t1 MTR_4g122950 51.685 445 202 6 40 473 37 479 2.61e-165 475
MS.gene01382.t1 MTR_4g122960 50.113 443 210 6 40 473 37 477 3.85e-160 462
MS.gene01382.t1 MTR_4g075150 50.909 440 203 6 39 472 32 464 1.82e-159 460
MS.gene01382.t1 MTR_4g075150 50.913 438 204 5 39 472 32 462 5.56e-159 459
MS.gene01382.t1 MTR_7g013790 47.489 438 227 2 37 473 31 466 2.35e-146 427
MS.gene01382.t1 MTR_1g095560 47.273 440 214 7 40 473 31 458 2.40e-139 408
MS.gene01382.t1 MTR_3g079570 47.032 438 206 7 40 473 77 492 2.19e-135 399
MS.gene01382.t1 MTR_3g079600 47.500 440 205 7 40 473 74 493 7.70e-135 398
MS.gene01382.t1 MTR_1g095540 45.909 440 220 7 40 473 31 458 5.32e-134 395
MS.gene01382.t1 MTR_3g034290 45.538 437 220 5 40 474 73 493 1.32e-133 395
MS.gene01382.t1 MTR_2g062990 44.191 439 232 6 37 472 35 463 9.73e-133 392
MS.gene01382.t1 MTR_1g021010 46.682 437 206 8 42 474 76 489 9.98e-133 392
MS.gene01382.t1 MTR_1g095560 44.492 472 212 9 40 473 31 490 1.03e-132 392
MS.gene01382.t1 MTR_3g079560 46.119 438 211 8 40 473 76 492 1.10e-131 390
MS.gene01382.t1 MTR_2g063000 43.864 440 230 9 39 472 36 464 1.33e-130 387
MS.gene01382.t1 MTR_0003s0560 46.560 436 215 6 40 474 72 490 2.43e-130 387
MS.gene01382.t1 MTR_2g081620 43.722 446 233 8 37 474 36 471 4.33e-130 385
MS.gene01382.t1 MTR_3g079590 45.853 434 212 7 40 470 76 489 7.49e-130 385
MS.gene01382.t1 MTR_3g079620 45.067 446 212 8 40 473 76 500 1.16e-129 385
MS.gene01382.t1 MTR_1g020090 46.101 436 207 7 39 471 87 497 1.49e-129 385
MS.gene01382.t1 MTR_2g062980 44.191 439 232 7 37 472 35 463 7.08e-128 380
MS.gene01382.t1 MTR_1g021020 44.181 464 221 8 14 474 62 490 1.47e-126 377
MS.gene01382.t1 MTR_3g079630 44.072 447 215 8 40 473 76 500 5.08e-121 363
MS.gene01382.t1 MTR_5g072570 40.890 472 254 7 13 473 6 463 5.26e-118 354
MS.gene01382.t1 MTR_3g090130 41.892 444 238 7 39 473 26 458 6.44e-117 351
MS.gene01382.t1 MTR_3g090150 40.449 445 245 6 39 473 31 465 1.38e-114 346
MS.gene01382.t1 MTR_2g063000 40.868 438 215 10 39 472 36 433 1.29e-113 342
MS.gene01382.t1 MTR_2g449850 39.956 458 245 10 28 473 25 464 3.73e-107 326
MS.gene01382.t1 MTR_7g021130 40.498 442 236 9 42 471 31 457 1.99e-105 322
MS.gene01382.t1 MTR_3g434850 39.462 446 238 9 40 472 29 455 2.00e-104 319
MS.gene01382.t1 MTR_1g040370 39.359 437 210 7 40 471 29 415 1.56e-103 315
MS.gene01382.t1 MTR_8g099930 39.286 448 243 10 40 473 32 464 9.51e-103 315
MS.gene01382.t1 MTR_3g034290 44.886 352 177 4 40 390 73 408 1.09e-102 313
MS.gene01382.t1 MTR_3g498755 40.000 450 239 11 40 473 13 447 2.34e-102 313
MS.gene01382.t1 MTR_0003s0560 51.969 254 120 2 40 293 72 323 3.63e-84 263
MS.gene01382.t1 MTR_8g011350 34.183 471 258 15 41 467 30 492 2.58e-74 242
MS.gene01382.t1 MTR_7g051430 32.617 512 272 16 4 467 6 492 3.65e-73 239
MS.gene01382.t1 MTR_1g102130 33.036 448 245 11 36 471 86 490 9.50e-71 233
MS.gene01382.t1 MTR_7g080180 32.495 477 268 16 41 469 27 497 3.64e-69 229
MS.gene01382.t1 MTR_8g011350 33.110 447 247 15 41 443 30 468 8.71e-64 214
MS.gene01382.t1 MTR_4g021520 32.805 442 263 16 42 465 40 465 4.68e-62 209
MS.gene01382.t1 MTR_2g018630 32.118 439 270 16 41 465 36 460 2.13e-57 197
MS.gene01382.t1 MTR_4g021510 32.200 441 261 16 42 462 39 461 1.12e-56 195
MS.gene01382.t1 MTR_7g080180 31.166 446 250 16 41 439 27 462 1.14e-56 195
MS.gene01382.t1 MTR_7g051430 32.258 434 222 15 4 390 6 414 1.54e-56 193
MS.gene01382.t1 MTR_4g021535 32.127 442 266 17 42 465 36 461 1.70e-56 194
MS.gene01382.t1 MTR_3g100420 30.889 450 277 15 40 465 52 491 1.72e-55 192
MS.gene01382.t1 MTR_4g021490 31.696 448 260 18 42 465 40 465 2.03e-55 192
MS.gene01382.t1 MTR_4g021530 31.674 442 268 16 42 465 40 465 2.16e-55 192
MS.gene01382.t1 MTR_4g021520 32.840 405 239 15 42 429 40 428 8.34e-54 186
MS.gene01382.t1 MTR_4g021500 32.135 445 264 17 42 466 40 466 3.63e-53 192
MS.gene01382.t1 MTR_4g021500 29.070 430 264 15 48 465 482 882 1.09e-46 173
MS.gene01382.t1 MTR_4g021500 32.135 445 264 17 42 466 40 466 5.19e-53 192
MS.gene01382.t1 MTR_4g021500 29.817 436 271 15 48 465 482 900 1.50e-49 182
MS.gene01382.t1 MTR_2g018590 29.530 447 279 15 41 465 32 464 8.48e-53 185
MS.gene01382.t1 MTR_2g018600 29.530 447 278 16 41 465 33 464 1.30e-51 181
MS.gene01382.t1 MTR_5g021570 82.692 104 6 1 193 296 270 361 5.29e-50 176
MS.gene01382.t1 MTR_3g045770 29.302 430 271 15 41 454 26 438 7.80e-49 174
MS.gene01382.t1 MTR_4g057570 27.079 469 260 15 31 468 73 490 3.41e-43 159
MS.gene01382.t1 MTR_2g009200 28.966 435 250 16 35 448 21 417 3.72e-42 155
MS.gene01382.t1 MTR_4g021535 28.864 440 236 16 42 465 36 414 1.69e-41 153
MS.gene01382.t1 MTR_0075s0010 29.333 375 182 12 39 404 5 305 9.51e-41 149
MS.gene01382.t1 MTR_1g094155 28.671 429 264 12 52 467 87 486 1.21e-40 152
MS.gene01382.t1 MTR_4g057585 26.667 435 276 13 47 467 87 492 6.71e-40 150
MS.gene01382.t1 MTR_2g018630 30.659 349 221 13 125 465 20 355 8.19e-39 144
MS.gene01382.t1 MTR_1g050545 27.378 431 266 12 53 467 81 480 1.15e-38 147
MS.gene01382.t1 MTR_2g095730 26.047 430 280 13 52 468 91 495 1.17e-38 147
MS.gene01382.t1 MTR_2g095750 26.977 430 283 12 47 468 92 498 1.82e-38 146
MS.gene01382.t1 MTR_4g057595 26.107 429 275 12 52 467 94 493 2.76e-38 146
MS.gene01382.t1 MTR_4g057600 25.400 437 264 12 55 468 95 492 2.64e-35 137
MS.gene01382.t1 MTR_5g097180 26.636 428 259 15 57 466 43 433 8.44e-33 130
MS.gene01382.t1 MTR_4g084710 26.097 433 255 16 57 466 45 435 3.80e-31 125
MS.gene01382.t1 MTR_2g095710 24.416 471 284 17 17 468 64 481 6.21e-27 113
MS.gene01382.t1 MTR_4g056520 24.169 451 278 18 58 472 36 458 6.14e-23 101
MS.gene01382.t1 MTR_1g051175 51.087 92 42 2 49 139 20 109 2.25e-19 88.6
MS.gene01382.t1 MTR_2g084530 25.517 435 264 16 58 458 36 444 1.87e-15 79.0
MS.gene01382.t1 MTR_7g100560 24.281 313 155 9 48 350 65 305 3.30e-15 77.0
MS.gene01382.t1 MTR_4g122970 56.000 50 21 1 40 88 38 87 2.10e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01382.t1 AT1G11080 66.318 478 152 3 6 474 15 492 0.0 659
MS.gene01382.t1 AT1G11080 66.318 478 152 3 6 474 15 492 0.0 659
MS.gene01382.t1 AT1G61130 67.727 440 131 3 40 474 30 463 0.0 629
MS.gene01382.t1 AT4G15100 65.632 451 148 2 31 474 34 484 0.0 608
MS.gene01382.t1 AT5G08260 50.552 453 210 6 30 474 33 479 1.10e-157 456
MS.gene01382.t1 AT4G30610 48.284 437 220 5 40 473 31 464 2.68e-152 442
MS.gene01382.t1 AT5G23210 48.444 450 212 6 40 472 50 496 1.33e-150 439
MS.gene01382.t1 AT2G24000 48.624 436 211 8 39 467 28 457 1.83e-149 434
MS.gene01382.t1 AT3G17180 48.559 451 213 9 36 473 33 477 3.45e-148 432
MS.gene01382.t1 AT2G24010 46.697 439 221 4 37 473 26 453 1.17e-146 427
MS.gene01382.t1 AT2G24010 44.934 454 222 5 37 473 26 468 2.41e-141 414
MS.gene01382.t1 AT3G02110 43.949 471 253 4 7 471 6 471 4.63e-141 413
MS.gene01382.t1 AT2G35780 47.086 429 213 6 40 465 28 445 8.21e-139 407
MS.gene01382.t1 AT3G07990 46.364 440 218 7 40 473 32 459 2.55e-136 400
MS.gene01382.t1 AT3G63470 45.872 436 218 5 40 473 80 499 3.23e-135 399
MS.gene01382.t1 AT2G24010 43.158 475 217 6 41 473 1 464 5.95e-135 397
MS.gene01382.t1 AT4G30810 45.890 438 227 6 39 474 35 464 3.64e-134 396
MS.gene01382.t1 AT5G23210 48.276 406 190 6 40 428 50 452 7.15e-134 394
MS.gene01382.t1 AT3G17180 48.020 404 192 8 36 427 33 430 2.92e-131 387
MS.gene01382.t1 AT2G35770 43.187 477 240 11 4 473 8 460 1.27e-128 381
MS.gene01382.t1 AT5G23210 44.802 404 203 6 86 472 1 401 2.82e-119 355
MS.gene01382.t1 AT5G23210 44.949 396 198 6 94 472 8 400 6.40e-118 352
MS.gene01382.t1 AT3G52020 42.141 439 233 10 40 473 78 500 2.69e-113 343
MS.gene01382.t1 AT2G12480 41.535 443 237 10 39 472 29 458 1.04e-112 340
MS.gene01382.t1 AT3G52000 41.043 441 236 10 38 473 60 481 1.17e-109 333
MS.gene01382.t1 AT2G05850 38.914 442 245 8 40 473 62 486 1.40e-109 333
MS.gene01382.t1 AT1G43780 40.045 447 243 9 39 471 35 470 4.16e-109 332
MS.gene01382.t1 AT5G42240 40.225 445 246 7 39 472 30 465 4.59e-109 332
MS.gene01382.t1 AT2G33530 42.152 446 229 10 40 471 32 462 3.59e-108 329
MS.gene01382.t1 AT1G28110 41.928 446 232 10 38 471 28 458 1.91e-107 327
MS.gene01382.t1 AT1G28110 41.928 446 232 10 38 471 28 458 1.91e-107 327
MS.gene01382.t1 AT2G12480 39.367 442 224 8 39 472 29 434 1.60e-104 319
MS.gene01382.t1 AT3G52010 38.717 452 249 10 31 473 54 486 1.77e-104 320
MS.gene01382.t1 AT5G42230 38.876 445 250 8 40 472 27 461 6.12e-104 318
MS.gene01382.t1 AT5G42230 38.876 445 250 8 40 472 27 461 6.12e-104 318
MS.gene01382.t1 AT2G24010 42.779 367 182 5 41 390 1 356 2.44e-103 313
MS.gene01382.t1 AT2G12480 38.914 442 224 8 39 472 29 432 1.19e-102 314
MS.gene01382.t1 AT5G23210 44.318 352 176 6 94 428 8 356 4.83e-101 307
MS.gene01382.t1 AT2G12480 39.052 443 223 9 39 472 29 433 5.41e-101 310
MS.gene01382.t1 AT2G24000 38.568 433 196 12 39 467 28 394 1.52e-98 302
MS.gene01382.t1 AT4G12910 34.261 467 261 13 41 467 34 494 6.85e-77 249
MS.gene01382.t1 AT3G25420 33.689 469 265 13 41 468 29 492 1.19e-76 248
MS.gene01382.t1 AT4G12910 32.944 428 242 12 41 429 34 455 3.11e-64 215
MS.gene01382.t1 AT3G56540 61.538 156 59 1 40 195 78 232 5.03e-60 198
MS.gene01382.t1 AT1G33540 31.333 450 280 16 37 468 24 462 9.67e-59 201
MS.gene01382.t1 AT2G22990 30.856 444 265 14 37 468 18 431 1.43e-57 196
MS.gene01382.t1 AT2G22920 30.248 443 267 13 37 467 20 432 1.62e-57 196
MS.gene01382.t1 AT1G33540 31.616 427 264 15 59 468 4 419 6.95e-57 194
MS.gene01382.t1 AT3G12203 30.474 443 265 14 37 468 4 414 9.19e-57 194
MS.gene01382.t1 AT3G12203 30.474 443 265 14 37 468 25 435 1.73e-56 194
MS.gene01382.t1 AT1G73270 30.787 445 264 15 37 469 28 440 1.35e-55 191
MS.gene01382.t1 AT1G73270 30.787 445 264 15 37 469 28 440 1.66e-55 191
MS.gene01382.t1 AT1G73280 30.682 440 261 14 41 468 32 439 3.49e-55 190
MS.gene01382.t1 AT1G73300 30.493 446 262 14 37 468 28 439 3.57e-55 190
MS.gene01382.t1 AT1G73300 30.493 446 262 14 37 468 28 439 3.57e-55 190
MS.gene01382.t1 AT3G10450 31.306 444 261 15 37 468 24 435 3.86e-54 187
MS.gene01382.t1 AT1G73290 30.909 440 266 13 37 468 27 436 5.07e-54 187
MS.gene01382.t1 AT2G22970 30.889 450 247 16 41 468 24 431 2.45e-53 185
MS.gene01382.t1 AT2G22990 31.190 420 248 13 37 444 18 408 3.24e-53 184
MS.gene01382.t1 AT2G22990 31.116 421 249 13 37 445 18 409 3.37e-53 186
MS.gene01382.t1 AT3G12220 31.264 451 256 19 35 468 20 433 9.30e-53 184
MS.gene01382.t1 AT2G23010 29.325 474 284 14 7 468 1 435 1.06e-52 184
MS.gene01382.t1 AT5G36180 30.444 450 257 16 37 468 28 439 3.58e-52 182
MS.gene01382.t1 AT5G09640 30.088 452 286 15 37 468 22 463 3.63e-52 183
MS.gene01382.t1 AT2G23010 29.114 474 285 14 7 468 1 435 4.72e-52 182
MS.gene01382.t1 AT2G22990 30.856 444 256 16 37 468 18 422 7.55e-52 181
MS.gene01382.t1 AT1G73310 31.011 445 261 15 37 468 28 439 9.70e-52 181
MS.gene01382.t1 AT2G23000 28.924 446 281 13 33 468 16 435 1.05e-51 181
MS.gene01382.t1 AT2G23000 28.924 446 281 13 33 468 16 435 1.05e-51 181
MS.gene01382.t1 AT2G22980 30.752 439 258 13 41 468 25 428 2.68e-51 180
MS.gene01382.t1 AT3G12203 30.318 409 243 13 70 468 1 377 3.34e-51 178
MS.gene01382.t1 AT3G12230 29.148 446 272 16 35 468 20 433 5.99e-51 179
MS.gene01382.t1 AT2G22920 30.123 405 243 11 37 430 20 395 1.32e-50 177
MS.gene01382.t1 AT3G12240 29.621 449 270 20 33 468 19 434 2.48e-50 177
MS.gene01382.t1 AT3G10450 31.116 421 247 14 59 468 4 392 3.10e-50 176
MS.gene01382.t1 AT2G22970 30.841 428 233 15 41 446 24 410 8.98e-50 176
MS.gene01382.t1 AT2G22970 30.679 427 233 15 41 445 24 409 2.55e-49 174
MS.gene01382.t1 AT3G10450 30.879 421 248 14 37 445 24 413 9.81e-49 172
MS.gene01382.t1 AT3G12220 31.455 426 239 18 59 468 15 403 1.19e-48 172
MS.gene01382.t1 AT2G22980 30.843 415 244 11 41 445 25 406 8.22e-48 170
MS.gene01382.t1 AT1G73290 30.673 401 242 11 37 430 27 398 2.00e-47 169
MS.gene01382.t1 AT2G22980 31.084 415 241 12 41 444 25 405 2.02e-47 169
MS.gene01382.t1 AT1G73310 30.732 410 240 13 37 434 28 405 5.17e-46 166
MS.gene01382.t1 AT3G45010 28.833 437 280 12 47 474 92 506 5.96e-45 164
MS.gene01382.t1 AT3G10450 30.653 398 234 13 59 445 4 370 7.12e-45 161
MS.gene01382.t1 AT1G73290 34.328 268 166 6 37 297 27 291 4.70e-42 152
MS.gene01382.t1 AT5G22980 29.439 428 263 15 52 468 95 494 3.56e-41 154
MS.gene01382.t1 AT2G22920 34.701 268 159 8 37 293 20 282 6.74e-41 149
MS.gene01382.t1 AT1G73280 33.955 268 161 8 41 297 32 294 3.34e-40 149
MS.gene01382.t1 AT3G10410 28.704 432 266 16 47 465 90 492 8.88e-40 150
MS.gene01382.t1 AT2G22970 35.448 268 148 10 41 293 24 281 2.89e-38 142
MS.gene01382.t1 AT2G22990 29.565 345 208 11 130 468 2 317 3.25e-37 139
MS.gene01382.t1 AT1G73280 29.345 351 211 11 124 468 18 337 4.51e-37 139
MS.gene01382.t1 AT2G22990 29.565 345 208 11 130 468 2 317 1.47e-36 137
MS.gene01382.t1 AT2G22980 37.445 227 128 6 41 259 25 245 3.91e-36 137
MS.gene01382.t1 AT3G12220 34.252 254 148 8 35 278 20 264 2.47e-35 135
MS.gene01382.t1 AT5G36180 29.412 357 203 13 124 468 18 337 1.38e-34 132
MS.gene01382.t1 AT5G36180 29.412 357 203 13 124 468 18 337 1.38e-34 132
MS.gene01382.t1 AT1G73280 29.155 343 206 11 132 468 1 312 2.09e-34 131
MS.gene01382.t1 AT5G36180 29.341 334 188 12 124 445 18 315 4.83e-31 122
MS.gene01382.t1 AT1G15000 27.002 437 267 13 48 468 24 424 5.67e-31 124
MS.gene01382.t1 AT1G73310 29.653 317 186 10 124 434 18 303 2.54e-28 115
MS.gene01382.t1 AT5G36180 29.338 317 177 11 124 429 18 298 2.90e-28 115
MS.gene01382.t1 AT2G22980 29.283 321 189 9 130 445 2 289 3.19e-28 114
MS.gene01382.t1 AT5G22960 33.721 172 90 6 47 216 25 174 3.61e-23 97.1
MS.gene01382.t1 AT2G22920 27.027 259 160 7 213 468 22 254 1.45e-22 97.1
MS.gene01382.t1 AT2G27920 25.342 438 269 15 58 460 37 451 3.13e-22 99.4
MS.gene01382.t1 AT2G27920 23.990 396 247 13 95 458 4 377 3.13e-15 77.8
MS.gene01382.t1 AT2G22960 31.655 139 90 4 331 468 48 182 2.44e-13 68.9

Find 105 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATAAGCTTCTTGTAAAT+TGG 0.119064 2.2:+69586340 None:intergenic
TTCTTCACCACCTTTCTTCT+TGG 0.202874 2.2:-69585623 MS.gene01382:CDS
TATTGATCTAAAGGGCATTT+TGG 0.207860 2.2:-69587848 MS.gene01382:intron
TCTTCATTATAAGAAGTTTC+AGG 0.244359 2.2:+69587696 None:intergenic
AAAACCAATGGTTTGTCTTC+AGG 0.250102 2.2:+69588935 None:intergenic
CTTACATTTGCTACATTTAG+AGG 0.270221 2.2:-69585692 MS.gene01382:CDS
GGATGCTCTTCTGTGGGATA+TGG 0.281309 2.2:-69588573 MS.gene01382:CDS
AAACGATCAATCCATGAAAA+TGG 0.296837 2.2:-69587463 MS.gene01382:CDS
TTTCAGCTGGACTTAGGATT+TGG 0.302156 2.2:-69586321 MS.gene01382:CDS
AGAAGCAAACATGTTATTCT+TGG 0.302955 2.2:-69588312 MS.gene01382:CDS
GCTCTCTCCTGCTATGTAAA+AGG 0.304729 2.2:+69588045 None:intergenic
TGAATTGCTTGGTTTAAAAC+AGG 0.317078 2.2:+69585652 None:intergenic
GATGAAGCACTCATCTTTAA+TGG 0.328835 2.2:-69587439 MS.gene01382:intron
TTTCTTATAGAGATAGGAAA+TGG 0.338230 2.2:-69589117 MS.gene01382:CDS
CTATTGTTTCTTATAGAGAT+AGG 0.343684 2.2:-69589123 MS.gene01382:CDS
AAATAAGCTTCTTGTAAATT+GGG 0.354062 2.2:+69586341 None:intergenic
CAATGGTTTGTCTTCAGGTT+TGG 0.365874 2.2:+69588940 None:intergenic
AACAGCAACGACATATTTAC+TGG 0.366911 2.2:-69586391 MS.gene01382:intron
TTCCCTTCATATTGATCTAA+AGG 0.375816 2.2:-69587857 MS.gene01382:CDS
TGAAGGGCTTTCTGAACATC+TGG 0.387787 2.2:+69586574 None:intergenic
ATGGTCATAATCTAAGGAAT+TGG 0.392950 2.2:-69586543 MS.gene01382:CDS
AAGAATGCTTAAGCTGTATC+TGG 0.392967 2.2:+69585969 None:intergenic
AAACTTCTTATAATGAAGAT+TGG 0.393402 2.2:-69587692 MS.gene01382:CDS
CTATCTCTATAAGAAACAAT+AGG 0.397172 2.2:+69589124 None:intergenic
CCAGTGATGGTCATAATCTA+AGG 0.405053 2.2:-69586549 MS.gene01382:CDS
TTGGAATCTCCTGTTGGAGT+TGG 0.412688 2.2:-69588293 MS.gene01382:CDS
TCCCTTCATATTGATCTAAA+GGG 0.420892 2.2:-69587856 MS.gene01382:CDS
TACAAGAAGCTTATTTCAGC+TGG 0.422358 2.2:-69586334 MS.gene01382:CDS
TTCTTATAGAGATAGGAAAT+GGG 0.423943 2.2:-69589116 MS.gene01382:CDS
GACTTAGGATTTGGCTCTAC+AGG 0.430036 2.2:-69586312 MS.gene01382:intron
TCTTATAATGAAGATTGGTT+AGG 0.433954 2.2:-69587687 MS.gene01382:CDS
GTTGATTTCCAGCACTATGC+TGG 0.441264 2.2:-69589025 MS.gene01382:CDS
TAAGAAAATCCAACTCCAAC+AGG 0.446307 2.2:+69588284 None:intergenic
CTTCATTATAAGAAGTTTCA+GGG 0.447922 2.2:+69587697 None:intergenic
GGACTCCATTGCTTGGTGAT+AGG 0.448946 2.2:+69585940 None:intergenic
CTGTATCTGGTTGATAGAAC+TGG 0.450470 2.2:+69585982 None:intergenic
CAAAGCAGACAGACGTATAG+AGG 0.450749 2.2:+69587502 None:intergenic
TTTGCTACATTTAGAGGAGC+TGG 0.454132 2.2:-69585686 MS.gene01382:CDS
AGCTTATTTCAGCTGGACTT+AGG 0.455901 2.2:-69586327 MS.gene01382:CDS
TCAAATTTAATAACTTCTCA+TGG 0.458488 2.2:-69588500 MS.gene01382:CDS
TCCTAGTTGTGCATATTCAC+TGG 0.461066 2.2:+69588250 None:intergenic
GCATAGTGCTGGAAATCAAC+AGG 0.461642 2.2:+69589028 None:intergenic
GTAAAACAATGCTCTTCCAT+TGG 0.467790 2.2:+69588982 None:intergenic
GGGTGGTTATGATCCATGTT+TGG 0.468140 2.2:-69586626 MS.gene01382:CDS
TGCCCTTTAGATCAATATGA+AGG 0.468960 2.2:+69587854 None:intergenic
TTATTCTTGGAATCTCCTGT+TGG 0.472255 2.2:-69588299 MS.gene01382:CDS
TTTGTCTTCAGGTTTGGTCA+TGG 0.472740 2.2:+69588946 None:intergenic
TAGGAATGGTTGATTATGCT+TGG 0.473229 2.2:-69587668 MS.gene01382:CDS
AAATCAACAGGAGGCTGGCC+AGG 0.482816 2.2:+69589040 None:intergenic
TCACCAAGCAATGGAGTCCT+TGG 0.483793 2.2:-69585936 MS.gene01382:CDS
GAGATAGGAAATGGGGTGGT+GGG 0.484433 2.2:-69589108 MS.gene01382:CDS
TGACTAGATACCAAGGATCA+TGG 0.486990 2.2:-69586647 MS.gene01382:intron
AGAGATAGGAAATGGGGTGG+TGG 0.491660 2.2:-69589109 MS.gene01382:CDS
CCTTAGATTATGACCATCAC+TGG 0.496669 2.2:+69586549 None:intergenic
ATAGCAGGAGAGAGCTATGC+AGG 0.504990 2.2:-69588037 MS.gene01382:intron
GAGTCCTTGGTATCATGAAA+AGG 0.505154 2.2:-69585923 MS.gene01382:CDS
TAATGAAGATTGGTTAGGAA+TGG 0.508794 2.2:-69587682 MS.gene01382:CDS
TCATAACCACCCATGATCCT+TGG 0.512919 2.2:+69586637 None:intergenic
TGACATATCCAGCATAGTGC+TGG 0.515412 2.2:+69589017 None:intergenic
AAGGCTCTTGTTCTGTATGA+AGG 0.515952 2.2:+69588064 None:intergenic
AGGTCCTGGATGCTCTTCTG+TGG 0.521462 2.2:-69588580 MS.gene01382:CDS
GACTAGATACCAAGGATCAT+GGG 0.534210 2.2:-69586646 MS.gene01382:intron
TATGGAGCAACACAAGAGAT+TGG 0.535698 2.2:-69588555 MS.gene01382:CDS
TATCCCACAGAAGAGCATCC+AGG 0.537264 2.2:+69588576 None:intergenic
GCTGGAAATCAACAGGAGGC+TGG 0.540289 2.2:+69589035 None:intergenic
ATGACCATCACTGGCATGAA+GGG 0.542541 2.2:+69586558 None:intergenic
TATGACCATCACTGGCATGA+AGG 0.546655 2.2:+69586557 None:intergenic
TTTAGATCAATATGAAGGGA+AGG 0.549003 2.2:+69587859 None:intergenic
TTTAGTGGACACTGATGGCA+AGG 0.549717 2.2:-69588526 MS.gene01382:CDS
ATGATGAGTTCAGCAAGCTC+TGG 0.554264 2.2:+69587898 None:intergenic
CAACTAGGAGATGACTTCAC+AGG 0.559301 2.2:-69588236 MS.gene01382:intron
TATGACAAGTTTCTACACAT+TGG 0.560723 2.2:-69589176 MS.gene01382:CDS
GGTCCTGGATGCTCTTCTGT+GGG 0.563548 2.2:-69588579 MS.gene01382:CDS
TTTGTGTTGGAATAGGTAAG+TGG 0.569912 2.2:-69585737 MS.gene01382:intron
AAGAATGTAAGTGAATTGCT+TGG 0.572080 2.2:+69585641 None:intergenic
TGGTGATTCTCCAAGAAGAA+AGG 0.577114 2.2:+69585613 None:intergenic
ATACCAAGGACTCCATTGCT+TGG 0.578774 2.2:+69585933 None:intergenic
CCATTAAGCCATAAAACCAA+TGG 0.581362 2.2:+69588923 None:intergenic
GTCACAGTTAATGAAACCAA+TGG 0.581958 2.2:-69588998 MS.gene01382:CDS
GCCCTTTAGATCAATATGAA+GGG 0.582544 2.2:+69587855 None:intergenic
AATAACTTCTCATGGAACAA+AGG 0.583408 2.2:-69588492 MS.gene01382:intron
GGATGGTATCAAGAATATGA+AGG 0.583986 2.2:-69585716 MS.gene01382:CDS
GCAACGACATATTTACTGGA+TGG 0.584704 2.2:-69586387 MS.gene01382:CDS
ACTTTAACAGTAGTGATCCA+TGG 0.585286 2.2:-69587593 MS.gene01382:CDS
GATCTTGTGACTAACTTACC+TGG 0.587538 2.2:-69589058 MS.gene01382:CDS
AAAGCCCTTCATGCCAGTGA+TGG 0.587552 2.2:-69586562 MS.gene01382:CDS
GGTGGGAGAAAATTAAGCTA+TGG 0.587951 2.2:-69589091 MS.gene01382:CDS
CAAACCTGAAGACAAACCAT+TGG 0.588694 2.2:-69588939 MS.gene01382:CDS
TCTTATAGAGATAGGAAATG+GGG 0.595022 2.2:-69589115 MS.gene01382:CDS
TTAGATCAATATGAAGGGAA+GGG 0.606553 2.2:+69587860 None:intergenic
TTAGTGGACACTGATGGCAA+GGG 0.606873 2.2:-69588525 MS.gene01382:CDS
GAATTGCTTGGTTTAAAACA+GGG 0.617175 2.2:+69585653 None:intergenic
ACTTGCCTATCACCAAGCAA+TGG 0.634530 2.2:-69585945 MS.gene01382:CDS
TATAGAGATAGGAAATGGGG+TGG 0.636528 2.2:-69589112 MS.gene01382:CDS
ACCAGTGAATATGCACAACT+AGG 0.646392 2.2:-69588251 MS.gene01382:CDS
TTAGCATAGTCATCCAAACA+TGG 0.653047 2.2:+69586613 None:intergenic
TGAAGATTGTACTCATGGTG+TGG 0.656264 2.2:-69587565 MS.gene01382:CDS
TGTTGGAATAGGTAAGTGGA+TGG 0.657350 2.2:-69585733 MS.gene01382:intron
TCCTTGGTATCATGAAAAGG+AGG 0.657711 2.2:-69585920 MS.gene01382:intron
TTGTTCAGTGGAGACACCGA+CGG 0.662038 2.2:-69586012 MS.gene01382:intron
TAGAACTGGCACTCTACCGT+CGG 0.664010 2.2:+69585996 None:intergenic
TGATTCTCCAAGAAGAAAGG+TGG 0.678026 2.2:+69585616 None:intergenic
ATTTGGGTGACTAGATACCA+AGG 0.692204 2.2:-69586654 MS.gene01382:intron
TAGATACCAAGGATCATGGG+TGG 0.707967 2.2:-69586643 MS.gene01382:CDS
TAGTGCTGGAAATCAACAGG+AGG 0.710495 2.2:+69589031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATATATTATTTGTCT+AGG - chr2.2:69586144-69586163 MS.gene01382:intron 10.0%
!!! AAATAATGCTTTTATTTTTT+TGG - chr2.2:69587041-69587060 MS.gene01382:intron 10.0%
!!! AACTTTTAATTGTATTTAAT+AGG + chr2.2:69587984-69588003 None:intergenic 10.0%
!!! AATAATGCTTTTATTTTTTT+GGG - chr2.2:69587042-69587061 MS.gene01382:intron 10.0%
!!! ACTTTTAATTGTATTTAATA+GGG + chr2.2:69587983-69588002 None:intergenic 10.0%
!!! TTTATTTTTTTTTAATTGGT+GGG - chr2.2:69585944-69585963 MS.gene01382:CDS 10.0%
!! AAAATAAGATTCTTTATACT+TGG + chr2.2:69586999-69587018 None:intergenic 15.0%
!! AAAATGTCAATTTAGATTAA+GGG + chr2.2:69588348-69588367 None:intergenic 15.0%
!! AATTAGTATTGTTAATAAAG+AGG - chr2.2:69588548-69588567 MS.gene01382:CDS 15.0%
!! ACATATATATAAAACATACT+TGG + chr2.2:69586424-69586443 None:intergenic 15.0%
!! ACTAATATATGTTATGTTTA+TGG + chr2.2:69586322-69586341 None:intergenic 15.0%
!! ATAAAAATCATGCAAAAATA+TGG + chr2.2:69588727-69588746 None:intergenic 15.0%
!! ATATATGTCATACTTATATT+AGG + chr2.2:69588971-69588990 None:intergenic 15.0%
!! TAAAATGTCAATTTAGATTA+AGG + chr2.2:69588349-69588368 None:intergenic 15.0%
!!! ACTTCTTCTAATTTTTTTAT+AGG + chr2.2:69587156-69587175 None:intergenic 15.0%
!!! ATTTAAAATGAGACTATATA+CGG - chr2.2:69588601-69588620 MS.gene01382:intron 15.0%
!!! CTTTATTTTTTTTTAATTGG+TGG - chr2.2:69585943-69585962 MS.gene01382:CDS 15.0%
!!! GATTGATCTTTTAATTATTT+TGG + chr2.2:69587929-69587948 None:intergenic 15.0%
!!! TATTTTAACATTTCTCAAAT+AGG + chr2.2:69586003-69586022 None:intergenic 15.0%
!!! TTATTTTTTTTTAATTGGTG+GGG - chr2.2:69585945-69585964 MS.gene01382:CDS 15.0%
!! AAACTTCTTATAATGAAGAT+TGG - chr2.2:69587081-69587100 MS.gene01382:intron 20.0%
!! AAATAAGCTTCTTGTAAATT+GGG + chr2.2:69588435-69588454 None:intergenic 20.0%
!! AAATGTTAAAATAGCGAATT+CGG - chr2.2:69586010-69586029 MS.gene01382:intron 20.0%
!! AAATTGTGTATAAGTTTACT+TGG + chr2.2:69587468-69587487 None:intergenic 20.0%
!! AATTGTGTATAAGTTTACTT+GGG + chr2.2:69587467-69587486 None:intergenic 20.0%
!! ACATATATTAGTATACTTTG+TGG - chr2.2:69586330-69586349 MS.gene01382:CDS 20.0%
!! AGTACAAAAAAGTGAAAAAT+AGG + chr2.2:69588278-69588297 None:intergenic 20.0%
!! ATCAATTAACAATTCTATGT+AGG + chr2.2:69586400-69586419 None:intergenic 20.0%
!! ATCTATTGAAAAAGTTCAAA+TGG + chr2.2:69588684-69588703 None:intergenic 20.0%
!! ATGCAAAAATATGGTTTATA+AGG + chr2.2:69588718-69588737 None:intergenic 20.0%
!! TCAAATTTAATAACTTCTCA+TGG - chr2.2:69586273-69586292 MS.gene01382:intron 20.0%
!! TCAATTAACAATTCTATGTA+GGG + chr2.2:69586399-69586418 None:intergenic 20.0%
!! TTTAGATTGATATATACACA+CGG - chr2.2:69588029-69588048 MS.gene01382:intron 20.0%
!!! AAAAATGATTTGTTTTGTGT+TGG - chr2.2:69589023-69589042 MS.gene01382:CDS 20.0%
!!! ATGTTTTATGATCAATTCAT+GGG + chr2.2:69586835-69586854 None:intergenic 20.0%
!!! ATTGGTCATTTATGTTATTT+TGG - chr2.2:69587663-69587682 MS.gene01382:CDS 20.0%
!!! GATTGATCTTTAAGTTAATT+TGG - chr2.2:69587722-69587741 MS.gene01382:intron 20.0%
!!! TATCTTTGTTTTTTGCATAA+TGG - chr2.2:69586577-69586596 MS.gene01382:CDS 20.0%
!!! TGTTCTTTTTTATTACTTAC+AGG - chr2.2:69586173-69586192 MS.gene01382:intron 20.0%
!!! TTTTATTATGTGTATCATAC+AGG + chr2.2:69586130-69586149 None:intergenic 20.0%
! AAAAATGAAGATTGTACTCA+TGG - chr2.2:69587203-69587222 MS.gene01382:intron 25.0%
! AACAAAATGATCATAGAGTT+CGG - chr2.2:69586070-69586089 MS.gene01382:intron 25.0%
! CTATCTCTATAAGAAACAAT+AGG + chr2.2:69585652-69585671 None:intergenic 25.0%
! CTTCATTATAAGAAGTTTCA+GGG + chr2.2:69587079-69587098 None:intergenic 25.0%
! GAAAACGTTTACAAACTTAA+AGG - chr2.2:69587831-69587850 MS.gene01382:intron 25.0%
! GAAATAAGCTTCTTGTAAAT+TGG + chr2.2:69588436-69588455 None:intergenic 25.0%
! TCTTCATTATAAGAAGTTTC+AGG + chr2.2:69587080-69587099 None:intergenic 25.0%
! TTAGATTGATATATACACAC+GGG - chr2.2:69588030-69588049 MS.gene01382:intron 25.0%
! TTCTTATAGAGATAGGAAAT+GGG - chr2.2:69585657-69585676 MS.gene01382:CDS 25.0%
! TTTCTTATAGAGATAGGAAA+TGG - chr2.2:69585656-69585675 MS.gene01382:CDS 25.0%
!! ACATAAGTCATTTAAGTTCA+AGG - chr2.2:69587690-69587709 MS.gene01382:CDS 25.0%
!! AGCTAGATTTTAAATCTTGT+AGG + chr2.2:69586957-69586976 None:intergenic 25.0%
!! CATGTTTTATGATCAATTCA+TGG + chr2.2:69586836-69586855 None:intergenic 25.0%
!! CTATTGTTTCTTATAGAGAT+AGG - chr2.2:69585650-69585669 MS.gene01382:CDS 25.0%
!! TAACAATGAACTTTTATCCA+TGG - chr2.2:69587407-69587426 MS.gene01382:intron 25.0%
!! TCTTATAATGAAGATTGGTT+AGG - chr2.2:69587086-69587105 MS.gene01382:intron 25.0%
!! TTTCTGTCATATCATTGTTT+TGG + chr2.2:69587802-69587821 None:intergenic 25.0%
!!! ACATAAGTCTTTTAAGTTTG+AGG + chr2.2:69587902-69587921 None:intergenic 25.0%
!!! ATTGTTTTACTGGTTTTTTG+AGG - chr2.2:69585804-69585823 MS.gene01382:intron 25.0%
!!! TCATTGTTTTGGTTAACATA+AGG + chr2.2:69587791-69587810 None:intergenic 25.0%
AAACGATCAATCCATGAAAA+TGG - chr2.2:69587310-69587329 MS.gene01382:intron 30.0%
AAGAATGTAAGTGAATTGCT+TGG + chr2.2:69589135-69589154 None:intergenic 30.0%
AATAACTTCTCATGGAACAA+AGG - chr2.2:69586281-69586300 MS.gene01382:intron 30.0%
AATAGGCTAAATTATACCAG+AGG - chr2.2:69587614-69587633 MS.gene01382:CDS 30.0%
AGAAGCAAACATGTTATTCT+TGG - chr2.2:69586461-69586480 MS.gene01382:intron 30.0%
AGTGATCAAAACAATATCAG+AGG - chr2.2:69587359-69587378 MS.gene01382:intron 30.0%
ATGGTCATAATCTAAGGAAT+TGG - chr2.2:69588230-69588249 MS.gene01382:intron 30.0%
ATTGATCTAACACTTCTTTG+TGG - chr2.2:69588096-69588115 MS.gene01382:CDS 30.0%
CATTTCCATAAAAAACAGTG+AGG + chr2.2:69586365-69586384 None:intergenic 30.0%
GATCATAAAACATGTTATGC+AGG - chr2.2:69586842-69586861 MS.gene01382:intron 30.0%
TAACACTTCTTTGTGGATTT+GGG - chr2.2:69588103-69588122 MS.gene01382:CDS 30.0%
TCCCTTCATATTGATCTAAA+GGG - chr2.2:69586917-69586936 MS.gene01382:intron 30.0%
TCTTATAGAGATAGGAAATG+GGG - chr2.2:69585658-69585677 MS.gene01382:CDS 30.0%
TTAGATCAATATGAAGGGAA+GGG + chr2.2:69586916-69586935 None:intergenic 30.0%
TTCCCTTCATATTGATCTAA+AGG - chr2.2:69586916-69586935 MS.gene01382:intron 30.0%
TTTAGATCAATATGAAGGGA+AGG + chr2.2:69586917-69586936 None:intergenic 30.0%
! AAACTCGTAAATATTTTGCG+AGG - chr2.2:69587508-69587527 MS.gene01382:CDS 30.0%
! CTTACATTTGCTACATTTAG+AGG - chr2.2:69589081-69589100 MS.gene01382:CDS 30.0%
! GAATTGCTTGGTTTAAAACA+GGG + chr2.2:69589123-69589142 None:intergenic 30.0%
! TAATGAAGATTGGTTAGGAA+TGG - chr2.2:69587091-69587110 MS.gene01382:intron 30.0%
! TGAATTGCTTGGTTTAAAAC+AGG + chr2.2:69589124-69589143 None:intergenic 30.0%
! TTTTTATTACTTACAGGTCC+TGG - chr2.2:69586179-69586198 MS.gene01382:intron 30.0%
!! GTACAATCTTCATTTTTCCA+TGG + chr2.2:69587200-69587219 None:intergenic 30.0%
!!! AAGACAAACCATTGGTTTTA+TGG - chr2.2:69585842-69585861 MS.gene01382:intron 30.0%
!!! GATTTGTTTTGTGTTGGAAT+AGG - chr2.2:69589029-69589048 MS.gene01382:CDS 30.0%
!!! GGTAACGATTTTGTTTCTAA+AGG - chr2.2:69588622-69588641 MS.gene01382:intron 30.0%
!!! TATTGATCTAAAGGGCATTT+TGG - chr2.2:69586925-69586944 MS.gene01382:intron 30.0%
!!! TTTTATTTTTTTGGGCAGCT+GGG - chr2.2:69587050-69587069 MS.gene01382:intron 30.0%
AACAGCAACGACATATTTAC+TGG - chr2.2:69588382-69588401 MS.gene01382:intron 35.0%
AAGAATGCTTAAGCTGTATC+TGG + chr2.2:69588807-69588826 None:intergenic 35.0%
ACCAATTATATATGTACGCG+TGG - chr2.2:69588486-69588505 MS.gene01382:intron 35.0%
ACTTTAACAGTAGTGATCCA+TGG - chr2.2:69587180-69587199 MS.gene01382:intron 35.0%
AGTCTTCTTCAAATGACATC+TGG + chr2.2:69587559-69587578 None:intergenic 35.0%
CAAAACAATATCAGAGGAAG+TGG - chr2.2:69587365-69587384 MS.gene01382:intron 35.0%
CCATTAAGCCATAAAACCAA+TGG + chr2.2:69585853-69585872 None:intergenic 35.0%
CTAAAAAAAGTCTCCTCTGA+CGG + chr2.2:69588014-69588033 None:intergenic 35.0%
CTAACACTTCTTTGTGGATT+TGG - chr2.2:69588102-69588121 MS.gene01382:CDS 35.0%
CTTCATACTTGATTGTTCAG+TGG - chr2.2:69588749-69588768 MS.gene01382:intron 35.0%
GCCCTTTAGATCAATATGAA+GGG + chr2.2:69586921-69586940 None:intergenic 35.0%
GGATGGTATCAAGAATATGA+AGG - chr2.2:69589057-69589076 MS.gene01382:CDS 35.0%
GTAAAACAATGCTCTTCCAT+TGG + chr2.2:69585794-69585813 None:intergenic 35.0%
GTCACAGTTAATGAAACCAA+TGG - chr2.2:69585775-69585794 MS.gene01382:intron 35.0%
TAAGAAAATCCAACTCCAAC+AGG + chr2.2:69586492-69586511 None:intergenic 35.0%
TACAAGAAGCTTATTTCAGC+TGG - chr2.2:69588439-69588458 MS.gene01382:intron 35.0%
TAGGAATGGTTGATTATGCT+TGG - chr2.2:69587105-69587124 MS.gene01382:intron 35.0%
TGCCCTTTAGATCAATATGA+AGG + chr2.2:69586922-69586941 None:intergenic 35.0%
TTAGCATAGTCATCCAAACA+TGG + chr2.2:69588163-69588182 None:intergenic 35.0%
TTATGTGTATCATACAGGAC+CGG + chr2.2:69586125-69586144 None:intergenic 35.0%
TTATTCTTGGAATCTCCTGT+TGG - chr2.2:69586474-69586493 MS.gene01382:intron 35.0%
TTCCATAAAAAACAGTGAGG+TGG + chr2.2:69586362-69586381 None:intergenic 35.0%
TTTATGGCTTAATGGAGGTA+AGG - chr2.2:69585858-69585877 MS.gene01382:intron 35.0%
TTTGTGTTGGAATAGGTAAG+TGG - chr2.2:69589036-69589055 MS.gene01382:CDS 35.0%
! AAAACCAATGGTTTGTCTTC+AGG + chr2.2:69585841-69585860 None:intergenic 35.0%
! AAAGTTTGAAATTCCGTCAG+AGG - chr2.2:69587998-69588017 MS.gene01382:intron 35.0%
! CTTACACTTTTCTGCACAAT+TGG - chr2.2:69586674-69586693 MS.gene01382:intron 35.0%
! GATGAAGCACTCATCTTTAA+TGG - chr2.2:69587334-69587353 MS.gene01382:intron 35.0%
! GTTTGAGATTCGTAACAGAT+TGG - chr2.2:69587645-69587664 MS.gene01382:CDS 35.0%
! TTTTATCCATGGATGTGTTG+AGG - chr2.2:69587418-69587437 MS.gene01382:intron 35.0%
!! AGAGATTGGTCCATTTTTAG+TGG - chr2.2:69586232-69586251 MS.gene01382:intron 35.0%
!!! ATCCACCTCACTGTTTTTTA+TGG - chr2.2:69586357-69586376 MS.gene01382:CDS 35.0%
!!! ATGGAAGAGCATTGTTTTAC+TGG - chr2.2:69585794-69585813 MS.gene01382:intron 35.0%
!!! CCATTGGTTTTATGGCTTAA+TGG - chr2.2:69585850-69585869 MS.gene01382:intron 35.0%
!!! CTTTTATTTTTTTGGGCAGC+TGG - chr2.2:69587049-69587068 MS.gene01382:intron 35.0%
!!! TTGGTTTTATGGCTTAATGG+AGG - chr2.2:69585853-69585872 MS.gene01382:intron 35.0%
AAACATCCTCAACACATCCA+TGG + chr2.2:69587427-69587446 None:intergenic 40.0%
AAGGCTCTTGTTCTGTATGA+AGG + chr2.2:69586712-69586731 None:intergenic 40.0%
ACCAGTGAATATGCACAACT+AGG - chr2.2:69586522-69586541 MS.gene01382:intron 40.0%
AGCTTATTTCAGCTGGACTT+AGG - chr2.2:69588446-69588465 MS.gene01382:intron 40.0%
ATTTGGGTGACTAGATACCA+AGG - chr2.2:69588119-69588138 MS.gene01382:intron 40.0%
CAAACCTGAAGACAAACCAT+TGG - chr2.2:69585834-69585853 MS.gene01382:intron 40.0%
CCAGTGATGGTCATAATCTA+AGG - chr2.2:69588224-69588243 MS.gene01382:intron 40.0%
CCATCAGTGTCCACTAAAAA+TGG + chr2.2:69586245-69586264 None:intergenic 40.0%
CCTTAGATTATGACCATCAC+TGG + chr2.2:69588227-69588246 None:intergenic 40.0%
GACTAGATACCAAGGATCAT+GGG - chr2.2:69588127-69588146 MS.gene01382:intron 40.0%
GAGTCCTTGGTATCATGAAA+AGG - chr2.2:69588850-69588869 MS.gene01382:intron 40.0%
GATCTTGTGACTAACTTACC+TGG - chr2.2:69585715-69585734 MS.gene01382:CDS 40.0%
GCAACGACATATTTACTGGA+TGG - chr2.2:69588386-69588405 MS.gene01382:intron 40.0%
GCCACGCGTACATATATAAT+TGG + chr2.2:69588490-69588509 None:intergenic 40.0%
GGTGGGAGAAAATTAAGCTA+TGG - chr2.2:69585682-69585701 MS.gene01382:CDS 40.0%
TATAGAGATAGGAAATGGGG+TGG - chr2.2:69585661-69585680 MS.gene01382:CDS 40.0%
TATGGAGCAACACAAGAGAT+TGG - chr2.2:69586218-69586237 MS.gene01382:intron 40.0%
TCCTAGTTGTGCATATTCAC+TGG + chr2.2:69586526-69586545 None:intergenic 40.0%
TCCTTGGTATCATGAAAAGG+AGG - chr2.2:69588853-69588872 MS.gene01382:intron 40.0%
TGAAGATTGTACTCATGGTG+TGG - chr2.2:69587208-69587227 MS.gene01382:intron 40.0%
TGACTAGATACCAAGGATCA+TGG - chr2.2:69588126-69588145 MS.gene01382:intron 40.0%
TGATTCTCCAAGAAGAAAGG+TGG + chr2.2:69589160-69589179 None:intergenic 40.0%
TGGTGATTCTCCAAGAAGAA+AGG + chr2.2:69589163-69589182 None:intergenic 40.0%
TGTTGGAATAGGTAAGTGGA+TGG - chr2.2:69589040-69589059 MS.gene01382:CDS 40.0%
TTCTTCACCACCTTTCTTCT+TGG - chr2.2:69589150-69589169 MS.gene01382:CDS 40.0%
TTTCAGCTGGACTTAGGATT+TGG - chr2.2:69588452-69588471 MS.gene01382:intron 40.0%
TTTGCTACATTTAGAGGAGC+TGG - chr2.2:69589087-69589106 MS.gene01382:CDS 40.0%
! ACAAGAGCCTTTTACATAGC+AGG - chr2.2:69586721-69586740 MS.gene01382:intron 40.0%
! ACCTCCTTTTCATGATACCA+AGG + chr2.2:69588857-69588876 None:intergenic 40.0%
! CAATGGTTTGTCTTCAGGTT+TGG + chr2.2:69585836-69585855 None:intergenic 40.0%
! CTCGTAAATATTTTGCGAGG+TGG - chr2.2:69587511-69587530 MS.gene01382:CDS 40.0%
! GAACAAAGGTATGAGGATTG+AGG - chr2.2:69586295-69586314 MS.gene01382:intron 40.0%
! GTGCTTCATCACCATTTTCA+TGG + chr2.2:69587324-69587343 None:intergenic 40.0%
! TCTCAAACTTAAAGCACCTC+TGG + chr2.2:69587633-69587652 None:intergenic 40.0%
! TCTCATGGAACAAAGGTATG+AGG - chr2.2:69586288-69586307 MS.gene01382:intron 40.0%
! TTTGTCTTCAGGTTTGGTCA+TGG + chr2.2:69585830-69585849 None:intergenic 40.0%
!! CTGTATCTGGTTGATAGAAC+TGG + chr2.2:69588794-69588813 None:intergenic 40.0%
!!! CCATTTTTAGTGGACACTGA+TGG - chr2.2:69586242-69586261 MS.gene01382:intron 40.0%
ACTTGCCTATCACCAAGCAA+TGG - chr2.2:69588828-69588847 MS.gene01382:intron 45.0%
ATACCAAGGACTCCATTGCT+TGG + chr2.2:69588843-69588862 None:intergenic 45.0%
ATGACCATCACTGGCATGAA+GGG + chr2.2:69588218-69588237 None:intergenic 45.0%
ATGATGAGTTCAGCAAGCTC+TGG + chr2.2:69586878-69586897 None:intergenic 45.0%
ATGGAGGTAAGGTCATGCTT+TGG - chr2.2:69585869-69585888 MS.gene01382:intron 45.0%
ATTCGTCTCCGAAAACTAGC+CGG - chr2.2:69586103-69586122 MS.gene01382:intron 45.0%
CAAAGCAGACAGACGTATAG+AGG + chr2.2:69587274-69587293 None:intergenic 45.0%
CAACTAGGAGATGACTTCAC+AGG - chr2.2:69586537-69586556 MS.gene01382:CDS 45.0%
GCTCTCTCCTGCTATGTAAA+AGG + chr2.2:69586731-69586750 None:intergenic 45.0%
GGGTGGTTATGATCCATGTT+TGG - chr2.2:69588147-69588166 MS.gene01382:intron 45.0%
TAGATACCAAGGATCATGGG+TGG - chr2.2:69588130-69588149 MS.gene01382:intron 45.0%
TATGACCATCACTGGCATGA+AGG + chr2.2:69588219-69588238 None:intergenic 45.0%
TCATAACCACCCATGATCCT+TGG + chr2.2:69588139-69588158 None:intergenic 45.0%
TGAAGGGCTTTCTGAACATC+TGG + chr2.2:69588202-69588221 None:intergenic 45.0%
TGACATATCCAGCATAGTGC+TGG + chr2.2:69585759-69585778 None:intergenic 45.0%
TTGGAATCTCCTGTTGGAGT+TGG - chr2.2:69586480-69586499 MS.gene01382:intron 45.0%
! GCATAGTGCTGGAAATCAAC+AGG + chr2.2:69585748-69585767 None:intergenic 45.0%
! GTTGATTTCCAGCACTATGC+TGG - chr2.2:69585748-69585767 MS.gene01382:intron 45.0%
! TAGTGCTGGAAATCAACAGG+AGG + chr2.2:69585745-69585764 None:intergenic 45.0%
! TTAGTGGACACTGATGGCAA+GGG - chr2.2:69586248-69586267 MS.gene01382:intron 45.0%
! TTTAGTGGACACTGATGGCA+AGG - chr2.2:69586247-69586266 MS.gene01382:intron 45.0%
!! GACTTAGGATTTGGCTCTAC+AGG - chr2.2:69588461-69588480 MS.gene01382:intron 45.0%
!!! ATACAGGACCGGCTAGTTTT+CGG + chr2.2:69586114-69586133 None:intergenic 45.0%
!! TATATTGAATATTATTAAAT+AGG - chr2.2:69587597-69587616 MS.gene01382:CDS 5.0%
!! TTTAATAATATTCAATATAT+CGG + chr2.2:69587596-69587615 None:intergenic 5.0%
!!! TTACTTTATTTTTTTTTAAT+TGG - chr2.2:69585940-69585959 MS.gene01382:CDS 5.0%
AAAGCCCTTCATGCCAGTGA+TGG - chr2.2:69588211-69588230 MS.gene01382:intron 50.0%
AGAGATAGGAAATGGGGTGG+TGG - chr2.2:69585664-69585683 MS.gene01382:CDS 50.0%
ATAGCAGGAGAGAGCTATGC+AGG - chr2.2:69586736-69586755 MS.gene01382:intron 50.0%
ATCAGAGGAAGTGGTGTGTG+TGG - chr2.2:69587374-69587393 MS.gene01382:intron 50.0%
GAGATAGGAAATGGGGTGGT+GGG - chr2.2:69585665-69585684 MS.gene01382:CDS 50.0%
GGATGCTCTTCTGTGGGATA+TGG - chr2.2:69586200-69586219 MS.gene01382:intron 50.0%
TAGAACTGGCACTCTACCGT+CGG + chr2.2:69588780-69588799 None:intergenic 50.0%
TCACCAAGCAATGGAGTCCT+TGG - chr2.2:69588837-69588856 MS.gene01382:intron 50.0%
TTGTTCAGTGGAGACACCGA+CGG - chr2.2:69588761-69588780 MS.gene01382:intron 50.0%
! GGACTCCATTGCTTGGTGAT+AGG + chr2.2:69588836-69588855 None:intergenic 50.0%
!! TATCCCACAGAAGAGCATCC+AGG + chr2.2:69586200-69586219 None:intergenic 50.0%
AGGTCCTGGATGCTCTTCTG+TGG - chr2.2:69586193-69586212 MS.gene01382:intron 55.0%
GCTGGAAATCAACAGGAGGC+TGG + chr2.2:69585741-69585760 None:intergenic 55.0%
GGTCCTGGATGCTCTTCTGT+GGG - chr2.2:69586194-69586213 MS.gene01382:intron 55.0%
! AAATCAACAGGAGGCTGGCC+AGG + chr2.2:69585736-69585755 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 69585598 69589197 69585598 ID=MS.gene01382
chr2.2 mRNA 69585598 69589197 69585598 ID=MS.gene01382.t1;Parent=MS.gene01382
chr2.2 exon 69588921 69589197 69588921 ID=MS.gene01382.t1.exon1;Parent=MS.gene01382.t1
chr2.2 CDS 69588921 69589197 69588921 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69588493 69588600 69588493 ID=MS.gene01382.t1.exon2;Parent=MS.gene01382.t1
chr2.2 CDS 69588493 69588600 69588493 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69588237 69588332 69588237 ID=MS.gene01382.t1.exon3;Parent=MS.gene01382.t1
chr2.2 CDS 69588237 69588332 69588237 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69588038 69588130 69588038 ID=MS.gene01382.t1.exon4;Parent=MS.gene01382.t1
chr2.2 CDS 69588038 69588130 69588038 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69587849 69587931 69587849 ID=MS.gene01382.t1.exon5;Parent=MS.gene01382.t1
chr2.2 CDS 69587849 69587931 69587849 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69587440 69587727 69587440 ID=MS.gene01382.t1.exon6;Parent=MS.gene01382.t1
chr2.2 CDS 69587440 69587727 69587440 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69586532 69586662 69586532 ID=MS.gene01382.t1.exon7;Parent=MS.gene01382.t1
chr2.2 CDS 69586532 69586662 69586532 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69586313 69586408 69586313 ID=MS.gene01382.t1.exon8;Parent=MS.gene01382.t1
chr2.2 CDS 69586313 69586408 69586313 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69585921 69586026 69585921 ID=MS.gene01382.t1.exon9;Parent=MS.gene01382.t1
chr2.2 CDS 69585921 69586026 69585921 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
chr2.2 exon 69585598 69585744 69585598 ID=MS.gene01382.t1.exon10;Parent=MS.gene01382.t1
chr2.2 CDS 69585598 69585744 69585598 ID=cds.MS.gene01382.t1;Parent=MS.gene01382.t1
Gene Sequence

>MS.gene01382

ATGACAAGTTTCTACACATTGGCTTTGATAGTGTTGTTTTTACATGTGAATCCTATTGTTTCTTATAGAGATAGGAAATGGGGTGGTGGGAGAAAATTAAGCTATGGTGATAATGATGATCTTGTGACTAACTTACCTGGCCAGCCTCCTGTTGATTTCCAGCACTATGCTGGATATGTCACAGTTAATGAAACCAATGGAAGAGCATTGTTTTACTGGTTTTTTGAGGCCATGACCAAACCTGAAGACAAACCATTGGTTTTATGGCTTAATGGAGGTAAGGTCATGCTTTGGTATAAAAGTAAATGACAAATTTGAGAACAAAAGTTTATTGAACTCATTTTACTTTATTTTTTTTTAATTGGTGGGGAAGAGTGTGATGTTACTTTTGTATGTTTTCAACCTATTTGAGAAATGTTAAAATAGCGAATTCGGCTCTAAAGAAGACAGATAAATAAACACATAAGAATACAACAAAATGATCATAGAGTTCGGTCAATTGTGCATTCGTCTCCGAAAACTAGCCGGTCCTGTATGATACACATAATAAAATATATTATTTGTCTAGGTGACAATGTTCTTTTTTATTACTTACAGGTCCTGGATGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACTGATGGCAAGGGTCTCAAATTTAATAACTTCTCATGGAACAAAGGTATGAGGATTGAGGACCATAAACATAACATATATTAGTATACTTTGTGGCACAATCCACCTCACTGTTTTTTATGGAAATGTAAAAAAATTTCCCTACATAGAATTGTTAATTGATGCCAAGTATGTTTTATATATATGTGAAATGTAATATCATGCAGAAGCAAACATGTTATTCTTGGAATCTCCTGTTGGAGTTGGATTTTCTTACTCGAATACAACCAGTGAATATGCACAACTAGGAGATGACTTCACAGGTTTTTACTTCATCTAAATATCTTTGTTTTTTGCATAATGGTCATCAAATGCTACAAAATAACTCGATAATTAATTTTAATGTGCTCTATTGACTATTTGAAACAGCTAACGATGCTTACACTTTTCTGCACAATTGGTTTCTCAAGTATCCTTCATACAGAACAAGAGCCTTTTACATAGCAGGAGAGAGCTATGCAGGTATTGAAATCAAAATCATTGTGTCTGAGTATCGAGTTCGATTCTTAATGATAAAAAAACATGTCACTTTTAGTCCCATGAATTGATCATAAAACATGTTATGCAGGAAAGTATGTACCAGAGCTTGCTGAACTCATCATTGATAGAAACAATAACCCTTCCCTTCATATTGATCTAAAGGGCATTTTGGTATGTTCCTACAAGATTTAAAATCTAGCTTAAAGTTCTAGATAAATATCCAAGTATAAAGAATCTTATTTTAGTATAAATATGAATGAGCACAAAATAATGCTTTTATTTTTTTGGGCAGCTGGGAAACCCTGAAACTTCTTATAATGAAGATTGGTTAGGAATGGTTGATTATGCTTGGAGTCATGCAGTGATATCTGATGAAACCTATAAAAAAATTAGAAGAAGTTGTGACTTTAACAGTAGTGATCCATGGAAAAATGAAGATTGTACTCATGGTGTGGATGAAGTGCTTAAACAGTACAATGAAATTGATATTTACAGCCTCTATACGTCTGTCTGCTTTGCTAGTACAGCGCGATCAAACGATCAATCCATGAAAATGGTGATGAAGCACTCATCTTTAATGGTGAGTGATCAAAACAATATCAGAGGAAGTGGTGTGTGTGGAAATTGATTTTAACAATGAACTTTTATCCATGGATGTGTTGAGGATGTTTTAATATGTTACTTTTTGCCCAAGTAAACTTATACACAATTTGTTTTGAATTCTTTTTGAGAAAACTCGTAAATATTTTGCGAGGTGGAAAACAAATGCGTGAAATTTCACCAGATGTCATTTGAAGAAGACTTTTCTTACAATAGACCGATATATTGAATATTATTAAATAGGCTAAATTATACCAGAGGTGCTTTAAGTTTGAGATTCGTAACAGATTGGTCATTTATGTTATTTTGGTCACACATAAGTCATTTAAGTTCAAGGTTTGTAACAGATTGATCTTTAAGTTAATTTGGTCACACATAAGTACTTTAAGTTTGTAAACGTTTTCAATTTAGTCCTTATGTTAACCAAAACAATGATATGACAGAAAGACTAAATTGAAAACGTTTACAAACTTAAAGGACTTATGTGTGACGAAAATAACTTAAATGATCAATCTGTTACAAACCTCAAACTTAAAAGACTTATGTGTGACCAAAATAATTAAAAGATCAATCTATTACAAACGTTAAACTTAAACTTAAAGAACCCTATTAAATACAATTAAAAGTTTGAAATTCCGTCAGAGGAGACTTTTTTTAGATTGATATATACACACGGGCGTGCGTGCGTATATATGTATATGTTTTGAATTGTGTATATAAATTGATCTAACACTTCTTTGTGGATTTGGGTGACTAGATACCAAGGATCATGGGTGGTTATGATCCATGTTTGGATGACTATGCTAAAGCTTTTTACAACAAACCAGATGTTCAGAAAGCCCTTCATGCCAGTGATGGTCATAATCTAAGGAATTGGAGTATTTGCAAGTATATATTGTCCTATTTTTCACTTTTTTGTACTAATATCTACATAAATTTGATTAATTTAATTTTTTATGAATTTGATTACCCTTAATCTAAATTGACATTTTATCTGTTAATAAAAAACAGCAACGACATATTTACTGGATGGAAACAAACAAAACATTCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCTGGACTTAGGATTTGGCTCTACAGGTAACCAATTATATATGTACGCGTGGCGCGCATCGTAAATTTCTGAATTTTCATCTTCAAAAACAAATTAGTATTGTTAATAAAGAGGATATTTAAAATAAAATAAAATTATCTAGTAATTTAAAATGAGACTATATACGGTAACGATTTTGTTTCTAAAGGAAAATAAACTTAAGTGACAAAGCTAATAATATTGTTCCATTTGAACTTTTTCAATAGATTTAATTAAAGACCTTATAAACCATATTTTTGCATGATTTTTATTTCTTCATACTTGATTGTTCAGTGGAGACACCGACGGTAGAGTGCCAGTTCTATCAACCAGATACAGCTTAAGCATTCTTGACTTGCCTATCACCAAGCAATGGAGTCCTTGGTATCATGAAAAGGAGGTACAAATATTATGAATTGATTTTTTTTAATATTTTTTATAATAACTCATGAATTAATATAGATAAATTGAATTTGCATTAAAAGATCATATTCCTAATATAAGTATGACATATATTGATGATGTATTTGCTATCATGATTCATTTTTAAAAATGATTTGTTTTGTGTTGGAATAGGTAAGTGGATGGTATCAAGAATATGAAGGACTTACATTTGCTACATTTAGAGGAGCTGGTCATGCAGTGCCCTGTTTTAAACCAAGCAATTCACTTACATTCTTCACCACCTTTCTTCTTGGAGAATCACCACCTTCAACTAGATAA
Protein sequence

>MS.gene01382.t1

MTSFYTLALIVLFLHVNPIVSYRDRKWGGGRKLSYGDNDDLVTNLPGQPPVDFQHYAGYVTVNETNGRALFYWFFEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKYPSYRTRAFYIAGESYAGKYVPELAELIIDRNNNPSLHIDLKGILLGNPETSYNEDWLGMVDYAWSHAVISDETYKKIRRSCDFNSSDPWKNEDCTHGVDEVLKQYNEIDIYSLYTSVCFASTARSNDQSMKMVMKHSSLMIPRIMGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLRNWSICNNDIFTGWKQTKHSVIPIYKKLISAGLRIWLYSGDTDGRVPVLSTRYSLSILDLPITKQWSPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLTFFTTFLLGESPPSTR