AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047539

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047539.t1 MTR_2g012850 96.414 474 11 1 1 474 1 468 0.0 946
MS.gene047539.t1 MTR_4g089155 84.279 458 68 3 21 474 31 488 0.0 802
MS.gene047539.t1 MTR_2g012860 77.197 478 103 3 1 474 1 476 0.0 769
MS.gene047539.t1 MTR_4g122950 51.461 445 203 6 40 473 37 479 1.38e-164 474
MS.gene047539.t1 MTR_4g122960 49.887 443 211 6 40 473 37 477 1.07e-159 461
MS.gene047539.t1 MTR_4g075150 50.909 440 203 6 39 472 32 464 1.68e-159 460
MS.gene047539.t1 MTR_4g075150 50.913 438 204 5 39 472 32 462 5.21e-159 459
MS.gene047539.t1 MTR_7g013790 47.489 438 227 2 37 473 31 466 4.28e-146 426
MS.gene047539.t1 MTR_1g095560 47.273 440 214 7 40 473 31 458 1.17e-139 409
MS.gene047539.t1 MTR_3g079570 47.260 438 205 7 40 473 77 492 1.79e-136 402
MS.gene047539.t1 MTR_3g079600 47.727 440 204 7 40 473 74 493 6.28e-136 401
MS.gene047539.t1 MTR_3g034290 45.538 437 220 5 40 474 73 493 3.29e-133 394
MS.gene047539.t1 MTR_2g062990 44.191 439 232 6 37 472 35 463 3.40e-133 393
MS.gene047539.t1 MTR_1g095540 45.682 440 221 7 40 473 31 458 3.56e-133 392
MS.gene047539.t1 MTR_1g095560 44.492 472 212 9 40 473 31 490 3.97e-133 394
MS.gene047539.t1 MTR_3g079560 46.347 438 210 8 40 473 76 492 8.27e-133 393
MS.gene047539.t1 MTR_1g021010 46.682 437 206 8 42 474 76 489 1.01e-132 392
MS.gene047539.t1 MTR_2g063000 43.864 440 230 9 39 472 36 464 5.45e-131 387
MS.gene047539.t1 MTR_3g079590 46.083 434 211 7 40 470 76 489 6.40e-131 388
MS.gene047539.t1 MTR_3g079620 45.291 446 211 8 40 473 76 500 9.69e-131 388
MS.gene047539.t1 MTR_2g081620 43.722 446 233 8 37 474 36 471 1.61e-130 386
MS.gene047539.t1 MTR_0003s0560 46.560 436 215 6 40 474 72 490 3.83e-130 386
MS.gene047539.t1 MTR_1g020090 46.014 439 203 9 39 471 87 497 9.21e-129 383
MS.gene047539.t1 MTR_2g062980 44.191 439 232 7 37 472 35 463 2.97e-128 380
MS.gene047539.t1 MTR_1g021020 43.966 464 222 8 14 474 62 490 1.83e-125 374
MS.gene047539.t1 MTR_3g079630 44.295 447 214 8 40 473 76 500 4.00e-122 366
MS.gene047539.t1 MTR_5g072570 40.890 472 254 7 13 473 6 463 1.30e-117 353
MS.gene047539.t1 MTR_3g090130 41.892 444 238 7 39 473 26 458 1.27e-116 350
MS.gene047539.t1 MTR_3g090150 40.674 445 244 6 39 473 31 465 1.97e-115 348
MS.gene047539.t1 MTR_2g063000 40.868 438 215 10 39 472 36 433 5.85e-114 343
MS.gene047539.t1 MTR_7g021130 40.724 442 235 9 42 471 31 457 2.68e-106 324
MS.gene047539.t1 MTR_2g449850 39.956 458 245 10 28 473 25 464 3.92e-106 323
MS.gene047539.t1 MTR_8g099930 39.509 448 242 10 40 473 32 464 8.60e-104 318
MS.gene047539.t1 MTR_3g434850 39.238 446 239 9 40 472 29 455 1.45e-103 317
MS.gene047539.t1 MTR_3g498755 40.222 450 238 11 40 473 13 447 1.84e-103 316
MS.gene047539.t1 MTR_1g040370 39.130 437 211 7 40 471 29 415 1.75e-102 313
MS.gene047539.t1 MTR_3g034290 44.886 352 177 4 40 390 73 408 1.97e-102 312
MS.gene047539.t1 MTR_0003s0560 51.969 254 120 2 40 293 72 323 3.95e-84 263
MS.gene047539.t1 MTR_8g011350 34.183 471 258 15 41 467 30 492 5.71e-74 241
MS.gene047539.t1 MTR_7g051430 32.617 512 272 16 4 467 6 492 3.77e-73 239
MS.gene047539.t1 MTR_1g102130 33.259 451 244 12 36 474 86 491 8.82e-71 233
MS.gene047539.t1 MTR_7g080180 32.495 477 268 15 41 469 27 497 9.61e-69 228
MS.gene047539.t1 MTR_8g011350 33.110 447 247 15 41 443 30 468 2.06e-63 213
MS.gene047539.t1 MTR_4g021520 32.805 442 263 16 42 465 40 465 2.86e-62 210
MS.gene047539.t1 MTR_2g018630 32.118 439 270 16 41 465 36 460 1.45e-57 197
MS.gene047539.t1 MTR_4g021510 32.200 441 261 16 42 462 39 461 6.60e-57 196
MS.gene047539.t1 MTR_3g100420 31.111 450 276 15 40 465 52 491 1.20e-56 196
MS.gene047539.t1 MTR_4g021535 32.127 442 266 17 42 465 36 461 1.39e-56 195
MS.gene047539.t1 MTR_7g051430 32.258 434 222 15 4 390 6 414 1.59e-56 193
MS.gene047539.t1 MTR_7g080180 31.166 446 250 15 41 439 27 462 2.68e-56 194
MS.gene047539.t1 MTR_4g021530 31.674 442 268 16 42 465 40 465 1.43e-55 192
MS.gene047539.t1 MTR_4g021490 31.696 448 260 18 42 465 40 465 1.57e-55 192
MS.gene047539.t1 MTR_4g021520 32.840 405 239 15 42 429 40 428 7.06e-54 186
MS.gene047539.t1 MTR_4g021500 32.135 445 264 17 42 466 40 466 2.58e-53 192
MS.gene047539.t1 MTR_4g021500 29.070 430 264 15 48 465 482 882 8.87e-47 174
MS.gene047539.t1 MTR_4g021500 32.135 445 264 17 42 466 40 466 3.63e-53 192
MS.gene047539.t1 MTR_4g021500 29.817 436 271 15 48 465 482 900 1.06e-49 182
MS.gene047539.t1 MTR_2g018590 29.530 447 279 15 41 465 32 464 4.95e-53 185
MS.gene047539.t1 MTR_2g018600 29.530 447 278 16 41 465 33 464 9.56e-52 182
MS.gene047539.t1 MTR_5g021570 83.654 104 5 1 193 296 270 361 8.04e-51 177
MS.gene047539.t1 MTR_3g045770 29.302 430 271 15 41 454 26 438 3.64e-49 174
MS.gene047539.t1 MTR_4g057570 27.079 469 260 15 31 468 73 490 3.62e-43 159
MS.gene047539.t1 MTR_2g009200 29.195 435 249 16 35 448 21 417 1.02e-42 157
MS.gene047539.t1 MTR_4g021535 28.864 440 236 16 42 465 36 414 1.25e-41 153
MS.gene047539.t1 MTR_1g094155 28.904 429 263 12 52 467 87 486 2.26e-41 154
MS.gene047539.t1 MTR_4g057585 26.897 435 275 13 47 467 87 492 7.32e-41 153
MS.gene047539.t1 MTR_0075s0010 29.333 375 182 12 39 404 5 305 2.30e-40 147
MS.gene047539.t1 MTR_1g050545 27.610 431 265 12 53 467 81 480 1.21e-39 149
MS.gene047539.t1 MTR_4g057595 26.340 429 274 12 52 467 94 493 4.00e-39 148
MS.gene047539.t1 MTR_2g018630 30.659 349 221 13 125 465 20 355 5.23e-39 145
MS.gene047539.t1 MTR_2g095750 26.977 430 283 12 47 468 92 498 1.99e-38 146
MS.gene047539.t1 MTR_2g095730 26.047 430 280 13 52 468 91 495 6.28e-38 145
MS.gene047539.t1 MTR_4g057600 25.400 437 264 12 55 468 95 492 2.98e-35 137
MS.gene047539.t1 MTR_5g097180 27.103 428 257 15 57 466 43 433 3.59e-33 131
MS.gene047539.t1 MTR_4g084710 26.402 428 260 15 57 466 45 435 1.92e-31 126
MS.gene047539.t1 MTR_2g095710 24.416 471 284 17 17 468 64 481 1.66e-26 112
MS.gene047539.t1 MTR_4g056520 24.169 451 278 18 58 472 36 458 1.94e-22 100
MS.gene047539.t1 MTR_1g051175 51.087 92 42 2 49 139 20 109 2.36e-19 88.6
MS.gene047539.t1 MTR_2g084530 25.517 435 264 16 58 458 36 444 1.55e-15 79.0
MS.gene047539.t1 MTR_7g100560 23.962 313 156 9 48 350 65 305 1.70e-14 74.7
MS.gene047539.t1 MTR_4g122970 56.000 50 21 1 40 88 38 87 2.10e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047539.t1 AT1G11080 66.527 478 151 3 6 474 15 492 0.0 662
MS.gene047539.t1 AT1G11080 66.527 478 151 3 6 474 15 492 0.0 662
MS.gene047539.t1 AT1G61130 67.955 440 130 3 40 474 30 463 0.0 632
MS.gene047539.t1 AT4G15100 65.632 451 148 2 31 474 34 484 0.0 609
MS.gene047539.t1 AT5G08260 50.773 453 209 6 30 474 33 479 5.43e-159 459
MS.gene047539.t1 AT4G30610 48.284 437 220 5 40 473 31 464 2.06e-152 442
MS.gene047539.t1 AT5G23210 48.222 450 213 6 40 472 50 496 9.10e-150 436
MS.gene047539.t1 AT3G17180 48.559 451 213 9 36 473 33 477 2.02e-148 432
MS.gene047539.t1 AT2G24000 48.394 436 212 8 39 467 28 457 7.82e-148 430
MS.gene047539.t1 AT2G24010 46.697 439 221 4 37 473 26 453 1.30e-146 427
MS.gene047539.t1 AT2G24010 44.934 454 222 5 37 473 26 468 2.19e-141 414
MS.gene047539.t1 AT3G02110 43.949 471 253 4 7 471 6 471 3.35e-140 411
MS.gene047539.t1 AT2G35780 47.086 429 213 6 40 465 28 445 6.90e-139 407
MS.gene047539.t1 AT3G07990 46.364 440 218 7 40 473 32 459 4.03e-136 400
MS.gene047539.t1 AT2G24010 43.158 475 217 6 41 473 1 464 7.08e-135 397
MS.gene047539.t1 AT3G63470 45.872 436 218 5 40 473 80 499 1.44e-134 398
MS.gene047539.t1 AT4G30810 45.890 438 227 6 39 474 35 464 1.88e-134 397
MS.gene047539.t1 AT5G23210 48.030 406 191 6 40 428 50 452 4.15e-133 392
MS.gene047539.t1 AT3G17180 48.020 404 192 8 36 427 33 430 9.56e-132 388
MS.gene047539.t1 AT2G35770 43.187 477 240 11 4 473 8 460 9.81e-129 381
MS.gene047539.t1 AT5G23210 44.554 404 204 6 86 472 1 401 1.62e-118 353
MS.gene047539.t1 AT5G23210 44.697 396 199 6 94 472 8 400 4.41e-117 350
MS.gene047539.t1 AT3G52020 42.141 439 233 10 40 473 78 500 6.83e-114 345
MS.gene047539.t1 AT2G12480 41.761 443 236 10 39 472 29 458 3.72e-113 342
MS.gene047539.t1 AT2G05850 38.914 442 245 8 40 473 62 486 1.22e-109 333
MS.gene047539.t1 AT3G52000 41.043 441 236 10 38 473 60 481 1.27e-109 333
MS.gene047539.t1 AT5G42240 40.449 445 245 7 39 472 30 465 1.98e-109 332
MS.gene047539.t1 AT1G43780 40.268 447 242 9 39 471 35 470 2.00e-109 333
MS.gene047539.t1 AT2G33530 42.377 446 228 10 40 471 32 462 3.27e-109 332
MS.gene047539.t1 AT1G28110 42.152 446 231 10 38 471 28 458 2.22e-108 329
MS.gene047539.t1 AT1G28110 42.152 446 231 10 38 471 28 458 2.22e-108 329
MS.gene047539.t1 AT2G12480 39.593 442 223 8 39 472 29 434 6.07e-105 320
MS.gene047539.t1 AT3G52010 38.803 451 250 10 31 473 54 486 6.91e-105 321
MS.gene047539.t1 AT5G42230 39.101 445 249 8 40 472 27 461 3.68e-104 319
MS.gene047539.t1 AT5G42230 39.101 445 249 8 40 472 27 461 3.68e-104 319
MS.gene047539.t1 AT2G24010 42.779 367 182 5 41 390 1 356 2.63e-103 313
MS.gene047539.t1 AT2G12480 39.140 442 223 8 39 472 29 432 4.37e-103 315
MS.gene047539.t1 AT2G12480 39.278 443 222 9 39 472 29 433 2.10e-101 311
MS.gene047539.t1 AT5G23210 44.034 352 177 6 94 428 8 356 2.47e-100 305
MS.gene047539.t1 AT2G24000 38.568 433 196 12 39 467 28 394 4.53e-98 301
MS.gene047539.t1 AT4G12910 34.261 467 261 13 41 467 34 494 6.03e-77 249
MS.gene047539.t1 AT3G25420 33.689 469 265 13 41 468 29 492 8.10e-77 249
MS.gene047539.t1 AT4G12910 32.944 428 242 12 41 429 34 455 2.89e-64 215
MS.gene047539.t1 AT3G56540 61.538 156 59 1 40 195 78 232 5.48e-60 197
MS.gene047539.t1 AT1G33540 31.333 450 280 16 37 468 24 462 1.12e-58 200
MS.gene047539.t1 AT2G22920 30.248 443 267 13 37 467 20 432 1.13e-57 197
MS.gene047539.t1 AT2G22990 30.856 444 265 14 37 468 18 431 3.95e-57 195
MS.gene047539.t1 AT1G33540 31.616 427 264 15 59 468 4 419 1.32e-56 194
MS.gene047539.t1 AT3G12203 30.474 443 265 14 37 468 4 414 1.34e-56 193
MS.gene047539.t1 AT3G12203 30.474 443 265 14 37 468 25 435 2.47e-56 193
MS.gene047539.t1 AT1G73300 30.717 446 261 14 37 468 28 439 2.68e-56 193
MS.gene047539.t1 AT1G73300 30.717 446 261 14 37 468 28 439 2.68e-56 193
MS.gene047539.t1 AT1G73270 30.787 445 264 15 37 469 28 440 6.92e-56 192
MS.gene047539.t1 AT1G73280 30.682 440 261 14 41 468 32 439 7.07e-56 192
MS.gene047539.t1 AT1G73270 30.787 445 264 15 37 469 28 440 1.07e-55 192
MS.gene047539.t1 AT1G73290 31.136 440 265 13 37 468 27 436 5.16e-55 190
MS.gene047539.t1 AT3G10450 31.306 444 261 15 37 468 24 435 2.52e-54 188
MS.gene047539.t1 AT2G22970 30.889 450 247 16 41 468 24 431 1.58e-53 186
MS.gene047539.t1 AT2G23010 29.325 474 284 14 7 468 1 435 6.22e-53 184
MS.gene047539.t1 AT2G22990 31.190 420 248 13 37 444 18 408 8.19e-53 183
MS.gene047539.t1 AT2G22990 31.116 421 249 13 37 445 18 409 8.23e-53 184
MS.gene047539.t1 AT3G12220 31.264 451 256 19 35 468 20 433 1.60e-52 183
MS.gene047539.t1 AT5G36180 30.444 450 257 16 37 468 28 439 1.92e-52 183
MS.gene047539.t1 AT1G73310 31.011 445 261 15 37 468 28 439 2.46e-52 183
MS.gene047539.t1 AT2G23010 29.114 474 285 14 7 468 1 435 2.90e-52 182
MS.gene047539.t1 AT2G23000 28.924 446 281 13 33 468 16 435 6.93e-52 181
MS.gene047539.t1 AT2G23000 28.924 446 281 13 33 468 16 435 6.93e-52 181
MS.gene047539.t1 AT2G22980 30.963 436 255 13 41 465 25 425 1.68e-51 180
MS.gene047539.t1 AT2G22990 30.856 444 256 16 37 468 18 422 1.68e-51 180
MS.gene047539.t1 AT5G09640 29.867 452 287 15 37 468 22 463 2.44e-51 181
MS.gene047539.t1 AT3G12203 30.318 409 243 13 70 468 1 377 4.24e-51 178
MS.gene047539.t1 AT3G12230 29.148 446 272 16 35 468 20 433 5.29e-51 179
MS.gene047539.t1 AT2G22920 30.123 405 243 11 37 430 20 395 7.78e-51 178
MS.gene047539.t1 AT3G10450 31.116 421 247 14 59 468 4 392 1.70e-50 177
MS.gene047539.t1 AT3G12240 29.621 449 270 20 33 468 19 434 3.99e-50 177
MS.gene047539.t1 AT2G22970 30.841 428 233 15 41 446 24 410 5.52e-50 177
MS.gene047539.t1 AT2G22970 30.679 427 233 15 41 445 24 409 1.34e-49 175
MS.gene047539.t1 AT3G10450 30.879 421 248 14 37 445 24 413 7.57e-49 173
MS.gene047539.t1 AT1G73290 30.923 401 241 11 37 430 27 398 1.50e-48 172
MS.gene047539.t1 AT3G12220 31.455 426 239 18 59 468 15 403 1.64e-48 172
MS.gene047539.t1 AT2G22980 30.843 415 244 11 41 445 25 406 4.85e-48 171
MS.gene047539.t1 AT2G22980 31.084 415 241 12 41 444 25 405 1.08e-47 170
MS.gene047539.t1 AT1G73310 30.732 410 240 13 37 434 28 405 1.20e-46 167
MS.gene047539.t1 AT3G10450 30.653 398 234 13 59 445 4 370 3.99e-45 162
MS.gene047539.t1 AT3G45010 28.833 437 280 12 47 474 92 506 5.78e-45 164
MS.gene047539.t1 AT1G73290 34.701 268 165 6 37 297 27 291 3.61e-43 155
MS.gene047539.t1 AT5G22980 29.439 428 263 15 52 468 95 494 1.56e-41 155
MS.gene047539.t1 AT2G22920 34.701 268 159 8 37 293 20 282 3.63e-41 149
MS.gene047539.t1 AT1G73280 33.955 268 161 8 41 297 32 294 7.52e-41 150
MS.gene047539.t1 AT3G10410 28.935 432 265 16 47 465 90 492 3.81e-40 151
MS.gene047539.t1 AT2G22970 35.448 268 148 10 41 293 24 281 1.50e-38 142
MS.gene047539.t1 AT1G73280 29.345 351 211 11 124 468 18 337 9.70e-38 141
MS.gene047539.t1 AT2G22990 29.565 345 208 11 130 468 2 317 9.40e-37 138
MS.gene047539.t1 AT2G22980 37.445 227 128 6 41 259 25 245 2.38e-36 137
MS.gene047539.t1 AT2G22990 29.565 345 208 11 130 468 2 317 3.79e-36 136
MS.gene047539.t1 AT1G73280 29.155 343 206 11 132 468 1 312 3.97e-35 133
MS.gene047539.t1 AT3G12220 34.252 254 148 8 35 278 20 264 4.00e-35 135
MS.gene047539.t1 AT5G36180 29.412 357 203 13 124 468 18 337 7.79e-35 133
MS.gene047539.t1 AT5G36180 29.412 357 203 13 124 468 18 337 7.79e-35 133
MS.gene047539.t1 AT5G36180 29.341 334 188 12 124 445 18 315 2.57e-31 123
MS.gene047539.t1 AT1G15000 27.002 437 267 13 48 468 24 424 5.30e-31 124
MS.gene047539.t1 AT1G73310 29.653 317 186 10 124 434 18 303 5.94e-29 116
MS.gene047539.t1 AT5G36180 29.338 317 177 11 124 429 18 298 1.46e-28 115
MS.gene047539.t1 AT2G22980 29.283 321 189 9 130 445 2 289 1.79e-28 114
MS.gene047539.t1 AT5G22960 33.721 172 90 6 47 216 25 174 3.54e-23 97.1
MS.gene047539.t1 AT2G22920 27.027 259 160 7 213 468 22 254 8.43e-23 97.8
MS.gene047539.t1 AT2G27920 25.342 438 269 15 58 460 37 451 1.74e-22 100
MS.gene047539.t1 AT2G27920 24.433 397 248 13 95 460 4 379 2.17e-15 78.2
MS.gene047539.t1 AT2G22960 31.655 139 90 4 331 468 48 182 2.47e-13 68.9

Find 105 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATAAGCTTCTTGTAAAT+TGG 0.119064 2.1:+71735747 None:intergenic
TTCTTCACTACCTTTCTTCT+TGG 0.193935 2.1:-71735030 MS.gene047539:CDS
TATTGATCTCAAGGGCATTT+TGG 0.225051 2.1:-71737243 MS.gene047539:intron
TCTTCAGCATAAGAAGTTTC+AGG 0.238833 2.1:+71737103 None:intergenic
AAAACCAATGGTTTGTCTTC+AGG 0.250102 2.1:+71738330 None:intergenic
CTTACATTTGCTACATTTAG+AGG 0.270221 2.1:-71735099 MS.gene047539:CDS
GGATGCTCTTCTGTGGGATA+TGG 0.281309 2.1:-71737968 MS.gene047539:CDS
AAACGATCAATCCATGAAAA+TGG 0.296837 2.1:-71736870 MS.gene047539:CDS
TTTCAGCTGGACTTAGGATT+TGG 0.302156 2.1:-71735728 MS.gene047539:CDS
AGAAGCAAACATGTTATTCT+TGG 0.302955 2.1:-71737707 MS.gene047539:CDS
GCTCTCTCCTGCTATGTAAA+AGG 0.304729 2.1:+71737440 None:intergenic
TGAATTGCTTGGTTTAAAAC+AGG 0.317078 2.1:+71735059 None:intergenic
GATGAAGCACTCATCTTTAA+TGG 0.328835 2.1:-71736846 MS.gene047539:intron
TTTCTTATAGAGATAGGAAA+TGG 0.338230 2.1:-71738512 MS.gene047539:CDS
CTATTGTTTCTTATAGAGAT+AGG 0.343684 2.1:-71738518 MS.gene047539:CDS
AAATAAGCTTCTTGTAAATT+GGG 0.354062 2.1:+71735748 None:intergenic
CAATGGTTTGTCTTCAGGTT+TGG 0.365874 2.1:+71738335 None:intergenic
AACAGCAACGACATATTTAC+TGG 0.366911 2.1:-71735798 MS.gene047539:intron
TGAAGGGCTTTCTGAACATC+TGG 0.387787 2.1:+71735981 None:intergenic
ATGGTCATAATCTAAGGAAT+TGG 0.392950 2.1:-71735950 MS.gene047539:CDS
AAGAATGCTTAAGCTGTATC+TGG 0.392967 2.1:+71735376 None:intergenic
CTATCTCTATAAGAAACAAT+AGG 0.397172 2.1:+71738519 None:intergenic
AAACTTCTTATGCTGAAGAT+TGG 0.402460 2.1:-71737099 MS.gene047539:CDS
CCAGTGATGGTCATAATCTA+AGG 0.405053 2.1:-71735956 MS.gene047539:CDS
TTGGAATCTCCTGTTGGAGT+TGG 0.412688 2.1:-71737688 MS.gene047539:CDS
TACAAGAAGCTTATTTCAGC+TGG 0.422358 2.1:-71735741 MS.gene047539:CDS
TTCTTATAGAGATAGGAAAT+GGG 0.423943 2.1:-71738511 MS.gene047539:CDS
TCTTATGCTGAAGATTGGTT+AGG 0.429293 2.1:-71737094 MS.gene047539:CDS
GACTTAGGATTTGGCTCTAC+AGG 0.430036 2.1:-71735719 MS.gene047539:intron
GTTGATTTCCAGCACTATGC+TGG 0.441264 2.1:-71738420 MS.gene047539:CDS
TAAGAAAATCCAACTCCAAC+AGG 0.446307 2.1:+71737679 None:intergenic
TGTTAAAGTCACAGCTTCTT+CGG 0.448902 2.1:+71737014 None:intergenic
GGACTCCATTGCTTGGTGAT+AGG 0.448946 2.1:+71735347 None:intergenic
CTGTATCTGGTTGATAGAAC+TGG 0.450470 2.1:+71735389 None:intergenic
CAAAGCAGACAGACGTATAG+AGG 0.450749 2.1:+71736909 None:intergenic
TTTGCTACATTTAGAGGAGC+TGG 0.454132 2.1:-71735093 MS.gene047539:CDS
AGCTTATTTCAGCTGGACTT+AGG 0.455901 2.1:-71735734 MS.gene047539:CDS
TCAAATTTAATAACTTCTCA+TGG 0.458488 2.1:-71737895 MS.gene047539:CDS
TCCTAGTTGTGCATATTCAC+TGG 0.461066 2.1:+71737645 None:intergenic
CTTCAGCATAAGAAGTTTCA+GGG 0.461101 2.1:+71737104 None:intergenic
GCATAGTGCTGGAAATCAAC+AGG 0.461642 2.1:+71738423 None:intergenic
GTAAAACAATGCTCTTCCAT+TGG 0.467790 2.1:+71738377 None:intergenic
GGGTGGTTATGATCCATGTT+TGG 0.468140 2.1:-71736033 MS.gene047539:CDS
TTATTCTTGGAATCTCCTGT+TGG 0.472255 2.1:-71737694 MS.gene047539:CDS
TGCCCTTGAGATCAATATGA+AGG 0.472647 2.1:+71737249 None:intergenic
TTTGTCTTCAGGTTTGGTCA+TGG 0.472740 2.1:+71738341 None:intergenic
TAGGAATGGTTGATTATGCT+TGG 0.473229 2.1:-71737075 MS.gene047539:CDS
TTCCCTTCATATTGATCTCA+AGG 0.480182 2.1:-71737252 MS.gene047539:CDS
TCACCAAGCAATGGAGTCCT+TGG 0.483793 2.1:-71735343 MS.gene047539:CDS
GAGATAGGAAATGGGGTGGT+GGG 0.484433 2.1:-71738503 MS.gene047539:CDS
TGACTAGATACCAAGGATCA+TGG 0.486990 2.1:-71736054 MS.gene047539:intron
AGAGATAGGAAATGGGGTGG+TGG 0.491660 2.1:-71738504 MS.gene047539:CDS
CCTTAGATTATGACCATCAC+TGG 0.496669 2.1:+71735956 None:intergenic
ATAGCAGGAGAGAGCTATGC+AGG 0.504990 2.1:-71737432 MS.gene047539:intron
GAGTCCTTGGTATCATGAAA+AGG 0.505154 2.1:-71735330 MS.gene047539:CDS
TCATAACCACCCATGATCCT+TGG 0.512919 2.1:+71736044 None:intergenic
TGACATATCCAGCATAGTGC+TGG 0.515412 2.1:+71738412 None:intergenic
AAGGCTCTTGTTCTGTATGA+AGG 0.515952 2.1:+71737459 None:intergenic
AGGTCCTGGATGCTCTTCTG+TGG 0.521462 2.1:-71737975 MS.gene047539:CDS
AAATCAACAGGAGGTTGGCC+AGG 0.532125 2.1:+71738435 None:intergenic
GACTAGATACCAAGGATCAT+GGG 0.534210 2.1:-71736053 MS.gene047539:intron
TATGGAGCAACACAAGAGAT+TGG 0.535698 2.1:-71737950 MS.gene047539:CDS
TATCCCACAGAAGAGCATCC+AGG 0.537264 2.1:+71737971 None:intergenic
ATGACCATCACTGGCATGAA+GGG 0.542541 2.1:+71735965 None:intergenic
TATGACCATCACTGGCATGA+AGG 0.546655 2.1:+71735964 None:intergenic
TGGTGATTCTCCAAGAAGAA+AGG 0.547447 2.1:+71735020 None:intergenic
TTTAGTGGACACTGATGGCA+AGG 0.549717 2.1:-71737921 MS.gene047539:CDS
TGCTGAAGATTGGTTAGGAA+TGG 0.552543 2.1:-71737089 MS.gene047539:CDS
ATGATGAGTTCAGCAAGCTC+TGG 0.554264 2.1:+71737293 None:intergenic
CAACTAGGAGATGACTTCAC+AGG 0.559301 2.1:-71737631 MS.gene047539:intron
TATGACAAGTTTCTACACAT+TGG 0.560723 2.1:-71738571 MS.gene047539:CDS
GGTCCTGGATGCTCTTCTGT+GGG 0.563548 2.1:-71737974 MS.gene047539:CDS
TTTGTGTTGGAATAGGTAAG+TGG 0.569912 2.1:-71735144 MS.gene047539:intron
ATACCAAGGACTCCATTGCT+TGG 0.578774 2.1:+71735340 None:intergenic
GCCCTTGAGATCAATATGAA+GGG 0.580105 2.1:+71737250 None:intergenic
TTGAGATCAATATGAAGGGA+AGG 0.580444 2.1:+71737254 None:intergenic
CCATTAAGCCATAAAACCAA+TGG 0.581362 2.1:+71738318 None:intergenic
GTCACAGTTAATGAAACCAA+TGG 0.581958 2.1:-71738393 MS.gene047539:CDS
AATAACTTCTCATGGAACAA+AGG 0.583408 2.1:-71737887 MS.gene047539:intron
GGATGGTATCAAGAATATGA+AGG 0.583986 2.1:-71735123 MS.gene047539:CDS
GCAACGACATATTTACTGGA+TGG 0.584704 2.1:-71735794 MS.gene047539:CDS
AAGAATGTAAGTGAATTGCT+TGG 0.584920 2.1:+71735048 None:intergenic
ACTTTAACAGTAGTGATCCA+TGG 0.585286 2.1:-71737000 MS.gene047539:CDS
GATCTTGTGACTAACTTACC+TGG 0.587538 2.1:-71738453 MS.gene047539:CDS
AAAGCCCTTCATGCCAGTGA+TGG 0.587552 2.1:-71735969 MS.gene047539:CDS
GGTGGGAGAAAATTAAGCTA+TGG 0.587951 2.1:-71738486 MS.gene047539:CDS
CAAACCTGAAGACAAACCAT+TGG 0.588694 2.1:-71738334 MS.gene047539:CDS
GCTGGAAATCAACAGGAGGT+TGG 0.589995 2.1:+71738430 None:intergenic
TCTTATAGAGATAGGAAATG+GGG 0.595022 2.1:-71738510 MS.gene047539:CDS
TCCCTTCATATTGATCTCAA+GGG 0.595442 2.1:-71737251 MS.gene047539:CDS
TTAGTGGACACTGATGGCAA+GGG 0.606873 2.1:-71737920 MS.gene047539:CDS
GAATTGCTTGGTTTAAAACA+GGG 0.617175 2.1:+71735060 None:intergenic
TGAGATCAATATGAAGGGAA+GGG 0.626331 2.1:+71737255 None:intergenic
ACTTGCCTATCACCAAGCAA+TGG 0.634530 2.1:-71735352 MS.gene047539:CDS
TATAGAGATAGGAAATGGGG+TGG 0.636528 2.1:-71738507 MS.gene047539:CDS
ACCAGTGAATATGCACAACT+AGG 0.646392 2.1:-71737646 MS.gene047539:CDS
TTAGCATAGTCATCCAAACA+TGG 0.653047 2.1:+71736020 None:intergenic
TGAAGATTGTACTCATGGTG+TGG 0.656264 2.1:-71736972 MS.gene047539:CDS
TGTTGGAATAGGTAAGTGGA+TGG 0.657350 2.1:-71735140 MS.gene047539:intron
TCCTTGGTATCATGAAAAGG+AGG 0.657711 2.1:-71735327 MS.gene047539:intron
TTGTTCAGTGGAGACACCGA+CGG 0.662038 2.1:-71735419 MS.gene047539:intron
TAGAACTGGCACTCTACCGT+CGG 0.664010 2.1:+71735403 None:intergenic
ATTTGGGTGACTAGATACCA+AGG 0.692204 2.1:-71736061 MS.gene047539:intron
TAGATACCAAGGATCATGGG+TGG 0.707967 2.1:-71736050 MS.gene047539:CDS
TAGTGCTGGAAATCAACAGG+AGG 0.717710 2.1:+71738426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATATATTATTTGTCT+AGG - chr2.1:71735551-71735570 MS.gene047539:intron 10.0%
!!! AACTTTTAATTGTATTTAAT+AGG + chr2.1:71737379-71737398 None:intergenic 10.0%
!!! AATAATGCTTTTATTTTTTT+GGG - chr2.1:71736437-71736456 MS.gene047539:intron 10.0%
!!! ACTTTTAATTGTATTTAATA+GGG + chr2.1:71737378-71737397 None:intergenic 10.0%
!!! TAATAATGCTTTTATTTTTT+TGG - chr2.1:71736436-71736455 MS.gene047539:intron 10.0%
!!! TTTATTTTTTTTTAATTGGT+GGG - chr2.1:71735351-71735370 MS.gene047539:CDS 10.0%
!! AAAATGTCAATTTAGATTAA+GGG + chr2.1:71737743-71737762 None:intergenic 15.0%
!! AATTAGTATTGTTAATAAAG+AGG - chr2.1:71737943-71737962 MS.gene047539:CDS 15.0%
!! ACATATATATAAAACATACT+TGG + chr2.1:71735831-71735850 None:intergenic 15.0%
!! ACTAATATATGTTATGTTTA+TGG + chr2.1:71735729-71735748 None:intergenic 15.0%
!! ATAAAAATCATGCAAAAATA+TGG + chr2.1:71738122-71738141 None:intergenic 15.0%
!! ATATATGTCATACTTATATT+AGG + chr2.1:71738366-71738385 None:intergenic 15.0%
!! TAAAATGTCAATTTAGATTA+AGG + chr2.1:71737744-71737763 None:intergenic 15.0%
!!! ATTTAAAATGAGACTATATA+CGG - chr2.1:71737996-71738015 MS.gene047539:intron 15.0%
!!! CTTTATTTTTTTTTAATTGG+TGG - chr2.1:71735350-71735369 MS.gene047539:CDS 15.0%
!!! GATTGATCTTTTAATTATTT+TGG + chr2.1:71737324-71737343 None:intergenic 15.0%
!!! TATTTTAACATTTCTCAAAT+AGG + chr2.1:71735410-71735429 None:intergenic 15.0%
!!! TTATTTTTTTTTAATTGGTG+GGG - chr2.1:71735352-71735371 MS.gene047539:CDS 15.0%
!! AAATAAGCTTCTTGTAAATT+GGG + chr2.1:71737830-71737849 None:intergenic 20.0%
!! AAATGTTAAAATAGCGAATT+CGG - chr2.1:71735417-71735436 MS.gene047539:intron 20.0%
!! AAATTGTGTATAAGTTTACT+TGG + chr2.1:71736863-71736882 None:intergenic 20.0%
!! AATTGTGTATAAGTTTACTT+GGG + chr2.1:71736862-71736881 None:intergenic 20.0%
!! ACATATATTAGTATACTTTG+TGG - chr2.1:71735737-71735756 MS.gene047539:CDS 20.0%
!! AGTACAAAAAAGTGAAAAAT+AGG + chr2.1:71737673-71737692 None:intergenic 20.0%
!! ATCAATTAACAATTCTATGT+AGG + chr2.1:71735807-71735826 None:intergenic 20.0%
!! ATGCAAAAATATGGTTTATA+AGG + chr2.1:71738113-71738132 None:intergenic 20.0%
!! TCAAATTTAATAACTTCTCA+TGG - chr2.1:71735680-71735699 MS.gene047539:intron 20.0%
!! TCAATTAACAATTCTATGTA+GGG + chr2.1:71735806-71735825 None:intergenic 20.0%
!! TTTAGATTGATATATACACA+CGG - chr2.1:71737424-71737443 MS.gene047539:intron 20.0%
!!! AAAAATGATTTGTTTTGTGT+TGG - chr2.1:71738418-71738437 MS.gene047539:CDS 20.0%
!!! ATGTTTTATGATCAATTCAT+GGG + chr2.1:71736242-71736261 None:intergenic 20.0%
!!! ATTGGTCATTTATGTTATTT+TGG - chr2.1:71737058-71737077 MS.gene047539:CDS 20.0%
!!! GATTGATCTTTAAGTTAATT+TGG - chr2.1:71737117-71737136 MS.gene047539:intron 20.0%
!!! TATCTTTGTTTTTTGCATAA+TGG - chr2.1:71735984-71736003 MS.gene047539:CDS 20.0%
!!! TGTTCTTTTTTATTACTTAC+AGG - chr2.1:71735580-71735599 MS.gene047539:intron 20.0%
!!! TTTTATTATGTGTATCATAC+AGG + chr2.1:71735537-71735556 None:intergenic 20.0%
! AAAAATGAAGATTGTACTCA+TGG - chr2.1:71736598-71736617 MS.gene047539:intron 25.0%
! AACAAAATGATCATAGAGTT+CGG - chr2.1:71735477-71735496 MS.gene047539:intron 25.0%
! CTATCTCTATAAGAAACAAT+AGG + chr2.1:71735059-71735078 None:intergenic 25.0%
! GAAAACGTTTACAAACTTAA+AGG - chr2.1:71737226-71737245 MS.gene047539:intron 25.0%
! GAAATAAGCTTCTTGTAAAT+TGG + chr2.1:71737831-71737850 None:intergenic 25.0%
! TTAGATTGATATATACACAC+GGG - chr2.1:71737425-71737444 MS.gene047539:intron 25.0%
! TTCTTATAGAGATAGGAAAT+GGG - chr2.1:71735064-71735083 MS.gene047539:CDS 25.0%
! TTTCTTATAGAGATAGGAAA+TGG - chr2.1:71735063-71735082 MS.gene047539:CDS 25.0%
!! ACATAAGTCATTTAAGTTTG+AGG - chr2.1:71737085-71737104 MS.gene047539:CDS 25.0%
!! CATGTTTTATGATCAATTCA+TGG + chr2.1:71736243-71736262 None:intergenic 25.0%
!! CTATTGTTTCTTATAGAGAT+AGG - chr2.1:71735057-71735076 MS.gene047539:CDS 25.0%
!! TAACAATGAACTTTTATCCA+TGG - chr2.1:71736802-71736821 MS.gene047539:intron 25.0%
!! TTTATCTAGAACTTAATGCT+AGG + chr2.1:71736380-71736399 None:intergenic 25.0%
!!! ACATAAGTCTTTTAAGTTTG+AGG + chr2.1:71737297-71737316 None:intergenic 25.0%
!!! ATTGTTTTACTGGTTTTTTG+AGG - chr2.1:71735211-71735230 MS.gene047539:intron 25.0%
!!! TCATTGTTTTGGTTAACATA+AGG + chr2.1:71737186-71737205 None:intergenic 25.0%
AAACGATCAATCCATGAAAA+TGG - chr2.1:71736705-71736724 MS.gene047539:intron 30.0%
AAACTTCTTATGCTGAAGAT+TGG - chr2.1:71736476-71736495 MS.gene047539:intron 30.0%
AAGAATGTAAGTGAATTGCT+TGG + chr2.1:71738530-71738549 None:intergenic 30.0%
AATAACTTCTCATGGAACAA+AGG - chr2.1:71735688-71735707 MS.gene047539:intron 30.0%
AATAGGCTAAATTATACCAG+AGG - chr2.1:71737009-71737028 MS.gene047539:CDS 30.0%
AGAAGCAAACATGTTATTCT+TGG - chr2.1:71735868-71735887 MS.gene047539:intron 30.0%
AGTGATCAAAACAATATCAG+AGG - chr2.1:71736754-71736773 MS.gene047539:intron 30.0%
ATGGTCATAATCTAAGGAAT+TGG - chr2.1:71737625-71737644 MS.gene047539:intron 30.0%
ATTGATCTAACACTTCTTTG+TGG - chr2.1:71737491-71737510 MS.gene047539:CDS 30.0%
CATTTCCATAAAAAACAGTG+AGG + chr2.1:71735772-71735791 None:intergenic 30.0%
GATCATAAAACATGTTATGC+AGG - chr2.1:71736249-71736268 MS.gene047539:intron 30.0%
TAACACTTCTTTGTGGATTT+GGG - chr2.1:71737498-71737517 MS.gene047539:CDS 30.0%
TCTTATAGAGATAGGAAATG+GGG - chr2.1:71735065-71735084 MS.gene047539:CDS 30.0%
TGTTAACCAAAACAATGATG+TGG - chr2.1:71737188-71737207 MS.gene047539:intron 30.0%
! AAACTCGTAAATATTTTGCG+AGG - chr2.1:71736903-71736922 MS.gene047539:CDS 30.0%
! CTTACATTTGCTACATTTAG+AGG - chr2.1:71738476-71738495 MS.gene047539:CDS 30.0%
! GAATTGCTTGGTTTAAAACA+GGG + chr2.1:71738518-71738537 None:intergenic 30.0%
! TGAATTGCTTGGTTTAAAAC+AGG + chr2.1:71738519-71738538 None:intergenic 30.0%
! TTTTATCCATGGATGTGTTA+AGG - chr2.1:71736813-71736832 MS.gene047539:intron 30.0%
! TTTTTATTACTTACAGGTCC+TGG - chr2.1:71735586-71735605 MS.gene047539:intron 30.0%
!! GTACAATCTTCATTTTTCCA+TGG + chr2.1:71736595-71736614 None:intergenic 30.0%
!!! AAGACAAACCATTGGTTTTA+TGG - chr2.1:71735249-71735268 MS.gene047539:intron 30.0%
!!! GATTTGTTTTGTGTTGGAAT+AGG - chr2.1:71738424-71738443 MS.gene047539:CDS 30.0%
!!! GGTAACGATTTTGTTTCTAA+AGG - chr2.1:71738017-71738036 MS.gene047539:intron 30.0%
!!! TGCTAGGTTTTAAATCATGT+AGG + chr2.1:71736364-71736383 None:intergenic 30.0%
!!! TTTTATTTTTTTGGGCAGCT+GGG - chr2.1:71736445-71736464 MS.gene047539:intron 30.0%
AAACATCCTTAACACATCCA+TGG + chr2.1:71736822-71736841 None:intergenic 35.0%
AACAGCAACGACATATTTAC+TGG - chr2.1:71737777-71737796 MS.gene047539:intron 35.0%
AAGAATGCTTAAGCTGTATC+TGG + chr2.1:71738202-71738221 None:intergenic 35.0%
ACCAATTATATATGTACGCG+TGG - chr2.1:71737881-71737900 MS.gene047539:intron 35.0%
ACTTTAACAGTAGTGATCCA+TGG - chr2.1:71736575-71736594 MS.gene047539:intron 35.0%
AGTCTTCTTCAAATGACATC+TGG + chr2.1:71736954-71736973 None:intergenic 35.0%
CAAAACAATATCAGAGGAAG+TGG - chr2.1:71736760-71736779 MS.gene047539:intron 35.0%
CCATTAAGCCATAAAACCAA+TGG + chr2.1:71735260-71735279 None:intergenic 35.0%
CTAAAAAAAGTCTCCTCTGA+CGG + chr2.1:71737409-71737428 None:intergenic 35.0%
CTAACACTTCTTTGTGGATT+TGG - chr2.1:71737497-71737516 MS.gene047539:CDS 35.0%
CTTCAGCATAAGAAGTTTCA+GGG + chr2.1:71736474-71736493 None:intergenic 35.0%
CTTCATACTTGATTGTTCAG+TGG - chr2.1:71738144-71738163 MS.gene047539:intron 35.0%
GGATGGTATCAAGAATATGA+AGG - chr2.1:71738452-71738471 MS.gene047539:CDS 35.0%
GTAAAACAATGCTCTTCCAT+TGG + chr2.1:71735201-71735220 None:intergenic 35.0%
GTCACAGTTAATGAAACCAA+TGG - chr2.1:71735182-71735201 MS.gene047539:intron 35.0%
TAAGAAAATCCAACTCCAAC+AGG + chr2.1:71735899-71735918 None:intergenic 35.0%
TACAAGAAGCTTATTTCAGC+TGG - chr2.1:71737834-71737853 MS.gene047539:intron 35.0%
TAGGAATGGTTGATTATGCT+TGG - chr2.1:71736500-71736519 MS.gene047539:intron 35.0%
TCCCTTCATATTGATCTCAA+GGG - chr2.1:71736324-71736343 MS.gene047539:intron 35.0%
TCTTCAGCATAAGAAGTTTC+AGG + chr2.1:71736475-71736494 None:intergenic 35.0%
TGAGATCAATATGAAGGGAA+GGG + chr2.1:71736323-71736342 None:intergenic 35.0%
TGTTAAAGTCACAGCTTCTT+CGG + chr2.1:71736564-71736583 None:intergenic 35.0%
TTAGCATAGTCATCCAAACA+TGG + chr2.1:71737558-71737577 None:intergenic 35.0%
TTATGTGTATCATACAGGAC+CGG + chr2.1:71735532-71735551 None:intergenic 35.0%
TTATTCTTGGAATCTCCTGT+TGG - chr2.1:71735881-71735900 MS.gene047539:intron 35.0%
TTCCATAAAAAACAGTGAGG+TGG + chr2.1:71735769-71735788 None:intergenic 35.0%
TTCCCTTCATATTGATCTCA+AGG - chr2.1:71736323-71736342 MS.gene047539:intron 35.0%
TTCTTCACTACCTTTCTTCT+TGG - chr2.1:71738545-71738564 MS.gene047539:CDS 35.0%
TTGAGATCAATATGAAGGGA+AGG + chr2.1:71736324-71736343 None:intergenic 35.0%
TTTATGGCTTAATGGAGGTA+AGG - chr2.1:71735265-71735284 MS.gene047539:intron 35.0%
TTTGTGTTGGAATAGGTAAG+TGG - chr2.1:71738431-71738450 MS.gene047539:CDS 35.0%
! AAAACCAATGGTTTGTCTTC+AGG + chr2.1:71735248-71735267 None:intergenic 35.0%
! AAAGTTTGAAATTCCGTCAG+AGG - chr2.1:71737393-71737412 MS.gene047539:intron 35.0%
! CTTACACTTTTCTGCACAAT+TGG - chr2.1:71736081-71736100 MS.gene047539:intron 35.0%
! GATGAAGCACTCATCTTTAA+TGG - chr2.1:71736729-71736748 MS.gene047539:intron 35.0%
! GTTTGAGATTCGTAACAGAT+TGG - chr2.1:71737040-71737059 MS.gene047539:CDS 35.0%
! TCTTATGCTGAAGATTGGTT+AGG - chr2.1:71736481-71736500 MS.gene047539:intron 35.0%
! TTTCTGCCACATCATTGTTT+TGG + chr2.1:71737197-71737216 None:intergenic 35.0%
!! AGAGATTGGTCCATTTTTAG+TGG - chr2.1:71735639-71735658 MS.gene047539:intron 35.0%
!! GCTTCTTCGGATTGTTTTAT+AGG + chr2.1:71736551-71736570 None:intergenic 35.0%
!!! ATCCACCTCACTGTTTTTTA+TGG - chr2.1:71735764-71735783 MS.gene047539:CDS 35.0%
!!! ATGGAAGAGCATTGTTTTAC+TGG - chr2.1:71735201-71735220 MS.gene047539:intron 35.0%
!!! CCATTGGTTTTATGGCTTAA+TGG - chr2.1:71735257-71735276 MS.gene047539:intron 35.0%
!!! CTTTTATTTTTTTGGGCAGC+TGG - chr2.1:71736444-71736463 MS.gene047539:intron 35.0%
!!! TATTGATCTCAAGGGCATTT+TGG - chr2.1:71736332-71736351 MS.gene047539:intron 35.0%
!!! TTGGTTTTATGGCTTAATGG+AGG - chr2.1:71735260-71735279 MS.gene047539:intron 35.0%
AAGGCTCTTGTTCTGTATGA+AGG + chr2.1:71736119-71736138 None:intergenic 40.0%
ACCAGTGAATATGCACAACT+AGG - chr2.1:71735929-71735948 MS.gene047539:intron 40.0%
AGCTTATTTCAGCTGGACTT+AGG - chr2.1:71737841-71737860 MS.gene047539:intron 40.0%
ATTTGGGTGACTAGATACCA+AGG - chr2.1:71737514-71737533 MS.gene047539:intron 40.0%
CAAACCTGAAGACAAACCAT+TGG - chr2.1:71735241-71735260 MS.gene047539:intron 40.0%
CCAGTGATGGTCATAATCTA+AGG - chr2.1:71737619-71737638 MS.gene047539:intron 40.0%
CCATCAGTGTCCACTAAAAA+TGG + chr2.1:71735652-71735671 None:intergenic 40.0%
CCTTAGATTATGACCATCAC+TGG + chr2.1:71737622-71737641 None:intergenic 40.0%
GACTAGATACCAAGGATCAT+GGG - chr2.1:71737522-71737541 MS.gene047539:intron 40.0%
GAGTCCTTGGTATCATGAAA+AGG - chr2.1:71738245-71738264 MS.gene047539:intron 40.0%
GATCTTGTGACTAACTTACC+TGG - chr2.1:71735122-71735141 MS.gene047539:CDS 40.0%
GCAACGACATATTTACTGGA+TGG - chr2.1:71737781-71737800 MS.gene047539:intron 40.0%
GCCACGCGTACATATATAAT+TGG + chr2.1:71737885-71737904 None:intergenic 40.0%
GCCCTTGAGATCAATATGAA+GGG + chr2.1:71736328-71736347 None:intergenic 40.0%
GGTGGGAGAAAATTAAGCTA+TGG - chr2.1:71735089-71735108 MS.gene047539:CDS 40.0%
TATAGAGATAGGAAATGGGG+TGG - chr2.1:71735068-71735087 MS.gene047539:CDS 40.0%
TATGGAGCAACACAAGAGAT+TGG - chr2.1:71735625-71735644 MS.gene047539:intron 40.0%
TCCTAGTTGTGCATATTCAC+TGG + chr2.1:71735933-71735952 None:intergenic 40.0%
TCCTTGGTATCATGAAAAGG+AGG - chr2.1:71738248-71738267 MS.gene047539:intron 40.0%
TGAAGATTGTACTCATGGTG+TGG - chr2.1:71736603-71736622 MS.gene047539:intron 40.0%
TGACTAGATACCAAGGATCA+TGG - chr2.1:71737521-71737540 MS.gene047539:intron 40.0%
TGCCCTTGAGATCAATATGA+AGG + chr2.1:71736329-71736348 None:intergenic 40.0%
TGGTGATTCTCCAAGAAGAA+AGG + chr2.1:71738558-71738577 None:intergenic 40.0%
TGTTGGAATAGGTAAGTGGA+TGG - chr2.1:71738435-71738454 MS.gene047539:CDS 40.0%
TTTCAGCTGGACTTAGGATT+TGG - chr2.1:71737847-71737866 MS.gene047539:intron 40.0%
TTTGCTACATTTAGAGGAGC+TGG - chr2.1:71738482-71738501 MS.gene047539:CDS 40.0%
! ACAAGAGCCTTTTACATAGC+AGG - chr2.1:71736128-71736147 MS.gene047539:intron 40.0%
! ACCTCCTTTTCATGATACCA+AGG + chr2.1:71738252-71738271 None:intergenic 40.0%
! CAATGGTTTGTCTTCAGGTT+TGG + chr2.1:71735243-71735262 None:intergenic 40.0%
! CTCGTAAATATTTTGCGAGG+TGG - chr2.1:71736906-71736925 MS.gene047539:CDS 40.0%
! GAACAAAGGTATGAGGATTG+AGG - chr2.1:71735702-71735721 MS.gene047539:intron 40.0%
! GTGCTTCATCACCATTTTCA+TGG + chr2.1:71736719-71736738 None:intergenic 40.0%
! TCTCAAACTTAAAGCACCTC+TGG + chr2.1:71737028-71737047 None:intergenic 40.0%
! TCTCATGGAACAAAGGTATG+AGG - chr2.1:71735695-71735714 MS.gene047539:intron 40.0%
! TGCTGAAGATTGGTTAGGAA+TGG - chr2.1:71736486-71736505 MS.gene047539:intron 40.0%
! TTTGTCTTCAGGTTTGGTCA+TGG + chr2.1:71735237-71735256 None:intergenic 40.0%
!! CTGTATCTGGTTGATAGAAC+TGG + chr2.1:71738189-71738208 None:intergenic 40.0%
!!! CCATTTTTAGTGGACACTGA+TGG - chr2.1:71735649-71735668 MS.gene047539:intron 40.0%
ACTTGCCTATCACCAAGCAA+TGG - chr2.1:71738223-71738242 MS.gene047539:intron 45.0%
ATACCAAGGACTCCATTGCT+TGG + chr2.1:71738238-71738257 None:intergenic 45.0%
ATGACCATCACTGGCATGAA+GGG + chr2.1:71737613-71737632 None:intergenic 45.0%
ATGATGAGTTCAGCAAGCTC+TGG + chr2.1:71736285-71736304 None:intergenic 45.0%
ATGGAGGTAAGGTCATGCTT+TGG - chr2.1:71735276-71735295 MS.gene047539:intron 45.0%
ATTCGTCTCCGAAAACTAGC+CGG - chr2.1:71735510-71735529 MS.gene047539:intron 45.0%
CAAAGCAGACAGACGTATAG+AGG + chr2.1:71736669-71736688 None:intergenic 45.0%
CAACTAGGAGATGACTTCAC+AGG - chr2.1:71735944-71735963 MS.gene047539:CDS 45.0%
GCTCTCTCCTGCTATGTAAA+AGG + chr2.1:71736138-71736157 None:intergenic 45.0%
GGGTGGTTATGATCCATGTT+TGG - chr2.1:71737542-71737561 MS.gene047539:intron 45.0%
TAGATACCAAGGATCATGGG+TGG - chr2.1:71737525-71737544 MS.gene047539:intron 45.0%
TATGACCATCACTGGCATGA+AGG + chr2.1:71737614-71737633 None:intergenic 45.0%
TCATAACCACCCATGATCCT+TGG + chr2.1:71737534-71737553 None:intergenic 45.0%
TGAAGGGCTTTCTGAACATC+TGG + chr2.1:71737597-71737616 None:intergenic 45.0%
TGACATATCCAGCATAGTGC+TGG + chr2.1:71735166-71735185 None:intergenic 45.0%
TTGGAATCTCCTGTTGGAGT+TGG - chr2.1:71735887-71735906 MS.gene047539:intron 45.0%
! GCATAGTGCTGGAAATCAAC+AGG + chr2.1:71735155-71735174 None:intergenic 45.0%
! GTTGATTTCCAGCACTATGC+TGG - chr2.1:71735155-71735174 MS.gene047539:intron 45.0%
! TAGTGCTGGAAATCAACAGG+AGG + chr2.1:71735152-71735171 None:intergenic 45.0%
! TTAGTGGACACTGATGGCAA+GGG - chr2.1:71735655-71735674 MS.gene047539:intron 45.0%
! TTTAGTGGACACTGATGGCA+AGG - chr2.1:71735654-71735673 MS.gene047539:intron 45.0%
!! GACTTAGGATTTGGCTCTAC+AGG - chr2.1:71737856-71737875 MS.gene047539:intron 45.0%
!!! ATACAGGACCGGCTAGTTTT+CGG + chr2.1:71735521-71735540 None:intergenic 45.0%
!! TATATTGAATATTATTAAAT+AGG - chr2.1:71736992-71737011 MS.gene047539:CDS 5.0%
!! TTTAATAATATTCAATATAT+CGG + chr2.1:71736991-71737010 None:intergenic 5.0%
!!! TTACTTTATTTTTTTTTAAT+TGG - chr2.1:71735347-71735366 MS.gene047539:CDS 5.0%
AAAGCCCTTCATGCCAGTGA+TGG - chr2.1:71737606-71737625 MS.gene047539:intron 50.0%
AGAGATAGGAAATGGGGTGG+TGG - chr2.1:71735071-71735090 MS.gene047539:CDS 50.0%
ATAGCAGGAGAGAGCTATGC+AGG - chr2.1:71736143-71736162 MS.gene047539:intron 50.0%
ATCAGAGGAAGTGGTGTGTG+TGG - chr2.1:71736769-71736788 MS.gene047539:intron 50.0%
GAGATAGGAAATGGGGTGGT+GGG - chr2.1:71735072-71735091 MS.gene047539:CDS 50.0%
GCTGGAAATCAACAGGAGGT+TGG + chr2.1:71735148-71735167 None:intergenic 50.0%
GGATGCTCTTCTGTGGGATA+TGG - chr2.1:71735607-71735626 MS.gene047539:intron 50.0%
TAGAACTGGCACTCTACCGT+CGG + chr2.1:71738175-71738194 None:intergenic 50.0%
TCACCAAGCAATGGAGTCCT+TGG - chr2.1:71738232-71738251 MS.gene047539:intron 50.0%
TTGTTCAGTGGAGACACCGA+CGG - chr2.1:71738156-71738175 MS.gene047539:intron 50.0%
! AAATCAACAGGAGGTTGGCC+AGG + chr2.1:71735143-71735162 None:intergenic 50.0%
! GGACTCCATTGCTTGGTGAT+AGG + chr2.1:71738231-71738250 None:intergenic 50.0%
!! TATCCCACAGAAGAGCATCC+AGG + chr2.1:71735607-71735626 None:intergenic 50.0%
AGGTCCTGGATGCTCTTCTG+TGG - chr2.1:71735600-71735619 MS.gene047539:intron 55.0%
GGTCCTGGATGCTCTTCTGT+GGG - chr2.1:71735601-71735620 MS.gene047539:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 71735005 71738592 71735005 ID=MS.gene047539
chr2.1 mRNA 71735005 71738592 71735005 ID=MS.gene047539.t1;Parent=MS.gene047539
chr2.1 exon 71738316 71738592 71738316 ID=MS.gene047539.t1.exon1;Parent=MS.gene047539.t1
chr2.1 CDS 71738316 71738592 71738316 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71737888 71737995 71737888 ID=MS.gene047539.t1.exon2;Parent=MS.gene047539.t1
chr2.1 CDS 71737888 71737995 71737888 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71737632 71737727 71737632 ID=MS.gene047539.t1.exon3;Parent=MS.gene047539.t1
chr2.1 CDS 71737632 71737727 71737632 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71737433 71737525 71737433 ID=MS.gene047539.t1.exon4;Parent=MS.gene047539.t1
chr2.1 CDS 71737433 71737525 71737433 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71737244 71737326 71737244 ID=MS.gene047539.t1.exon5;Parent=MS.gene047539.t1
chr2.1 CDS 71737244 71737326 71737244 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71736847 71737134 71736847 ID=MS.gene047539.t1.exon6;Parent=MS.gene047539.t1
chr2.1 CDS 71736847 71737134 71736847 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71735939 71736069 71735939 ID=MS.gene047539.t1.exon7;Parent=MS.gene047539.t1
chr2.1 CDS 71735939 71736069 71735939 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71735720 71735815 71735720 ID=MS.gene047539.t1.exon8;Parent=MS.gene047539.t1
chr2.1 CDS 71735720 71735815 71735720 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71735328 71735433 71735328 ID=MS.gene047539.t1.exon9;Parent=MS.gene047539.t1
chr2.1 CDS 71735328 71735433 71735328 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
chr2.1 exon 71735005 71735151 71735005 ID=MS.gene047539.t1.exon10;Parent=MS.gene047539.t1
chr2.1 CDS 71735005 71735151 71735005 ID=cds.MS.gene047539.t1;Parent=MS.gene047539.t1
Gene Sequence

>MS.gene047539

ATGACAAGTTTCTACACATTGGCTTTGATAGTGTTGTTTTTACATGTGAATCCTATTGTTTCTTATAGAGATAGGAAATGGGGTGGTGGGAGAAAATTAAGCTATGGTGATAATGATGATCTTGTGACTAACTTACCTGGCCAACCTCCTGTTGATTTCCAGCACTATGCTGGATATGTCACAGTTAATGAAACCAATGGAAGAGCATTGTTTTACTGGTTTTTTGAGGCCATGACCAAACCTGAAGACAAACCATTGGTTTTATGGCTTAATGGAGGTAAGGTCATGCTTTGGTATAAAAGTAAATGACAAATTTGAGAACAAAAGTTTATTGAACTCATTTTACTTTATTTTTTTTTAATTGGTGGGGAAGAGTGTGATGTTACTTTTGTATGTTTTCAACCTATTTGAGAAATGTTAAAATAGCGAATTCGGCTCTAAAGAAGACATATAAATAAACACATAAGAATACAACAAAATGATCATAGAGTTCGGTCAATTGTGCATTCGTCTCCGAAAACTAGCCGGTCCTGTATGATACACATAATAAAATATATTATTTGTCTAGGTGACAATGTTCTTTTTTATTACTTACAGGTCCTGGATGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACACTGATGGCAAGGGTCTCAAATTTAATAACTTCTCATGGAACAAAGGTATGAGGATTGAGGACCATAAACATAACATATATTAGTATACTTTGTGGCACAATCCACCTCACTGTTTTTTATGGAAATGTAAAAAAATTTCCCTACATAGAATTGTTAATTGATGCCAAGTATGTTTTATATATATGTGAAATGTAATATCATGCAGAAGCAAACATGTTATTCTTGGAATCTCCTGTTGGAGTTGGATTTTCTTACTCGAATACAACCAGTGAATATGCACAACTAGGAGATGACTTCACAGGTTTTTACTTCATCTAAATATCTTTGTTTTTTGCATAATGGTCATCAAATGCTACAAAATAACTCGATAATTAATTTTAATGTGCTCTATTGACTATTTGAAACAGCTAACGATGCTTACACTTTTCTGCACAATTGGTTTCTCAAGTATCCTTCATACAGAACAAGAGCCTTTTACATAGCAGGAGAGAGCTATGCAGGTATTGAAATCAAAATCATTGTGTCTGAGTATCGAGTTCGATTCTTAATGATAAAAAAACATGTCACTTTTAGTCCCATGAATTGATCATAAAACATGTTATGCAGGAAAGTATGTACCAGAGCTTGCTGAACTCATCATTGATAGAAACAATAACCCTTCCCTTCATATTGATCTCAAGGGCATTTTGGTATGCTCCTACATGATTTAAAACCTAGCATTAAGTTCTAGATAAAAATCTTAGTTTAATATAAATATGAATGAGCACAAAATAATAATGCTTTTATTTTTTTGGGCAGCTGGGAAACCCTGAAACTTCTTATGCTGAAGATTGGTTAGGAATGGTTGATTATGCTTGGAGTCATGCAGTGATATCTGATGAAACCTATAAAACAATCCGAAGAAGCTGTGACTTTAACAGTAGTGATCCATGGAAAAATGAAGATTGTACTCATGGTGTGGATGAAGTGCTTAAACAGTACAATGAAATTGATATTTACAGCCTCTATACGTCTGTCTGCTTTGCTAGTACAGCGCGATCAAACGATCAATCCATGAAAATGGTGATGAAGCACTCATCTTTAATGGTGAGTGATCAAAACAATATCAGAGGAAGTGGTGTGTGTGGAAATTGATTTTAACAATGAACTTTTATCCATGGATGTGTTAAGGATGTTTTAATATGTTACTTTTTGCCCAAGTAAACTTATACACAATTTGTTTTGAATTCTTTTTGAGAAAACTCGTAAATATTTTGCGAGGTGGAAAACAAATGCGTGAAATTTCACCAGATGTCATTTGAAGAAGACTTTTCTTACAATAGACCGATATATTGAATATTATTAAATAGGCTAAATTATACCAGAGGTGCTTTAAGTTTGAGATTCGTAACAGATTGGTCATTTATGTTATTTTGGTCACACATAAGTCATTTAAGTTTGAGGTTTGTAACAGATTGATCTTTAAGTTAATTTGGTCACACATAAGTACTTTAAGTTTGTAAACGTTTTCAATTTAGTCCTTATGTTAACCAAAACAATGATGTGGCAGAAAGACTAAATTGAAAACGTTTACAAACTTAAAGGACTTGTGTGTGACGAAAATAACTTAAATGATCAATCTGTTACAAACCTCAAACTTAAAAGACTTATGTGTGACCAAAATAATTAAAAGATCAATCTATTACAAACGTTAAACTTAAACTTAAAGAACCCTATTAAATACAATTAAAAGTTTGAAATTCCGTCAGAGGAGACTTTTTTTAGATTGATATATACACACGGGCGTGCGTGCGTATATATGTACATGTTTTGAATTGTGTATATAAATTGATCTAACACTTCTTTGTGGATTTGGGTGACTAGATACCAAGGATCATGGGTGGTTATGATCCATGTTTGGATGACTATGCTAAAGCTTTTTACAACAAACCAGATGTTCAGAAAGCCCTTCATGCCAGTGATGGTCATAATCTAAGGAATTGGAGTATTTGCAAGTATATATTGTCCTATTTTTCACTTTTTTGTACTAATATCTACATAAATTTGATTAATTTAATTTTTTATGAATTTGATTACCCTTAATCTAAATTGACATTTTATCTGTTAATAAAAAACAGCAACGACATATTTACTGGATGGAAACAAACAAAACATTCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCTGGACTTAGGATTTGGCTCTACAGGTAACCAATTATATATGTACGCGTGGCGCGCATCGTAAATTTCTGAATTTTCATCTTCAAAAACAAATTAGTATTGTTAATAAAGAGGATATTTAAAATAAAATAAAATTATCTAGTAATTTAAAATGAGACTATATACGGTAACGATTTTGTTTCTAAAGGAAAATAAACTTAAGTGACAAAGCTAATAATATTGTTCAATTTGAACTTTTTCAATAGATTTAATTAAAGACCTTATAAACCATATTTTTGCATGATTTTTATTTCTTCATACTTGATTGTTCAGTGGAGACACCGACGGTAGAGTGCCAGTTCTATCAACCAGATACAGCTTAAGCATTCTTGACTTGCCTATCACCAAGCAATGGAGTCCTTGGTATCATGAAAAGGAGGTACAAATATTATGAATTGATTTTTTTTAATATTTTTTATAATAACTCATGAATTAATATAGATAAATTGAATTTGCATTAAAAGATCATATTCCTAATATAAGTATGACATATATTGATGATGTATTTGCTATCATGATTCATTTTTAAAAATGATTTGTTTTGTGTTGGAATAGGTAAGTGGATGGTATCAAGAATATGAAGGACTTACATTTGCTACATTTAGAGGAGCTGGTCATGCAGTGCCCTGTTTTAAACCAAGCAATTCACTTACATTCTTCACTACCTTTCTTCTTGGAGAATCACCACCTTCAACTAGATAA
Protein sequence

>MS.gene047539.t1

MTSFYTLALIVLFLHVNPIVSYRDRKWGGGRKLSYGDNDDLVTNLPGQPPVDFQHYAGYVTVNETNGRALFYWFFEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKYPSYRTRAFYIAGESYAGKYVPELAELIIDRNNNPSLHIDLKGILLGNPETSYAEDWLGMVDYAWSHAVISDETYKTIRRSCDFNSSDPWKNEDCTHGVDEVLKQYNEIDIYSLYTSVCFASTARSNDQSMKMVMKHSSLMIPRIMGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLRNWSICNNDIFTGWKQTKHSVIPIYKKLISAGLRIWLYSGDTDGRVPVLSTRYSLSILDLPITKQWSPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLTFFTTFLLGESPPSTR