AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75065

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75065.t1 MTR_6g091830 86.623 456 54 4 1 450 1 455 0.0 808
MS.gene75065.t1 MTR_6g092140 86.184 456 56 4 1 450 1 455 0.0 804
MS.gene75065.t1 MTR_6g088340 74.624 465 71 4 1 450 1 433 0.0 687
MS.gene75065.t1 MTR_3g068220 67.514 354 114 1 96 448 2 355 4.30e-171 484
MS.gene75065.t1 MTR_3g006140 57.766 367 143 4 87 449 15 373 2.41e-142 412
MS.gene75065.t1 MTR_3g006010 46.122 477 209 10 6 450 9 469 2.31e-135 397
MS.gene75065.t1 MTR_3g006100 55.182 357 148 4 98 450 4 352 3.75e-135 393
MS.gene75065.t1 MTR_6g011110 68.345 278 85 2 175 450 1 277 9.49e-135 389
MS.gene75065.t1 MTR_3g006120 55.182 357 148 4 98 450 4 352 1.42e-134 391
MS.gene75065.t1 MTR_4g133490 57.143 357 139 5 98 450 2 348 9.31e-133 387
MS.gene75065.t1 MTR_3g006180 55.263 342 141 4 108 445 1 334 1.16e-127 373
MS.gene75065.t1 MTR_3g085910 56.173 324 81 4 97 408 2 276 7.09e-115 338
MS.gene75065.t1 MTR_4g133320 55.346 318 128 4 137 450 1 308 3.36e-111 330
MS.gene75065.t1 MTR_7g083950 46.330 436 191 13 23 450 32 432 4.84e-111 334
MS.gene75065.t1 MTR_3g045700 51.630 368 146 10 96 450 2 350 3.28e-106 319
MS.gene75065.t1 MTR_7g070100 48.451 355 169 7 100 450 6 350 6.75e-100 303
MS.gene75065.t1 MTR_3g086480 60.305 262 93 4 182 442 2 253 9.74e-100 299
MS.gene75065.t1 MTR_1g100280 46.196 368 150 9 93 450 8 337 1.55e-89 276
MS.gene75065.t1 MTR_1g109340 50.000 258 112 5 198 449 108 354 2.84e-71 229
MS.gene75065.t1 MTR_1g109340 38.095 126 46 3 7 132 12 105 3.92e-16 80.1
MS.gene75065.t1 MTR_6g091850 83.168 101 17 0 350 450 1 101 2.55e-60 192
MS.gene75065.t1 MTR_1g089085 53.642 151 64 3 88 236 29 175 1.14e-44 154
MS.gene75065.t1 MTR_1g109520 48.485 165 75 4 288 449 19 176 8.51e-40 141
MS.gene75065.t1 MTR_1g089620 61.667 120 41 1 269 388 34 148 2.82e-38 140
MS.gene75065.t1 MTR_1g106050 60.396 101 39 1 98 197 2 102 2.02e-33 122
MS.gene75065.t1 MTR_1g012330 55.118 127 54 1 175 298 1 127 7.81e-32 122
MS.gene75065.t1 MTR_1g109090 47.619 126 64 2 92 215 10 135 3.74e-30 114
MS.gene75065.t1 MTR_0128s0040 42.537 134 74 3 127 259 3 134 2.06e-26 103
MS.gene75065.t1 MTR_6g023220 25.000 288 210 3 107 392 22 305 7.39e-20 91.3
MS.gene75065.t1 MTR_1g093300 51.064 94 44 1 272 365 7 98 7.58e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 84 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCGTAATCGTTTAATTT+TGG 0.114594 6.3:+83840125 MS.gene75065:CDS
AGCATATTTCTTCTTGTAAA+TGG 0.163180 6.3:-83841531 None:intergenic
TCTTTGTTGGATTGCTTATT+CGG 0.232701 6.3:+83841695 MS.gene75065:CDS
TTTGATGACCTCTTTCAATT+TGG 0.238893 6.3:+83841267 MS.gene75065:CDS
TTATGTCAAGTTGGAATCTT+TGG 0.283864 6.3:+83841968 MS.gene75065:CDS
GACAAATTCCTCTGAGCCTT+TGG 0.284348 6.3:-83841619 None:intergenic
ATCAATCTCAAAATCTTTGT+TGG 0.303941 6.3:+83841682 MS.gene75065:CDS
AGGATGAATAAGGTACTTAA+AGG 0.337066 6.3:+83840105 MS.gene75065:CDS
ATGGCAAACGAACATGGAAT+TGG 0.345392 6.3:+83839943 MS.gene75065:CDS
TTTCAAAGAAAGGATGAATA+AGG 0.348934 6.3:+83840095 MS.gene75065:CDS
ATGCCAGAATTCATTCTTCC+TGG 0.356806 6.3:+83842134 MS.gene75065:CDS
TGACCACCTCGTTGTCGAAT+TGG 0.360565 6.3:-83840186 None:intergenic
AATTTATTGGAGGAATTTCA+TGG 0.361680 6.3:+83841323 MS.gene75065:CDS
CAAAACAACGTTACGTAGAT+TGG 0.369824 6.3:+83842198 MS.gene75065:CDS
TACTTCCGATTTGCCTATCA+TGG 0.378106 6.3:+83841450 MS.gene75065:CDS
CTTTGTTGGATTGCTTATTC+GGG 0.379417 6.3:+83841696 MS.gene75065:CDS
CTCAGAGGAATTTGTCTTGG+TGG 0.385475 6.3:+83841626 MS.gene75065:CDS
ATGTTCCATGTGGCAAATAC+AGG 0.390944 6.3:+83842087 MS.gene75065:CDS
TGCTTATTCGGGACCACATA+AGG 0.394621 6.3:+83841707 MS.gene75065:CDS
ATTTCTCAAGAGCGCACCTT+TGG 0.401502 6.3:-83841368 None:intergenic
GGCAAATACAGGGTGTATAA+AGG 0.407440 6.3:+83842098 MS.gene75065:CDS
CAGTTCAAAATTTCAAAGAA+AGG 0.407992 6.3:+83840085 MS.gene75065:CDS
AAGAGAACTGTCAACTTCCT+TGG 0.409046 6.3:+83841211 MS.gene75065:CDS
TATGTCAAGTTGGAATCTTT+GGG 0.417393 6.3:+83841969 MS.gene75065:CDS
GATGACCTCTTTCAATTTGG+TGG 0.428951 6.3:+83841270 MS.gene75065:CDS
TTGGACAAGTAATGGTTCTT+CGG 0.433887 6.3:-83841349 None:intergenic
ACACCAGGAAGAATGAATTC+TGG 0.440652 6.3:-83842137 None:intergenic
CGAACATGGAATTGGGTTTG+TGG 0.442412 6.3:+83839951 MS.gene75065:CDS
TGATTCGATGATCATTCATC+AGG 0.445423 6.3:-83840053 None:intergenic
AGAGAACTGTCAACTTCCTT+GGG 0.449563 6.3:+83841212 MS.gene75065:CDS
CTGGTGTAACTTCTAATTGT+TGG 0.451842 6.3:+83841844 MS.gene75065:CDS
AATCTGTGTTTCAAGGTAAG+AGG 0.459600 6.3:+83839983 MS.gene75065:CDS
TGGCAAACGAACATGGAATT+GGG 0.471607 6.3:+83839944 MS.gene75065:CDS
CACTGAGCAACCCGCGCATG+TGG 0.492803 6.3:+83842033 MS.gene75065:CDS
AGTGCTTAATATTATGTCAA+AGG 0.495744 6.3:+83841905 MS.gene75065:CDS
GGATGAATAAGGTACTTAAA+GGG 0.501407 6.3:+83840106 MS.gene75065:CDS
AATTCCATGTTCGTTTGCCA+TGG 0.506447 6.3:-83839941 None:intergenic
GTAGGGTTGGTTAGTTGTGA+TGG 0.506721 6.3:+83841873 MS.gene75065:CDS
CTAATTGTTGGTCACACGTA+GGG 0.509336 6.3:+83841856 MS.gene75065:CDS
AAGACCCATGATAGGCAAAT+CGG 0.519986 6.3:-83841455 None:intergenic
TCCGCTAGAAGACCCATGAT+AGG 0.521743 6.3:-83841463 None:intergenic
ATCTGTGTTTCAAGGTAAGA+GGG 0.522269 6.3:+83839984 MS.gene75065:CDS
TACCATGGATTATGTCAAGT+TGG 0.524896 6.3:+83841959 MS.gene75065:CDS
CAAGCTGAGTATCCCTATGT+TGG 0.527658 6.3:-83841781 None:intergenic
GCGCACCTTTGGACAAGTAA+TGG 0.527847 6.3:-83841357 None:intergenic
GCCTCCATGGCAAACGAACA+TGG 0.527907 6.3:+83839937 None:intergenic
AGGCTCAGAGGAATTTGTCT+TGG 0.528013 6.3:+83841623 MS.gene75065:CDS
TTAGAACTGAAGAATACTCC+TGG 0.536982 6.3:+83841825 MS.gene75065:CDS
GAAGTAAAATCTGTGTTTCA+AGG 0.545805 6.3:+83839976 MS.gene75065:CDS
GAGCGGCAATAACTAGGATG+TGG 0.552636 6.3:-83842176 None:intergenic
CAACGAGGTGGTCATAGTAA+TGG 0.556109 6.3:+83840195 MS.gene75065:CDS
TTCTCATAACCCCACATGCG+CGG 0.556155 6.3:-83842044 None:intergenic
GCCTATCATGGGTCTTCTAG+CGG 0.557470 6.3:+83841462 MS.gene75065:CDS
GTCACTGACAAGGCCAACAT+AGG 0.560597 6.3:+83841768 MS.gene75065:CDS
TCTCATAACCCCACATGCGC+GGG 0.566108 6.3:-83842043 None:intergenic
GCAAAGTCAACAACCTTATG+TGG 0.569183 6.3:-83841720 None:intergenic
CTGAGCAACCCGCGCATGTG+GGG 0.569892 6.3:+83842035 MS.gene75065:CDS
TACACCCTGTATTTGCCACA+TGG 0.574023 6.3:-83842092 None:intergenic
ACTTCCGATTTGCCTATCAT+GGG 0.586293 6.3:+83841451 MS.gene75065:CDS
GAGTGATAAACTTTATCGTG+AGG 0.586533 6.3:-83841411 None:intergenic
ATATTTCATCATGACACGAA+TGG 0.586960 6.3:+83841485 MS.gene75065:CDS
ACTGAGCAACCCGCGCATGT+GGG 0.589599 6.3:+83842034 MS.gene75065:CDS
AGTTCACTGCGTGTAACACC+AGG 0.590897 6.3:-83842152 None:intergenic
TCACTGACAAGGCCAACATA+GGG 0.593942 6.3:+83841769 MS.gene75065:CDS
ATACACCACCAAATTGAAAG+AGG 0.598201 6.3:-83841275 None:intergenic
CGTATATGTTGTCACTGACA+AGG 0.598708 6.3:+83841758 MS.gene75065:CDS
TTCCAACTTGACATAATCCA+TGG 0.602044 6.3:-83841961 None:intergenic
TGTTCCATGTGGCAAATACA+GGG 0.612242 6.3:+83842088 MS.gene75065:CDS
TTGTTGGTCACACGTAGGGT+TGG 0.615794 6.3:+83841860 MS.gene75065:CDS
CAACAATTAGAAGTTACACC+AGG 0.627295 6.3:-83841843 None:intergenic
ACATGGAATTGGGTTTGTGG+AGG 0.628720 6.3:+83839954 MS.gene75065:CDS
CAAGATAGACTTCTCTACCA+TGG 0.632047 6.3:+83841944 MS.gene75065:CDS
AAGAACCATTACTTGTCCAA+AGG 0.641369 6.3:+83841352 MS.gene75065:CDS
AATACGACGATGCTTCATGT+AGG 0.643363 6.3:-83840157 None:intergenic
AGTGCATAATACTTTCTCGT+CGG 0.645156 6.3:-83842014 None:intergenic
GATTCGATGATCATTCATCA+GGG 0.648898 6.3:-83840052 None:intergenic
TCTAATTGTTGGTCACACGT+AGG 0.652885 6.3:+83841855 MS.gene75065:CDS
ATGATGTCAAGCAAATCCCA+AGG 0.658074 6.3:-83841228 None:intergenic
TTTGCCACATGGAACATCGA+GGG 0.658254 6.3:-83842081 None:intergenic
ATTTGCCACATGGAACATCG+AGG 0.704595 6.3:-83842082 None:intergenic
TATGCCCTCGATGTTCCATG+TGG 0.716778 6.3:+83842077 MS.gene75065:CDS
CTTCCAATTCGACAACGAGG+TGG 0.719023 6.3:+83840183 MS.gene75065:CDS
TCGATGATCATTCATCAGGG+TGG 0.722997 6.3:-83840049 None:intergenic
ACACTTCCAATTCGACAACG+AGG 0.767405 6.3:+83840180 MS.gene75065:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAACATAAAAAAAATA+AGG + chr6.3:83840972-83840991 MS.gene75065:intron 10.0%
!! ATACATAATTATTTATATGT+TGG + chr6.3:83840998-83841017 MS.gene75065:intron 10.0%
!!! AATTTTATAAAATTTATTGG+AGG + chr6.3:83841313-83841332 MS.gene75065:CDS 10.0%
!!! GAGAATTTTATAAAATTTAT+TGG + chr6.3:83841310-83841329 MS.gene75065:CDS 10.0%
!! TGGTGTTTGTTTAAATATAA+GGG + chr6.3:83840424-83840443 MS.gene75065:intron 20.0%
!!! AAAATATTTTTCTGTTCTTG+CGG - chr6.3:83840805-83840824 None:intergenic 20.0%
!!! AATCTGATATATGTATGTTT+TGG + chr6.3:83840313-83840332 MS.gene75065:intron 20.0%
!!! AGAACAGAAAAATATTTTGT+AGG + chr6.3:83840807-83840826 MS.gene75065:intron 20.0%
!!! ATCTGATATATGTATGTTTT+GGG + chr6.3:83840314-83840333 MS.gene75065:intron 20.0%
!!! CTCATTTTCTATGATATTAT+GGG + chr6.3:83841069-83841088 MS.gene75065:intron 20.0%
!!! CTGGTGTTATTATATATTTT+AGG + chr6.3:83840355-83840374 MS.gene75065:intron 20.0%
!!! TATATTATTTGTTTGTTGCT+AGG + chr6.3:83840454-83840473 MS.gene75065:intron 20.0%
! AATTTATTGGAGGAATTTCA+TGG + chr6.3:83841323-83841342 MS.gene75065:CDS 25.0%
! AGCATATTTCTTCTTGTAAA+TGG - chr6.3:83841534-83841553 None:intergenic 25.0%
! AGTGCTTAATATTATGTCAA+AGG + chr6.3:83841905-83841924 MS.gene75065:CDS 25.0%
! ATCAATCTCAAAATCTTTGT+TGG + chr6.3:83841682-83841701 MS.gene75065:CDS 25.0%
! CAGTTCAAAATTTCAAAGAA+AGG + chr6.3:83840085-83840104 MS.gene75065:CDS 25.0%
! CCATAATATCATAGAAAATG+AGG - chr6.3:83841071-83841090 None:intergenic 25.0%
! CTGGTGTTTGTTTAAATATA+AGG + chr6.3:83840423-83840442 MS.gene75065:intron 25.0%
! GAAATTAAACTACAACAACT+AGG + chr6.3:83840924-83840943 MS.gene75065:intron 25.0%
! GATATTTGTTTCGAAAACAT+GGG + chr6.3:83841025-83841044 MS.gene75065:intron 25.0%
! GTTTGTTTAAATATAAGGGA+AGG + chr6.3:83840428-83840447 MS.gene75065:intron 25.0%
! TCAATTTCTCCAACAAATAA+CGG + chr6.3:83840399-83840418 MS.gene75065:intron 25.0%
! TTTCAAAGAAAGGATGAATA+AGG + chr6.3:83840095-83840114 MS.gene75065:CDS 25.0%
!! AAATATTTTGTAGGTAGGAT+TGG + chr6.3:83840816-83840835 MS.gene75065:intron 25.0%
!! CAGAAAAATATTTTGTAGGT+AGG + chr6.3:83840811-83840830 MS.gene75065:intron 25.0%
!! CCTCATTTTCTATGATATTA+TGG + chr6.3:83841068-83841087 MS.gene75065:intron 25.0%
!! TCTGATATATGTATGTTTTG+GGG + chr6.3:83840315-83840334 MS.gene75065:intron 25.0%
!! TTTTAGACATCTACAATATG+AGG + chr6.3:83842223-83842242 MS.gene75065:CDS 25.0%
!!! ATATATTTTAGGATACACCA+AGG + chr6.3:83840366-83840385 MS.gene75065:intron 25.0%
!!! CTTTCTTTGAAATTTTGAAC+TGG - chr6.3:83840087-83840106 None:intergenic 25.0%
ATATTTCATCATGACACGAA+TGG + chr6.3:83841485-83841504 MS.gene75065:CDS 30.0%
ATTCATTGCAAGCTATAACT+AGG + chr6.3:83840893-83840912 MS.gene75065:intron 30.0%
CAAAGGACAAAAAAAGAAGA+AGG + chr6.3:83841185-83841204 MS.gene75065:intron 30.0%
CATGTGTTAGTAGATTTCTT+AGG - chr6.3:83840666-83840685 None:intergenic 30.0%
CGATATTTGTTTCGAAAACA+TGG + chr6.3:83841024-83841043 MS.gene75065:intron 30.0%
GAAGTAAAATCTGTGTTTCA+AGG + chr6.3:83839976-83839995 MS.gene75065:CDS 30.0%
TATCATTCCATCTACTTACA+GGG + chr6.3:83840863-83840882 MS.gene75065:intron 30.0%
TCTTTGTTGGATTGCTTATT+CGG + chr6.3:83841695-83841714 MS.gene75065:CDS 30.0%
TGTAAGTAGATGGAATGATA+GGG - chr6.3:83840863-83840882 None:intergenic 30.0%
TGTTAGTAGATTTCTTAGGT+TGG - chr6.3:83840662-83840681 None:intergenic 30.0%
! AGGATGAATAAGGTACTTAA+AGG + chr6.3:83840105-83840124 MS.gene75065:CDS 30.0%
! ATTTGCTTGACATCATTTTG+AGG + chr6.3:83841235-83841254 MS.gene75065:CDS 30.0%
! GGATGAATAAGGTACTTAAA+GGG + chr6.3:83840106-83840125 MS.gene75065:CDS 30.0%
! TATTTGTTTGTTGCTAGGTA+TGG + chr6.3:83840459-83840478 MS.gene75065:intron 30.0%
! TTTGATGACCTCTTTCAATT+TGG + chr6.3:83841267-83841286 MS.gene75065:CDS 30.0%
!! CTGATATATGTATGTTTTGG+GGG + chr6.3:83840316-83840335 MS.gene75065:intron 30.0%
!! TATGTCAAGTTGGAATCTTT+GGG + chr6.3:83841969-83841988 MS.gene75065:CDS 30.0%
!! TTATGTCAAGTTGGAATCTT+TGG + chr6.3:83841968-83841987 MS.gene75065:CDS 30.0%
AAATTGAACTCAACTCTCCT+TGG - chr6.3:83840386-83840405 None:intergenic 35.0%
AAGAACCATTACTTGTCCAA+AGG + chr6.3:83841352-83841371 MS.gene75065:CDS 35.0%
AAGCTATAACTAGGTAGGAT+TGG + chr6.3:83840902-83840921 MS.gene75065:intron 35.0%
AATCTGTGTTTCAAGGTAAG+AGG + chr6.3:83839983-83840002 MS.gene75065:CDS 35.0%
AGTGCATAATACTTTCTCGT+CGG - chr6.3:83842017-83842036 None:intergenic 35.0%
ATACACCACCAAATTGAAAG+AGG - chr6.3:83841278-83841297 None:intergenic 35.0%
ATCTGTGTTTCAAGGTAAGA+GGG + chr6.3:83839984-83840003 MS.gene75065:CDS 35.0%
ATTGCAAGCTATAACTAGGT+AGG + chr6.3:83840897-83840916 MS.gene75065:intron 35.0%
CAAAACAACGTTACGTAGAT+TGG + chr6.3:83842198-83842217 MS.gene75065:CDS 35.0%
CAACAATTAGAAGTTACACC+AGG - chr6.3:83841846-83841865 None:intergenic 35.0%
CTATCATTCCATCTACTTAC+AGG + chr6.3:83840862-83840881 MS.gene75065:intron 35.0%
CTGGTGTAACTTCTAATTGT+TGG + chr6.3:83841844-83841863 MS.gene75065:CDS 35.0%
CTGTAAGTAGATGGAATGAT+AGG - chr6.3:83840864-83840883 None:intergenic 35.0%
CTTTGTTGGATTGCTTATTC+GGG + chr6.3:83841696-83841715 MS.gene75065:CDS 35.0%
GAGTGATAAACTTTATCGTG+AGG - chr6.3:83841414-83841433 None:intergenic 35.0%
GATTCGATGATCATTCATCA+GGG - chr6.3:83840055-83840074 None:intergenic 35.0%
GGCTGCTTAATTGTATATGT+AGG - chr6.3:83840641-83840660 None:intergenic 35.0%
GTTCATTCATATTGTGACAG+TGG - chr6.3:83840582-83840601 None:intergenic 35.0%
TCACAATATGAATGAACAGC+AGG + chr6.3:83840585-83840604 MS.gene75065:intron 35.0%
TCGGCCATGAAAATAAACAT+AGG + chr6.3:83840536-83840555 MS.gene75065:intron 35.0%
TGATTCGATGATCATTCATC+AGG - chr6.3:83840056-83840075 None:intergenic 35.0%
TTAAACTACAACAACTAGGC+AGG + chr6.3:83840928-83840947 MS.gene75065:intron 35.0%
TTACACTAACTCACTCATGT+AGG - chr6.3:83840499-83840518 None:intergenic 35.0%
TTAGAACTGAAGAATACTCC+TGG + chr6.3:83841825-83841844 MS.gene75065:CDS 35.0%
TTCCAACTTGACATAATCCA+TGG - chr6.3:83841964-83841983 None:intergenic 35.0%
TTGGACAAGTAATGGTTCTT+CGG - chr6.3:83841352-83841371 None:intergenic 35.0%
TTTGTTGCTAGGTATGGTAA+TGG + chr6.3:83840465-83840484 MS.gene75065:intron 35.0%
! GAAATTTTGAACTGGAAGTC+TGG - chr6.3:83840079-83840098 None:intergenic 35.0%
! TACCATGGATTATGTCAAGT+TGG + chr6.3:83841959-83841978 MS.gene75065:CDS 35.0%
! TATAGCTTGCAATGAATAGC+CGG - chr6.3:83840890-83840909 None:intergenic 35.0%
!! AGGGCGTAATCGTTTAATTT+TGG + chr6.3:83840125-83840144 MS.gene75065:CDS 35.0%
!! GGGCGTAATCGTTTAATTTT+GGG + chr6.3:83840126-83840145 MS.gene75065:CDS 35.0%
!! TTGGTGGTGTATGCAAAAAT+TGG + chr6.3:83841286-83841305 MS.gene75065:CDS 35.0%
AAAAACCTCCTGAACAAAGC+TGG + chr6.3:83840726-83840745 MS.gene75065:intron 40.0%
AAAACCTCCTGAACAAAGCT+GGG + chr6.3:83840727-83840746 MS.gene75065:intron 40.0%
AAACATAGGCGCCTTGTAAT+CGG + chr6.3:83840550-83840569 MS.gene75065:intron 40.0%
AACACCAGACCGTTATTTGT+TGG - chr6.3:83840411-83840430 None:intergenic 40.0%
AAGACACACTAACACACTCT+CGG + chr6.3:83840517-83840536 MS.gene75065:intron 40.0%
AAGACCCATGATAGGCAAAT+CGG - chr6.3:83841458-83841477 None:intergenic 40.0%
AAGAGAACTGTCAACTTCCT+TGG + chr6.3:83841211-83841230 MS.gene75065:CDS 40.0%
AATACGACGATGCTTCATGT+AGG - chr6.3:83840160-83840179 None:intergenic 40.0%
ACACCAGGAAGAATGAATTC+TGG - chr6.3:83842140-83842159 None:intergenic 40.0%
ACCCAAAACCAAACACAATG+AGG + chr6.3:83840615-83840634 MS.gene75065:intron 40.0%
AGAGAACTGTCAACTTCCTT+GGG + chr6.3:83841212-83841231 MS.gene75065:CDS 40.0%
ATCAGATTCTCTATTCGACC+TGG - chr6.3:83840301-83840320 None:intergenic 40.0%
ATGATGTCAAGCAAATCCCA+AGG - chr6.3:83841231-83841250 None:intergenic 40.0%
ATGCCAGAATTCATTCTTCC+TGG + chr6.3:83842134-83842153 MS.gene75065:CDS 40.0%
ATGGCAAACGAACATGGAAT+TGG + chr6.3:83839943-83839962 MS.gene75065:CDS 40.0%
ATGTTCCATGTGGCAAATAC+AGG + chr6.3:83842087-83842106 MS.gene75065:CDS 40.0%
CAAGATAGACTTCTCTACCA+TGG + chr6.3:83841944-83841963 MS.gene75065:CDS 40.0%
CGTATATGTTGTCACTGACA+AGG + chr6.3:83841758-83841777 MS.gene75065:CDS 40.0%
CTAATTGTTGGTCACACGTA+GGG + chr6.3:83841856-83841875 MS.gene75065:CDS 40.0%
GATGACCTCTTTCAATTTGG+TGG + chr6.3:83841270-83841289 MS.gene75065:CDS 40.0%
GCAAAGTCAACAACCTTATG+TGG - chr6.3:83841723-83841742 None:intergenic 40.0%
GGCAAATACAGGGTGTATAA+AGG + chr6.3:83842098-83842117 MS.gene75065:CDS 40.0%
GGGAAAATTTGACTCACTTC+TGG + chr6.3:83840336-83840355 MS.gene75065:intron 40.0%
TATGTAGGCCTCATTGTGTT+TGG - chr6.3:83840626-83840645 None:intergenic 40.0%
TCACAACAAACGACGATGTT+AGG - chr6.3:83841163-83841182 None:intergenic 40.0%
TCAGATTCTCTATTCGACCT+GGG - chr6.3:83840300-83840319 None:intergenic 40.0%
TCTAATTGTTGGTCACACGT+AGG + chr6.3:83841855-83841874 MS.gene75065:CDS 40.0%
TGGCAAACGAACATGGAATT+GGG + chr6.3:83839944-83839963 MS.gene75065:CDS 40.0%
TGTTCCATGTGGCAAATACA+GGG + chr6.3:83842088-83842107 MS.gene75065:CDS 40.0%
TTCTCCAACAAATAACGGTC+TGG + chr6.3:83840404-83840423 MS.gene75065:intron 40.0%
! ACTTCCGATTTGCCTATCAT+GGG + chr6.3:83841451-83841470 MS.gene75065:CDS 40.0%
! AGTGGTTAGTTCCGATTACA+AGG - chr6.3:83840564-83840583 None:intergenic 40.0%
! GGTTTGGTTTCAAAGGCTTT+GGG - chr6.3:83840699-83840718 None:intergenic 40.0%
! TACTTCCGATTTGCCTATCA+TGG + chr6.3:83841450-83841469 MS.gene75065:CDS 40.0%
! TTCAGGAGGTTTTTGTTCTG+CGG - chr6.3:83840720-83840739 None:intergenic 40.0%
! TTTCTGTTCTTGCGGTTTTG+AGG - chr6.3:83840797-83840816 None:intergenic 40.0%
!! CGTCGTTTGTTGTGATACAA+AGG + chr6.3:83841168-83841187 MS.gene75065:intron 40.0%
!! GGCGCCTATGTTTATTTTCA+TGG - chr6.3:83840543-83840562 None:intergenic 40.0%
!! TGTTTTGAGCGGCAATAACT+AGG - chr6.3:83842185-83842204 None:intergenic 40.0%
!!! CTACGTAACGTTGTTTTGAG+CGG - chr6.3:83842196-83842215 None:intergenic 40.0%
!!! GCCTCATTGTGTTTGGTTTT+GGG - chr6.3:83840619-83840638 None:intergenic 40.0%
!!! GTCTTGCTTGCTTTTTCCAA+AGG + chr6.3:83841603-83841622 MS.gene75065:CDS 40.0%
ACACTTCCAATTCGACAACG+AGG + chr6.3:83840180-83840199 MS.gene75065:CDS 45.0%
ACATGGAATTGGGTTTGTGG+AGG + chr6.3:83839954-83839973 MS.gene75065:CDS 45.0%
AGGCTCAGAGGAATTTGTCT+TGG + chr6.3:83841623-83841642 MS.gene75065:CDS 45.0%
ATGAATGAACAGCAGGCCAA+AGG + chr6.3:83840592-83840611 MS.gene75065:intron 45.0%
ATTTGCCACATGGAACATCG+AGG - chr6.3:83842085-83842104 None:intergenic 45.0%
CAACGAGGTGGTCATAGTAA+TGG + chr6.3:83840195-83840214 MS.gene75065:CDS 45.0%
CAAGCTGAGTATCCCTATGT+TGG - chr6.3:83841784-83841803 None:intergenic 45.0%
CGAACATGGAATTGGGTTTG+TGG + chr6.3:83839951-83839970 MS.gene75065:CDS 45.0%
CTACAACAACTAGGCAGGAT+TGG + chr6.3:83840933-83840952 MS.gene75065:intron 45.0%
CTCAGAGGAATTTGTCTTGG+TGG + chr6.3:83841626-83841645 MS.gene75065:CDS 45.0%
GACAAATTCCTCTGAGCCTT+TGG - chr6.3:83841622-83841641 None:intergenic 45.0%
GAGGATTGCTTCAAGCTGAT+TGG - chr6.3:83840778-83840797 None:intergenic 45.0%
TACACCCTGTATTTGCCACA+TGG - chr6.3:83842095-83842114 None:intergenic 45.0%
TCACTGACAAGGCCAACATA+GGG + chr6.3:83841769-83841788 MS.gene75065:CDS 45.0%
TCGATGATCATTCATCAGGG+TGG - chr6.3:83840052-83840071 None:intergenic 45.0%
TGCTTATTCGGGACCACATA+AGG + chr6.3:83841707-83841726 MS.gene75065:CDS 45.0%
TTATTTCACAAAACCCGCCC+AGG + chr6.3:83840280-83840299 MS.gene75065:intron 45.0%
TTCCATCTACTTACAGGGAC+CGG + chr6.3:83840868-83840887 MS.gene75065:intron 45.0%
TTTGCCACATGGAACATCGA+GGG - chr6.3:83842084-83842103 None:intergenic 45.0%
! ATTTCTCAAGAGCGCACCTT+TGG - chr6.3:83841371-83841390 None:intergenic 45.0%
! GAGGTTTTTGTTCTGCGGTT+TGG - chr6.3:83840715-83840734 None:intergenic 45.0%
! GATTGGCATTGTGTTGCTGT+GGG - chr6.3:83840761-83840780 None:intergenic 45.0%
! TGATTGGCATTGTGTTGCTG+TGG - chr6.3:83840762-83840781 None:intergenic 45.0%
!! CGGTTTGGTTTCAAAGGCTT+TGG - chr6.3:83840700-83840719 None:intergenic 45.0%
!! GGCCTCATTGTGTTTGGTTT+TGG - chr6.3:83840620-83840639 None:intergenic 45.0%
!! GTAGGGTTGGTTAGTTGTGA+TGG + chr6.3:83841873-83841892 MS.gene75065:CDS 45.0%
!! GTTCTGCGGTTTGGTTTCAA+AGG - chr6.3:83840706-83840725 None:intergenic 45.0%
!!! GTGTTTGGTTTTGGGTCCTT+TGG - chr6.3:83840611-83840630 None:intergenic 45.0%
!!! GTTTTTGCCCAGCTTTGTTC+AGG - chr6.3:83840737-83840756 None:intergenic 45.0%
!!! TGCTTTTTCCAAAGGCTCAG+AGG + chr6.3:83841611-83841630 MS.gene75065:CDS 45.0%
!!! ATGATTTTTTATAATTATTA+TGG - chr6.3:83841096-83841115 None:intergenic 5.0%
AGTTCACTGCGTGTAACACC+AGG - chr6.3:83842155-83842174 None:intergenic 50.0%
ATTCTCTATTCGACCTGGGC+GGG - chr6.3:83840296-83840315 None:intergenic 50.0%
CTTCCAATTCGACAACGAGG+TGG + chr6.3:83840183-83840202 MS.gene75065:CDS 50.0%
GAGCGGCAATAACTAGGATG+TGG - chr6.3:83842179-83842198 None:intergenic 50.0%
GATTCTCTATTCGACCTGGG+CGG - chr6.3:83840297-83840316 None:intergenic 50.0%
GCCTATCATGGGTCTTCTAG+CGG + chr6.3:83841462-83841481 MS.gene75065:CDS 50.0%
GCGCACCTTTGGACAAGTAA+TGG - chr6.3:83841360-83841379 None:intergenic 50.0%
GTCACTGACAAGGCCAACAT+AGG + chr6.3:83841768-83841787 MS.gene75065:CDS 50.0%
TATGCCCTCGATGTTCCATG+TGG + chr6.3:83842077-83842096 MS.gene75065:CDS 50.0%
TCCGCTAGAAGACCCATGAT+AGG - chr6.3:83841466-83841485 None:intergenic 50.0%
TGACCACCTCGTTGTCGAAT+TGG - chr6.3:83840189-83840208 None:intergenic 50.0%
TTCTCATAACCCCACATGCG+CGG - chr6.3:83842047-83842066 None:intergenic 50.0%
TTGTTGGTCACACGTAGGGT+TGG + chr6.3:83841860-83841879 MS.gene75065:CDS 50.0%
!! TTTGCCCAGCTTTGTTCAGG+AGG - chr6.3:83840734-83840753 None:intergenic 50.0%
AGCCGGTCCCTGTAAGTAGA+TGG - chr6.3:83840873-83840892 None:intergenic 55.0%
TCTCATAACCCCACATGCGC+GGG - chr6.3:83842046-83842065 None:intergenic 55.0%
!! CAAAGGCTTTGGGTGATGCG+AGG - chr6.3:83840689-83840708 None:intergenic 55.0%
ACTGAGCAACCCGCGCATGT+GGG + chr6.3:83842034-83842053 MS.gene75065:CDS 60.0%
CACTGAGCAACCCGCGCATG+TGG + chr6.3:83842033-83842052 MS.gene75065:CDS 65.0%
CTGAGCAACCCGCGCATGTG+GGG + chr6.3:83842035-83842054 MS.gene75065:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 83839943 83842268 83839943 ID=MS.gene75065
chr6.3 mRNA 83839943 83842268 83839943 ID=MS.gene75065.t1;Parent=MS.gene75065
chr6.3 exon 83839943 83840216 83839943 ID=MS.gene75065.t1.exon1;Parent=MS.gene75065.t1
chr6.3 CDS 83839943 83840216 83839943 ID=cds.MS.gene75065.t1;Parent=MS.gene75065.t1
chr6.3 exon 83841190 83842268 83841190 ID=MS.gene75065.t1.exon2;Parent=MS.gene75065.t1
chr6.3 CDS 83841190 83842268 83841190 ID=cds.MS.gene75065.t1;Parent=MS.gene75065.t1
Gene Sequence

>MS.gene75065

ATGGCAAACGAACATGGAATTGGGTTTGTGGAGGAAGTAAAATCTGTGTTTCAAGGTAAGAGGGAAGAGTATGAAGAGTTTATAAAAGACATACATGCTTTTAAGACCACCCTGATGAATGATCATCGAATCACCAGACTTCCAGTTCAAAATTTCAAAGAAAGGATGAATAAGGTACTTAAAGGGCGTAATCGTTTAATTTTGGGATTCAACGCCTACATGAAGCATCGTCGTATTACACTTCCAATTCGACAACGAGGTGGTCATAGTAATGGTTAGTACTTTTTTTTTTTTTTTTTTATGATTATGTTGATATTTTTTTATACTATATTGAAACTTATTTCACAAAACCCGCCCAGGTCGAATAGAGAATCTGATATATGTATGTTTTGGGGGAAAATTTGACTCACTTCTGGTGTTATTATATATTTTAGGATACACCAAGGAGAGTTGAGTTCAATTTCTCCAACAAATAACGGTCTGGTGTTTGTTTAAATATAAGGGAAGGTCGTATATTATTTGTTTGTTGCTAGGTATGGTAATGGATGAGTTTCCTACATGAGTGAGTTAGTGTAAGACACACTAACACACTCTCGGCCATGAAAATAAACATAGGCGCCTTGTAATCGGAACTAACCACTGTCACAATATGAATGAACAGCAGGCCAAAGGACCCAAAACCAAACACAATGAGGCCTACATATACAATTAAGCAGCCAACCTAAGAAATCTACTAACACATGCCTCGCATCACCCAAAGCCTTTGAAACCAAACCGCAGAACAAAAACCTCCTGAACAAAGCTGGGCAAAAACTCCCACAGCAACACAATGCCAATCAGCTTGAAGCAATCCTCAAAACCGCAAGAACAGAAAAATATTTTGTAGGTAGGATTGGAAATTAAACTACTTAAGACAACCCTATCATTCCATCTACTTACAGGGACCGGCTATTCATTGCAAGCTATAACTAGGTAGGATTGGAAATTAAACTACAACAACTAGGCAGGATTGGAAATTAAACTACTTACAGAAAAACATAAAAAAAATAAGGATAATACATAATTATTTATATGTTGGTCTCGATATTTGTTTCGAAAACATGGGAAAATAATATTTCTTTATCTCCTCATTTTCTATGATATTATGGGACCATAATAATTATAAAAAATCATGTTTTAGAAATATAGAAAGAAAAAAAAAACAATTTTGTAAATCACCTAACATCGTCGTTTGTTGTGATACAAAGGACAAAAAAAGAAGAAGGTAGAAGAGAACTGTCAACTTCCTTGGGATTTGCTTGACATCATTTTGAGGAATCTAGATTTTGATGACCTCTTTCAATTTGGTGGTGTATGCAAAAATTGGCGAGAATTTTATAAAATTTATTGGAGGAATTTCATGGCATCCGAAGAACCATTACTTGTCCAAAGGTGCGCTCTTGAGAAATCTTTCAACTTCTTCAGCTTACCTCACGATAAAGTTTATCACTCAAAGATGATCAATAACTACTTCCGATTTGCCTATCATGGGTCTTCTAGCGGATATTTCATCATGACACGAATGGATAATTCATTTATACTTATTAATCCATTTACAAGAAGAAATATGCTAATCAATAACTCAGTCTTCAATGTTGATTTCAAACATTTTTCTTGCAAAGTCTTGCTTGCTTTTTCCAAAGGCTCAGAGGAATTTGTCTTGGTGGTTTTATGTATTAATTCTGATAATTTGCATGTCTATCAATCTCAAAATCTTTGTTGGATTGCTTATTCGGGACCACATAAGGTTGTTGACTTTGCTGTTTTAAATTATATCGTATATGTTGTCACTGACAAGGCCAACATAGGGATACTCAGCTTGAAATATGCAAATATAAATTTTTTAGAACTGAAGAATACTCCTGGTGTAACTTCTAATTGTTGGTCACACGTAGGGTTGGTTAGTTGTGATGGATATCTTTTAGTGCTTAATATTATGTCAAAGGTAACGTTTAACGTGTACAAGATAGACTTCTCTACCATGGATTATGTCAAGTTGGAATCTTTGGGTGACATTGCAATATTTCATCTTCCGACGAGAAAGTATTATGCACTGAGCAACCCGCGCATGTGGGGTTATGAGAACAATTCTATCTATGCCCTCGATGTTCCATGTGGCAAATACAGGGTGTATAAAGGAGATAACAATAAAATGCCAGAATTCATTCTTCCTGGTGTTACACGCAGTGAACTTCCACATCCTAGTTATTGCCGCTCAAAACAACGTTACGTAGATTGGTGTTTTAGACATCTACAATATGAGGTAGATTATACTCTTGCTGAGTAG
Protein sequence

>MS.gene75065.t1

MANEHGIGFVEEVKSVFQGKREEYEEFIKDIHAFKTTLMNDHRITRLPVQNFKERMNKVLKGRNRLILGFNAYMKHRRITLPIRQRGGHSNGQKKKKVEENCQLPWDLLDIILRNLDFDDLFQFGGVCKNWREFYKIYWRNFMASEEPLLVQRCALEKSFNFFSLPHDKVYHSKMINNYFRFAYHGSSSGYFIMTRMDNSFILINPFTRRNMLINNSVFNVDFKHFSCKVLLAFSKGSEEFVLVVLCINSDNLHVYQSQNLCWIAYSGPHKVVDFAVLNYIVYVVTDKANIGILSLKYANINFLELKNTPGVTSNCWSHVGLVSCDGYLLVLNIMSKVTFNVYKIDFSTMDYVKLESLGDIAIFHLPTRKYYALSNPRMWGYENNSIYALDVPCGKYRVYKGDNNKMPEFILPGVTRSELPHPSYCRSKQRYVDWCFRHLQYEVDYTLAE