AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030123

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030123.t1 MTR_4g122960 94.207 397 21 1 1 397 1 395 0.0 775
MS.gene030123.t1 MTR_4g122950 83.709 399 61 2 1 397 1 397 0.0 689
MS.gene030123.t1 MTR_4g089155 53.994 363 154 8 39 397 52 405 1.66e-132 390
MS.gene030123.t1 MTR_2g012850 51.515 363 161 7 39 397 34 385 5.81e-128 378
MS.gene030123.t1 MTR_2g012860 50.685 365 163 6 39 397 40 393 4.30e-126 373
MS.gene030123.t1 MTR_4g075150 48.525 373 172 9 31 397 25 383 1.17e-117 351
MS.gene030123.t1 MTR_4g075150 48.387 372 172 9 31 397 25 381 1.46e-117 351
MS.gene030123.t1 MTR_7g013790 44.802 404 188 9 3 397 7 384 1.54e-111 336
MS.gene030123.t1 MTR_1g095540 44.612 399 192 8 2 397 4 376 4.02e-111 334
MS.gene030123.t1 MTR_1g095560 44.529 393 198 8 8 397 1 376 5.38e-111 334
MS.gene030123.t1 MTR_1g095560 44.529 393 198 8 8 397 1 376 1.47e-110 334
MS.gene030123.t1 MTR_2g062990 44.643 392 197 9 9 397 8 382 1.24e-102 313
MS.gene030123.t1 MTR_3g079590 45.682 359 171 5 39 397 76 410 4.48e-101 310
MS.gene030123.t1 MTR_3g079630 44.321 361 175 5 39 399 76 410 2.52e-99 305
MS.gene030123.t1 MTR_2g081620 41.688 391 197 8 10 397 21 383 4.17e-99 304
MS.gene030123.t1 MTR_2g062980 42.347 392 206 8 9 397 8 382 2.13e-98 302
MS.gene030123.t1 MTR_0003s0560 44.875 361 175 6 37 397 70 406 4.32e-98 302
MS.gene030123.t1 MTR_3g079620 44.134 358 175 5 39 396 76 408 2.28e-97 300
MS.gene030123.t1 MTR_3g079560 43.923 362 177 6 37 397 74 410 2.53e-97 300
MS.gene030123.t1 MTR_2g063000 40.852 399 207 9 3 397 10 383 3.13e-97 299
MS.gene030123.t1 MTR_3g079570 44.011 359 176 5 39 397 77 410 4.29e-97 300
MS.gene030123.t1 MTR_1g021010 43.557 388 179 9 19 397 50 406 5.48e-97 299
MS.gene030123.t1 MTR_3g034290 42.659 361 183 6 37 396 71 408 1.26e-95 293
MS.gene030123.t1 MTR_1g021020 42.120 368 186 4 30 397 67 407 3.83e-95 294
MS.gene030123.t1 MTR_1g020090 40.992 383 193 5 17 397 66 417 4.47e-95 295
MS.gene030123.t1 MTR_3g034290 42.818 362 183 6 37 397 71 409 7.29e-95 294
MS.gene030123.t1 MTR_3g079600 44.110 365 175 7 37 397 72 411 3.93e-93 289
MS.gene030123.t1 MTR_0003s0560 49.813 267 131 2 37 303 70 333 4.49e-87 269
MS.gene030123.t1 MTR_5g072570 39.418 378 194 11 33 397 21 376 1.90e-81 258
MS.gene030123.t1 MTR_3g090150 39.086 394 210 11 13 397 6 378 2.99e-81 258
MS.gene030123.t1 MTR_2g063000 36.020 397 198 9 3 397 10 352 1.55e-77 247
MS.gene030123.t1 MTR_3g498755 37.333 375 198 11 36 397 10 360 2.10e-77 247
MS.gene030123.t1 MTR_3g090130 38.325 394 209 12 12 397 4 371 2.14e-77 248
MS.gene030123.t1 MTR_2g449850 35.079 382 215 5 24 397 21 377 2.02e-76 245
MS.gene030123.t1 MTR_3g434850 38.378 370 192 12 37 397 27 369 1.60e-75 243
MS.gene030123.t1 MTR_8g099930 37.500 408 224 12 16 414 9 394 1.03e-74 241
MS.gene030123.t1 MTR_7g021130 35.751 386 213 11 39 414 29 389 4.27e-71 231
MS.gene030123.t1 MTR_1g040370 45.200 250 120 5 35 276 25 265 1.56e-67 221
MS.gene030123.t1 MTR_8g011350 35.463 313 182 8 11 317 8 306 3.98e-56 192
MS.gene030123.t1 MTR_8g011350 35.463 313 182 8 11 317 8 306 6.30e-56 192
MS.gene030123.t1 MTR_7g051430 30.374 428 242 13 8 396 4 414 5.62e-55 187
MS.gene030123.t1 MTR_7g051430 30.536 429 242 13 8 397 4 415 1.35e-54 189
MS.gene030123.t1 MTR_7g080180 31.881 436 233 15 5 397 4 418 2.44e-53 184
MS.gene030123.t1 MTR_7g080180 31.881 436 233 15 5 397 4 418 6.26e-53 184
MS.gene030123.t1 MTR_4g122970 89.773 88 8 1 1 88 1 87 7.08e-48 159
MS.gene030123.t1 MTR_1g102130 29.310 406 225 12 3 397 51 405 1.29e-41 154
MS.gene030123.t1 MTR_4g021535 29.587 436 248 17 6 415 6 408 4.10e-40 149
MS.gene030123.t1 MTR_1g094155 40.000 205 118 5 53 257 88 287 7.14e-40 149
MS.gene030123.t1 MTR_4g057585 38.605 215 127 5 46 259 87 297 8.27e-40 149
MS.gene030123.t1 MTR_3g100420 30.048 416 251 14 2 397 21 416 2.77e-39 147
MS.gene030123.t1 MTR_2g018600 36.000 225 133 7 41 259 34 253 4.33e-39 146
MS.gene030123.t1 MTR_2g018590 32.500 280 177 8 23 293 14 290 6.75e-39 146
MS.gene030123.t1 MTR_4g057595 38.028 213 127 5 48 259 90 298 8.94e-39 146
MS.gene030123.t1 MTR_4g021520 30.402 398 246 15 40 423 39 419 2.06e-38 144
MS.gene030123.t1 MTR_4g021500 31.200 375 218 16 40 397 39 390 2.71e-38 147
MS.gene030123.t1 MTR_4g021500 28.010 382 241 16 52 417 486 849 1.38e-32 130
MS.gene030123.t1 MTR_4g021520 30.402 398 246 15 40 423 39 419 2.73e-38 144
MS.gene030123.t1 MTR_4g021500 31.200 375 218 16 40 397 39 390 2.84e-38 147
MS.gene030123.t1 MTR_4g021500 29.586 338 197 15 52 363 486 808 9.81e-32 128
MS.gene030123.t1 MTR_2g095730 36.190 210 130 4 49 257 88 294 6.75e-38 144
MS.gene030123.t1 MTR_4g021530 29.412 408 236 17 7 397 18 390 9.15e-38 143
MS.gene030123.t1 MTR_2g018630 36.000 225 133 7 41 259 37 256 1.96e-37 142
MS.gene030123.t1 MTR_4g057600 36.538 208 122 5 53 257 93 293 2.37e-37 142
MS.gene030123.t1 MTR_4g021490 29.730 370 230 15 40 397 39 390 3.71e-37 141
MS.gene030123.t1 MTR_1g050545 39.691 194 113 4 54 247 82 271 5.31e-37 141
MS.gene030123.t1 MTR_3g045770 37.054 224 124 6 44 258 30 245 8.24e-37 140
MS.gene030123.t1 MTR_2g095750 38.235 204 121 5 49 251 94 293 2.23e-36 139
MS.gene030123.t1 MTR_4g021510 28.750 400 251 13 8 397 14 389 2.58e-36 139
MS.gene030123.t1 MTR_4g057570 29.640 361 216 10 43 397 77 405 1.00e-35 137
MS.gene030123.t1 MTR_5g097180 33.333 258 140 7 3 257 15 243 1.03e-31 125
MS.gene030123.t1 MTR_2g009200 30.132 302 170 11 12 304 9 278 4.11e-31 124
MS.gene030123.t1 MTR_0075s0010 30.882 272 135 10 39 294 6 240 1.38e-30 120
MS.gene030123.t1 MTR_4g084710 39.429 175 100 4 57 228 45 216 2.37e-29 119
MS.gene030123.t1 MTR_2g095710 31.754 211 126 7 49 257 88 282 4.08e-22 98.6
MS.gene030123.t1 MTR_4g021535 25.229 436 220 19 6 415 6 361 2.45e-19 89.7
MS.gene030123.t1 MTR_2g018630 33.099 142 90 4 119 259 14 151 9.65e-18 84.7
MS.gene030123.t1 MTR_1g051175 40.196 102 54 3 43 139 10 109 3.63e-17 81.6
MS.gene030123.t1 MTR_5g021570 42.157 102 43 4 194 293 271 358 4.32e-16 80.1
MS.gene030123.t1 MTR_7g100560 26.291 213 89 5 52 264 69 213 1.03e-14 75.1
MS.gene030123.t1 MTR_4g056520 31.507 146 88 5 58 199 36 173 1.50e-13 72.4
MS.gene030123.t1 MTR_2g084530 34.247 146 84 4 58 199 36 173 3.38e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030123.t1 AT3G17180 62.903 372 129 4 30 397 28 394 2.09e-164 469
MS.gene030123.t1 AT3G17180 62.903 372 129 4 30 397 28 394 8.20e-164 469
MS.gene030123.t1 AT1G11080 49.502 402 190 6 6 397 11 409 6.08e-129 381
MS.gene030123.t1 AT1G11080 49.502 402 190 6 6 397 11 409 9.73e-129 380
MS.gene030123.t1 AT4G15100 47.880 401 195 8 4 397 8 401 2.47e-125 372
MS.gene030123.t1 AT5G23210 50.802 374 161 7 39 397 50 415 6.37e-125 370
MS.gene030123.t1 AT5G23210 50.802 374 161 7 39 397 50 415 2.67e-124 369
MS.gene030123.t1 AT1G61130 47.990 398 178 9 5 397 7 380 3.88e-122 363
MS.gene030123.t1 AT4G30610 50.964 363 167 7 37 397 29 382 1.26e-120 359
MS.gene030123.t1 AT2G24000 49.600 375 173 7 28 397 18 381 2.85e-116 348
MS.gene030123.t1 AT2G35780 47.253 364 171 6 37 397 26 371 2.29e-114 342
MS.gene030123.t1 AT2G24010 47.922 361 172 4 37 397 27 371 8.54e-112 336
MS.gene030123.t1 AT3G07990 48.641 368 170 8 33 397 26 377 2.37e-111 335
MS.gene030123.t1 AT2G35770 45.113 399 193 7 1 397 1 375 7.05e-110 331
MS.gene030123.t1 AT5G08260 45.430 372 180 8 37 397 36 395 1.63e-109 331
MS.gene030123.t1 AT3G02110 44.110 399 185 9 15 397 15 391 1.79e-109 330
MS.gene030123.t1 AT2G24010 45.745 376 173 5 37 397 27 386 1.49e-106 323
MS.gene030123.t1 AT2G24010 45.553 371 171 5 41 396 2 356 4.21e-106 318
MS.gene030123.t1 AT4G30810 39.183 416 236 5 12 423 9 411 4.61e-100 306
MS.gene030123.t1 AT2G24010 42.821 397 171 6 41 397 2 382 5.90e-100 306
MS.gene030123.t1 AT3G63470 44.505 364 170 8 39 397 80 416 3.49e-97 300
MS.gene030123.t1 AT5G23210 48.297 323 145 6 90 397 5 320 8.94e-97 296
MS.gene030123.t1 AT5G23210 48.276 319 143 6 94 397 8 319 1.71e-96 293
MS.gene030123.t1 AT5G23210 48.276 319 143 6 94 397 8 319 1.04e-95 293
MS.gene030123.t1 AT2G05850 40.992 383 194 9 23 397 45 403 2.29e-87 274
MS.gene030123.t1 AT3G52020 41.848 368 187 9 34 397 73 417 3.54e-87 274
MS.gene030123.t1 AT1G43780 39.402 368 196 7 39 397 36 385 8.40e-85 267
MS.gene030123.t1 AT3G52000 40.108 369 183 11 37 397 60 398 1.14e-82 262
MS.gene030123.t1 AT3G52010 39.730 370 187 10 37 397 61 403 1.95e-81 259
MS.gene030123.t1 AT2G12480 39.835 364 197 7 37 397 28 372 1.51e-77 248
MS.gene030123.t1 AT5G42240 39.353 371 195 10 37 397 29 379 2.94e-77 248
MS.gene030123.t1 AT2G33530 38.315 368 196 10 39 397 32 377 3.00e-75 242
MS.gene030123.t1 AT1G28110 36.573 391 215 10 16 397 7 373 9.23e-75 241
MS.gene030123.t1 AT1G28110 36.573 391 215 10 16 397 7 373 9.23e-75 241
MS.gene030123.t1 AT2G12480 39.394 363 176 8 37 397 28 348 1.75e-74 239
MS.gene030123.t1 AT5G42230 37.466 371 202 10 37 397 25 375 8.79e-74 238
MS.gene030123.t1 AT5G42230 37.466 371 202 10 37 397 25 375 8.79e-74 238
MS.gene030123.t1 AT2G12480 39.118 363 175 9 37 397 28 346 4.71e-73 236
MS.gene030123.t1 AT2G12480 39.118 363 175 9 37 397 28 346 4.95e-73 236
MS.gene030123.t1 AT4G12910 37.725 334 190 10 1 325 1 325 6.96e-63 209
MS.gene030123.t1 AT4G12910 37.725 334 190 10 1 325 1 325 1.40e-62 210
MS.gene030123.t1 AT3G25420 32.995 394 218 12 41 397 30 414 1.17e-58 199
MS.gene030123.t1 AT3G56540 56.173 162 69 2 34 195 73 232 5.22e-56 186
MS.gene030123.t1 AT3G45010 31.092 357 216 11 46 400 92 420 1.41e-45 165
MS.gene030123.t1 AT1G73280 36.296 270 156 7 44 305 36 297 8.21e-45 160
MS.gene030123.t1 AT2G22990 29.744 390 227 11 41 417 23 378 1.49e-44 160
MS.gene030123.t1 AT2G22990 29.744 390 227 11 41 417 23 378 1.72e-44 160
MS.gene030123.t1 AT2G22990 30.000 390 226 12 41 417 23 378 2.81e-44 160
MS.gene030123.t1 AT2G24000 33.867 375 169 13 28 397 18 318 3.42e-44 159
MS.gene030123.t1 AT2G22920 35.472 265 160 5 41 297 25 286 3.90e-44 156
MS.gene030123.t1 AT1G73280 36.296 270 156 7 44 305 36 297 6.97e-44 159
MS.gene030123.t1 AT2G22920 35.472 265 160 5 41 297 25 286 4.39e-43 156
MS.gene030123.t1 AT2G22920 35.472 265 160 5 41 297 25 286 5.73e-43 156
MS.gene030123.t1 AT1G73290 33.948 271 165 6 41 305 32 294 1.21e-42 152
MS.gene030123.t1 AT2G22970 34.211 266 161 7 41 297 25 285 1.76e-42 152
MS.gene030123.t1 AT1G73290 30.495 364 210 10 41 397 32 359 4.67e-42 153
MS.gene030123.t1 AT2G22970 34.351 262 158 7 41 293 25 281 9.20e-42 152
MS.gene030123.t1 AT1G73290 30.495 364 210 10 41 397 32 359 9.77e-42 153
MS.gene030123.t1 AT2G22970 34.351 262 158 7 41 293 25 281 1.37e-41 153
MS.gene030123.t1 AT2G22970 34.351 262 158 7 41 293 25 281 1.98e-41 152
MS.gene030123.t1 AT3G10410 37.500 216 130 5 42 257 86 296 2.84e-41 153
MS.gene030123.t1 AT1G73270 34.351 262 161 5 44 297 36 294 3.44e-41 152
MS.gene030123.t1 AT1G73270 34.351 262 161 5 44 297 36 294 3.63e-41 151
MS.gene030123.t1 AT5G22980 39.234 209 122 5 48 256 91 294 4.68e-41 152
MS.gene030123.t1 AT2G22980 33.585 265 160 5 41 297 26 282 7.43e-41 150
MS.gene030123.t1 AT2G22980 33.585 265 160 5 41 297 26 282 1.24e-40 150
MS.gene030123.t1 AT3G10450 39.013 223 128 4 44 261 32 251 1.69e-40 149
MS.gene030123.t1 AT2G22980 33.585 265 160 5 41 297 26 282 1.76e-40 149
MS.gene030123.t1 AT1G33540 35.472 265 160 5 41 297 29 290 2.04e-40 150
MS.gene030123.t1 AT1G73300 37.220 223 132 4 41 258 33 252 3.19e-40 149
MS.gene030123.t1 AT1G73300 37.220 223 132 4 41 258 33 252 3.19e-40 149
MS.gene030123.t1 AT3G10450 39.013 223 128 4 44 261 32 251 3.61e-40 149
MS.gene030123.t1 AT2G23000 29.396 364 214 10 44 397 28 358 3.69e-40 149
MS.gene030123.t1 AT2G23000 29.396 364 214 10 44 397 28 358 3.69e-40 149
MS.gene030123.t1 AT3G12203 33.677 291 176 7 12 293 5 287 4.76e-40 148
MS.gene030123.t1 AT2G23010 35.249 261 151 7 8 263 1 248 5.49e-40 148
MS.gene030123.t1 AT5G09640 28.676 408 247 13 8 397 4 385 6.15e-40 149
MS.gene030123.t1 AT2G23010 35.249 261 151 7 8 263 1 248 6.20e-40 148
MS.gene030123.t1 AT1G73310 37.220 223 132 4 41 258 33 252 8.12e-40 147
MS.gene030123.t1 AT3G12203 35.496 262 156 6 41 293 9 266 8.61e-40 147
MS.gene030123.t1 AT2G22980 33.333 267 160 6 41 297 26 284 1.46e-39 145
MS.gene030123.t1 AT1G73310 37.220 223 132 4 41 258 33 252 1.80e-39 147
MS.gene030123.t1 AT2G22990 29.744 390 218 13 41 417 23 369 7.58e-39 145
MS.gene030123.t1 AT3G10450 39.423 208 118 4 59 261 4 208 1.21e-38 143
MS.gene030123.t1 AT3G12220 35.338 266 159 6 41 297 27 288 2.15e-38 144
MS.gene030123.t1 AT3G10450 39.423 208 118 4 59 261 4 208 2.20e-38 143
MS.gene030123.t1 AT5G36180 37.273 220 130 4 44 258 36 252 4.50e-38 143
MS.gene030123.t1 AT1G33540 35.223 247 149 5 59 297 4 247 1.02e-37 142
MS.gene030123.t1 AT3G12220 37.220 223 130 5 41 257 27 245 7.55e-36 136
MS.gene030123.t1 AT3G12220 35.081 248 148 6 59 297 15 258 1.35e-35 135
MS.gene030123.t1 AT3G12203 35.622 233 137 6 70 293 1 229 1.72e-35 135
MS.gene030123.t1 AT3G12230 33.948 271 166 6 41 302 27 293 2.92e-35 135
MS.gene030123.t1 AT3G12240 37.168 226 128 7 41 258 28 247 3.67e-35 135
MS.gene030123.t1 AT1G15000 42.614 176 90 5 57 228 37 205 1.18e-32 128
MS.gene030123.t1 AT5G22960 35.838 173 88 4 46 218 25 174 1.74e-27 108
MS.gene030123.t1 AT1G73280 33.514 185 113 5 124 305 18 195 1.38e-24 103
MS.gene030123.t1 AT2G22990 28.041 296 172 9 130 417 2 264 5.61e-23 99.4
MS.gene030123.t1 AT2G22990 28.041 296 172 10 130 417 2 264 6.31e-23 99.0
MS.gene030123.t1 AT1G73280 33.333 177 108 5 132 305 1 170 1.23e-21 95.1
MS.gene030123.t1 AT1G73310 36.296 135 84 2 124 258 18 150 3.19e-21 94.4
MS.gene030123.t1 AT5G36180 35.556 135 85 2 124 258 18 150 3.18e-20 91.7
MS.gene030123.t1 AT5G36180 35.556 135 85 2 124 258 18 150 3.44e-20 91.3
MS.gene030123.t1 AT5G36180 35.556 135 85 2 124 258 18 150 3.96e-20 91.3
MS.gene030123.t1 AT5G36180 35.556 135 85 2 124 258 18 150 3.96e-20 91.3
MS.gene030123.t1 AT2G22980 30.994 171 108 3 130 297 2 165 1.84e-19 88.6
MS.gene030123.t1 AT2G27920 30.814 172 105 5 58 224 37 199 3.66e-16 80.5

Find 81 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCCTTTATTAATCTTAA+AGG 0.114539 8.4:+11422170 MS.gene030123:CDS
TTTACCTTTGTAAGTGATTC+AGG 0.177366 8.4:-11423098 None:intergenic
CCAGAGAAGGAGAGGTTTAT+TGG 0.191451 8.4:-11421023 None:intergenic
AAACCTTGATTCCAAGAGTA+TGG 0.242904 8.4:-11421262 None:intergenic
ATGGTCTAATGAGTGCTTTC+AGG 0.245293 8.4:+11422974 MS.gene030123:CDS
ATGAAGAGGATGAGAACTTT+TGG 0.255989 8.4:+11423266 MS.gene030123:CDS
TCATAGTAATCATCAGTTTC+TGG 0.258939 8.4:-11422855 None:intergenic
CTTGATGAGTTTAGTGTAGA+TGG 0.268691 8.4:-11423534 None:intergenic
AAAACCTTTAAGATTAATAA+AGG 0.271046 8.4:-11422174 None:intergenic
CCTACAATTTCTTGGTGAAT+TGG 0.271062 8.4:+11421656 MS.gene030123:CDS
GCCTTAAGATATGGATTTAC+AGG 0.283869 8.4:+11423561 MS.gene030123:CDS
TAACCTGAAAAGTGTGAAAT+TGG 0.324453 8.4:-11420932 None:intergenic
TGAGGATGCCTACAATTTCT+TGG 0.340044 8.4:+11421648 MS.gene030123:CDS
AAAGAAAGAAACATAGGAAT+TGG 0.347051 8.4:-11420802 None:intergenic
CCAATAAACCTCTCCTTCTC+TGG 0.363351 8.4:+11421023 MS.gene030123:CDS
GATGATTACTATGATTATAA+AGG 0.388668 8.4:+11422864 MS.gene030123:CDS
AACCCATACTCTTGGAATCA+AGG 0.399186 8.4:+11421259 MS.gene030123:CDS
TCAAGGGTGGCCTTAAGATA+TGG 0.399489 8.4:+11423552 MS.gene030123:CDS
GGACCTGGATGCTCCTCAAT+TGG 0.403586 8.4:+11421172 MS.gene030123:intron
CCAATTCACCAAGAAATTGT+AGG 0.412556 8.4:-11421656 None:intergenic
AAACCTTTAAGATTAATAAA+GGG 0.425372 8.4:-11422173 None:intergenic
CCTCTCCTTCTCTGGCTCAA+TGG 0.426524 8.4:+11421031 MS.gene030123:CDS
GATGTCGTAAGTATTGAATA+TGG 0.438502 8.4:-11423492 None:intergenic
TAAAATTCAACCCATACTCT+TGG 0.442816 8.4:+11421251 MS.gene030123:CDS
ACCTGTAAATCCATATCTTA+AGG 0.443474 8.4:-11423562 None:intergenic
GAGGAAACAGTAAAATAGAA+TGG 0.452176 8.4:+11423375 MS.gene030123:CDS
TGTCAATTTCTGAATAATCA+TGG 0.467504 8.4:-11423013 None:intergenic
CTGAATAATCATGGAAGAGT+TGG 0.471128 8.4:-11423004 None:intergenic
TAATGAGTGCTTTCAGGCCA+TGG 0.471492 8.4:+11422980 MS.gene030123:CDS
CATCTACACTAAACTCATCA+AGG 0.478566 8.4:+11423535 MS.gene030123:CDS
TGTGAAATTGGTGGTGTTGA+AGG 0.480195 8.4:-11420920 None:intergenic
GTGGAGTCACCCATTGGAGT+TGG 0.482769 8.4:+11421469 MS.gene030123:CDS
GGTGGTGCTGTTGTTGAGAT+AGG 0.483547 8.4:+11421196 MS.gene030123:CDS
TTATTTGTGGAGTCACCCAT+TGG 0.489508 8.4:+11421463 MS.gene030123:CDS
AGTGAGATCAGAAGAAGTAT+TGG 0.496120 8.4:-11421503 None:intergenic
CCTCCAATTGAGGAGCATCC+AGG 0.498122 8.4:-11421175 None:intergenic
AAACAGTAAAATAGAATGGA+AGG 0.500338 8.4:+11423379 MS.gene030123:CDS
GATTTCCACAGTTTAAATCC+AGG 0.503025 8.4:+11421686 MS.gene030123:CDS
TTACCTTTGTAAGTGATTCA+GGG 0.504002 8.4:-11423097 None:intergenic
ATTCATGCAAACAATAAAAG+AGG 0.505265 8.4:+11423356 MS.gene030123:CDS
AGAAGCAAATCTGTTATTTG+TGG 0.511224 8.4:+11421450 MS.gene030123:intron
GAAAGAAACATAGGAATTGG+AGG 0.516254 8.4:-11420799 None:intergenic
ATAGCAGGAGAAAGCTATGC+TGG 0.522630 8.4:+11421718 MS.gene030123:CDS
CCTGGATGCTCCTCAATTGG+AGG 0.524976 8.4:+11421175 MS.gene030123:CDS
AGAAGGAGAGGTTTATTGGA+GGG 0.531052 8.4:-11421019 None:intergenic
AACAGCACCACCTCCAATTG+AGG 0.533589 8.4:-11421185 None:intergenic
AACCTTGATTCCAAGAGTAT+GGG 0.534967 8.4:-11421261 None:intergenic
GGATGCTCCTCAATTGGAGG+TGG 0.540729 8.4:+11421178 MS.gene030123:CDS
GGTGGTGTTGAAGGTTGTCC+TGG 0.542192 8.4:-11420911 None:intergenic
ATTTCCACAGTTTAAATCCA+GGG 0.543200 8.4:+11421687 MS.gene030123:CDS
TTGATGAGTTTAGTGTAGAT+GGG 0.551996 8.4:-11423533 None:intergenic
CTCCTTCTCTGGCTCAATGG+AGG 0.555785 8.4:+11421034 MS.gene030123:CDS
GTACTATTTAAACGACATGC+GGG 0.564081 8.4:-11423053 None:intergenic
TAGTTAAAAGAAAGAAACAT+AGG 0.564235 8.4:-11420808 None:intergenic
TCTAACGTGGTAAATACGTC+GGG 0.565554 8.4:-11423776 None:intergenic
TGAGTTTAGTGTAGATGGGT+AGG 0.572734 8.4:-11423529 None:intergenic
AAGATTAACTCTGCAAGCTG+AGG 0.573791 8.4:-11422122 None:intergenic
CCTGAAAAGTGTGAAATTGG+TGG 0.577902 8.4:-11420929 None:intergenic
GAGAAGGAGAGGTTTATTGG+AGG 0.580591 8.4:-11421020 None:intergenic
CCATTGAGCCAGAGAAGGAG+AGG 0.585851 8.4:-11421031 None:intergenic
AAGGCATTGTAGAATATGCA+TGG 0.587542 8.4:+11422883 MS.gene030123:CDS
TACTATTTAAACGACATGCG+GGG 0.590382 8.4:-11423052 None:intergenic
AGATTAACTCTGCAAGCTGA+GGG 0.592878 8.4:-11422121 None:intergenic
ATCACTGTCAATGAAGAACA+TGG 0.603450 8.4:+11420956 MS.gene030123:CDS
AACAGTAAAATAGAATGGAA+GGG 0.604804 8.4:+11423380 MS.gene030123:CDS
GACCTCCATTGAGCCAGAGA+AGG 0.612178 8.4:-11421036 None:intergenic
TGTCCCTGAATCACTTACAA+AGG 0.613252 8.4:+11423094 MS.gene030123:CDS
AAGTCCCTGGATTTAAACTG+TGG 0.613586 8.4:-11421691 None:intergenic
ATCATGGAAGAGTTGGTCCA+TGG 0.615467 8.4:-11422997 None:intergenic
TGTACTATTTAAACGACATG+CGG 0.618707 8.4:-11423054 None:intergenic
TGTCAATGAAGAACATGGGA+GGG 0.629032 8.4:+11420961 MS.gene030123:CDS
ATCTAACGTGGTAAATACGT+CGG 0.632500 8.4:-11423777 None:intergenic
TCTGCATATATCGAATAACA+AGG 0.641936 8.4:-11423299 None:intergenic
CTGTCAATGAAGAACATGGG+AGG 0.644245 8.4:+11420960 MS.gene030123:CDS
GATAGAATAATTTATCTACC+AGG 0.658091 8.4:+11420893 MS.gene030123:CDS
TACACTAAACTCATCAAGGG+TGG 0.663458 8.4:+11423539 MS.gene030123:CDS
AAAATGGTTATAGAATGAAG+AGG 0.675613 8.4:+11423252 MS.gene030123:CDS
ATCTACACTAAACTCATCAA+GGG 0.676828 8.4:+11423536 MS.gene030123:CDS
TCACTGTCAATGAAGAACAT+GGG 0.682088 8.4:+11420957 MS.gene030123:CDS
CTGCATATATCGAATAACAA+GGG 0.684812 8.4:-11423298 None:intergenic
ACTATTTAAACGACATGCGG+GGG 0.697817 8.4:-11423051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTCAATATTCTAT+AGG - chr8.4:11423448-11423467 None:intergenic 10.0%
!!! ATATATTTTTTTTTCATCTT+TGG + chr8.4:11421285-11421304 MS.gene030123:intron 10.0%
!! AAATGGTCAAAAAAATTATA+GGG + chr8.4:11421959-11421978 MS.gene030123:intron 15.0%
!! AAATTACAATAAAGCAAATT+AGG - chr8.4:11421417-11421436 None:intergenic 15.0%
!! ATCTTATCTTATATATACAA+TGG - chr8.4:11421559-11421578 None:intergenic 15.0%
!! TCAAAATACTTATAACTAAA+AGG - chr8.4:11422044-11422063 None:intergenic 15.0%
!!! AAAACCTTTAAGATTAATAA+AGG - chr8.4:11422177-11422196 None:intergenic 15.0%
!!! AAACCTTTAAGATTAATAAA+GGG - chr8.4:11422176-11422195 None:intergenic 15.0%
!!! AAGTAGTTTGTAATTAAATA+TGG - chr8.4:11421620-11421639 None:intergenic 15.0%
!!! CTAATTATTATTTCTATGTA+TGG + chr8.4:11421081-11421100 MS.gene030123:intron 15.0%
!! AATCCCTTTATTAATCTTAA+AGG + chr8.4:11422170-11422189 MS.gene030123:CDS 20.0%
!! CAAAAAAGAACGAATAATTA+AGG + chr8.4:11422220-11422239 MS.gene030123:intron 20.0%
!! GAAATGGTCAAAAAAATTAT+AGG + chr8.4:11421958-11421977 MS.gene030123:intron 20.0%
!! GATGATTACTATGATTATAA+AGG + chr8.4:11422864-11422883 MS.gene030123:CDS 20.0%
!! GTTATGTTTACAACATTTAT+TGG - chr8.4:11421382-11421401 None:intergenic 20.0%
!! TAAAAGGTAAAAACTAGAAA+TGG + chr8.4:11421942-11421961 MS.gene030123:intron 20.0%
!! TAGTTAAAAGAAAGAAACAT+AGG - chr8.4:11420811-11420830 None:intergenic 20.0%
!! TATAGATGAATAGTTCATTT+AGG - chr8.4:11422817-11422836 None:intergenic 20.0%
!!! AAATAGTGGTAATGAAAATT+TGG - chr8.4:11422086-11422105 None:intergenic 20.0%
!!! CAAAAAGTAGTTTAAGTTTA+GGG + chr8.4:11423207-11423226 MS.gene030123:intron 20.0%
!!! CTATTCATCTATATATTTTC+AGG + chr8.4:11422824-11422843 MS.gene030123:intron 20.0%
!!! CTTAATTATTCGTTCTTTTT+TGG - chr8.4:11422222-11422241 None:intergenic 20.0%
!!! TAATCTAATTGTGTTGATTT+TGG + chr8.4:11421583-11421602 MS.gene030123:intron 20.0%
!!! TAGTTTGTAATTAAATATGG+TGG - chr8.4:11421617-11421636 None:intergenic 20.0%
!!! TCAAAAAGTAGTTTAAGTTT+AGG + chr8.4:11423206-11423225 MS.gene030123:intron 20.0%
!!! TTGATTTTTATGAAATAGTG+AGG - chr8.4:11421848-11421867 None:intergenic 20.0%
!!! TTTAAGTTTAGGGAAAATTT+GGG + chr8.4:11423217-11423236 MS.gene030123:intron 20.0%
! AAAATGGTTATAGAATGAAG+AGG + chr8.4:11423252-11423271 MS.gene030123:CDS 25.0%
! AAACAGTAAAATAGAATGGA+AGG + chr8.4:11423379-11423398 MS.gene030123:CDS 25.0%
! AAAGAAAGAAACATAGGAAT+TGG - chr8.4:11420805-11420824 None:intergenic 25.0%
! AAATAAAATCGATTGTCGTT+TGG + chr8.4:11423643-11423662 MS.gene030123:intron 25.0%
! AACAGTAAAATAGAATGGAA+GGG + chr8.4:11423380-11423399 MS.gene030123:CDS 25.0%
! ACGAATAATTAAGGAGAATA+AGG + chr8.4:11422229-11422248 MS.gene030123:intron 25.0%
! ATTCATGCAAACAATAAAAG+AGG + chr8.4:11423356-11423375 MS.gene030123:CDS 25.0%
! CGAATAATTAAGGAGAATAA+GGG + chr8.4:11422230-11422249 MS.gene030123:intron 25.0%
! GATAGAATAATTTATCTACC+AGG + chr8.4:11420893-11420912 MS.gene030123:CDS 25.0%
! GCCAAAAAAAAAAATTCACA+AGG - chr8.4:11422438-11422457 None:intergenic 25.0%
! GTCTATCACAATCATTTATA+GGG - chr8.4:11422624-11422643 None:intergenic 25.0%
! TAATTTAATCCCGAAATTCA+CGG + chr8.4:11422362-11422381 MS.gene030123:intron 25.0%
! TGTCAATTTCTGAATAATCA+TGG - chr8.4:11423016-11423035 None:intergenic 25.0%
! TTTATAAAATCGAGTGTTTG+CGG - chr8.4:11421926-11421945 None:intergenic 25.0%
!! AATTTGAGATCTTACAAGTT+TGG - chr8.4:11421986-11422005 None:intergenic 25.0%
!! CAAACACTCGATTTTATAAA+AGG + chr8.4:11421926-11421945 MS.gene030123:intron 25.0%
!! GTGATTTTAAACAATTTCGA+TGG + chr8.4:11422955-11422974 MS.gene030123:CDS 25.0%
!! GTTTAAGTTTAGGGAAAATT+TGG + chr8.4:11423216-11423235 MS.gene030123:intron 25.0%
!!! ATGCAGAAGAATTTTTCAAT+AGG + chr8.4:11423315-11423334 MS.gene030123:CDS 25.0%
!!! ATTTTAGAGGATCATTTTGT+GGG + chr8.4:11421526-11421545 MS.gene030123:CDS 25.0%
!!! CATCTATATATTTTCAGGTA+GGG + chr8.4:11422829-11422848 MS.gene030123:intron 25.0%
!!! GCCTTGTGAATTTTTTTTTT+TGG + chr8.4:11422434-11422453 MS.gene030123:intron 25.0%
!!! TATTTTAGAGGATCATTTTG+TGG + chr8.4:11421525-11421544 MS.gene030123:CDS 25.0%
!!! TCATCTATATATTTTCAGGT+AGG + chr8.4:11422828-11422847 MS.gene030123:intron 25.0%
!!! TGCAGAAGAATTTTTCAATA+GGG + chr8.4:11423316-11423335 MS.gene030123:CDS 25.0%
!!! TTTCATTACCACTATTTTTC+AGG + chr8.4:11422089-11422108 MS.gene030123:intron 25.0%
AAGTAAGCACTACAATTTGA+TGG + chr8.4:11423407-11423426 MS.gene030123:intron 30.0%
ACCTGTAAATCCATATCTTA+AGG - chr8.4:11423565-11423584 None:intergenic 30.0%
ATCTACACTAAACTCATCAA+GGG + chr8.4:11423536-11423555 MS.gene030123:CDS 30.0%
ATGTACGCAATACTATATTG+AGG - chr8.4:11423705-11423724 None:intergenic 30.0%
ATTTCCACAGTTTAAATCCA+GGG + chr8.4:11421687-11421706 MS.gene030123:CDS 30.0%
CGTCTATCACAATCATTTAT+AGG - chr8.4:11422625-11422644 None:intergenic 30.0%
CTGCATATATCGAATAACAA+GGG - chr8.4:11423301-11423320 None:intergenic 30.0%
GAGGAAACAGTAAAATAGAA+TGG + chr8.4:11423375-11423394 MS.gene030123:CDS 30.0%
GCCACATTTACTTATATTGA+AGG - chr8.4:11422329-11422348 None:intergenic 30.0%
GCCTTCAATATAAGTAAATG+TGG + chr8.4:11422325-11422344 MS.gene030123:intron 30.0%
GCTGGTTAGTGTTTATATTT+GGG + chr8.4:11421736-11421755 MS.gene030123:intron 30.0%
TAAAAGTAAAGTTGAGAGAG+TGG - chr8.4:11423599-11423618 None:intergenic 30.0%
TAAAATTCAACCCATACTCT+TGG + chr8.4:11421251-11421270 MS.gene030123:CDS 30.0%
TAGGCAATGAAATCATTTAG+AGG - chr8.4:11422798-11422817 None:intergenic 30.0%
TATAGTGACCTGAAAAATAG+TGG - chr8.4:11422100-11422119 None:intergenic 30.0%
TATGAAAAACCAACTCCAAT+GGG - chr8.4:11421481-11421500 None:intergenic 30.0%
TCATAGTAATCATCAGTTTC+TGG - chr8.4:11422858-11422877 None:intergenic 30.0%
TCTGCATATATCGAATAACA+AGG - chr8.4:11423302-11423321 None:intergenic 30.0%
TGTACTATTTAAACGACATG+CGG - chr8.4:11423057-11423076 None:intergenic 30.0%
TTACCTTTGTAAGTGATTCA+GGG - chr8.4:11423100-11423119 None:intergenic 30.0%
TTGATGAGTTTAGTGTAGAT+GGG - chr8.4:11423536-11423555 None:intergenic 30.0%
TTTACCTTTGTAAGTGATTC+AGG - chr8.4:11423101-11423120 None:intergenic 30.0%
! AGAAGAAGCAATTTTGTCTT+TGG - chr8.4:11422680-11422699 None:intergenic 30.0%
! AGAAGCAAATCTGTTATTTG+TGG + chr8.4:11421450-11421469 MS.gene030123:intron 30.0%
! CCTCTTTTAGTCAACAAAAA+CGG + chr8.4:11421220-11421239 MS.gene030123:CDS 30.0%
! CTTCATGAACAGTGTATTTT+AGG - chr8.4:11422415-11422434 None:intergenic 30.0%
! TAACCTGAAAAGTGTGAAAT+TGG - chr8.4:11420935-11420954 None:intergenic 30.0%
! TGCTGGTTAGTGTTTATATT+TGG + chr8.4:11421735-11421754 MS.gene030123:intron 30.0%
!! GATGTCGTAAGTATTGAATA+TGG - chr8.4:11423495-11423514 None:intergenic 30.0%
!! TTCTGATCTCACTATTTTAG+AGG + chr8.4:11421513-11421532 MS.gene030123:CDS 30.0%
!!! TTACGACATCTCTGTTTTTT+CGG + chr8.4:11423505-11423524 MS.gene030123:CDS 30.0%
AAAAACTCTTTCGCTGCATA+TGG - chr8.4:11422288-11422307 None:intergenic 35.0%
AAACCTTGATTCCAAGAGTA+TGG - chr8.4:11421265-11421284 None:intergenic 35.0%
ATCACTGTCAATGAAGAACA+TGG + chr8.4:11420956-11420975 MS.gene030123:CDS 35.0%
ATCTTGATTGCCGTGAATTT+CGG - chr8.4:11422375-11422394 None:intergenic 35.0%
ATGGATTTACAGGTATCTCT+TGG + chr8.4:11423571-11423590 MS.gene030123:intron 35.0%
CATCTACACTAAACTCATCA+AGG + chr8.4:11423535-11423554 MS.gene030123:CDS 35.0%
CCAATTCACCAAGAAATTGT+AGG - chr8.4:11421659-11421678 None:intergenic 35.0%
CCTACAATTTCTTGGTGAAT+TGG + chr8.4:11421656-11421675 MS.gene030123:CDS 35.0%
CTGAATAATCATGGAAGAGT+TGG - chr8.4:11423007-11423026 None:intergenic 35.0%
CTTGATGAGTTTAGTGTAGA+TGG - chr8.4:11423537-11423556 None:intergenic 35.0%
GAAAGAAACATAGGAATTGG+AGG - chr8.4:11420802-11420821 None:intergenic 35.0%
GATTTCCACAGTTTAAATCC+AGG + chr8.4:11421686-11421705 MS.gene030123:CDS 35.0%
GCCTTAAGATATGGATTTAC+AGG + chr8.4:11423561-11423580 MS.gene030123:CDS 35.0%
GTACTATTTAAACGACATGC+GGG - chr8.4:11423056-11423075 None:intergenic 35.0%
GTATGAAAAACCAACTCCAA+TGG - chr8.4:11421482-11421501 None:intergenic 35.0%
TACTATTTAAACGACATGCG+GGG - chr8.4:11423055-11423074 None:intergenic 35.0%
TCACTGTCAATGAAGAACAT+GGG + chr8.4:11420957-11420976 MS.gene030123:CDS 35.0%
TTAGTCAACAAAAACGGTGA+AGG + chr8.4:11421226-11421245 MS.gene030123:CDS 35.0%
! AACCTTGATTCCAAGAGTAT+GGG - chr8.4:11421264-11421283 None:intergenic 35.0%
! AGTGAGATCAGAAGAAGTAT+TGG - chr8.4:11421506-11421525 None:intergenic 35.0%
! ATGAAGAGGATGAGAACTTT+TGG + chr8.4:11423266-11423285 MS.gene030123:CDS 35.0%
! TAACAGATTTGCTTCTGCAT+AGG - chr8.4:11421446-11421465 None:intergenic 35.0%
! TGAAGAGGATGAGAACTTTT+GGG + chr8.4:11423267-11423286 MS.gene030123:CDS 35.0%
!! AAGGCATTGTAGAATATGCA+TGG + chr8.4:11422883-11422902 MS.gene030123:CDS 35.0%
!! CCGTTTTTGTTGACTAAAAG+AGG - chr8.4:11421223-11421242 None:intergenic 35.0%
AACCCATACTCTTGGAATCA+AGG + chr8.4:11421259-11421278 MS.gene030123:CDS 40.0%
AAGATTAACTCTGCAAGCTG+AGG - chr8.4:11422125-11422144 None:intergenic 40.0%
AAGTCCCTGGATTTAAACTG+TGG - chr8.4:11421694-11421713 None:intergenic 40.0%
ACTATTTAAACGACATGCGG+GGG - chr8.4:11423054-11423073 None:intergenic 40.0%
AGAAGGAGAGGTTTATTGGA+GGG - chr8.4:11421022-11421041 None:intergenic 40.0%
AGATTAACTCTGCAAGCTGA+GGG - chr8.4:11422124-11422143 None:intergenic 40.0%
ATGGTCTAATGAGTGCTTTC+AGG + chr8.4:11422974-11422993 MS.gene030123:CDS 40.0%
CAAACTACTTGAATCAGCTG+AGG + chr8.4:11421630-11421649 MS.gene030123:intron 40.0%
GAAATTCACGGCAATCAAGA+TGG + chr8.4:11422374-11422393 MS.gene030123:intron 40.0%
TACACTAAACTCATCAAGGG+TGG + chr8.4:11423539-11423558 MS.gene030123:CDS 40.0%
TCTTGATTGCCGTGAATTTC+GGG - chr8.4:11422374-11422393 None:intergenic 40.0%
TGAGGATGCCTACAATTTCT+TGG + chr8.4:11421648-11421667 MS.gene030123:CDS 40.0%
TGAGTTTAGTGTAGATGGGT+AGG - chr8.4:11423532-11423551 None:intergenic 40.0%
TGTCAATGAAGAACATGGGA+GGG + chr8.4:11420961-11420980 MS.gene030123:CDS 40.0%
TGTCCCTGAATCACTTACAA+AGG + chr8.4:11423094-11423113 MS.gene030123:CDS 40.0%
TTATTTGTGGAGTCACCCAT+TGG + chr8.4:11421463-11421482 MS.gene030123:CDS 40.0%
TTGGAGGACAGACAGAAAAA+CGG - chr8.4:11420786-11420805 None:intergenic 40.0%
! AAGAGGATGAGAACTTTTGG+GGG + chr8.4:11423269-11423288 MS.gene030123:CDS 40.0%
! AGGGACATTTTTCGTTTCTG+TGG - chr8.4:11423081-11423100 None:intergenic 40.0%
! CCACCAATTTCACACTTTTC+AGG + chr8.4:11420929-11420948 MS.gene030123:CDS 40.0%
! CCTGAAAAGTGTGAAATTGG+TGG - chr8.4:11420932-11420951 None:intergenic 40.0%
! GAAGAGGATGAGAACTTTTG+GGG + chr8.4:11423268-11423287 MS.gene030123:CDS 40.0%
!! GAAGGCTTCATAAGAGTGTT+CGG - chr8.4:11422311-11422330 None:intergenic 40.0%
!! TGTGAAATTGGTGGTGTTGA+AGG - chr8.4:11420923-11420942 None:intergenic 40.0%
!!! TGTCATTTTGCCTTTGAGTC+AGG + chr8.4:11421151-11421170 MS.gene030123:intron 40.0%
AGGGAAAATTTGGGTCTTGC+AGG + chr8.4:11423226-11423245 MS.gene030123:intron 45.0%
ATAGCAGGAGAAAGCTATGC+TGG + chr8.4:11421718-11421737 MS.gene030123:CDS 45.0%
ATTCACGGCAATCAAGATGG+TGG + chr8.4:11422377-11422396 MS.gene030123:intron 45.0%
CCAATAAACCTCTCCTTCTC+TGG + chr8.4:11421023-11421042 MS.gene030123:CDS 45.0%
CCAGAGAAGGAGAGGTTTAT+TGG - chr8.4:11421026-11421045 None:intergenic 45.0%
CTGTCAATGAAGAACATGGG+AGG + chr8.4:11420960-11420979 MS.gene030123:CDS 45.0%
GAGAAGGAGAGGTTTATTGG+AGG - chr8.4:11421023-11421042 None:intergenic 45.0%
TAATGAGTGCTTTCAGGCCA+TGG + chr8.4:11422980-11422999 MS.gene030123:CDS 45.0%
TCCTGCTATGAAAAAGTCCC+TGG - chr8.4:11421707-11421726 None:intergenic 45.0%
TGGGTCTTGCAGGTGAAAAA+TGG + chr8.4:11423236-11423255 MS.gene030123:intron 45.0%
! ATCATGGAAGAGTTGGTCCA+TGG - chr8.4:11423000-11423019 None:intergenic 45.0%
! ATGGGAGGGCTCTTTTCTAT+TGG + chr8.4:11420975-11420994 MS.gene030123:CDS 45.0%
! TCAAGGGTGGCCTTAAGATA+TGG + chr8.4:11423552-11423571 MS.gene030123:CDS 45.0%
!!! TCCAGGGACTTTTTCATAGC+AGG + chr8.4:11421703-11421722 MS.gene030123:CDS 45.0%
!!! AATATTATAAATTGTTTTTT+TGG - chr8.4:11422717-11422736 None:intergenic 5.0%
AACAGCACCACCTCCAATTG+AGG - chr8.4:11421188-11421207 None:intergenic 50.0%
AGTGTTTGCGGTCACGACAA+AGG - chr8.4:11421914-11421933 None:intergenic 50.0%
TTTGCCTTTGAGTCAGGACC+TGG + chr8.4:11421157-11421176 MS.gene030123:intron 50.0%
!! GGTGGTGCTGTTGTTGAGAT+AGG + chr8.4:11421196-11421215 MS.gene030123:CDS 50.0%
CCATTGAGCCAGAGAAGGAG+AGG - chr8.4:11421034-11421053 None:intergenic 55.0%
CCTGGATGCTCCTCAATTGG+AGG + chr8.4:11421175-11421194 MS.gene030123:CDS 55.0%
GACCTCCATTGAGCCAGAGA+AGG - chr8.4:11421039-11421058 None:intergenic 55.0%
GCATCCAGGTCCTGACTCAA+AGG - chr8.4:11421164-11421183 None:intergenic 55.0%
GGACCTGGATGCTCCTCAAT+TGG + chr8.4:11421172-11421191 MS.gene030123:intron 55.0%
GGATGCTCCTCAATTGGAGG+TGG + chr8.4:11421178-11421197 MS.gene030123:CDS 55.0%
GTGGAGTCACCCATTGGAGT+TGG + chr8.4:11421469-11421488 MS.gene030123:CDS 55.0%
! CACGGCAATCAAGATGGTGG+TGG + chr8.4:11422380-11422399 MS.gene030123:intron 55.0%
! CCTCTCCTTCTCTGGCTCAA+TGG + chr8.4:11421031-11421050 MS.gene030123:CDS 55.0%
! CTCCTTCTCTGGCTCAATGG+AGG + chr8.4:11421034-11421053 MS.gene030123:CDS 55.0%
! GGTGGTGTTGAAGGTTGTCC+TGG - chr8.4:11420914-11420933 None:intergenic 55.0%
!! CCTCCAATTGAGGAGCATCC+AGG - chr8.4:11421178-11421197 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 11420779 11423792 11420779 ID=MS.gene030123
chr8.4 mRNA 11420779 11423792 11420779 ID=MS.gene030123.t1;Parent=MS.gene030123
chr8.4 exon 11420779 11421055 11420779 ID=MS.gene030123.t1.exon1;Parent=MS.gene030123.t1
chr8.4 CDS 11420779 11421055 11420779 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11421173 11421280 11421173 ID=MS.gene030123.t1.exon2;Parent=MS.gene030123.t1
chr8.4 CDS 11421173 11421280 11421173 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11421452 11421547 11421452 ID=MS.gene030123.t1.exon3;Parent=MS.gene030123.t1
chr8.4 CDS 11421452 11421547 11421452 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11421647 11421739 11421647 ID=MS.gene030123.t1.exon4;Parent=MS.gene030123.t1
chr8.4 CDS 11421647 11421739 11421647 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11422111 11422199 11422111 ID=MS.gene030123.t1.exon5;Parent=MS.gene030123.t1
chr8.4 CDS 11422111 11422199 11422111 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11422846 11423115 11422846 ID=MS.gene030123.t1.exon6;Parent=MS.gene030123.t1
chr8.4 CDS 11422846 11423115 11422846 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11423248 11423408 11423248 ID=MS.gene030123.t1.exon7;Parent=MS.gene030123.t1
chr8.4 CDS 11423248 11423408 11423248 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11423487 11423582 11423487 ID=MS.gene030123.t1.exon8;Parent=MS.gene030123.t1
chr8.4 CDS 11423487 11423582 11423487 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
chr8.4 exon 11423713 11423792 11423713 ID=MS.gene030123.t1.exon9;Parent=MS.gene030123.t1
chr8.4 CDS 11423713 11423792 11423713 ID=cds.MS.gene030123.t1;Parent=MS.gene030123.t1
Gene Sequence

>MS.gene030123

ATGACCGTTTTTCTGTCTGTCCTCCAATTCCTATGTTTCTTTCTTTTAACTATTACTACTACTTACTCATTGTTCATTGAAGCATCTGAAATAAATGTTGAAAGCTATGAATATGATAGAATAATTTATCTACCAGGACAACCTTCAACACCACCAATTTCACACTTTTCAGGTTACATCACTGTCAATGAAGAACATGGGAGGGCTCTTTTCTATTGGTTCTTTGAAGCTCAGTCTGAACCCTCCAATAAACCTCTCCTTCTCTGGCTCAATGGAGGTCTTTCATCATTTCATTTTTGTAACTAATTATTATTTCTATGTATGGTTATAGAGTTCTAGTCATTTTTATTTAGTGATGCTACTTTTCATTTTTGTCATTTTGCCTTTGAGTCAGGACCTGGATGCTCCTCAATTGGAGGTGGTGCTGTTGTTGAGATAGGACCTCTTTTAGTCAACAAAAACGGTGAAGGACTAAAATTCAACCCATACTCTTGGAATCAAGGTTTATATATTTTTTTTTCATCTTTGGACAATGAAGTATATAATATATGTTTGTTTGATATATTTGACTATCTAAGTTTGTATACTATTTTTGATGTGCCAATAAATGTTGTAAACATAACAAGAAGAATAATCCTAATTTGCTTTATTGTAATTTTTTCAACCTATGCAGAAGCAAATCTGTTATTTGTGGAGTCACCCATTGGAGTTGGTTTTTCATACACCAATACTTCTTCTGATCTCACTATTTTAGAGGATCATTTTGTGGGTGAGTTTCCATTGTATATATAAGATAAGATCATCTAATCTAATTGTGTTGATTTTGGTAAAGTCACCACCATATTTAATTACAAACTACTTGAATCAGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTTCCACAGTTTAAATCCAGGGACTTTTTCATAGCAGGAGAAAGCTATGCTGGTTAGTGTTTATATTTGGGTTAAATATTGTTGTAGTCTCTAATAGAAAATATAATTTTTTATTTTATTTTAGTGCATATAACTGATTTAGTTAAACTTAGCTAGTCCTCACTATTTCATAAAAATCAATATTTTTAGTTCATATATCTTTTATAATAACAGTGCTTTTTGTCCTTTGTCGTGACCGCAAACACTCGATTTTATAAAAGGTAAAAACTAGAAATGGTCAAAAAAATTATAGGGACCAAACTTGTAAGATCTCAAATTTTATACACTAAAAGCATATTTAATTTTTATTTTAACCTTTTAGTTATAAGTATTTTGAATAAACATATATTGTATAACCAAATTTTCATTACCACTATTTTTCAGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGACAGAAACAAAGATAGAAGCAAAAATCCCTTTATTAATCTTAAAGGTTTTATTGTAAGTACATCGTGCTTAACCAAAAAAGAACGAATAATTAAGGAGAATAAGGGCATGTTTATTAAAAAAAATCAATTTAGCGCTGCCATATGCAGCGAAAGAGTTTTTCCGAACACTCTTATGAAGCCTTCAATATAAGTAAATGTGGCAAAGCAGTTTTAATAATTTAATCCCGAAATTCACGGCAATCAAGATGGTGGTGGTGTTATGTACCTAAAATACACTGTTCATGAAGCCTTGTGAATTTTTTTTTTTGGCTATATGTAGCATTATTTTTTTTCAATTTTTAAATTACTTTTTTTTTTTTTTTATAAAAAATAAACTATTGAGAGTTTTCATCTATTTGTACTTTTACAAAAAATTGAAAATTTTAAAAAAGACTAAAACTTACTTCAAATGAGAAACTCTTTTGTCTAGCTTTCCCTATAAATGATTGTGATAGACGACATTGTTAAAAAAATGATTTTATTATGACAACCAAAGACAAAATTGCTTCTTCTTTTATTCAACATCTCCAAAAAAACAATTTATAATATTGAATGTAAAAGTCACATTATTTTTATAATATTTAGCAAACAACGATAAACATCATGCACCTCTAAATGATTTCATTGCCTAAATGAACTATTCATCTATATATTTTCAGGTAGGGAATCCAGAAACTGATGATTACTATGATTATAAAGGCATTGTAGAATATGCATGGAGTCATGCAGTAATATCAGATGAGCAATATGACAAAGCAAAACAAGTTTGTGATTTTAAACAATTTCGATGGTCTAATGAGTGCTTTCAGGCCATGGACCAACTCTTCCATGATTATTCAGAAATTGACATATTCAACATTTATGCCCCCGCATGTCGTTTAAATAGTACATCCACAGAAACGAAAAATGTCCCTGAATCACTTACAAAGGTAAATATATTAATGTCACAAATCTATAGATTCTAAATGATAGAGCTGTGCTAATTTTGACAGACAACAAATTAGATCAATTAATCATGCTCAAAAAGTAGTTTAAGTTTAGGGAAAATTTGGGTCTTGCAGGTGAAAAATGGTTATAGAATGAAGAGGATGAGAACTTTTGGGGGCTATGACCCTTGTTATTCGATATATGCAGAAGAATTTTTCAATAGGGTAGATGTTCAGTTATCTATTCATGCAAACAATAAAAGAGGAAACAGTAAAATAGAATGGAAGGGTTGCAAGTAAGCACTACAATTTGATGGATCATTTTATTTTATCCTATAGAATATTGAATATTAATTTTCACACGTGTTTTTCAGTATTTCCATATTCAATACTTACGACATCTCTGTTTTTTCGGTCCTACCCATCTACACTAAACTCATCAAGGGTGGCCTTAAGATATGGATTTACAGGTATCTCTTGGTTCCACTCTCTCAACTTTACTTTTAAATGAATGTCATTTTATAAAAATAAAATAAAATCGATTGTCGTTTGGTGTTTTAAAGTTAAGATTAATTTATTTTAGCTTTATCCTCAATATAGTATTGCGTACATTACTTTTAACAGCAGTGCTATATCTCGCGATTTATATCATAGCGAAATCGTCCCGACGTATTTACCAC
Protein sequence

>MS.gene030123.t1

MTVFLSVLQFLCFFLLTITTTYSLFIEASEINVESYEYDRIIYLPGQPSTPPISHFSGYITVNEEHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGGGAVVEIGPLLVNKNGEGLKFNPYSWNQEANLLFVESPIGVGFSYTNTSSDLTILEDHFVAEDAYNFLVNWLQRFPQFKSRDFFIAGESYAGHYIPQLAELIFDRNKDRSKNPFINLKGFIVGNPETDDYYDYKGIVEYAWSHAVISDEQYDKAKQVCDFKQFRWSNECFQAMDQLFHDYSEIDIFNIYAPACRLNSTSTETKNVPESLTKVKNGYRMKRMRTFGGYDPCYSIYAEEFFNRVDVQLSIHANNKRGNSKIEWKGCNISIFNTYDISVFSVLPIYTKLIKGGLKIWIYSIAYITFNSSAISRDLYHSEIVPTYLP