Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007204.t1 | AES82055.2 | 95.4 | 389 | 16 | 1 | 1 | 389 | 15 | 401 | 3.20E-224 | 787.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007204.t1 | Q9FVS1 | 44.5 | 355 | 183 | 6 | 34 | 384 | 3 | 347 | 1.1e-84 | 315.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007204.t1 | G7KQW3 | 95.4 | 389 | 16 | 1 | 1 | 389 | 15 | 401 | 2.3e-224 | 787.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007204 | MS.gene33922 | PPI |
| MS.gene007204 | MS.gene42893 | PPI |
| MS.gene007204 | MS.gene98671 | PPI |
| MS.gene007204 | MS.gene071037 | PPI |
| MS.gene007204 | MS.gene024275 | PPI |
| MS.gene007204 | MS.gene42889 | PPI |
| MS.gene007204 | MS.gene009311 | PPI |
| MS.gene007204 | MS.gene005636 | PPI |
| MS.gene007204 | MS.gene52540 | PPI |
| MS.gene007204 | MS.gene95088 | PPI |
| MS.gene007204 | MS.gene024343 | PPI |
| MS.gene007204 | MS.gene75065 | PPI |
| MS.gene007204 | MS.gene98670 | PPI |
| MS.gene007204 | MS.gene59977 | PPI |
| MS.gene007204 | MS.gene05311 | PPI |
| MS.gene007204 | MS.gene064044 | PPI |
| MS.gene007204 | MS.gene53925 | PPI |
| MS.gene007204 | MS.gene024341 | PPI |
| MS.gene007204 | MS.gene47120 | PPI |
| MS.gene007204 | MS.gene012753 | PPI |
| MS.gene007204 | MS.gene98673 | PPI |
| MS.gene007204 | MS.gene67877 | PPI |
| MS.gene007204 | MS.gene071039 | PPI |
| MS.gene007204 | MS.gene42891 | PPI |
| MS.gene007204 | MS.gene43440 | PPI |
| MS.gene007204 | MS.gene75067 | PPI |
| MS.gene007204 | MS.gene42887 | PPI |
| MS.gene007204 | MS.gene03004 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007204.t1 | MTR_7g104790 | 95.373 | 389 | 16 | 1 | 1 | 389 | 15 | 401 | 0.0 | 745 |
| MS.gene007204.t1 | MTR_7g104790 | 95.251 | 379 | 16 | 1 | 11 | 389 | 1 | 377 | 0.0 | 725 |
| MS.gene007204.t1 | MTR_7g104785 | 80.716 | 363 | 55 | 3 | 26 | 385 | 17 | 367 | 0.0 | 589 |
| MS.gene007204.t1 | MTR_1g059840 | 64.304 | 381 | 124 | 6 | 12 | 387 | 1 | 374 | 1.25e-173 | 489 |
| MS.gene007204.t1 | MTR_7g104760 | 70.629 | 143 | 25 | 1 | 225 | 367 | 14 | 139 | 1.75e-66 | 207 |
| MS.gene007204.t1 | MTR_2g034630 | 25.623 | 281 | 146 | 11 | 111 | 381 | 124 | 351 | 1.24e-14 | 75.1 |
| MS.gene007204.t1 | MTR_3g114970 | 25.826 | 333 | 185 | 14 | 44 | 339 | 5 | 312 | 1.67e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007204.t1 | AT1G57790 | 44.507 | 355 | 183 | 6 | 34 | 384 | 3 | 347 | 1.70e-100 | 302 |
| MS.gene007204.t1 | AT3G56470 | 41.880 | 351 | 179 | 7 | 42 | 386 | 27 | 358 | 3.98e-82 | 256 |
| MS.gene007204.t1 | AT4G00893 | 39.205 | 352 | 199 | 8 | 43 | 388 | 44 | 386 | 9.54e-79 | 248 |
| MS.gene007204.t1 | AT4G12370 | 39.159 | 309 | 169 | 9 | 91 | 389 | 1 | 300 | 1.79e-67 | 216 |
| MS.gene007204.t1 | AT4G10660 | 41.000 | 300 | 161 | 6 | 72 | 364 | 3 | 293 | 2.05e-67 | 216 |
| MS.gene007204.t1 | AT1G49360 | 34.217 | 415 | 223 | 16 | 1 | 382 | 37 | 434 | 1.46e-53 | 184 |
| MS.gene007204.t1 | AT1G49360 | 34.217 | 415 | 223 | 16 | 1 | 382 | 60 | 457 | 2.87e-53 | 184 |
| MS.gene007204.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 47 | 383 | 8 | 355 | 1.43e-51 | 177 |
| MS.gene007204.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 47 | 383 | 8 | 355 | 1.43e-51 | 177 |
| MS.gene007204.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 47 | 383 | 8 | 355 | 1.43e-51 | 177 |
| MS.gene007204.t1 | AT3G18720 | 34.085 | 355 | 189 | 11 | 46 | 384 | 51 | 376 | 2.84e-50 | 173 |
| MS.gene007204.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 56 | 248 | 1 | 189 | 7.26e-48 | 163 |
| MS.gene007204.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 56 | 248 | 1 | 189 | 7.26e-48 | 163 |
| MS.gene007204.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 43 | 174 | 9 | 134 | 2.53e-35 | 127 |
| MS.gene007204.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 43 | 174 | 9 | 134 | 2.53e-35 | 127 |
| MS.gene007204.t1 | AT2G44735 | 40.260 | 154 | 78 | 5 | 149 | 298 | 109 | 252 | 4.77e-23 | 99.8 |
| MS.gene007204.t1 | AT4G10700 | 41.270 | 126 | 66 | 3 | 268 | 386 | 119 | 243 | 1.36e-20 | 90.5 |
| MS.gene007204.t1 | AT4G10700 | 47.312 | 93 | 43 | 2 | 72 | 164 | 3 | 89 | 7.43e-20 | 88.6 |
Find 87 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTAACTTGAAAATTAT+TGG | 0.158009 | 7.1:+6787832 | None:intergenic |
| GAACCACCAAAAGACTTTAT+TGG | 0.163822 | 7.1:-6787571 | MS.gene007204:CDS |
| CAGAAGTTCTCAAAAGTATT+TGG | 0.184683 | 7.1:+6787598 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.1:-6787694 | MS.gene007204:CDS |
| TTTCCATAGAAACGGACTTT+AGG | 0.272121 | 7.1:+6787691 | None:intergenic |
| GATCTAACTTGAAAATTATT+GGG | 0.325599 | 7.1:+6787833 | None:intergenic |
| CTCTCTTTAATCCCTTTACT+AGG | 0.326943 | 7.1:-6788266 | MS.gene007204:CDS |
| CAAGTTAGATCTGACACTAA+TGG | 0.329403 | 7.1:-6787821 | MS.gene007204:CDS |
| ATCCAGCCAATAAAGTCTTT+TGG | 0.339525 | 7.1:+6787565 | None:intergenic |
| AGAACTCTCTGCTAAGCATT+TGG | 0.351257 | 7.1:+6787939 | None:intergenic |
| TTGACCCACTTGAACGTACT+TGG | 0.354769 | 7.1:-6787984 | MS.gene007204:CDS |
| TTCCATAGAAACGGACTTTA+GGG | 0.361226 | 7.1:+6787692 | None:intergenic |
| AACATTCTTCGCATGATGTC+GGG | 0.375799 | 7.1:-6789196 | MS.gene007204:CDS |
| TCTTGTCTCGGTTGGATGTT+GGG | 0.383783 | 7.1:-6788545 | MS.gene007204:CDS |
| GCTATAAGCACGTGTTATCC+TGG | 0.393896 | 7.1:-6788126 | MS.gene007204:CDS |
| TCTTGTGCTCCAACATCAAC+TGG | 0.401697 | 7.1:-6788192 | MS.gene007204:CDS |
| GAACTCTCTGCTAAGCATTT+GGG | 0.407425 | 7.1:+6787940 | None:intergenic |
| ATGGTTGGTTATTGCTAAAC+CGG | 0.409750 | 7.1:-6788326 | MS.gene007204:CDS |
| GGAATTGTTCTTGTCTCGGT+TGG | 0.421431 | 7.1:-6788553 | MS.gene007204:CDS |
| TTCCCTTGAGTTGCCAGAGT+TGG | 0.426018 | 7.1:-6788376 | MS.gene007204:CDS |
| AACAATTCCAAGACTTCAGC+AGG | 0.429634 | 7.1:+6788567 | None:intergenic |
| TTCTTGTCTCGGTTGGATGT+TGG | 0.436225 | 7.1:-6788546 | MS.gene007204:CDS |
| TCTTGGAATTGTTCTTGTCT+CGG | 0.438217 | 7.1:-6788557 | MS.gene007204:CDS |
| TATTGCTAAACCGGCAGGAC+TGG | 0.447316 | 7.1:-6788317 | MS.gene007204:CDS |
| ACAATTTGGAGCTGCAAACA+TGG | 0.451046 | 7.1:-6788599 | MS.gene007204:CDS |
| TTCGCATGATGTCGGGGAAA+AGG | 0.455236 | 7.1:-6789189 | MS.gene007204:CDS |
| CTCTGGCAACTCAAGGGAAT+AGG | 0.460842 | 7.1:+6788380 | None:intergenic |
| CGATCTCCCTGCTGAAGTCT+TGG | 0.469551 | 7.1:-6788574 | MS.gene007204:CDS |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.1:-6787793 | MS.gene007204:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.470767 | 7.1:+6788396 | None:intergenic |
| TCTCTTTAATCCCTTTACTA+GGG | 0.471216 | 7.1:-6788265 | MS.gene007204:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.471683 | 7.1:+6788454 | None:intergenic |
| TGATATGTCCTGTCAAACTT+TGG | 0.477303 | 7.1:+6788228 | None:intergenic |
| CTTGAGTTGCCAGAGTTGGA+TGG | 0.483726 | 7.1:-6788372 | MS.gene007204:CDS |
| CCTGTCACGACACTGCTCAC+TGG | 0.484710 | 7.1:+6787627 | None:intergenic |
| GTGATCAGATCCCTAGTAAA+GGG | 0.491655 | 7.1:+6788255 | None:intergenic |
| CTGTCACGACACTGCTCACT+GGG | 0.495007 | 7.1:+6787628 | None:intergenic |
| CACCAAAAGACTTTATTGGC+TGG | 0.495682 | 7.1:-6787567 | MS.gene007204:CDS |
| CTGAGCGACAGAGGTTGGCT+AGG | 0.495793 | 7.1:-6788012 | MS.gene007204:CDS |
| TGAGCGACAGAGGTTGGCTA+GGG | 0.496901 | 7.1:-6788011 | MS.gene007204:CDS |
| CCAACCTCCGCCAGTCCTGC+CGG | 0.497826 | 7.1:+6788307 | None:intergenic |
| CCAGTGAGCAGTGTCGTGAC+AGG | 0.497864 | 7.1:-6787627 | MS.gene007204:CDS |
| CGTGTTTGCTATACAAAAGA+TGG | 0.502296 | 7.1:-6788345 | MS.gene007204:CDS |
| CTATAAGCACGTGTTATCCT+GGG | 0.505414 | 7.1:-6788125 | MS.gene007204:CDS |
| CAGGACTGGCGGAGGTTGGA+CGG | 0.511557 | 7.1:-6788303 | MS.gene007204:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.1:-6788509 | MS.gene007204:CDS |
| CCGGCAGGACTGGCGGAGGT+TGG | 0.523905 | 7.1:-6788307 | MS.gene007204:CDS |
| ATTGTCTGAGCGACAGAGGT+TGG | 0.524197 | 7.1:-6788017 | MS.gene007204:CDS |
| CAAGACTTCAGCAGGGAGAT+CGG | 0.525981 | 7.1:+6788575 | None:intergenic |
| CATTCTAGGACTTACGTCAC+TGG | 0.528125 | 7.1:-6787739 | MS.gene007204:CDS |
| TTGGTTATTGCTAAACCGGC+AGG | 0.529301 | 7.1:-6788322 | MS.gene007204:CDS |
| CGTGATCAGATCCCTAGTAA+AGG | 0.536285 | 7.1:+6788254 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 7.1:+6788197 | None:intergenic |
| TCACGCTGCCAAAGTTTGAC+AGG | 0.539518 | 7.1:-6788236 | MS.gene007204:CDS |
| GTCACTGGAATAATGAGAAA+CGG | 0.542182 | 7.1:-6787724 | MS.gene007204:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.542919 | 7.1:-6787816 | MS.gene007204:CDS |
| TCTGCTAAGCATTTGGGCGG+AGG | 0.544418 | 7.1:+6787946 | None:intergenic |
| CAACATTCTTCGCATGATGT+CGG | 0.545714 | 7.1:-6789197 | MS.gene007204:CDS |
| TTTGCTATACAAAAGATGGT+TGG | 0.546454 | 7.1:-6788341 | MS.gene007204:CDS |
| CATCCAACTCTGGCAACTCA+AGG | 0.553068 | 7.1:+6788373 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.1:+6788447 | None:intergenic |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.1:-6787809 | MS.gene007204:CDS |
| TGCTAAACCGGCAGGACTGG+CGG | 0.569550 | 7.1:-6788314 | MS.gene007204:CDS |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.1:-6788631 | MS.gene007204:CDS |
| ACACGACATCCATCCAACTC+TGG | 0.576746 | 7.1:+6788363 | None:intergenic |
| ATAACACATCCAGTTGATGT+TGG | 0.578438 | 7.1:+6788183 | None:intergenic |
| CTTGTCTCGGTTGGATGTTG+GGG | 0.581584 | 7.1:-6788544 | MS.gene007204:CDS |
| ATCCAACTCTGGCAACTCAA+GGG | 0.590798 | 7.1:+6788374 | None:intergenic |
| TAAACCGGCAGGACTGGCGG+AGG | 0.593956 | 7.1:-6788311 | MS.gene007204:CDS |
| ACAGTCCAAGTACGTTCAAG+TGG | 0.603382 | 7.1:+6787979 | None:intergenic |
| CAATTTGGAGCTGCAAACAT+GGG | 0.606485 | 7.1:-6788598 | MS.gene007204:CDS |
| GCTCACTGGGATGATATCTA+CGG | 0.610400 | 7.1:+6787641 | None:intergenic |
| ACATTCTTCGCATGATGTCG+GGG | 0.620719 | 7.1:-6789195 | MS.gene007204:CDS |
| CAGTGAGCAGTGTCGTGACA+GGG | 0.621223 | 7.1:-6787626 | MS.gene007204:CDS |
| GTTGACTACACGTAAAGAAG+TGG | 0.629678 | 7.1:+6788476 | None:intergenic |
| AATAGGTCTTACGCTGCACA+GGG | 0.638547 | 7.1:+6788397 | None:intergenic |
| CTCTCTGCTAAGCATTTGGG+CGG | 0.648219 | 7.1:+6787943 | None:intergenic |
| TTTGTAGTTTATATATGTTG+TGG | 0.650518 | 7.1:-6787862 | MS.gene007204:CDS |
| AGTTTATATATGTTGTGGTG+AGG | 0.651124 | 7.1:-6787857 | MS.gene007204:CDS |
| GAGCGACAGAGGTTGGCTAG+GGG | 0.671202 | 7.1:-6788010 | MS.gene007204:CDS |
| GTGTAGTCAACCAATCACCT+TGG | 0.672007 | 7.1:-6788464 | MS.gene007204:CDS |
| CAGTCCAAGTACGTTCAAGT+GGG | 0.682692 | 7.1:+6787980 | None:intergenic |
| GACCACTGTTAATTATGACG+CGG | 0.704466 | 7.1:-6788091 | MS.gene007204:CDS |
| TATAAGCACGTGTTATCCTG+GGG | 0.707016 | 7.1:-6788124 | MS.gene007204:CDS |
| ACAATTCCAAGACTTCAGCA+GGG | 0.713188 | 7.1:+6788568 | None:intergenic |
| TACCGCGTCATAATTAACAG+TGG | 0.732690 | 7.1:+6788089 | None:intergenic |
| AAATTTATGATAGAGCACAA+AGG | 0.741593 | 7.1:-6787892 | MS.gene007204:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATTATTATTATTGCTA+GGG | - | chr7.1:6787666-6787685 | MS.gene007204:CDS | 15.0% |
| !! | AGCAATAATAATAATATGTA+TGG | + | chr7.1:6787665-6787684 | None:intergenic | 15.0% |
| !! | CAATAATAATAATATGTATG+GGG | + | chr7.1:6787663-6787682 | None:intergenic | 15.0% |
| !! | GCAATAATAATAATATGTAT+GGG | + | chr7.1:6787664-6787683 | None:intergenic | 15.0% |
| !! | TACATATTATTATTATTGCT+AGG | - | chr7.1:6787665-6787684 | MS.gene007204:CDS | 15.0% |
| !! | TTTAGATTGATAAACATATT+TGG | - | chr7.1:6787988-6788007 | MS.gene007204:CDS | 15.0% |
| !!! | AATTTTGTTCAACAATTAAT+TGG | - | chr7.1:6787710-6787729 | MS.gene007204:CDS | 15.0% |
| !! | AGATCTAACTTGAAAATTAT+TGG | + | chr7.1:6788946-6788965 | None:intergenic | 20.0% |
| !! | GATCTAACTTGAAAATTATT+GGG | + | chr7.1:6788945-6788964 | None:intergenic | 20.0% |
| !! | GTTTCATCTATATTTCATAT+TGG | - | chr7.1:6787839-6787858 | MS.gene007204:CDS | 20.0% |
| !! | TATGATTTCTATATCCAATT+CGG | - | chr7.1:6787803-6787822 | MS.gene007204:CDS | 20.0% |
| !! | TTTGTAGTTTATATATGTTG+TGG | - | chr7.1:6788913-6788932 | MS.gene007204:intron | 20.0% |
| !!! | TCAATTTTTTGGCTTAATAA+TGG | - | chr7.1:6787744-6787763 | MS.gene007204:CDS | 20.0% |
| ! | AAATTTATGATAGAGCACAA+AGG | - | chr7.1:6788883-6788902 | MS.gene007204:intron | 25.0% |
| ! | AGATTGATAAACATATTTGG+TGG | - | chr7.1:6787991-6788010 | MS.gene007204:CDS | 25.0% |
| ! | ATAATAATATGTATGGGGTT+AGG | + | chr7.1:6787658-6787677 | None:intergenic | 25.0% |
| ! | CATGAAAAATTTAACCGAAT+TGG | + | chr7.1:6787820-6787839 | None:intergenic | 25.0% |
| ! | CTTATGTATTTCCCAAAAAA+GGG | - | chr7.1:6788334-6788353 | MS.gene007204:CDS | 25.0% |
| ! | GATTGATAAACATATTTGGT+GGG | - | chr7.1:6787992-6788011 | MS.gene007204:CDS | 25.0% |
| ! | TAGTTAATTCACAATAAAGC+TGG | + | chr7.1:6787876-6787895 | None:intergenic | 25.0% |
| !! | ATAAGCTTGTCTTTTCTAAT+GGG | - | chr7.1:6788728-6788747 | MS.gene007204:intron | 25.0% |
| !! | ATATTAATTTTCAGACGTGT+TGG | - | chr7.1:6788613-6788632 | MS.gene007204:CDS | 25.0% |
| !!! | CATAACAATTACCCTTTTTT+GGG | + | chr7.1:6788348-6788367 | None:intergenic | 25.0% |
| !!! | CATTTTTAAGTTGATGATTG+TGG | - | chr7.1:6787897-6787916 | MS.gene007204:CDS | 25.0% |
| !!! | TCATAACAATTACCCTTTTT+TGG | + | chr7.1:6788349-6788368 | None:intergenic | 25.0% |
| !!! | TTGCACTAACTTCAATTTTT+TGG | - | chr7.1:6787733-6787752 | MS.gene007204:CDS | 25.0% |
| AAAAAATGAAGTTAGCTAGC+AGG | + | chr7.1:6788059-6788078 | None:intergenic | 30.0% | |
| AGTTTATATATGTTGTGGTG+AGG | - | chr7.1:6788918-6788937 | MS.gene007204:intron | 30.0% | |
| GCTTATGTATTTCCCAAAAA+AGG | - | chr7.1:6788333-6788352 | MS.gene007204:CDS | 30.0% | |
| TCTCTTTAATCCCTTTACTA+GGG | - | chr7.1:6788510-6788529 | MS.gene007204:CDS | 30.0% | |
| TGAGGTAAAAAGCAACAATT+TGG | - | chr7.1:6788162-6788181 | MS.gene007204:CDS | 30.0% | |
| TTGTTGAACAAAATTGAGAG+TGG | + | chr7.1:6787705-6787724 | None:intergenic | 30.0% | |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr7.1:6788727-6788746 | MS.gene007204:intron | 30.0% |
| ! | TTTGCTATACAAAAGATGGT+TGG | - | chr7.1:6788434-6788453 | MS.gene007204:CDS | 30.0% |
| !! | CAAATACTTTTGAGAACTTC+TGG | - | chr7.1:6789178-6789197 | MS.gene007204:CDS | 30.0% |
| !! | CAGAAGTTCTCAAAAGTATT+TGG | + | chr7.1:6789180-6789199 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr7.1:6789022-6789041 | MS.gene007204:intron | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.1:6788324-6788343 | None:intergenic | 35.0% | |
| AATATGTATGGGGTTAGGTT+AGG | + | chr7.1:6787653-6787672 | None:intergenic | 35.0% | |
| AGTAAACAGAACAGAAACAG+TGG | + | chr7.1:6787954-6787973 | None:intergenic | 35.0% | |
| ATATGTATGGGGTTAGGTTA+GGG | + | chr7.1:6787652-6787671 | None:intergenic | 35.0% | |
| ATTCACAATAAAGCTGGTCA+TGG | + | chr7.1:6787870-6787889 | None:intergenic | 35.0% | |
| CAAGTTAGATCTGACACTAA+TGG | - | chr7.1:6788954-6788973 | MS.gene007204:intron | 35.0% | |
| CTCTCTTTAATCCCTTTACT+AGG | - | chr7.1:6788509-6788528 | MS.gene007204:CDS | 35.0% | |
| GAACCACCAAAAGACTTTAT+TGG | - | chr7.1:6789204-6789223 | MS.gene007204:CDS | 35.0% | |
| GTAAACAGAACAGAAACAGT+GGG | + | chr7.1:6787953-6787972 | None:intergenic | 35.0% | |
| GTCACTGGAATAATGAGAAA+CGG | - | chr7.1:6789051-6789070 | MS.gene007204:intron | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr7.1:6788959-6788978 | MS.gene007204:intron | 35.0% | |
| TCTTGGAATTGTTCTTGTCT+CGG | - | chr7.1:6788218-6788237 | MS.gene007204:CDS | 35.0% | |
| TGATATGTCCTGTCAAACTT+TGG | + | chr7.1:6788550-6788569 | None:intergenic | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr7.1:6788331-6788350 | None:intergenic | 35.0% | |
| ! | ATAACACATCCAGTTGATGT+TGG | + | chr7.1:6788595-6788614 | None:intergenic | 35.0% |
| ! | ATCCAGCCAATAAAGTCTTT+TGG | + | chr7.1:6789213-6789232 | None:intergenic | 35.0% |
| ! | ATGGTTGGTTATTGCTAAAC+CGG | - | chr7.1:6788449-6788468 | MS.gene007204:CDS | 35.0% |
| ! | GATAAACATATTTGGTGGGA+TGG | - | chr7.1:6787996-6788015 | MS.gene007204:CDS | 35.0% |
| ! | TGCAACGTTTTCCATAGAAA+CGG | + | chr7.1:6789095-6789114 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr7.1:6789086-6789105 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr7.1:6789087-6789106 | None:intergenic | 35.0% |
| !! | CGTGTTTGCTATACAAAAGA+TGG | - | chr7.1:6788430-6788449 | MS.gene007204:CDS | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr7.1:6788982-6789001 | MS.gene007204:intron | 40.0% | |
| AACAATTCCAAGACTTCAGC+AGG | + | chr7.1:6788211-6788230 | None:intergenic | 40.0% | |
| AACATTCTTCGCATGATGTC+GGG | - | chr7.1:6787579-6787598 | MS.gene007204:CDS | 40.0% | |
| ACAATTCCAAGACTTCAGCA+GGG | + | chr7.1:6788210-6788229 | None:intergenic | 40.0% | |
| AGAACTCTCTGCTAAGCATT+TGG | + | chr7.1:6788839-6788858 | None:intergenic | 40.0% | |
| AGAGTTCTACTGCCAAAAAC+TGG | - | chr7.1:6788851-6788870 | MS.gene007204:intron | 40.0% | |
| CAACATTCTTCGCATGATGT+CGG | - | chr7.1:6787578-6787597 | MS.gene007204:CDS | 40.0% | |
| CACCAAAAGACTTTATTGGC+TGG | - | chr7.1:6789208-6789227 | MS.gene007204:CDS | 40.0% | |
| CTATAAGCACGTGTTATCCT+GGG | - | chr7.1:6788650-6788669 | MS.gene007204:intron | 40.0% | |
| GAACTCTCTGCTAAGCATTT+GGG | + | chr7.1:6788838-6788857 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr7.1:6788966-6788985 | MS.gene007204:intron | 40.0% | |
| GACCACTGTTAATTATGACG+CGG | - | chr7.1:6788684-6788703 | MS.gene007204:intron | 40.0% | |
| GTGATCAGATCCCTAGTAAA+GGG | + | chr7.1:6788523-6788542 | None:intergenic | 40.0% | |
| GTTATCCTGGGGAAAAAGAA+TGG | - | chr7.1:6788662-6788681 | MS.gene007204:intron | 40.0% | |
| GTTGACTACACGTAAAGAAG+TGG | + | chr7.1:6788302-6788321 | None:intergenic | 40.0% | |
| TACCGCGTCATAATTAACAG+TGG | + | chr7.1:6788689-6788708 | None:intergenic | 40.0% | |
| TATAAGCACGTGTTATCCTG+GGG | - | chr7.1:6788651-6788670 | MS.gene007204:intron | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr7.1:6789081-6789100 | MS.gene007204:intron | 40.0% | |
| ! | ACAATTTGGAGCTGCAAACA+TGG | - | chr7.1:6788176-6788195 | MS.gene007204:CDS | 40.0% |
| ! | CAATTTGGAGCTGCAAACAT+GGG | - | chr7.1:6788177-6788196 | MS.gene007204:CDS | 40.0% |
| ! | CAGCCAATAAAGTCTTTTGG+TGG | + | chr7.1:6789210-6789229 | None:intergenic | 40.0% |
| ! | TTTTATTGTCTGAGCGACAG+AGG | - | chr7.1:6788754-6788773 | MS.gene007204:intron | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | + | chr7.1:6788381-6788400 | None:intergenic | 45.0% | |
| ACAGTCCAAGTACGTTCAAG+TGG | + | chr7.1:6788799-6788818 | None:intergenic | 45.0% | |
| ACATTCTTCGCATGATGTCG+GGG | - | chr7.1:6787580-6787599 | MS.gene007204:CDS | 45.0% | |
| ACTGCCAAAAACTGGTCGAA+GGG | - | chr7.1:6788859-6788878 | MS.gene007204:intron | 45.0% | |
| ATCCAACTCTGGCAACTCAA+GGG | + | chr7.1:6788404-6788423 | None:intergenic | 45.0% | |
| CAGTCCAAGTACGTTCAAGT+GGG | + | chr7.1:6788798-6788817 | None:intergenic | 45.0% | |
| CGTGATCAGATCCCTAGTAA+AGG | + | chr7.1:6788524-6788543 | None:intergenic | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.1:6788266-6788285 | MS.gene007204:CDS | 45.0% | |
| GCTATAAGCACGTGTTATCC+TGG | - | chr7.1:6788649-6788668 | MS.gene007204:intron | 45.0% | |
| GCTCACTGGGATGATATCTA+CGG | + | chr7.1:6789137-6789156 | None:intergenic | 45.0% | |
| GGAATTGTTCTTGTCTCGGT+TGG | - | chr7.1:6788222-6788241 | MS.gene007204:CDS | 45.0% | |
| GTGTAGTCAACCAATCACCT+TGG | - | chr7.1:6788311-6788330 | MS.gene007204:CDS | 45.0% | |
| TACTGCCAAAAACTGGTCGA+AGG | - | chr7.1:6788858-6788877 | MS.gene007204:intron | 45.0% | |
| TCTTGTCTCGGTTGGATGTT+GGG | - | chr7.1:6788230-6788249 | MS.gene007204:CDS | 45.0% | |
| TCTTGTGCTCCAACATCAAC+TGG | - | chr7.1:6788583-6788602 | MS.gene007204:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr7.1:6788581-6788600 | None:intergenic | 45.0% | |
| TTCTTGTCTCGGTTGGATGT+TGG | - | chr7.1:6788229-6788248 | MS.gene007204:CDS | 45.0% | |
| TTGACCCACTTGAACGTACT+TGG | - | chr7.1:6788791-6788810 | MS.gene007204:intron | 45.0% | |
| TTGGTTATTGCTAAACCGGC+AGG | - | chr7.1:6788453-6788472 | MS.gene007204:CDS | 45.0% | |
| ! | TTTCCCCTTCGACCAGTTTT+TGG | + | chr7.1:6788866-6788885 | None:intergenic | 45.0% |
| !! | CATTCTAGGACTTACGTCAC+TGG | - | chr7.1:6789036-6789055 | MS.gene007204:intron | 45.0% |
| ACACGACATCCATCCAACTC+TGG | + | chr7.1:6788415-6788434 | None:intergenic | 50.0% | |
| ATTGTCTGAGCGACAGAGGT+TGG | - | chr7.1:6788758-6788777 | MS.gene007204:intron | 50.0% | |
| CAAGACTTCAGCAGGGAGAT+CGG | + | chr7.1:6788203-6788222 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr7.1:6788144-6788163 | MS.gene007204:CDS | 50.0% | |
| CATCCAACTCTGGCAACTCA+AGG | + | chr7.1:6788405-6788424 | None:intergenic | 50.0% | |
| CTCTCTGCTAAGCATTTGGG+CGG | + | chr7.1:6788835-6788854 | None:intergenic | 50.0% | |
| CTCTGGCAACTCAAGGGAAT+AGG | + | chr7.1:6788398-6788417 | None:intergenic | 50.0% | |
| CTGCCAAAAACTGGTCGAAG+GGG | - | chr7.1:6788860-6788879 | MS.gene007204:intron | 50.0% | |
| CTTGTCTCGGTTGGATGTTG+GGG | - | chr7.1:6788231-6788250 | MS.gene007204:CDS | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr7.1:6788382-6788401 | None:intergenic | 50.0% | |
| TATTGCTAAACCGGCAGGAC+TGG | - | chr7.1:6788458-6788477 | MS.gene007204:CDS | 50.0% | |
| TCACGCTGCCAAAGTTTGAC+AGG | - | chr7.1:6788539-6788558 | MS.gene007204:CDS | 50.0% | |
| TTCGCATGATGTCGGGGAAA+AGG | - | chr7.1:6787586-6787605 | MS.gene007204:CDS | 50.0% | |
| ! | CTTGAGTTGCCAGAGTTGGA+TGG | - | chr7.1:6788403-6788422 | MS.gene007204:CDS | 50.0% |
| ! | GTGGTCCATTCTTTTTCCCC+AGG | + | chr7.1:6788670-6788689 | None:intergenic | 50.0% |
| ! | TTCCCTTGAGTTGCCAGAGT+TGG | - | chr7.1:6788399-6788418 | MS.gene007204:CDS | 50.0% |
| CAGTGAGCAGTGTCGTGACA+GGG | - | chr7.1:6789149-6789168 | MS.gene007204:intron | 55.0% | |
| CGATCTCCCTGCTGAAGTCT+TGG | - | chr7.1:6788201-6788220 | MS.gene007204:CDS | 55.0% | |
| CTGTCACGACACTGCTCACT+GGG | + | chr7.1:6789150-6789169 | None:intergenic | 55.0% | |
| TCTGCTAAGCATTTGGGCGG+AGG | + | chr7.1:6788832-6788851 | None:intergenic | 55.0% | |
| ! | TGAGCGACAGAGGTTGGCTA+GGG | - | chr7.1:6788764-6788783 | MS.gene007204:intron | 55.0% |
| CCAGTGAGCAGTGTCGTGAC+AGG | - | chr7.1:6789148-6789167 | MS.gene007204:intron | 60.0% | |
| CCTGTCACGACACTGCTCAC+TGG | + | chr7.1:6789151-6789170 | None:intergenic | 60.0% | |
| TGCTAAACCGGCAGGACTGG+CGG | - | chr7.1:6788461-6788480 | MS.gene007204:CDS | 60.0% | |
| ! | CTGAGCGACAGAGGTTGGCT+AGG | - | chr7.1:6788763-6788782 | MS.gene007204:intron | 60.0% |
| ! | GAGCGACAGAGGTTGGCTAG+GGG | - | chr7.1:6788765-6788784 | MS.gene007204:intron | 60.0% |
| ! | CAGGACTGGCGGAGGTTGGA+CGG | - | chr7.1:6788472-6788491 | MS.gene007204:CDS | 65.0% |
| ! | TAAACCGGCAGGACTGGCGG+AGG | - | chr7.1:6788464-6788483 | MS.gene007204:CDS | 65.0% |
| CCAACCTCCGCCAGTCCTGC+CGG | + | chr7.1:6788471-6788490 | None:intergenic | 70.0% | |
| ! | CCGGCAGGACTGGCGGAGGT+TGG | - | chr7.1:6788468-6788487 | MS.gene007204:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6787561 | 6789236 | 6787561 | ID=MS.gene007204 |
| chr7.1 | mRNA | 6787561 | 6789236 | 6787561 | ID=MS.gene007204.t1;Parent=MS.gene007204 |
| chr7.1 | exon | 6789169 | 6789236 | 6789169 | ID=MS.gene007204.t1.exon1;Parent=MS.gene007204.t1 |
| chr7.1 | CDS | 6789169 | 6789236 | 6789169 | ID=cds.MS.gene007204.t1;Parent=MS.gene007204.t1 |
| chr7.1 | exon | 6787561 | 6788662 | 6787561 | ID=MS.gene007204.t1.exon2;Parent=MS.gene007204.t1 |
| chr7.1 | CDS | 6787561 | 6788662 | 6787561 | ID=cds.MS.gene007204.t1;Parent=MS.gene007204.t1 |
| Gene Sequence |
| Protein sequence |
