AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03004

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03004.t1 MTR_3g045700 65.651 361 101 10 37 388 2 348 9.05e-146 418
MS.gene03004.t1 MTR_7g083950 63.260 362 107 11 33 384 81 426 2.38e-137 399
MS.gene03004.t1 MTR_3g006010 55.065 385 145 9 15 384 92 463 8.34e-130 382
MS.gene03004.t1 MTR_3g006120 57.584 356 128 8 39 384 4 346 1.71e-127 371
MS.gene03004.t1 MTR_4g133490 61.064 357 122 7 39 389 2 347 3.53e-127 370
MS.gene03004.t1 MTR_3g006100 55.833 360 136 8 39 388 4 350 5.66e-124 362
MS.gene03004.t1 MTR_3g006140 55.249 362 139 8 33 384 20 368 1.67e-119 352
MS.gene03004.t1 MTR_3g006180 56.358 346 128 8 49 384 1 333 1.29e-118 348
MS.gene03004.t1 MTR_1g100280 56.604 371 108 11 31 388 5 335 1.62e-112 333
MS.gene03004.t1 MTR_6g091830 52.267 375 143 10 29 384 92 449 5.14e-110 330
MS.gene03004.t1 MTR_6g092140 52.255 377 140 11 29 384 92 449 5.66e-110 330
MS.gene03004.t1 MTR_3g068220 52.174 368 146 8 37 388 2 355 2.69e-109 325
MS.gene03004.t1 MTR_7g070100 52.514 358 147 6 40 388 5 348 1.18e-105 316
MS.gene03004.t1 MTR_1g109340 66.667 255 70 5 134 384 106 349 2.23e-104 313
MS.gene03004.t1 MTR_1g109340 76.190 42 10 0 33 74 65 106 1.03e-13 72.4
MS.gene03004.t1 MTR_4g133320 59.119 318 114 7 76 389 2 307 4.01e-103 308
MS.gene03004.t1 MTR_1g089085 84.091 176 26 2 1 175 1 175 4.35e-101 298
MS.gene03004.t1 MTR_6g088340 45.699 372 140 11 29 384 102 427 2.05e-84 264
MS.gene03004.t1 MTR_3g085910 47.006 334 102 10 38 356 2 275 1.41e-81 251
MS.gene03004.t1 MTR_3g086480 49.630 270 111 10 120 382 2 253 8.91e-71 223
MS.gene03004.t1 MTR_6g011110 47.535 284 118 9 120 388 8 275 1.64e-66 213
MS.gene03004.t1 MTR_1g109520 67.722 158 42 3 239 388 19 175 3.57e-62 198
MS.gene03004.t1 MTR_1g089620 80.172 116 21 1 221 336 35 148 5.31e-56 186
MS.gene03004.t1 MTR_1g012330 64.085 142 40 3 121 261 9 140 1.63e-46 160
MS.gene03004.t1 MTR_1g109090 58.394 137 47 4 33 162 10 143 1.07e-38 136
MS.gene03004.t1 MTR_6g023220 30.383 339 213 10 43 375 17 338 2.75e-32 125
MS.gene03004.t1 MTR_1g106050 51.880 133 52 4 39 159 2 134 2.92e-31 116
MS.gene03004.t1 MTR_1g093300 62.245 98 36 1 217 313 1 98 9.11e-29 109
MS.gene03004.t1 MTR_6g091850 40.625 96 47 2 298 384 1 95 3.28e-16 74.3
MS.gene03004.t1 MTR_0128s0040 37.063 143 76 5 68 207 3 134 1.47e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTATCCTTCTTGTAAA+TGG 0.121650 1.3:-62592222 None:intergenic
AGGGAGGGTTGTTGACTTTA+TGG 0.190335 1.3:+62592452 MS.gene03004:CDS
GAAGAAGTTAATCTGAAAAT+TGG 0.285343 1.3:+62591347 MS.gene03004:CDS
CTCTCATATCCCCACCTATT+AGG 0.287718 1.3:-62592765 None:intergenic
GAAATCAGGAATAACTTTAA+AGG 0.296335 1.3:-62592262 None:intergenic
AACCATGCCTTGCTTGCTTT+TGG 0.299066 1.3:+62592291 MS.gene03004:CDS
TGCTCTGAAGAGCTTGCTTT+TGG 0.310229 1.3:+62592318 MS.gene03004:CDS
TGCTTTCATTCAAAAGTTCT+AGG 0.313603 1.3:+62592367 MS.gene03004:CDS
CAGTTCCCTGCTACCTTCTT+CGG 0.314758 1.3:-62591898 None:intergenic
ATCGTCAAAATCTAATGTTC+TGG 0.346746 1.3:-62591953 None:intergenic
TCTCATATCCCCACCTATTA+GGG 0.348829 1.3:-62592764 None:intergenic
TTGCTCGGGCAAGCTAATAA+AGG 0.353877 1.3:-62592091 None:intergenic
ACGCATTGAGCAGCCCTAAT+AGG 0.355889 1.3:+62592751 MS.gene03004:CDS
AGGAATAACTTTAAAGGTAG+AGG 0.358655 1.3:-62592256 None:intergenic
CCCAACCACGATTTCGAGAT+TGG 0.358983 1.3:-62592404 None:intergenic
TATTCGACAATGGGAAATCT+AGG 0.371636 1.3:+62592432 MS.gene03004:CDS
CAGGGAACTGTGAACTTCCT+TGG 0.384192 1.3:+62591911 MS.gene03004:CDS
CATCACATTTAACCAATCTA+AGG 0.388215 1.3:-62592593 None:intergenic
AACTTCCTTGTACCTTAGAT+TGG 0.389573 1.3:+62592581 MS.gene03004:CDS
TTATGTCAAACTGGAAACTT+TGG 0.395167 1.3:+62592689 MS.gene03004:CDS
AACCATGAGTTATGTCAAAC+TGG 0.399495 1.3:+62592680 MS.gene03004:CDS
TTCAAGTTTCGTATAATTGT+GGG 0.405445 1.3:+62592058 MS.gene03004:CDS
TAAATGTGATGAGCAACTTT+TGG 0.414840 1.3:+62592605 MS.gene03004:CDS
TTGAAGATGATGAACTTAAA+CGG 0.417802 1.3:+62592126 MS.gene03004:CDS
TTGCATTTGTGTGCAAGAAT+TGG 0.420367 1.3:+62591986 MS.gene03004:CDS
CTTCAAGTTTCGTATAATTG+TGG 0.428550 1.3:+62592057 MS.gene03004:CDS
TGGGTTGCTTATTCGACAAT+GGG 0.442542 1.3:+62592423 MS.gene03004:CDS
AAGAAAGAAACTCTGCCTCT+TGG 0.445095 1.3:+62593260 MS.gene03004:CDS
TATGTCAAACTGGAAACTTT+GGG 0.457586 1.3:+62592690 MS.gene03004:CDS
AGGGAACTGTGAACTTCCTT+GGG 0.485932 1.3:+62591912 MS.gene03004:CDS
ATTTATCGTGCAATAAAATG+AGG 0.486319 1.3:+62592634 MS.gene03004:CDS
GCATGGTTATGAAAGAAATC+AGG 0.489223 1.3:-62592276 None:intergenic
AAGGTACAAGGAAGTTATGT+CGG 0.506294 1.3:-62592574 None:intergenic
CCAATCTCGAAATCGTGGTT+GGG 0.515821 1.3:+62592404 MS.gene03004:CDS
ATTACGCTTCCGGCTCGTCA+TGG 0.522011 1.3:+62592870 MS.gene03004:CDS
CATTTGTGTGCAAGAATTGG+AGG 0.525993 1.3:+62591989 MS.gene03004:CDS
ACCAATCTCGAAATCGTGGT+TGG 0.527975 1.3:+62592403 MS.gene03004:CDS
TCACTGACAAGGCCAACATA+GGG 0.530818 1.3:+62592499 MS.gene03004:CDS
ATGCTCTGAAGAATTTGTCT+TGG 0.531564 1.3:+62592344 MS.gene03004:CDS
TTCCAGTTTGACATAACTCA+TGG 0.536068 1.3:-62592682 None:intergenic
AGGTACAAGGAAGTTATGTC+GGG 0.536711 1.3:-62592573 None:intergenic
TTGGGTTGCTTATTCGACAA+TGG 0.538481 1.3:+62592422 MS.gene03004:CDS
GTCACTGACAAGGCCAACAT+AGG 0.554026 1.3:+62592498 MS.gene03004:CDS
ATAACTTTAAAGGTAGAGGG+AGG 0.555967 1.3:-62592252 None:intergenic
TAATCAATCCATTTACAAGA+AGG 0.565455 1.3:+62592214 MS.gene03004:CDS
TGCCAAAAGCAAGCAAGGCA+TGG 0.566463 1.3:-62592293 None:intergenic
GGAATAACTTTAAAGGTAGA+GGG 0.567217 1.3:-62592255 None:intergenic
CAAGCTGAGTACCCCTATGT+TGG 0.568839 1.3:-62592511 None:intergenic
GCATTTGCCAAAAGCAAGCA+AGG 0.573799 1.3:-62592298 None:intergenic
GAAAATGTTCCATGACGAGC+CGG 0.576331 1.3:-62592879 None:intergenic
TGTAGTGTGTATTCAAAGGA+TGG 0.576802 1.3:+62592828 MS.gene03004:CDS
TACGAAACTTGAAGAAGTAA+CGG 0.583044 1.3:-62592048 None:intergenic
ATTGAGCAGCCCTAATAGGT+GGG 0.585633 1.3:+62592755 MS.gene03004:CDS
ATTTACAAGAAGGATAAAGA+AGG 0.589540 1.3:+62592224 MS.gene03004:CDS
CTGAAAATTGGATACAATCG+TGG 0.591043 1.3:+62591359 MS.gene03004:CDS
ACAATGTAGTGTGTATTCAA+AGG 0.591784 1.3:+62592824 MS.gene03004:CDS
GTCTACCAATCTCGAAATCG+TGG 0.606963 1.3:+62592399 MS.gene03004:CDS
ATTCGACAATGGGAAATCTA+GGG 0.607332 1.3:+62592433 MS.gene03004:CDS
TCAAGTTTCGTATAATTGTG+GGG 0.609736 1.3:+62592059 MS.gene03004:CDS
CATTGAGCAGCCCTAATAGG+TGG 0.612126 1.3:+62592754 MS.gene03004:CDS
TTTAACCAATCTAAGGTACA+AGG 0.613262 1.3:-62592586 None:intergenic
TAACTTTAAAGGTAGAGGGA+GGG 0.616439 1.3:-62592251 None:intergenic
ATGATATCAAGCACGTCCCA+AGG 0.620641 1.3:-62591928 None:intergenic
CGACAATGGGAAATCTAGGG+AGG 0.621126 1.3:+62592436 MS.gene03004:CDS
AAAAGCCGAAGAAGGTAGCA+GGG 0.634398 1.3:+62591893 MS.gene03004:CDS
GTCTATGTTACGTCTTCTAG+CGG 0.634597 1.3:+62592153 MS.gene03004:CDS
GACAATGGGAAATCTAGGGA+GGG 0.641166 1.3:+62592437 MS.gene03004:CDS
ATTTGTGTGCAAGAATTGGA+GGG 0.645497 1.3:+62591990 MS.gene03004:CDS
ATCCAAACTCAAAATCCAAG+AGG 0.654429 1.3:-62593275 None:intergenic
CACTGACAAGGCCAACATAG+GGG 0.657764 1.3:+62592500 MS.gene03004:CDS
TCTAAAACACCAATCCAACA+TGG 0.666879 1.3:-62592904 None:intergenic
AATATATGTTGTCACTGACA+AGG 0.670333 1.3:+62592488 MS.gene03004:CDS
TTGAGCAGCCCTAATAGGTG+GGG 0.685214 1.3:+62592756 MS.gene03004:CDS
TAGTAATTCAGCTAACAATG+TGG 0.723612 1.3:+62591292 MS.gene03004:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAACAAACTACAAA+TGG - chr1.3:62593106-62593125 None:intergenic 15.0%
!! ATTTGTTTAATACATGATAT+TGG + chr1.3:62591483-62591502 MS.gene03004:intron 15.0%
!! TATACTTAATATTGTAATGA+CGG - chr1.3:62591700-62591719 None:intergenic 15.0%
!!! ATATTTTTCACTATTGTATA+TGG + chr1.3:62591390-62591409 MS.gene03004:intron 15.0%
!!! ATTTGTAGTTTGTTTATTTT+TGG + chr1.3:62593105-62593124 MS.gene03004:intron 15.0%
!!! TGTTTTATAGTTTCAATATT+AGG + chr1.3:62593020-62593039 MS.gene03004:intron 15.0%
!!! AACATTGCATTATTTTATGT+TGG + chr1.3:62592714-62592733 MS.gene03004:CDS 20.0%
!!! ACATGTTTCTTTAGTTATTT+TGG - chr1.3:62591844-62591863 None:intergenic 20.0%
!!! ACATTGCATTATTTTATGTT+GGG + chr1.3:62592715-62592734 MS.gene03004:CDS 20.0%
!!! CATGTTTCTTTAGTTATTTT+GGG - chr1.3:62591843-62591862 None:intergenic 20.0%
!!! TTTTGGTGTTTTTACTTTTA+CGG + chr1.3:62593122-62593141 MS.gene03004:intron 20.0%
! AAAGTGAAGATAGGAAAATA+GGG + chr1.3:62591745-62591764 MS.gene03004:intron 25.0%
! AACTCGTAAATATTAATGAC+CGG - chr1.3:62591648-62591667 None:intergenic 25.0%
! ATTTACAAGAAGGATAAAGA+AGG + chr1.3:62592224-62592243 MS.gene03004:CDS 25.0%
! ATTTATCGTGCAATAAAATG+AGG + chr1.3:62592634-62592653 MS.gene03004:CDS 25.0%
! GAAATCAGGAATAACTTTAA+AGG - chr1.3:62592265-62592284 None:intergenic 25.0%
! GAAGAAGTTAATCTGAAAAT+TGG + chr1.3:62591347-62591366 MS.gene03004:CDS 25.0%
! TAATCAATCCATTTACAAGA+AGG + chr1.3:62592214-62592233 MS.gene03004:CDS 25.0%
! TTCTTTATCCTTCTTGTAAA+TGG - chr1.3:62592225-62592244 None:intergenic 25.0%
! TTGAAGATGATGAACTTAAA+CGG + chr1.3:62592126-62592145 MS.gene03004:CDS 25.0%
!! AAGAAATAAATCTTTTGCTC+GGG - chr1.3:62592108-62592127 None:intergenic 25.0%
!! CAAGAAATAAATCTTTTGCT+CGG - chr1.3:62592109-62592128 None:intergenic 25.0%
!! TGTTTGATACTAGTGAATTT+TGG + chr1.3:62591548-62591567 MS.gene03004:intron 25.0%
!! TTCAAGTTTCGTATAATTGT+GGG + chr1.3:62592058-62592077 MS.gene03004:CDS 25.0%
!! TTTTAGACATCTACAATATG+AGG + chr1.3:62592920-62592939 MS.gene03004:CDS 25.0%
!! TTTTATTGTTGTGATCTGAA+GGG + chr1.3:62591869-62591888 MS.gene03004:intron 25.0%
AATATATGTTGTCACTGACA+AGG + chr1.3:62592488-62592507 MS.gene03004:CDS 30.0%
ACAATGTAGTGTGTATTCAA+AGG + chr1.3:62592824-62592843 MS.gene03004:CDS 30.0%
ATCGTCAAAATCTAATGTTC+TGG - chr1.3:62591956-62591975 None:intergenic 30.0%
CAAAGTGAAGATAGGAAAAT+AGG + chr1.3:62591744-62591763 MS.gene03004:intron 30.0%
CATCACATTTAACCAATCTA+AGG - chr1.3:62592596-62592615 None:intergenic 30.0%
GGTCATTAATATTTACGAGT+TGG + chr1.3:62591647-62591666 MS.gene03004:intron 30.0%
TACGAAACTTGAAGAAGTAA+CGG - chr1.3:62592051-62592070 None:intergenic 30.0%
TAGTAATTCAGCTAACAATG+TGG + chr1.3:62591292-62591311 MS.gene03004:CDS 30.0%
TATGTCAAACTGGAAACTTT+GGG + chr1.3:62592690-62592709 MS.gene03004:CDS 30.0%
TCAAGTTTCGTATAATTGTG+GGG + chr1.3:62592059-62592078 MS.gene03004:CDS 30.0%
TGCTTTCATTCAAAAGTTCT+AGG + chr1.3:62592367-62592386 MS.gene03004:CDS 30.0%
TTATGTCAAACTGGAAACTT+TGG + chr1.3:62592689-62592708 MS.gene03004:CDS 30.0%
! AGGAATAACTTTAAAGGTAG+AGG - chr1.3:62592259-62592278 None:intergenic 30.0%
! CAAACAATAGTACTTTTGCA+CGG - chr1.3:62591534-62591553 None:intergenic 30.0%
! CTTCAAGTTTCGTATAATTG+TGG + chr1.3:62592057-62592076 MS.gene03004:CDS 30.0%
! GACATTTTTCTAATCATTCC+AGG + chr1.3:62593236-62593255 MS.gene03004:intron 30.0%
! GGAATAACTTTAAAGGTAGA+GGG - chr1.3:62592258-62592277 None:intergenic 30.0%
! TAAATGTGATGAGCAACTTT+TGG + chr1.3:62592605-62592624 MS.gene03004:CDS 30.0%
! TACATGATATTGGTGAGTTT+TGG + chr1.3:62591493-62591512 MS.gene03004:intron 30.0%
! TCTTCAATCATACGATTTTG+TGG - chr1.3:62591320-62591339 None:intergenic 30.0%
! TTTAACCAATCTAAGGTACA+AGG - chr1.3:62592589-62592608 None:intergenic 30.0%
!! GTTTTATTGTTGTGATCTGA+AGG + chr1.3:62591868-62591887 MS.gene03004:intron 30.0%
!! TAGATTTTGACGATCTCTTT+CGG + chr1.3:62591962-62591981 MS.gene03004:CDS 30.0%
!! TTCTAGCGGATATTTTATCA+TGG + chr1.3:62592167-62592186 MS.gene03004:CDS 30.0%
!!! ATGGTTGATGAGTTTTGAAT+AGG + chr1.3:62591409-62591428 MS.gene03004:intron 30.0%
!!! TTGGATTTTGAGTTTGGATT+AGG + chr1.3:62593279-62593298 MS.gene03004:CDS 30.0%
AACCATGAGTTATGTCAAAC+TGG + chr1.3:62592680-62592699 MS.gene03004:CDS 35.0%
AACTTCCTTGTACCTTAGAT+TGG + chr1.3:62592581-62592600 MS.gene03004:CDS 35.0%
AAGGTACAAGGAAGTTATGT+CGG - chr1.3:62592577-62592596 None:intergenic 35.0%
AATTGGATACAATCGTGGTA+AGG + chr1.3:62591364-62591383 MS.gene03004:intron 35.0%
AGATGTGTATCAGAACTGAA+TGG + chr1.3:62593075-62593094 MS.gene03004:intron 35.0%
AGCACATACAAAGTGAAGAT+AGG + chr1.3:62591736-62591755 MS.gene03004:intron 35.0%
ATCCAAACTCAAAATCCAAG+AGG - chr1.3:62593278-62593297 None:intergenic 35.0%
ATTCGACAATGGGAAATCTA+GGG + chr1.3:62592433-62592452 MS.gene03004:CDS 35.0%
ATTTGTGTGCAAGAATTGGA+GGG + chr1.3:62591990-62592009 MS.gene03004:CDS 35.0%
CAGCTGTCTAGTATTAGAAA+TGG + chr1.3:62593204-62593223 MS.gene03004:intron 35.0%
CTGAAAATTGGATACAATCG+TGG + chr1.3:62591359-62591378 MS.gene03004:CDS 35.0%
GATGTGTATCAGAACTGAAT+GGG + chr1.3:62593076-62593095 MS.gene03004:intron 35.0%
GCAAAAATGTATTACGCTTC+CGG + chr1.3:62592860-62592879 MS.gene03004:CDS 35.0%
GCATGGTTATGAAAGAAATC+AGG - chr1.3:62592279-62592298 None:intergenic 35.0%
TATTCGACAATGGGAAATCT+AGG + chr1.3:62592432-62592451 MS.gene03004:CDS 35.0%
TGTAGTGTGTATTCAAAGGA+TGG + chr1.3:62592828-62592847 MS.gene03004:CDS 35.0%
TTCCAGTTTGACATAACTCA+TGG - chr1.3:62592685-62592704 None:intergenic 35.0%
TTGCAAAAGTTTATGTCGAC+CGG + chr1.3:62591626-62591645 MS.gene03004:intron 35.0%
TTGCATTTGTGTGCAAGAAT+TGG + chr1.3:62591986-62592005 MS.gene03004:CDS 35.0%
! ATAACTTTAAAGGTAGAGGG+AGG - chr1.3:62592255-62592274 None:intergenic 35.0%
! CATTTTCTACCATGTTGGAT+TGG + chr1.3:62592895-62592914 MS.gene03004:CDS 35.0%
! TAACTTTAAAGGTAGAGGGA+GGG - chr1.3:62592254-62592273 None:intergenic 35.0%
! TCTAAAACACCAATCCAACA+TGG - chr1.3:62592907-62592926 None:intergenic 35.0%
! TGGAACATTTTCTACCATGT+TGG + chr1.3:62592890-62592909 MS.gene03004:CDS 35.0%
!! ATGCTCTGAAGAATTTGTCT+TGG + chr1.3:62592344-62592363 MS.gene03004:CDS 35.0%
AAGAAAGAAACTCTGCCTCT+TGG + chr1.3:62593260-62593279 MS.gene03004:CDS 40.0%
AGGTACAAGGAAGTTATGTC+GGG - chr1.3:62592576-62592595 None:intergenic 40.0%
CATTTGTGTGCAAGAATTGG+AGG + chr1.3:62591989-62592008 MS.gene03004:CDS 40.0%
GTCTATGTTACGTCTTCTAG+CGG + chr1.3:62592153-62592172 MS.gene03004:CDS 40.0%
GTTACTTGTCGTCTTTGTGT+AGG + chr1.3:62592985-62593004 MS.gene03004:intron 40.0%
TCTCATATCCCCACCTATTA+GGG - chr1.3:62592767-62592786 None:intergenic 40.0%
TGGGTTGCTTATTCGACAAT+GGG + chr1.3:62592423-62592442 MS.gene03004:CDS 40.0%
TGTATCAGAACTGAATGGGT+TGG + chr1.3:62593080-62593099 MS.gene03004:intron 40.0%
! AGCGGATATTTTATCATGGC+AGG + chr1.3:62592171-62592190 MS.gene03004:CDS 40.0%
! ATGTGATGAGCAACTTTTGG+TGG + chr1.3:62592608-62592627 MS.gene03004:CDS 40.0%
! TGTATGTGTCTGCTGAGTTT+TGG + chr1.3:62591598-62591617 MS.gene03004:intron 40.0%
! TTGGGTTGCTTATTCGACAA+TGG + chr1.3:62592422-62592441 MS.gene03004:CDS 40.0%
! TTTGAAGCTAGTAGCAGTAG+AGG + chr1.3:62593171-62593190 MS.gene03004:intron 40.0%
!!! GAGTTTTGAATAGGACTCTC+TGG + chr1.3:62591418-62591437 MS.gene03004:intron 40.0%
!!! TGCCTCTTGGATTTTGAGTT+TGG + chr1.3:62593273-62593292 MS.gene03004:CDS 40.0%
AAAAAGCCGAAGAAGGTAGC+AGG + chr1.3:62591892-62591911 MS.gene03004:CDS 45.0%
AAAAGCCGAAGAAGGTAGCA+GGG + chr1.3:62591893-62591912 MS.gene03004:CDS 45.0%
ACCAATCTCGAAATCGTGGT+TGG + chr1.3:62592403-62592422 MS.gene03004:CDS 45.0%
AGGGAACTGTGAACTTCCTT+GGG + chr1.3:62591912-62591931 MS.gene03004:CDS 45.0%
ATGATATCAAGCACGTCCCA+AGG - chr1.3:62591931-62591950 None:intergenic 45.0%
ATTGAGCAGCCCTAATAGGT+GGG + chr1.3:62592755-62592774 MS.gene03004:CDS 45.0%
CACAAAGACGACAAGTAACG+TGG - chr1.3:62592984-62593003 None:intergenic 45.0%
CCAATCTCGAAATCGTGGTT+GGG + chr1.3:62592404-62592423 MS.gene03004:CDS 45.0%
CTCTCATATCCCCACCTATT+AGG - chr1.3:62592768-62592787 None:intergenic 45.0%
GAAAATGTTCCATGACGAGC+CGG - chr1.3:62592882-62592901 None:intergenic 45.0%
GACAATGGGAAATCTAGGGA+GGG + chr1.3:62592437-62592456 MS.gene03004:CDS 45.0%
GCATTTGCCAAAAGCAAGCA+AGG - chr1.3:62592301-62592320 None:intergenic 45.0%
GGCAGAGTTTCTTTCTTACC+TGG - chr1.3:62593257-62593276 None:intergenic 45.0%
GTCTACCAATCTCGAAATCG+TGG + chr1.3:62592399-62592418 MS.gene03004:CDS 45.0%
TCACTGACAAGGCCAACATA+GGG + chr1.3:62592499-62592518 MS.gene03004:CDS 45.0%
TGAAGGGAAAAAGCCGAAGA+AGG + chr1.3:62591885-62591904 MS.gene03004:intron 45.0%
TTGCTCGGGCAAGCTAATAA+AGG - chr1.3:62592094-62592113 None:intergenic 45.0%
! AACCATGCCTTGCTTGCTTT+TGG + chr1.3:62592291-62592310 MS.gene03004:CDS 45.0%
! AGAATTGGAGGGCTTTTCAC+TGG + chr1.3:62592001-62592020 MS.gene03004:CDS 45.0%
!! AGGGAGGGTTGTTGACTTTA+TGG + chr1.3:62592452-62592471 MS.gene03004:CDS 45.0%
!!! TGCTCTGAAGAGCTTGCTTT+TGG + chr1.3:62592318-62592337 MS.gene03004:CDS 45.0%
ACGCATTGAGCAGCCCTAAT+AGG + chr1.3:62592751-62592770 MS.gene03004:CDS 50.0%
CAAGCTGAGTACCCCTATGT+TGG - chr1.3:62592514-62592533 None:intergenic 50.0%
CACTGACAAGGCCAACATAG+GGG + chr1.3:62592500-62592519 MS.gene03004:CDS 50.0%
CAGGGAACTGTGAACTTCCT+TGG + chr1.3:62591911-62591930 MS.gene03004:CDS 50.0%
CAGTTCCCTGCTACCTTCTT+CGG - chr1.3:62591901-62591920 None:intergenic 50.0%
CATTGAGCAGCCCTAATAGG+TGG + chr1.3:62592754-62592773 MS.gene03004:CDS 50.0%
CCCAACCACGATTTCGAGAT+TGG - chr1.3:62592407-62592426 None:intergenic 50.0%
CGACAATGGGAAATCTAGGG+AGG + chr1.3:62592436-62592455 MS.gene03004:CDS 50.0%
GAAGCTAGTAGCAGTAGAGG+CGG + chr1.3:62593174-62593193 MS.gene03004:intron 50.0%
GTCACTGACAAGGCCAACAT+AGG + chr1.3:62592498-62592517 MS.gene03004:CDS 50.0%
TGCCAAAAGCAAGCAAGGCA+TGG - chr1.3:62592296-62592315 None:intergenic 50.0%
TTGAGCAGCCCTAATAGGTG+GGG + chr1.3:62592756-62592775 MS.gene03004:CDS 50.0%
! ATTACGCTTCCGGCTCGTCA+TGG + chr1.3:62592870-62592889 MS.gene03004:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 62591284 62593317 62591284 ID=MS.gene03004
chr1.3 mRNA 62591284 62593317 62591284 ID=MS.gene03004.t1;Parent=MS.gene03004
chr1.3 exon 62591284 62591380 62591284 ID=MS.gene03004.t1.exon1;Parent=MS.gene03004.t1
chr1.3 CDS 62591284 62591380 62591284 ID=cds.MS.gene03004.t1;Parent=MS.gene03004.t1
chr1.3 exon 62591890 62592941 62591890 ID=MS.gene03004.t1.exon2;Parent=MS.gene03004.t1
chr1.3 CDS 62591890 62592941 62591890 ID=cds.MS.gene03004.t1;Parent=MS.gene03004.t1
chr1.3 exon 62593258 62593317 62593258 ID=MS.gene03004.t1.exon3;Parent=MS.gene03004.t1
chr1.3 CDS 62593258 62593317 62593258 ID=cds.MS.gene03004.t1;Parent=MS.gene03004.t1
Gene Sequence

>MS.gene03004

ATGGCAAATAGTAATTCAGCTAACAATGTGGTACCACAAAATCGTATGATTGAAGAGCAGTCTGAAGAAGTTAATCTGAAAATTGGATACAATCGTGGTAAGGTTTATATTTTTCACTATTGTATATGGTTGATGAGTTTTGAATAGGACTCTCTGGTTCTCAATTTGTTATGTTTTAGCTGCAGCTGTGTAAGATACTATTTGTTTAATACATGATATTGGTGAGTTTTGGTGATACAAGTTTTATCCGTGCAAAAGTACTATTGTTTGATACTAGTGAATTTTGGTGTTACAAATTTTATATTTTTCACTGCTGTATGTGTCTGCTGAGTTTTGGTATTATTGCAAAAGTTTATGTCGACCGGTCATTAATATTTACGAGTTGGAGATGTTTCATACATAAATACTTGTCACCGTCATTACAATATTAAGTATATATTAGAAGAGATTTTAGCACATACAAAGTGAAGATAGGAAAATAGGGTAATAAATAACTAAAAAATAAAATATCAAATAAACATGATATTATCAAATAAACAATAAAATATCTTATGTTCCCAAAATAACTAAAGAAACATGTTTATGTTTTATTGTTGTGATCTGAAGGGAAAAAGCCGAAGAAGGTAGCAGGGAACTGTGAACTTCCTTGGGACGTGCTTGATATCATCTCCAGAACATTAGATTTTGACGATCTCTTTCGGTTTGCATTTGTGTGCAAGAATTGGAGGGCTTTTCACTGGAGAAATTTTCTTGTATCGCAAGAACCGTTACTTCTTCAAGTTTCGTATAATTGTGGGGCATCATATTCCTTTATTAGCTTGCCCGAGCAAAAGATTTATTTCTTGAAGATGATGAACTTAAACGGCTATGTCTATGTTACGTCTTCTAGCGGATATTTTATCATGGCAGGATTTAATAATTCGTTTCTAGTAATCAATCCATTTACAAGAAGGATAAAGAAGGTAATCCCTCCCTCTACCTTTAAAGTTATTCCTGATTTCTTTCATAACCATGCCTTGCTTGCTTTTGGCAAATGCTCTGAAGAGCTTGCTTTTGGCAAATGCTCTGAAGAATTTGTCTTGGTGCTTTCATTCAAAAGTTCTAGGAGATTGCATGTCTACCAATCTCGAAATCGTGGTTGGGTTGCTTATTCGACAATGGGAAATCTAGGGAGGGTTGTTGACTTTATGGTTTTGCATAATATAATATATGTTGTCACTGACAAGGCCAACATAGGGGTACTCAGCTTGAATTCTGCAGATATTAAATTTCTAAAACTGAAGAGTATTCCCGACATAACTTCCTTGTACCTTAGATTGGTTAAATGTGATGAGCAACTTTTGGTGGTTGATTTATCGTGCAATAAAATGAGGAATGTATACAAGATAGACTTCTCAACCATGAGTTATGTCAAACTGGAAACTTTGGGCAACATTGCATTATTTTATGTTGGGAAGAGAAACTGTTACGCATTGAGCAGCCCTAATAGGTGGGGATATGAGAGCAACTCTGTGTATGTCATCAATCTTTCAAGATATACACAATGTAGTGTGTATTCAAAGGATGGTAAAAAACTGCAAAAATGTATTACGCTTCCGGCTCGTCATGGAACATTTTCTACCATGTTGGATTGGTGTTTTAGACATCTACAATATGAGGTAGATTACTCTCTAGTTGAGTAACTTGCATAATGTACACCACGTTACTTGTCGTCTTTGTGTAGGAAAAACTTGCAATGTTTTATAGTTTCAATATTAGGAAAGTATTGAGATTGAAGAAAGAATTGAATTCAGATGTGTATCAGAACTGAATGGGTTGGCCATTTGTAGTTTGTTTATTTTTGGTGTTTTTACTTTTACGGATAAAAATATATAAAAAATGTAAAATTTTGAAGCTAGTAGCAGTAGAGGCGGCTCTGCTCAGCTGTCTAGTATTAGAAATGGAAATTGAACGACATTTTTCTAATCATTCCAGGTAAGAAAGAAACTCTGCCTCTTGGATTTTGAGTTTGGATTAGGATCAGTGACAGCATGA
Protein sequence

>MS.gene03004.t1

MANSNSANNVVPQNRMIEEQSEEVNLKIGYNRGKKPKKVAGNCELPWDVLDIISRTLDFDDLFRFAFVCKNWRAFHWRNFLVSQEPLLLQVSYNCGASYSFISLPEQKIYFLKMMNLNGYVYVTSSSGYFIMAGFNNSFLVINPFTRRIKKVIPPSTFKVIPDFFHNHALLAFGKCSEELAFGKCSEEFVLVLSFKSSRRLHVYQSRNRGWVAYSTMGNLGRVVDFMVLHNIIYVVTDKANIGVLSLNSADIKFLKLKSIPDITSLYLRLVKCDEQLLVVDLSCNKMRNVYKIDFSTMSYVKLETLGNIALFYVGKRNCYALSSPNRWGYESNSVYVINLSRYTQCSVYSKDGKKLQKCITLPARHGTFSTMLDWCFRHLQYEVRKKLCLLDFEFGLGSVTA