AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01789.t1 MTR_2g012850 95.992 474 13 1 1 474 1 468 0.0 941
MS.gene01789.t1 MTR_4g089155 84.257 451 67 2 28 474 38 488 0.0 795
MS.gene01789.t1 MTR_2g012860 76.569 478 106 3 1 474 1 476 0.0 764
MS.gene01789.t1 MTR_4g122950 51.685 445 202 6 40 473 37 479 2.44e-165 476
MS.gene01789.t1 MTR_4g122960 50.113 443 210 6 40 473 37 477 3.10e-160 462
MS.gene01789.t1 MTR_4g075150 48.326 478 225 7 1 472 3 464 3.62e-160 462
MS.gene01789.t1 MTR_4g075150 48.319 476 226 6 1 472 3 462 1.21e-159 460
MS.gene01789.t1 MTR_7g013790 46.004 463 246 3 12 473 7 466 1.93e-147 429
MS.gene01789.t1 MTR_1g095560 47.072 444 217 7 36 473 27 458 1.61e-140 411
MS.gene01789.t1 MTR_3g079570 46.804 438 207 7 40 473 77 492 1.23e-134 397
MS.gene01789.t1 MTR_1g095540 45.495 444 224 7 36 473 27 458 1.66e-134 396
MS.gene01789.t1 MTR_3g079600 47.380 439 205 7 40 472 74 492 2.00e-134 397
MS.gene01789.t1 MTR_3g034290 45.538 437 220 5 40 474 73 493 4.37e-134 396
MS.gene01789.t1 MTR_1g095560 44.328 476 215 9 36 473 27 490 5.69e-134 396
MS.gene01789.t1 MTR_1g021010 46.682 437 206 8 42 474 76 489 7.69e-133 393
MS.gene01789.t1 MTR_2g062990 44.548 431 226 6 45 472 43 463 8.44e-132 390
MS.gene01789.t1 MTR_0003s0560 45.119 461 226 6 24 474 47 490 2.29e-131 389
MS.gene01789.t1 MTR_3g079560 45.890 438 212 8 40 473 76 492 3.80e-131 389
MS.gene01789.t1 MTR_2g081620 43.722 446 233 8 37 474 36 471 3.30e-130 385
MS.gene01789.t1 MTR_2g063000 44.009 434 226 9 45 472 42 464 1.56e-129 384
MS.gene01789.t1 MTR_3g079620 44.843 446 213 8 40 473 76 500 3.35e-129 384
MS.gene01789.t1 MTR_3g079590 45.622 434 213 7 40 470 76 489 3.57e-129 384
MS.gene01789.t1 MTR_1g020090 45.413 436 210 6 39 471 87 497 2.29e-128 382
MS.gene01789.t1 MTR_2g062980 44.548 431 226 7 45 472 43 463 3.26e-127 378
MS.gene01789.t1 MTR_1g021020 43.966 464 222 8 14 474 62 490 3.06e-126 376
MS.gene01789.t1 MTR_3g079630 43.848 447 216 8 40 473 76 500 1.72e-120 362
MS.gene01789.t1 MTR_5g072570 41.573 445 240 6 40 473 28 463 3.45e-117 352
MS.gene01789.t1 MTR_3g090130 41.986 443 237 7 40 473 27 458 8.35e-117 351
MS.gene01789.t1 MTR_3g090150 40.541 444 244 6 40 473 32 465 1.61e-114 345
MS.gene01789.t1 MTR_2g063000 40.972 432 211 10 45 472 42 433 1.25e-112 339
MS.gene01789.t1 MTR_2g449850 39.956 458 245 10 28 473 25 464 2.45e-107 327
MS.gene01789.t1 MTR_7g021130 40.498 442 236 9 42 471 31 457 1.47e-105 322
MS.gene01789.t1 MTR_3g434850 38.976 449 236 9 40 472 29 455 1.28e-104 319
MS.gene01789.t1 MTR_1g040370 39.269 438 211 7 39 471 28 415 8.80e-104 316
MS.gene01789.t1 MTR_3g034290 44.886 352 177 4 40 390 73 408 3.90e-103 314
MS.gene01789.t1 MTR_8g099930 39.286 448 243 10 40 473 32 464 1.22e-102 315
MS.gene01789.t1 MTR_3g498755 39.778 450 240 11 40 473 13 447 8.45e-102 312
MS.gene01789.t1 MTR_0003s0560 48.746 279 132 2 24 293 47 323 1.19e-84 265
MS.gene01789.t1 MTR_8g011350 35.729 473 248 18 41 467 30 492 3.90e-74 242
MS.gene01789.t1 MTR_7g051430 32.617 512 272 16 4 467 6 492 4.70e-73 239
MS.gene01789.t1 MTR_1g102130 33.333 447 241 12 40 474 90 491 3.71e-70 231
MS.gene01789.t1 MTR_7g080180 32.495 477 268 15 41 469 27 497 3.76e-69 229
MS.gene01789.t1 MTR_8g011350 33.110 447 247 15 41 443 30 468 1.27e-63 214
MS.gene01789.t1 MTR_4g021520 32.805 442 263 16 42 465 40 465 3.72e-62 209
MS.gene01789.t1 MTR_2g018630 32.346 439 269 16 41 465 36 460 3.31e-58 199
MS.gene01789.t1 MTR_4g021510 32.426 441 260 16 42 462 39 461 1.60e-57 197
MS.gene01789.t1 MTR_7g080180 31.166 446 250 15 41 439 27 462 1.05e-56 195
MS.gene01789.t1 MTR_4g021535 32.127 442 266 17 42 465 36 461 1.19e-56 195
MS.gene01789.t1 MTR_7g051430 32.258 434 222 15 4 390 6 414 2.25e-56 193
MS.gene01789.t1 MTR_3g100420 31.111 450 276 15 40 465 52 491 3.47e-56 194
MS.gene01789.t1 MTR_4g021490 31.696 448 260 18 42 465 40 465 1.44e-55 192
MS.gene01789.t1 MTR_4g021530 31.674 442 268 16 42 465 40 465 1.67e-55 192
MS.gene01789.t1 MTR_4g021520 32.840 405 239 15 42 429 40 428 7.21e-54 186
MS.gene01789.t1 MTR_4g021500 32.135 445 264 17 42 466 40 466 1.57e-53 193
MS.gene01789.t1 MTR_4g021500 30.046 436 270 15 48 465 482 900 2.61e-50 184
MS.gene01789.t1 MTR_4g021500 32.135 445 264 17 42 466 40 466 1.62e-53 193
MS.gene01789.t1 MTR_4g021500 29.302 430 263 15 48 465 482 882 2.79e-47 175
MS.gene01789.t1 MTR_2g018590 29.530 447 279 15 41 465 32 464 6.02e-53 185
MS.gene01789.t1 MTR_2g018600 29.530 447 278 16 41 465 33 464 1.13e-51 182
MS.gene01789.t1 MTR_5g021570 83.654 104 5 1 193 296 270 361 1.58e-50 177
MS.gene01789.t1 MTR_3g045770 29.302 430 271 15 41 454 26 438 4.16e-49 174
MS.gene01789.t1 MTR_4g057570 27.079 469 260 15 31 468 73 490 1.63e-43 160
MS.gene01789.t1 MTR_2g009200 29.099 433 248 16 37 448 23 417 3.26e-42 155
MS.gene01789.t1 MTR_4g021535 28.864 440 236 16 42 465 36 414 1.22e-41 153
MS.gene01789.t1 MTR_1g094155 28.671 429 264 12 52 467 87 486 1.22e-40 152
MS.gene01789.t1 MTR_0075s0010 29.412 374 181 12 40 404 6 305 1.35e-40 148
MS.gene01789.t1 MTR_4g057585 26.667 435 276 13 47 467 87 492 6.84e-40 150
MS.gene01789.t1 MTR_2g018630 30.946 349 220 13 125 465 20 355 1.58e-39 146
MS.gene01789.t1 MTR_2g095730 26.047 430 280 13 52 468 91 495 6.66e-39 147
MS.gene01789.t1 MTR_2g095750 25.792 442 273 12 47 468 92 498 1.07e-38 147
MS.gene01789.t1 MTR_1g050545 27.725 422 258 12 53 458 81 471 1.39e-38 147
MS.gene01789.t1 MTR_4g057595 26.107 429 275 12 52 467 94 493 2.35e-38 146
MS.gene01789.t1 MTR_4g057600 25.400 437 264 12 55 468 95 492 1.07e-35 139
MS.gene01789.t1 MTR_5g097180 27.103 428 257 15 57 466 43 433 1.42e-33 132
MS.gene01789.t1 MTR_4g084710 26.559 433 253 16 57 466 45 435 3.18e-32 128
MS.gene01789.t1 MTR_2g095710 24.434 442 270 15 46 468 85 481 4.82e-26 110
MS.gene01789.t1 MTR_4g056520 24.390 451 277 18 58 472 36 458 2.16e-23 102
MS.gene01789.t1 MTR_1g051175 51.087 92 42 2 49 139 20 109 2.25e-19 88.6
MS.gene01789.t1 MTR_2g084530 25.747 435 263 16 58 458 36 444 7.01e-16 80.1
MS.gene01789.t1 MTR_7g100560 24.281 313 155 9 48 350 65 305 1.73e-15 77.8
MS.gene01789.t1 MTR_4g122970 54.902 51 22 1 39 88 37 87 1.79e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01789.t1 AT1G11080 66.527 478 151 3 6 474 15 492 0.0 661
MS.gene01789.t1 AT1G11080 66.527 478 151 3 6 474 15 492 0.0 660
MS.gene01789.t1 AT1G61130 67.727 440 131 3 40 474 30 463 0.0 629
MS.gene01789.t1 AT4G15100 66.968 442 139 2 40 474 43 484 0.0 610
MS.gene01789.t1 AT5G08260 50.110 453 212 6 30 474 33 479 9.26e-157 454
MS.gene01789.t1 AT4G30610 47.619 441 225 5 36 473 27 464 5.93e-152 441
MS.gene01789.t1 AT5G23210 48.667 450 211 6 40 472 50 496 3.76e-151 440
MS.gene01789.t1 AT2G24000 48.064 439 215 7 36 467 25 457 1.64e-149 434
MS.gene01789.t1 AT3G17180 48.889 450 211 9 37 473 34 477 6.39e-149 434
MS.gene01789.t1 AT2G24010 46.364 440 223 4 36 473 25 453 2.50e-146 426
MS.gene01789.t1 AT3G02110 44.161 471 252 4 7 471 6 471 7.71e-142 415
MS.gene01789.t1 AT2G24010 44.615 455 224 5 36 473 25 468 5.05e-141 413
MS.gene01789.t1 AT2G35780 46.544 434 218 6 35 465 23 445 1.61e-139 409
MS.gene01789.t1 AT3G07990 46.259 441 219 7 39 473 31 459 9.81e-137 402
MS.gene01789.t1 AT3G63470 46.101 436 217 5 40 473 80 499 7.98e-136 401
MS.gene01789.t1 AT4G30810 46.119 438 226 6 39 474 35 464 3.93e-135 398
MS.gene01789.t1 AT2G24010 42.947 475 218 6 41 473 1 464 2.03e-134 396
MS.gene01789.t1 AT5G23210 48.522 406 189 6 40 428 50 452 2.21e-134 396
MS.gene01789.t1 AT3G17180 48.259 402 190 8 38 427 35 430 2.02e-131 387
MS.gene01789.t1 AT2G35770 43.187 477 240 11 4 473 8 460 9.81e-129 381
MS.gene01789.t1 AT5G23210 45.050 404 202 6 86 472 1 401 5.72e-120 357
MS.gene01789.t1 AT5G23210 45.202 396 197 6 94 472 8 400 1.71e-118 353
MS.gene01789.t1 AT2G12480 41.629 442 236 10 40 472 30 458 1.11e-112 340
MS.gene01789.t1 AT3G52020 40.343 466 255 11 15 473 51 500 1.78e-112 341
MS.gene01789.t1 AT3G52000 41.043 441 236 10 38 473 60 481 7.27e-110 334
MS.gene01789.t1 AT2G05850 39.140 442 244 8 40 473 62 486 9.83e-110 333
MS.gene01789.t1 AT1G43780 40.045 447 243 8 39 471 35 470 2.76e-109 332
MS.gene01789.t1 AT5G42240 40.315 444 245 7 40 472 31 465 4.90e-109 331
MS.gene01789.t1 AT2G33530 42.152 446 229 10 40 471 32 462 1.84e-108 330
MS.gene01789.t1 AT1G28110 41.928 446 232 10 38 471 28 458 9.45e-108 328
MS.gene01789.t1 AT1G28110 41.928 446 232 10 38 471 28 458 9.45e-108 328
MS.gene01789.t1 AT3G52010 38.717 452 249 10 31 473 54 486 8.04e-105 321
MS.gene01789.t1 AT2G12480 39.456 441 223 8 40 472 30 434 2.58e-104 318
MS.gene01789.t1 AT5G42230 38.876 445 250 8 40 472 27 461 1.16e-103 317
MS.gene01789.t1 AT5G42230 38.876 445 250 8 40 472 27 461 1.16e-103 317
MS.gene01789.t1 AT2G24010 42.779 367 182 5 41 390 1 356 1.58e-103 313
MS.gene01789.t1 AT2G12480 39.002 441 223 8 40 472 30 432 1.68e-102 313
MS.gene01789.t1 AT5G23210 44.602 352 175 6 94 428 8 356 1.29e-101 308
MS.gene01789.t1 AT2G12480 39.140 442 222 9 40 472 30 433 7.98e-101 309
MS.gene01789.t1 AT2G24000 38.073 436 200 11 36 467 25 394 8.15e-99 303
MS.gene01789.t1 AT4G12910 34.475 467 260 13 41 467 34 494 2.37e-77 250
MS.gene01789.t1 AT3G25420 33.902 469 264 13 41 468 29 492 6.21e-77 249
MS.gene01789.t1 AT4G12910 33.178 428 241 12 41 429 34 455 9.46e-65 216
MS.gene01789.t1 AT3G56540 61.538 156 59 1 40 195 78 232 4.87e-60 198
MS.gene01789.t1 AT1G33540 31.333 450 280 16 37 468 24 462 4.46e-59 201
MS.gene01789.t1 AT2G22990 30.856 444 265 14 37 468 18 431 8.39e-58 197
MS.gene01789.t1 AT2G22920 30.248 443 267 13 37 467 20 432 1.05e-57 197
MS.gene01789.t1 AT1G33540 31.616 427 264 15 59 468 4 419 4.72e-57 195
MS.gene01789.t1 AT3G12203 30.474 443 265 14 37 468 4 414 6.71e-57 194
MS.gene01789.t1 AT3G12203 30.474 443 265 14 37 468 25 435 9.23e-57 194
MS.gene01789.t1 AT1G73270 31.011 445 263 15 37 469 28 440 4.28e-56 193
MS.gene01789.t1 AT1G73270 31.011 445 263 15 37 469 28 440 6.04e-56 192
MS.gene01789.t1 AT1G73280 30.909 440 260 14 41 468 32 439 1.41e-55 191
MS.gene01789.t1 AT1G73300 30.493 446 262 14 37 468 28 439 2.66e-55 191
MS.gene01789.t1 AT1G73300 30.493 446 262 14 37 468 28 439 2.66e-55 191
MS.gene01789.t1 AT1G73290 31.136 440 265 13 37 468 27 436 1.96e-54 188
MS.gene01789.t1 AT3G10450 31.306 444 261 15 37 468 24 435 2.06e-54 188
MS.gene01789.t1 AT2G22970 30.889 450 247 16 41 468 24 431 1.35e-53 186
MS.gene01789.t1 AT2G22990 31.190 420 248 13 37 444 18 408 1.88e-53 185
MS.gene01789.t1 AT2G22990 31.116 421 249 13 37 445 18 409 2.03e-53 186
MS.gene01789.t1 AT3G12220 31.626 449 253 19 37 468 22 433 3.50e-53 185
MS.gene01789.t1 AT2G23010 30.227 440 267 13 41 468 24 435 9.62e-53 184
MS.gene01789.t1 AT5G09640 30.088 452 286 15 37 468 22 463 1.93e-52 184
MS.gene01789.t1 AT5G36180 30.444 450 257 16 37 468 28 439 2.04e-52 183
MS.gene01789.t1 AT1G73310 31.011 445 261 15 37 468 28 439 3.89e-52 182
MS.gene01789.t1 AT2G23010 30.000 440 268 13 41 468 24 435 4.25e-52 182
MS.gene01789.t1 AT2G22990 30.856 444 256 16 37 468 18 422 4.40e-52 182
MS.gene01789.t1 AT2G23000 28.924 446 281 13 33 468 16 435 6.79e-52 181
MS.gene01789.t1 AT2G23000 28.924 446 281 13 33 468 16 435 6.79e-52 181
MS.gene01789.t1 AT2G22980 30.594 438 260 12 41 468 25 428 2.02e-51 180
MS.gene01789.t1 AT3G12203 30.318 409 243 13 70 468 1 377 2.04e-51 179
MS.gene01789.t1 AT3G12230 29.505 444 269 16 37 468 22 433 2.24e-51 180
MS.gene01789.t1 AT2G22920 30.123 405 243 11 37 430 20 395 7.31e-51 178
MS.gene01789.t1 AT3G12240 29.844 449 269 20 33 468 19 434 1.08e-50 178
MS.gene01789.t1 AT3G10450 31.116 421 247 14 59 468 4 392 1.86e-50 177
MS.gene01789.t1 AT2G22970 30.841 428 233 15 41 446 24 410 5.19e-50 177
MS.gene01789.t1 AT2G22970 30.679 427 233 15 41 445 24 409 1.08e-49 175
MS.gene01789.t1 AT3G12220 31.690 426 238 18 59 468 15 403 2.51e-49 174
MS.gene01789.t1 AT3G10450 30.879 421 248 14 37 445 24 413 6.29e-49 173
MS.gene01789.t1 AT2G22980 30.843 415 244 11 41 445 25 406 5.55e-48 171
MS.gene01789.t1 AT1G73290 30.923 401 241 11 37 430 27 398 7.40e-48 170
MS.gene01789.t1 AT2G22980 31.084 415 241 12 41 444 25 405 1.18e-47 170
MS.gene01789.t1 AT1G73310 30.732 410 240 13 37 434 28 405 1.79e-46 167
MS.gene01789.t1 AT3G10450 30.653 398 234 13 59 445 4 370 4.08e-45 162
MS.gene01789.t1 AT3G45010 28.833 437 280 12 47 474 92 506 5.90e-45 164
MS.gene01789.t1 AT1G73290 34.701 268 165 6 37 297 27 291 1.74e-42 153
MS.gene01789.t1 AT5G22980 29.439 428 263 15 52 468 95 494 1.73e-41 155
MS.gene01789.t1 AT2G22920 34.701 268 159 8 37 293 20 282 2.75e-41 150
MS.gene01789.t1 AT1G73280 34.328 268 160 8 41 297 32 294 1.27e-40 150
MS.gene01789.t1 AT3G10410 28.704 432 266 16 47 465 90 492 5.56e-40 151
MS.gene01789.t1 AT2G22970 35.448 268 148 10 41 293 24 281 1.77e-38 142
MS.gene01789.t1 AT2G22990 29.565 345 208 11 130 468 2 317 1.61e-37 140
MS.gene01789.t1 AT1G73280 29.630 351 210 11 124 468 18 337 1.68e-37 140
MS.gene01789.t1 AT2G22990 29.565 345 208 11 130 468 2 317 7.21e-37 138
MS.gene01789.t1 AT2G22980 37.445 227 128 6 41 259 25 245 3.84e-36 137
MS.gene01789.t1 AT3G12220 34.921 252 145 8 37 278 22 264 9.50e-36 137
MS.gene01789.t1 AT5G36180 29.412 357 203 13 124 468 18 337 7.04e-35 133
MS.gene01789.t1 AT5G36180 29.412 357 203 13 124 468 18 337 7.04e-35 133
MS.gene01789.t1 AT1G73280 29.446 343 205 11 132 468 1 312 7.60e-35 132
MS.gene01789.t1 AT5G36180 29.261 352 189 13 124 463 18 321 2.15e-31 123
MS.gene01789.t1 AT1G15000 27.376 442 259 14 48 468 24 424 5.56e-31 124
MS.gene01789.t1 AT1G73310 29.653 317 186 10 124 434 18 303 1.09e-28 115
MS.gene01789.t1 AT5G36180 29.338 317 177 11 124 429 18 298 1.43e-28 115
MS.gene01789.t1 AT2G22980 29.283 321 189 9 130 445 2 289 1.86e-28 114
MS.gene01789.t1 AT5G22960 34.161 161 83 5 47 206 25 163 3.76e-23 97.1
MS.gene01789.t1 AT2G22920 27.027 259 160 7 213 468 22 254 9.20e-23 97.8
MS.gene01789.t1 AT2G27920 25.342 438 269 15 58 460 37 451 2.60e-22 99.8
MS.gene01789.t1 AT2G27920 24.433 397 248 13 95 460 4 379 3.01e-15 77.8
MS.gene01789.t1 AT2G22960 31.655 139 90 4 331 468 48 182 2.93e-13 68.6

Find 99 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATAAGCTTCTTGTAAAT+TGG 0.119064 2.3:+71294268 None:intergenic
TTCTTCACCACCTTTCTTCT+TGG 0.192938 2.3:-71293375 MS.gene01789:CDS
TATTGATCTAAAGGGCATTT+TGG 0.207860 2.3:-71295444 MS.gene01789:intron
GACTTAGGATTTGGCTTTAC+AGG 0.210656 2.3:-71294240 MS.gene01789:intron
TCTTCATTATAAGAAGTTTC+AGG 0.244359 2.3:+71295292 None:intergenic
AAAACCAATGGTTTGTCTTC+AGG 0.265740 2.3:+71296532 None:intergenic
GAACGATCAATCCATGAAAA+TGG 0.268929 2.3:-71295059 MS.gene01789:CDS
CTTACATTTGCTACATTTAG+AGG 0.270221 2.3:-71293444 MS.gene01789:CDS
TTTCAGCTGGACTTAGGATT+TGG 0.302156 2.3:-71294249 MS.gene01789:CDS
AGAAGCAAACATGTTATTCT+TGG 0.302955 2.3:-71295908 MS.gene01789:CDS
GGATGCTCTTCTGTGGGATA+TGG 0.316727 2.3:-71296169 MS.gene01789:CDS
TGAATTGCTTGGTTTAAAAC+AGG 0.334472 2.3:+71293404 None:intergenic
ACCAGCAACGACATATTTAC+TGG 0.346118 2.3:-71294319 MS.gene01789:intron
AAATAAGCTTCTTGTAAATT+GGG 0.354062 2.3:+71294269 None:intergenic
CAAAGCAGACAGAGGTATAC+AGG 0.367598 2.3:+71295098 None:intergenic
TTCCCTTCATATTGATCTAA+AGG 0.375816 2.3:-71295453 MS.gene01789:CDS
TGAAGGGCTTTCTGAACATC+TGG 0.387787 2.3:+71294508 None:intergenic
GGACTCCATTGTTTGGTGAT+AGG 0.390877 2.3:+71293868 None:intergenic
ATGGTCATAATCTAAGGAAT+TGG 0.392950 2.3:-71294477 MS.gene01789:CDS
AAGAATGCTTAAGCTGTATC+TGG 0.392967 2.3:+71293897 None:intergenic
AAACTTCTTATAATGAAGAT+TGG 0.393402 2.3:-71295288 MS.gene01789:CDS
CTATCTTTAAAAGAAACAAT+AGG 0.398884 2.3:+71296721 None:intergenic
CCAGTGATGGTCATAATCTA+AGG 0.405053 2.3:-71294483 MS.gene01789:CDS
TTGGAATCTCCTGTTGGAGT+TGG 0.412688 2.3:-71295889 MS.gene01789:CDS
CAATGGTTTGTCTTCAGGCT+TGG 0.414787 2.3:+71296537 None:intergenic
TCCCTTCATATTGATCTAAA+GGG 0.420892 2.3:-71295452 MS.gene01789:CDS
TACAAGAAGCTTATTTCAGC+TGG 0.422358 2.3:-71294262 MS.gene01789:CDS
TCTTATAATGAAGATTGGTT+AGG 0.433954 2.3:-71295283 MS.gene01789:CDS
AATGCTCTTGTTCTATATGA+TGG 0.436461 2.3:+71295658 None:intergenic
GTTGATTTCCAGCACTATGC+TGG 0.441264 2.3:-71296622 MS.gene01789:CDS
AAAGATAGGAAATGGGGTGG+TGG 0.444295 2.3:-71296706 MS.gene01789:CDS
TAAGAAAATCCAACTCCAAC+AGG 0.446307 2.3:+71295880 None:intergenic
CTGTATCTGGTTGATAGTAC+TGG 0.446777 2.3:+71293910 None:intergenic
CTTCATTATAAGAAGTTTCA+GGG 0.447922 2.3:+71295293 None:intergenic
TTTGCTACATTTAGAGGAGC+TGG 0.454132 2.3:-71293438 MS.gene01789:CDS
AGCTTATTTCAGCTGGACTT+AGG 0.455901 2.3:-71294255 MS.gene01789:CDS
TCAAATTTAATAACTTCTCA+TGG 0.458488 2.3:-71296096 MS.gene01789:CDS
AAGATAGGAAATGGGGTGGT+GGG 0.458772 2.3:-71296705 MS.gene01789:CDS
TCCTAGTTGTGCATATTCAC+TGG 0.461066 2.3:+71295846 None:intergenic
TTTGTCTTCAGGCTTGGTCA+TGG 0.461224 2.3:+71296543 None:intergenic
GCATAGTGCTGGAAATCAAC+AGG 0.461642 2.3:+71296625 None:intergenic
GTAAAACAATGCTCTTCCAT+TGG 0.467790 2.3:+71296579 None:intergenic
GGGTGGTTATGATCCATGTT+TGG 0.468140 2.3:-71294560 MS.gene01789:CDS
TGCCCTTTAGATCAATATGA+AGG 0.468960 2.3:+71295450 None:intergenic
TTATTCTTGGAATCTCCTGT+TGG 0.472255 2.3:-71295895 MS.gene01789:CDS
TAGGAATGGTTGATTATGCT+TGG 0.473229 2.3:-71295264 MS.gene01789:CDS
GTACCAAGGACTCCATTGTT+TGG 0.474466 2.3:+71293861 None:intergenic
TGACTAGATACCAAGGATCA+TGG 0.486990 2.3:-71294581 MS.gene01789:intron
AAATCAACAGGAGGCTGTCC+AGG 0.493021 2.3:+71296637 None:intergenic
CCTTAGATTATGACCATCAC+TGG 0.496669 2.3:+71294483 None:intergenic
GATGAAGCACTCATCTCTAA+TGG 0.499947 2.3:-71295035 MS.gene01789:intron
ATAGCAGGAGAGAGCTATGC+AGG 0.504990 2.3:-71295631 MS.gene01789:intron
TAATGAAGATTGGTTAGGAA+TGG 0.508794 2.3:-71295278 MS.gene01789:CDS
TCACCAAACAATGGAGTCCT+TGG 0.511168 2.3:-71293864 MS.gene01789:CDS
TCATAACCACCCATGATCCT+TGG 0.512919 2.3:+71294571 None:intergenic
TGACATATCCAGCATAGTGC+TGG 0.515412 2.3:+71296614 None:intergenic
GAGTCCTTGGTACCATGAAA+AGG 0.522547 2.3:-71293851 MS.gene01789:CDS
GATCTTGTGACTAACTTACC+TGG 0.525808 2.3:-71296655 MS.gene01789:CDS
AGGACCTGGATGCTCTTCTG+TGG 0.528491 2.3:-71296176 MS.gene01789:CDS
GACTAGATACCAAGGATCAT+GGG 0.534210 2.3:-71294580 MS.gene01789:intron
TATGGAGCAACACAAGAGAT+TGG 0.535698 2.3:-71296151 MS.gene01789:CDS
TATCCCACAGAAGAGCATCC+AGG 0.540620 2.3:+71296172 None:intergenic
ATGACCATCACTGGCATGAA+GGG 0.542541 2.3:+71294492 None:intergenic
TATGACCATCACTGGCATGA+AGG 0.546655 2.3:+71294491 None:intergenic
TTTAGATCAATATGAAGGGA+AGG 0.549003 2.3:+71295455 None:intergenic
TTTAGTGGACACTGATGGCA+AGG 0.549717 2.3:-71296122 MS.gene01789:CDS
ATGATGAGTTCAGCAAGCTC+TGG 0.554264 2.3:+71295494 None:intergenic
CAACTAGGAGATGACTTCAC+AGG 0.559301 2.3:-71295832 MS.gene01789:intron
TATGACAAGTTTCTACACAT+TGG 0.560723 2.3:-71296773 MS.gene01789:CDS
TTTGTGTTGGAATAGGTAAG+TGG 0.569912 2.3:-71293489 MS.gene01789:intron
TGGTGATTCTCCAAGAAGAA+AGG 0.577114 2.3:+71293365 None:intergenic
CCATTAAGCCATAAAACCAA+TGG 0.581362 2.3:+71296520 None:intergenic
GTCACAGTTAATGAAACCAA+TGG 0.581958 2.3:-71296595 MS.gene01789:CDS
GCCCTTTAGATCAATATGAA+GGG 0.582544 2.3:+71295451 None:intergenic
GGATGGTATCAAGAATATGA+AGG 0.583986 2.3:-71293468 MS.gene01789:CDS
ACTTTAACAGTAGTGATCCA+TGG 0.585286 2.3:-71295189 MS.gene01789:CDS
AAAGCCCTTCATGCCAGTGA+TGG 0.587552 2.3:-71294496 MS.gene01789:CDS
CAAGCCTGAAGACAAACCAT+TGG 0.590604 2.3:-71296536 MS.gene01789:CDS
AAGAATGCAAGTGAATTGCT+TGG 0.593143 2.3:+71293393 None:intergenic
AATAACTTCTCATGGAACAA+AGG 0.595826 2.3:-71296088 MS.gene01789:intron
GCAACGACATATTTACTGGA+TGG 0.602098 2.3:-71294315 MS.gene01789:CDS
TTAGATCAATATGAAGGGAA+GGG 0.606553 2.3:+71295456 None:intergenic
TTAGTGGACACTGATGGCAA+GGG 0.606873 2.3:-71296121 MS.gene01789:CDS
TTTAAAGATAGGAAATGGGG+TGG 0.607019 2.3:-71296709 MS.gene01789:CDS
GGACCTGGATGCTCTTCTGT+GGG 0.616671 2.3:-71296175 MS.gene01789:CDS
GAATTGCTTGGTTTAAAACA+GGG 0.617175 2.3:+71293405 None:intergenic
ACCAGTGAATATGCACAACT+AGG 0.646392 2.3:-71295847 MS.gene01789:CDS
TGAAGAATGTACTCATGGTG+TGG 0.649444 2.3:-71295161 MS.gene01789:CDS
TTAGCATAGTCATCCAAACA+TGG 0.653047 2.3:+71294547 None:intergenic
TGTTGGAATAGGTAAGTGGA+TGG 0.657350 2.3:-71293485 MS.gene01789:intron
TTGTTCAGTGGAGACACCGA+CGG 0.662038 2.3:-71293940 MS.gene01789:intron
ACTTGCCTATCACCAAACAA+TGG 0.668398 2.3:-71293873 MS.gene01789:CDS
TGATTCTCCAAGAAGAAAGG+TGG 0.678026 2.3:+71293368 None:intergenic
TCCTTGGTACCATGAAAAGG+AGG 0.682662 2.3:-71293848 MS.gene01789:intron
ATTTGGTTGACTAGATACCA+AGG 0.685043 2.3:-71294588 MS.gene01789:intron
TAGTACTGGAACTCTACCGT+CGG 0.703597 2.3:+71293924 None:intergenic
TGTACTAGCAAAGCAGACAG+AGG 0.704288 2.3:+71295090 None:intergenic
TAGATACCAAGGATCATGGG+TGG 0.707967 2.3:-71294577 MS.gene01789:CDS
TAGTGCTGGAAATCAACAGG+AGG 0.710495 2.3:+71296628 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATCATGAAAAAATA+TGG + chr2.3:71296148-71296167 None:intergenic 10.0%
!! ATAAAATATATTATTTGTCT+AGG - chr2.3:71293897-71293916 MS.gene01789:CDS 10.0%
!!! AAATAATGCTTTTATTTTTT+TGG - chr2.3:71294794-71294813 MS.gene01789:intron 10.0%
!!! AATAATGCTTTTATTTTTTT+GGG - chr2.3:71294795-71294814 MS.gene01789:intron 10.0%
!!! GAATTCATTTTTTTTTTTAT+TGG - chr2.3:71296309-71296328 MS.gene01789:intron 10.0%
!!! TTAATTTTTTTTTAATTGGT+GGG - chr2.3:71293697-71293716 MS.gene01789:intron 10.0%
!!! TTTAATAATTTTCAATCTAT+CGG + chr2.3:71295348-71295367 None:intergenic 10.0%
!!! TTTAATTTTTTTTTAATTGG+TGG - chr2.3:71293696-71293715 MS.gene01789:intron 10.0%
!! AAAATAAGATTCTTTATACT+TGG + chr2.3:71294752-71294771 None:intergenic 15.0%
!! AAAATGTCAATTTAGATTAA+GGG + chr2.3:71295769-71295788 None:intergenic 15.0%
!! AATTAGTATTGTTAATAAAG+AGG - chr2.3:71295971-71295990 MS.gene01789:intron 15.0%
!! ACATATATATAAAACATACT+TGG + chr2.3:71294177-71294196 None:intergenic 15.0%
!! ATGAAAAAATATGGTTTATA+AGG + chr2.3:71296139-71296158 None:intergenic 15.0%
!! TAAAATGTCAATTTAGATTA+AGG + chr2.3:71295770-71295789 None:intergenic 15.0%
!!! AAAAATAATTTGTTTTGTGT+TGG - chr2.3:71296620-71296639 MS.gene01789:CDS 15.0%
!!! ACTTCTTCTAATTTTTTTAT+AGG + chr2.3:71294909-71294928 None:intergenic 15.0%
!!! TAATTTTTTTTTAATTGGTG+GGG - chr2.3:71293698-71293717 MS.gene01789:intron 15.0%
!!! TATTTTAACATTTCTCAAAT+AGG + chr2.3:71293756-71293775 None:intergenic 15.0%
!!! TGTTTTTTTTTGTTATTTAC+AGG - chr2.3:71293926-71293945 MS.gene01789:CDS 15.0%
!! AAACTTCTTATAATGAAGAT+TGG - chr2.3:71294834-71294853 MS.gene01789:intron 20.0%
!! AAATAAGCTTCTTGTAAATT+GGG + chr2.3:71295856-71295875 None:intergenic 20.0%
!! AAATGTTAAAATAGCGAATT+CGG - chr2.3:71293763-71293782 MS.gene01789:intron 20.0%
!! ACATATATTAGTATACTTTG+TGG - chr2.3:71294083-71294102 MS.gene01789:intron 20.0%
!! ACTAATATATGTTATGTTTG+TGG + chr2.3:71294075-71294094 None:intergenic 20.0%
!! ATCAATTAACAATTCTATGT+AGG + chr2.3:71294153-71294172 None:intergenic 20.0%
!! GTACAAAAAAAGTGAAAAAT+AGG + chr2.3:71295693-71295712 None:intergenic 20.0%
!! TCAAATTTAATAACTTCTCA+TGG - chr2.3:71294026-71294045 MS.gene01789:intron 20.0%
!! TCAATTAACAATTCTATGTA+GGG + chr2.3:71294152-71294171 None:intergenic 20.0%
!!! AAATTGTTTATAAGTTTGCT+TGG + chr2.3:71295216-71295235 None:intergenic 20.0%
!!! AATTGTTTATAAGTTTGCTT+GGG + chr2.3:71295215-71295234 None:intergenic 20.0%
!!! ATGTTTTATGATCAATTCAT+GGG + chr2.3:71294588-71294607 None:intergenic 20.0%
!!! ATTTAAAACGAGACTATATA+CGG - chr2.3:71296027-71296046 MS.gene01789:intron 20.0%
!!! CTATCTTTAAAAGAAACAAT+AGG + chr2.3:71293404-71293423 None:intergenic 20.0%
!!! CTATTGTTTCTTTTAAAGAT+AGG - chr2.3:71293402-71293421 MS.gene01789:CDS 20.0%
!!! TATCTTTGTTTTTTGCATAA+TGG - chr2.3:71294330-71294349 MS.gene01789:intron 20.0%
!!! TTCTTTTAAAGATAGGAAAT+GGG - chr2.3:71293409-71293428 MS.gene01789:CDS 20.0%
!!! TTGTAAATATTTTCATCAAG+AGG - chr2.3:71295261-71295280 MS.gene01789:CDS 20.0%
!!! TTTCTTTTAAAGATAGGAAA+TGG - chr2.3:71293408-71293427 MS.gene01789:CDS 20.0%
!!! TTTTATTATGTGTATCATAC+AGG + chr2.3:71293883-71293902 None:intergenic 20.0%
! AAAAATGAAGAATGTACTCA+TGG - chr2.3:71294956-71294975 MS.gene01789:intron 25.0%
! AACAAAATGATCACAAAGTT+CGG - chr2.3:71293823-71293842 MS.gene01789:intron 25.0%
! CTTCATTATAAGAAGTTTCA+GGG + chr2.3:71294832-71294851 None:intergenic 25.0%
! GAAATAAGCTTCTTGTAAAT+TGG + chr2.3:71295857-71295876 None:intergenic 25.0%
! TCTTCATTATAAGAAGTTTC+AGG + chr2.3:71294833-71294852 None:intergenic 25.0%
!! AGCTAGATTTTAAATCTTGT+AGG + chr2.3:71294710-71294729 None:intergenic 25.0%
!! CATGTTTTATGATCAATTCA+TGG + chr2.3:71294589-71294608 None:intergenic 25.0%
!! TCTTATAATGAAGATTGGTT+AGG - chr2.3:71294839-71294858 MS.gene01789:intron 25.0%
!!! AATTTGTTTTGTGTTGGAAT+AGG - chr2.3:71296626-71296645 MS.gene01789:CDS 25.0%
!!! ATTGTTTTACTGGTTTTTTG+AGG - chr2.3:71293556-71293575 MS.gene01789:intron 25.0%
!!! GGTAACAATTTTGTTTCTAA+AGG - chr2.3:71296048-71296067 MS.gene01789:intron 25.0%
!!! TCTTTTAAAGATAGGAAATG+GGG - chr2.3:71293410-71293429 MS.gene01789:CDS 25.0%
AATAACTTCTCATGGAACAA+AGG - chr2.3:71294034-71294053 MS.gene01789:intron 30.0%
AATGCTCTTGTTCTATATGA+TGG + chr2.3:71294467-71294486 None:intergenic 30.0%
AGAAGCAAACATGTTATTCT+TGG - chr2.3:71294214-71294233 MS.gene01789:intron 30.0%
ATCAATCAATTGAGTTCAAG+TGG + chr2.3:71296480-71296499 None:intergenic 30.0%
ATCATTTATGTGGCATACTT+AGG + chr2.3:71296575-71296594 None:intergenic 30.0%
ATGGTCATAATCTAAGGAAT+TGG - chr2.3:71295645-71295664 MS.gene01789:CDS 30.0%
CATTTCCATAAAAAACAGTG+AGG + chr2.3:71294118-71294137 None:intergenic 30.0%
TAGCAAATGCATCATTTATG+TGG + chr2.3:71296585-71296604 None:intergenic 30.0%
TCCCTTCATATTGATCTAAA+GGG - chr2.3:71294670-71294689 MS.gene01789:intron 30.0%
TTAGATCAATATGAAGGGAA+GGG + chr2.3:71294669-71294688 None:intergenic 30.0%
TTCCATTCAGGAATCATATT+CGG - chr2.3:71296416-71296435 MS.gene01789:intron 30.0%
TTCCCTTCATATTGATCTAA+AGG - chr2.3:71294669-71294688 MS.gene01789:intron 30.0%
TTTAGATCAATATGAAGGGA+AGG + chr2.3:71294670-71294689 None:intergenic 30.0%
! CTTACATTTGCTACATTTAG+AGG - chr2.3:71296678-71296697 MS.gene01789:CDS 30.0%
! GAATTGCTTGGTTTAAAACA+GGG + chr2.3:71296720-71296739 None:intergenic 30.0%
! GATCATAAAACATGTTTTGC+AGG - chr2.3:71294595-71294614 MS.gene01789:intron 30.0%
! TAATGAAGATTGGTTAGGAA+TGG - chr2.3:71294844-71294863 MS.gene01789:intron 30.0%
! TGAATTGCTTGGTTTAAAAC+AGG + chr2.3:71296721-71296740 None:intergenic 30.0%
!! ATTGATTTGACTCTTCTTTG+TGG - chr2.3:71295511-71295530 MS.gene01789:intron 30.0%
!! GTACATTCTTCATTTTTCCA+TGG + chr2.3:71294953-71294972 None:intergenic 30.0%
!!! AAGACAAACCATTGGTTTTA+TGG - chr2.3:71293594-71293613 MS.gene01789:intron 30.0%
!!! TATTGATCTAAAGGGCATTT+TGG - chr2.3:71294678-71294697 MS.gene01789:intron 30.0%
!!! TTTTATTTTTTTGGGCAGCT+GGG - chr2.3:71294803-71294822 MS.gene01789:intron 30.0%
!!! TTTTTGTTATTTACAGGACC+TGG - chr2.3:71293932-71293951 MS.gene01789:CDS 30.0%
!!! TTTTTTTCAAATGACACACG+CGG + chr2.3:71295309-71295328 None:intergenic 30.0%
AAGAATGCAAGTGAATTGCT+TGG + chr2.3:71296732-71296751 None:intergenic 35.0%
AAGAATGCTTAAGCTGTATC+TGG + chr2.3:71296228-71296247 None:intergenic 35.0%
ACTTTAACAGTAGTGATCCA+TGG - chr2.3:71294933-71294952 MS.gene01789:intron 35.0%
ATCAAGCTATCCATACATCA+CGG + chr2.3:71296387-71296406 None:intergenic 35.0%
ATTTGGTTGACTAGATACCA+AGG - chr2.3:71295534-71295553 MS.gene01789:intron 35.0%
CCATTAAGCCATAAAACCAA+TGG + chr2.3:71293605-71293624 None:intergenic 35.0%
CTATCGGTCTATTGTAAGAA+AGG + chr2.3:71295332-71295351 None:intergenic 35.0%
CTTCATACTTGATTGTTCAG+TGG - chr2.3:71296170-71296189 MS.gene01789:CDS 35.0%
GAACGATCAATCCATGAAAA+TGG - chr2.3:71295063-71295082 MS.gene01789:CDS 35.0%
GATCAAGAATTGTTCCATTC+AGG - chr2.3:71296404-71296423 MS.gene01789:intron 35.0%
GCCCTTTAGATCAATATGAA+GGG + chr2.3:71294674-71294693 None:intergenic 35.0%
GGATGGTATCAAGAATATGA+AGG - chr2.3:71296654-71296673 MS.gene01789:CDS 35.0%
GGTCAAACTTCGGATTAATA+GGG + chr2.3:71296366-71296385 None:intergenic 35.0%
GTAAAACAATGCTCTTCCAT+TGG + chr2.3:71293546-71293565 None:intergenic 35.0%
GTCACAGTTAATGAAACCAA+TGG - chr2.3:71293527-71293546 MS.gene01789:intron 35.0%
GTGATCAATATTAGAGGAAG+TGG - chr2.3:71295113-71295132 MS.gene01789:CDS 35.0%
TAAGAAAATCCAACTCCAAC+AGG + chr2.3:71294245-71294264 None:intergenic 35.0%
TACAAGAAGCTTATTTCAGC+TGG - chr2.3:71295860-71295879 MS.gene01789:CDS 35.0%
TAGGAATGGTTGATTATGCT+TGG - chr2.3:71294858-71294877 MS.gene01789:intron 35.0%
TCCATTCAGGAATCATATTC+GGG - chr2.3:71296417-71296436 MS.gene01789:intron 35.0%
TGCCCTTTAGATCAATATGA+AGG + chr2.3:71294675-71294694 None:intergenic 35.0%
TGGTGAGTGATCAATATTAG+AGG - chr2.3:71295107-71295126 MS.gene01789:CDS 35.0%
TTAGCATAGTCATCCAAACA+TGG + chr2.3:71295578-71295597 None:intergenic 35.0%
TTATTCTTGGAATCTCCTGT+TGG - chr2.3:71294227-71294246 MS.gene01789:intron 35.0%
TTCCATAAAAAACAGTGAGG+TGG + chr2.3:71294115-71294134 None:intergenic 35.0%
TTGACTCTTCTTTGTGGATT+TGG - chr2.3:71295517-71295536 MS.gene01789:intron 35.0%
TTTAAAGATAGGAAATGGGG+TGG - chr2.3:71293413-71293432 MS.gene01789:CDS 35.0%
TTTATGGCTTAATGGAGGTA+AGG - chr2.3:71293610-71293629 MS.gene01789:intron 35.0%
TTTGTGTTGGAATAGGTAAG+TGG - chr2.3:71296633-71296652 MS.gene01789:CDS 35.0%
! AAAACCAATGGTTTGTCTTC+AGG + chr2.3:71293593-71293612 None:intergenic 35.0%
! ATTTTCGTACCTCCTTTTCA+TGG + chr2.3:71296286-71296305 None:intergenic 35.0%
! CAATGAATTTTTATCCGTCG+AGG - chr2.3:71295160-71295179 MS.gene01789:CDS 35.0%
! CTTACACTTTTCTGCACAAT+TGG - chr2.3:71294429-71294448 MS.gene01789:intron 35.0%
!! AGAGATTGGTCCATTTTTAG+TGG - chr2.3:71293985-71294004 MS.gene01789:intron 35.0%
!!! ACAAGAGCATTTTACATAGC+AGG - chr2.3:71294476-71294495 MS.gene01789:CDS 35.0%
!!! ATCCACCTCACTGTTTTTTA+TGG - chr2.3:71294110-71294129 MS.gene01789:intron 35.0%
!!! ATGGAAGAGCATTGTTTTAC+TGG - chr2.3:71293546-71293565 MS.gene01789:intron 35.0%
!!! CCATTGGTTTTATGGCTTAA+TGG - chr2.3:71293602-71293621 MS.gene01789:intron 35.0%
!!! CTTTTATTTTTTTGGGCAGC+TGG - chr2.3:71294802-71294821 MS.gene01789:intron 35.0%
!!! TTGGTTTTATGGCTTAATGG+AGG - chr2.3:71293605-71293624 MS.gene01789:intron 35.0%
ACCAATTATATATGTGCGCG+TGG - chr2.3:71295907-71295926 MS.gene01789:CDS 40.0%
ACCAGCAACGACATATTTAC+TGG - chr2.3:71295803-71295822 MS.gene01789:intron 40.0%
ACCAGTGAATATGCACAACT+AGG - chr2.3:71294275-71294294 MS.gene01789:CDS 40.0%
ACCCGAATATGATTCCTGAA+TGG + chr2.3:71296421-71296440 None:intergenic 40.0%
ACTTGCCTATCACCAAACAA+TGG - chr2.3:71296249-71296268 MS.gene01789:intron 40.0%
AGCTTATTTCAGCTGGACTT+AGG - chr2.3:71295867-71295886 MS.gene01789:CDS 40.0%
CATACATCACGGTCAAACTT+CGG + chr2.3:71296376-71296395 None:intergenic 40.0%
CCAGTGATGGTCATAATCTA+AGG - chr2.3:71295639-71295658 MS.gene01789:CDS 40.0%
CCATCAGTGTCCACTAAAAA+TGG + chr2.3:71293998-71294017 None:intergenic 40.0%
CCTTAGATTATGACCATCAC+TGG + chr2.3:71295642-71295661 None:intergenic 40.0%
CGGTCAAACTTCGGATTAAT+AGG + chr2.3:71296367-71296386 None:intergenic 40.0%
CTCGAATAATTCGTCCTTGA+TGG - chr2.3:71296444-71296463 MS.gene01789:intron 40.0%
GAAAAAGTCTTCTCGCATGA+TGG + chr2.3:71295392-71295411 None:intergenic 40.0%
GACTAGATACCAAGGATCAT+GGG - chr2.3:71295542-71295561 MS.gene01789:intron 40.0%
GATCTTGTGACTAACTTACC+TGG - chr2.3:71293467-71293486 MS.gene01789:CDS 40.0%
GCAACGACATATTTACTGGA+TGG - chr2.3:71295807-71295826 MS.gene01789:intron 40.0%
GTGGTAAATTAGCTCCATCA+AGG + chr2.3:71296461-71296480 None:intergenic 40.0%
TATGGAGCAACACAAGAGAT+TGG - chr2.3:71293971-71293990 MS.gene01789:intron 40.0%
TCCAGTAAATATGTCGTTGC+TGG + chr2.3:71295807-71295826 None:intergenic 40.0%
TCCTAGTTGTGCATATTCAC+TGG + chr2.3:71294279-71294298 None:intergenic 40.0%
TGAAGAATGTACTCATGGTG+TGG - chr2.3:71294961-71294980 MS.gene01789:intron 40.0%
TGACTAGATACCAAGGATCA+TGG - chr2.3:71295541-71295560 MS.gene01789:intron 40.0%
TGATTCTCCAAGAAGAAAGG+TGG + chr2.3:71296757-71296776 None:intergenic 40.0%
TGGTGATTCTCCAAGAAGAA+AGG + chr2.3:71296760-71296779 None:intergenic 40.0%
TGTTGGAATAGGTAAGTGGA+TGG - chr2.3:71296637-71296656 MS.gene01789:CDS 40.0%
TTCTTCACCACCTTTCTTCT+TGG - chr2.3:71296747-71296766 MS.gene01789:CDS 40.0%
TTTCAGCTGGACTTAGGATT+TGG - chr2.3:71295873-71295892 MS.gene01789:CDS 40.0%
TTTGCTACATTTAGAGGAGC+TGG - chr2.3:71296684-71296703 MS.gene01789:CDS 40.0%
! GATGAAGCACTCATCTCTAA+TGG - chr2.3:71295087-71295106 MS.gene01789:CDS 40.0%
! GTGCTTCATCACCATTTTCA+TGG + chr2.3:71295077-71295096 None:intergenic 40.0%
! TTTTATTGGCGTTAACCCTC+CGG - chr2.3:71296323-71296342 MS.gene01789:intron 40.0%
!! CTGTATCTGGTTGATAGTAC+TGG + chr2.3:71296215-71296234 None:intergenic 40.0%
!! GACTTAGGATTTGGCTTTAC+AGG - chr2.3:71295882-71295901 MS.gene01789:CDS 40.0%
!! TTTTATCCGTCGAGGTGTTA+AGG - chr2.3:71295168-71295187 MS.gene01789:CDS 40.0%
!!! CCATTTTTAGTGGACACTGA+TGG - chr2.3:71293995-71294014 MS.gene01789:intron 40.0%
AAACAGCCTTAACACCTCGA+CGG + chr2.3:71295177-71295196 None:intergenic 45.0%
AAAGATAGGAAATGGGGTGG+TGG - chr2.3:71293416-71293435 MS.gene01789:CDS 45.0%
AAGATAGGAAATGGGGTGGT+GGG - chr2.3:71293417-71293436 MS.gene01789:CDS 45.0%
ATGACCATCACTGGCATGAA+GGG + chr2.3:71295633-71295652 None:intergenic 45.0%
ATGATGAGTTCAGCAAGCTC+TGG + chr2.3:71294631-71294650 None:intergenic 45.0%
CAACTAGGAGATGACTTCAC+AGG - chr2.3:71294290-71294309 MS.gene01789:CDS 45.0%
CAAGCCTGAAGACAAACCAT+TGG - chr2.3:71293586-71293605 MS.gene01789:intron 45.0%
CGAAGTTTGACCGTGATGTA+TGG - chr2.3:71296374-71296393 MS.gene01789:intron 45.0%
GAGTCCTTGGTACCATGAAA+AGG - chr2.3:71296271-71296290 MS.gene01789:intron 45.0%
GCCACGCGCACATATATAAT+TGG + chr2.3:71295911-71295930 None:intergenic 45.0%
GGGTGGTTATGATCCATGTT+TGG - chr2.3:71295562-71295581 MS.gene01789:intron 45.0%
GGTCAATTGTGCTAACGTCT+CGG - chr2.3:71293844-71293863 MS.gene01789:intron 45.0%
GTACCAAGGACTCCATTGTT+TGG + chr2.3:71296264-71296283 None:intergenic 45.0%
TAACGTCTCGGAAAACTAGC+AGG - chr2.3:71293856-71293875 MS.gene01789:CDS 45.0%
TAGATACCAAGGATCATGGG+TGG - chr2.3:71295545-71295564 MS.gene01789:intron 45.0%
TATGACCATCACTGGCATGA+AGG + chr2.3:71295634-71295653 None:intergenic 45.0%
TCACCAAACAATGGAGTCCT+TGG - chr2.3:71296258-71296277 MS.gene01789:intron 45.0%
TCATAACCACCCATGATCCT+TGG + chr2.3:71295554-71295573 None:intergenic 45.0%
TCCTTGGTACCATGAAAAGG+AGG - chr2.3:71296274-71296293 MS.gene01789:intron 45.0%
TGAAGGGCTTTCTGAACATC+TGG + chr2.3:71295617-71295636 None:intergenic 45.0%
TGACATATCCAGCATAGTGC+TGG + chr2.3:71293511-71293530 None:intergenic 45.0%
TGTACTAGCAAAGCAGACAG+AGG + chr2.3:71295035-71295054 None:intergenic 45.0%
TTGGAATCTCCTGTTGGAGT+TGG - chr2.3:71294233-71294252 MS.gene01789:intron 45.0%
! ACCTCCTTTTCATGGTACCA+AGG + chr2.3:71296278-71296297 None:intergenic 45.0%
! CAAAGCAGACAGAGGTATAC+AGG + chr2.3:71295027-71295046 None:intergenic 45.0%
! CAATGGTTTGTCTTCAGGCT+TGG + chr2.3:71293588-71293607 None:intergenic 45.0%
! CTCATGGAACAAAGGTACGA+GGG - chr2.3:71294042-71294061 MS.gene01789:intron 45.0%
! GCATAGTGCTGGAAATCAAC+AGG + chr2.3:71293500-71293519 None:intergenic 45.0%
! GGACTCCATTGTTTGGTGAT+AGG + chr2.3:71296257-71296276 None:intergenic 45.0%
! GTTGATTTCCAGCACTATGC+TGG - chr2.3:71293500-71293519 MS.gene01789:intron 45.0%
! TAGTACTGGAACTCTACCGT+CGG + chr2.3:71296201-71296220 None:intergenic 45.0%
! TAGTGCTGGAAATCAACAGG+AGG + chr2.3:71293497-71293516 None:intergenic 45.0%
! TCTCATGGAACAAAGGTACG+AGG - chr2.3:71294041-71294060 MS.gene01789:intron 45.0%
! TTAGTGGACACTGATGGCAA+GGG - chr2.3:71294001-71294020 MS.gene01789:intron 45.0%
! TTTAGTGGACACTGATGGCA+AGG - chr2.3:71294000-71294019 MS.gene01789:intron 45.0%
! TTTGTCTTCAGGCTTGGTCA+TGG + chr2.3:71293582-71293601 None:intergenic 45.0%
!!! TACTTTAATTTTTTTTTAAT+TGG - chr2.3:71293693-71293712 MS.gene01789:intron 5.0%
AAAGCCCTTCATGCCAGTGA+TGG - chr2.3:71295626-71295645 MS.gene01789:intron 50.0%
AAATCAACAGGAGGCTGTCC+AGG + chr2.3:71293488-71293507 None:intergenic 50.0%
ATAGCAGGAGAGAGCTATGC+AGG - chr2.3:71294491-71294510 MS.gene01789:CDS 50.0%
ATCTTTCCCCTAGAAACCGG+AGG + chr2.3:71296342-71296361 None:intergenic 50.0%
ATGGAGGTAAGGTCGTGCTT+TGG - chr2.3:71293621-71293640 MS.gene01789:intron 50.0%
CGTTAACCCTCCGGTTTCTA+GGG - chr2.3:71296332-71296351 MS.gene01789:intron 50.0%
GGATGCTCTTCTGTGGGATA+TGG - chr2.3:71293953-71293972 MS.gene01789:intron 50.0%
GGCATCTTTCCCCTAGAAAC+CGG + chr2.3:71296345-71296364 None:intergenic 50.0%
TCTTTCCCCTAGAAACCGGA+GGG + chr2.3:71296341-71296360 None:intergenic 50.0%
TTGTTCAGTGGAGACACCGA+CGG - chr2.3:71296182-71296201 MS.gene01789:intron 50.0%
! GAACAAAGGTACGAGGGTTG+AGG - chr2.3:71294048-71294067 MS.gene01789:intron 50.0%
! GTTAACCCTCCGGTTTCTAG+GGG - chr2.3:71296333-71296352 MS.gene01789:intron 50.0%
!! TATCCCACAGAAGAGCATCC+AGG + chr2.3:71293953-71293972 None:intergenic 50.0%
AGGACCTGGATGCTCTTCTG+TGG - chr2.3:71293946-71293965 MS.gene01789:intron 55.0%
GCGTTAACCCTCCGGTTTCT+AGG - chr2.3:71296331-71296350 MS.gene01789:intron 55.0%
GGACCTGGATGCTCTTCTGT+GGG - chr2.3:71293947-71293966 MS.gene01789:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 71293350 71296794 71293350 ID=MS.gene01789
chr2.3 mRNA 71293350 71296794 71293350 ID=MS.gene01789.t1;Parent=MS.gene01789
chr2.3 exon 71296518 71296794 71296518 ID=MS.gene01789.t1.exon1;Parent=MS.gene01789.t1
chr2.3 CDS 71296518 71296794 71296518 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71296089 71296196 71296089 ID=MS.gene01789.t1.exon2;Parent=MS.gene01789.t1
chr2.3 CDS 71296089 71296196 71296089 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71295833 71295928 71295833 ID=MS.gene01789.t1.exon3;Parent=MS.gene01789.t1
chr2.3 CDS 71295833 71295928 71295833 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71295632 71295724 71295632 ID=MS.gene01789.t1.exon4;Parent=MS.gene01789.t1
chr2.3 CDS 71295632 71295724 71295632 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71295445 71295527 71295445 ID=MS.gene01789.t1.exon5;Parent=MS.gene01789.t1
chr2.3 CDS 71295445 71295527 71295445 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71295036 71295323 71295036 ID=MS.gene01789.t1.exon6;Parent=MS.gene01789.t1
chr2.3 CDS 71295036 71295323 71295036 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71294466 71294596 71294466 ID=MS.gene01789.t1.exon7;Parent=MS.gene01789.t1
chr2.3 CDS 71294466 71294596 71294466 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71294241 71294336 71294241 ID=MS.gene01789.t1.exon8;Parent=MS.gene01789.t1
chr2.3 CDS 71294241 71294336 71294241 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71293849 71293954 71293849 ID=MS.gene01789.t1.exon9;Parent=MS.gene01789.t1
chr2.3 CDS 71293849 71293954 71293849 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
chr2.3 exon 71293350 71293496 71293350 ID=MS.gene01789.t1.exon10;Parent=MS.gene01789.t1
chr2.3 CDS 71293350 71293496 71293350 ID=cds.MS.gene01789.t1;Parent=MS.gene01789.t1
Gene Sequence

>MS.gene01789

ATGACAAGTTTCTACACATTGGCTTTGATAGTGTTGTTTTTACATGTGAATCCTATTGTTTCTTTTAAAGATAGGAAATGGGGTGGTGGGAGAAAATTAAGCTATGATGATAATAATGATCTTGTGACTAACTTACCTGGACAGCCTCCTGTTGATTTCCAGCACTATGCTGGATATGTCACAGTTAATGAAACCAATGGAAGAGCATTGTTTTACTGGTTTTTTGAGGCCATGACCAAGCCTGAAGACAAACCATTGGTTTTATGGCTTAATGGAGGTAAGGTCGTGCTTTGGTGTAAAAGTAAATGACAAATTTGTGAACAAAAGTTTATTGAACTCATTTTACTTTAATTTTTTTTTAATTGGTGGGGAAGAGTGTGATGTTACTTTTGTATGTTTTCAACCTATTTGAGAAATGTTAAAATAGCGAATTCGGCTCTAAAGAAGACAGATAAATAAACACATAAGAATACAACAAAATGATCACAAAGTTCGGTCAATTGTGCTAACGTCTCGGAAAACTAGCAGGTCCTGTATGATACACATAATAAAATATATTATTTGTCTAGGTGACAATGTTTTTTTTTGTTATTTACAGGACCTGGATGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACTGATGGCAAGGGTCTCAAATTTAATAACTTCTCATGGAACAAAGGTACGAGGGTTGAGGACCACAAACATAACATATATTAGTATACTTTGTGGCACAATCCACCTCACTGTTTTTTATGGAAATGTAAAAAAATTTCCCTACATAGAATTGTTAATTGATGCCAAGTATGTTTTATATATATGTGAAATGTAATATCATGCAGAAGCAAACATGTTATTCTTGGAATCTCCTGTTGGAGTTGGATTTTCTTACTCAAATACAACCAGTGAATATGCACAACTAGGAGATGACTTCACAGGTTTTTACTTCATCTAAATATCTTTGTTTTTTGCATAATGGTCATCAAATGCTACAAAATAACTCGATAATTAATTTTAATTGTGCTCTATTGACTGATTTGAAACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTTCTCAAGTATCCATCATATAGAACAAGAGCATTTTACATAGCAGGAGAGAGCTATGCAGGTATTGAAATCAAAATCATTGTGTCTGAGTATCGAGTTCGATTCTTAACGATAAAAAAACGTCATTTTTAGTCCCATGAATTGATCATAAAACATGTTTTGCAGGAAAGTATGTACCAGAGCTTGCTGAACTCATCATTGATAGAAACAATAACCCTTCCCTTCATATTGATCTAAAGGGCATTTTGGTATGTTCCTACAAGATTTAAAATCTAGCTTAAAGTTCTAGATAAATATCCAAGTATAAAGAATCTTATTTTAGTATAAATATGAATGAGCACAAAATAATGCTTTTATTTTTTTGGGCAGCTGGGAAACCCTGAAACTTCTTATAATGAAGATTGGTTAGGAATGGTTGATTATGCTTGGAGTCATGCAGTGATATCTGATGAAACCTATAAAAAAATTAGAAGAAGTTGTGACTTTAACAGTAGTGATCCATGGAAAAATGAAGAATGTACTCATGGTGTGGATGAAGTGCTTAAACAATACAATGAAATTGATATCTACAGCCTGTATACCTCTGTCTGCTTTGCTAGTACAGCGCGATCGAACGATCAATCCATGAAAATGGTGATGAAGCACTCATCTCTAATGGTGAGTGATCAATATTAGAGGAAGTGGTGTGTTGAAACTGAGAAACTTTAACAATGAATTTTTATCCGTCGAGGTGTTAAGGCTGTTTTAATGTTACTTTTTGCCCAAGCAAACTTATAAACAATTTGTTATAAATTGTTTAATGAAAAAAGTTGTAAATATTTTCATCAAGAGGAAAACAAATGCTTGAAATTTCACCGCGTGTGTCATTTGAAAAAAACCTTTCTTACAATAGACCGATAGATTGAAAATTATTAAATCAAATTAGAAATGTGAAATTCCATCATGCGAGAAGACTTTTTCGATTGAAGAGACAAAAGATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGCGCGTGTATATGTTTTGAATTCTGTTTATAAATTGATTTGACTCTTCTTTGTGGATTTGGTTGACTAGATACCAAGGATCATGGGTGGTTATGATCCATGTTTGGATGACTATGCTAAAGCTTTTTACAACAAACCAGATGTTCAGAAAGCCCTTCATGCCAGTGATGGTCATAATCTAAGGAATTGGAGTATTTGCAAGTATATATTGTCCTATTTTTCACTTTTTTTGTACTAATATCTACATAAATTTGATTAATTTAATTTAATTTTTTATGAATTTGATTACCCTTAATCTAAATTGACATTTTATCTGTTAATTAAAACCAGCAACGACATATTTACTGGATGGAAACAAACAAAACACTCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCTGGACTTAGGATTTGGCTTTACAGGTAACCAATTATATATGTGCGCGTGGCGCACTCATCTTAAATTTCTGAATTTTCATCTTCAAAAACAAATTAGTATTGTTAATAAAGAGGATATTTAAAATATAATAATAAATTTATCTAGTAATTTAAAACGAGACTATATACGGTAACAATTTTGTTTCTAAAGGAACATAAACTAAGTGACAAAGCTAATAGTATTGTTCAATTTGAACTTTTTCTATAGATTTAAGTACCTTATAAACCATATTTTTTCATGATTTTTATTTCTTCATACTTGATTGTTCAGTGGAGACACCGACGGTAGAGTTCCAGTACTATCAACCAGATACAGCTTAAGCATTCTTGACTTGCCTATCACCAAACAATGGAGTCCTTGGTACCATGAAAAGGAGGTACGAAAATCATGAATTCATTTTTTTTTTTATTGGCGTTAACCCTCCGGTTTCTAGGGGAAAGATGCCCTATTAATCCGAAGTTTGACCGTGATGTATGGATAGCTTGATCAAGAATTGTTCCATTCAGGAATCATATTCGGGTTCTCTCGAATAATTCGTCCTTGATGGAGCTAATTTACCACTTGAACTCAATTGATTGATTAAATTCATTTTTTATTTATAATAAATCATGAATTAAAAAAAATCATGAATTTACATTAAAAAAATCATATTCCTAAGTATGCCACATAAATGATGCATTTGCTATCAAGATTCATTTTTAAAAATAATTTGTTTTGTGTTGGAATAGGTAAGTGGATGGTATCAAGAATATGAAGGACTTACATTTGCTACATTTAGAGGAGCTGGTCATGCAGTGCCCTGTTTTAAACCAAGCAATTCACTTGCATTCTTCACCACCTTTCTTCTTGGAGAATCACCACCTTCAACTAGATAA
Protein sequence

>MS.gene01789.t1

MTSFYTLALIVLFLHVNPIVSFKDRKWGGGRKLSYDDNNDLVTNLPGQPPVDFQHYAGYVTVNETNGRALFYWFFEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKYPSYRTRAFYIAGESYAGKYVPELAELIIDRNNNPSLHIDLKGILLGNPETSYNEDWLGMVDYAWSHAVISDETYKKIRRSCDFNSSDPWKNEECTHGVDEVLKQYNEIDIYSLYTSVCFASTARSNDQSMKMVMKHSSLMIPRIMGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLRNWSICNNDIFTGWKQTKHSVIPIYKKLISAGLRIWLYSGDTDGRVPVLSTRYSLSILDLPITKQWSPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFTTFLLGESPPSTR