AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024275

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024275.t1 MTR_7g083950 77.189 434 95 3 1 433 2 432 0.0 664
MS.gene024275.t1 MTR_3g045700 66.477 352 116 2 82 433 1 350 1.07e-156 447
MS.gene024275.t1 MTR_3g006010 49.785 466 181 10 11 430 8 466 2.70e-131 387
MS.gene024275.t1 MTR_1g100280 58.380 358 117 5 80 433 8 337 1.39e-123 362
MS.gene024275.t1 MTR_6g091830 47.300 463 198 15 7 433 3 455 1.90e-116 348
MS.gene024275.t1 MTR_3g006120 54.520 354 151 6 82 430 1 349 4.59e-116 343
MS.gene024275.t1 MTR_6g092140 47.084 463 199 15 7 433 3 455 7.85e-116 347
MS.gene024275.t1 MTR_3g006100 53.782 357 155 6 82 433 1 352 2.73e-115 342
MS.gene024275.t1 MTR_4g133490 57.345 354 139 7 85 433 2 348 3.27e-115 341
MS.gene024275.t1 MTR_3g006180 54.227 343 147 6 95 432 1 338 4.77e-109 325
MS.gene024275.t1 MTR_3g068220 53.951 367 140 11 82 431 1 355 1.90e-108 324
MS.gene024275.t1 MTR_7g070100 51.977 354 156 7 86 433 5 350 3.12e-106 318
MS.gene024275.t1 MTR_3g006140 51.507 365 157 9 78 432 19 373 1.34e-105 318
MS.gene024275.t1 MTR_1g109340 61.479 257 97 2 178 432 98 354 9.82e-99 299
MS.gene024275.t1 MTR_1g109340 46.341 123 45 6 1 120 2 106 8.69e-18 84.7
MS.gene024275.t1 MTR_4g133320 55.696 316 126 7 124 433 1 308 2.23e-93 284
MS.gene024275.t1 MTR_6g088340 41.921 458 184 16 16 433 18 433 2.05e-84 265
MS.gene024275.t1 MTR_3g085910 45.345 333 106 10 84 399 2 275 3.74e-77 241
MS.gene024275.t1 MTR_3g086480 51.136 264 104 9 172 424 3 252 1.60e-66 213
MS.gene024275.t1 MTR_6g011110 47.586 290 120 10 163 433 1 277 1.35e-65 211
MS.gene024275.t1 MTR_1g109520 62.733 161 50 2 279 432 19 176 4.98e-58 188
MS.gene024275.t1 MTR_1g089620 65.185 135 38 3 256 390 30 155 9.85e-46 160
MS.gene024275.t1 MTR_1g089085 59.060 149 53 5 79 225 33 175 1.08e-43 151
MS.gene024275.t1 MTR_1g106050 60.150 133 44 3 85 210 2 132 1.88e-41 144
MS.gene024275.t1 MTR_1g109090 53.333 150 68 2 71 219 2 150 5.57e-40 140
MS.gene024275.t1 MTR_1g012330 54.167 144 62 4 163 304 1 142 8.73e-33 124
MS.gene024275.t1 MTR_5g073430 72.152 79 22 0 1 79 1 79 1.60e-32 119
MS.gene024275.t1 MTR_1g093300 62.745 102 38 0 257 358 1 102 1.02e-30 115
MS.gene024275.t1 MTR_6g023220 27.083 336 225 11 89 418 17 338 2.10e-21 95.5
MS.gene024275.t1 MTR_0128s0040 40.690 145 68 6 114 250 3 137 7.42e-19 83.2
MS.gene024275.t1 MTR_6g091850 45.192 104 45 4 339 433 1 101 1.27e-18 81.3
MS.gene024275.t1 MTR_1g104940 42.202 109 57 4 6 114 9 111 4.74e-14 68.9
MS.gene024275.t1 MTR_3g006065 52.055 73 34 1 11 83 90 161 5.29e-12 64.7
MS.gene024275.t1 MTR_1g091047 52.113 71 29 4 10 79 8 74 5.78e-12 61.6
MS.gene024275.t1 MTR_3g006125 54.795 73 30 2 11 83 89 158 7.09e-12 65.9
MS.gene024275.t1 MTR_8g062700 38.525 122 63 5 10 130 41 151 7.41e-12 68.2
MS.gene024275.t1 MTR_8g062700 38.525 122 63 5 10 130 41 151 7.48e-12 68.2
MS.gene024275.t1 MTR_3g006185 53.425 73 31 2 11 83 8 77 9.17e-12 63.9
MS.gene024275.t1 MTR_3g006150 52.778 72 33 1 11 82 90 160 1.38e-11 63.2
MS.gene024275.t1 MTR_6g008970 55.714 70 27 3 10 79 62 127 2.11e-11 66.6
MS.gene024275.t1 MTR_3g006105 48.810 84 33 3 11 94 8 81 2.33e-11 62.8
MS.gene024275.t1 MTR_5g036670 46.739 92 40 4 4 90 31 118 2.55e-11 66.6
MS.gene024275.t1 MTR_7g013410 51.724 58 27 1 17 74 3 59 4.08e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024275.t1 AT3G01320 45.455 88 44 3 10 97 56 139 1.97e-12 70.1
MS.gene024275.t1 AT3G01320 45.455 88 44 3 10 97 56 139 2.00e-12 70.1
MS.gene024275.t1 AT5G15020 37.705 122 62 5 10 130 51 159 5.07e-12 68.6
MS.gene024275.t1 AT5G15020 37.705 122 62 5 10 130 51 159 5.62e-12 68.6

Find 88 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATATGGAGTACAATA+TGG 0.249161 7.3:+24590125 MS.gene024275:CDS
CTTGAAGAAGTAATGGTTCT+TGG 0.256600 7.3:-24589556 None:intergenic
GTCTATCAATCTCGATATTC+TGG 0.273495 7.3:+24589887 MS.gene024275:CDS
AATTTACTGGAGAAATTTCT+TGG 0.276177 7.3:+24589529 MS.gene024275:CDS
ACAACATGCAGTGTGTATTC+AGG 0.284588 7.3:+24590319 MS.gene024275:CDS
CAAGTTTCCTCAAGTTTGAT+TGG 0.335961 7.3:+24590392 MS.gene024275:CDS
TGCACTTGAGTTTCTTCTTA+AGG 0.341291 7.3:+24588957 MS.gene024275:CDS
AAAACTCATAAAAGATTTCA+AGG 0.352278 7.3:+24589032 MS.gene024275:CDS
CAAGCTAAGTACTCCAATAT+TGG 0.352561 7.3:-24589999 None:intergenic
CTCTCATATCCCCACATGTC+CGG 0.359142 7.3:-24590265 None:intergenic
TTGGCCGGGTATGCTAATAA+AGG 0.359207 7.3:-24589606 None:intergenic
GATGACCACTTTCAGTTTGC+CGG 0.363031 7.3:+24589476 MS.gene024275:CDS
GTCACTCATAAGGCCAATAT+TGG 0.365859 7.3:+24589986 MS.gene024275:CDS
TATGTCAAAATGAAAACTTT+AGG 0.369262 7.3:+24590181 MS.gene024275:CDS
TTGAAGAAGTAATGGTTCTT+GGG 0.389487 7.3:-24589555 None:intergenic
CTCTAACGAATTTGTCTTGG+TGG 0.394656 7.3:+24589838 MS.gene024275:CDS
AGGGAGGGTTGTTGACTTTG+TGG 0.410514 7.3:+24589940 MS.gene024275:CDS
CTCCCAATGTACCACTTTCC+AGG 0.424778 7.3:+24590059 MS.gene024275:CDS
TTGCCGGTGTGTGCAAGAAT+TGG 0.432034 7.3:+24589492 MS.gene024275:CDS
GTCATCGATATCTAGTGTTT+CGG 0.443080 7.3:-24589459 None:intergenic
ACCTTCCTCATCATGCCAAC+TGG 0.443787 7.3:+24589138 MS.gene024275:CDS
ATCAATCTCGATATTCTGGT+TGG 0.444878 7.3:+24589891 MS.gene024275:CDS
TTTAATATGGAGTACAATAT+GGG 0.449695 7.3:+24590126 MS.gene024275:CDS
TATTCGACAATGGAAAAGTC+AGG 0.454475 7.3:+24589920 MS.gene024275:CDS
AATATATGTTGTCACTCATA+AGG 0.454953 7.3:+24589976 MS.gene024275:CDS
GTAGTCAATTTCCCTACCTC+TGG 0.458448 7.3:+24589767 MS.gene024275:CDS
TCAATCTCGATATTCTGGTT+GGG 0.476385 7.3:+24589892 MS.gene024275:CDS
GCAGCTCCCTCACTCTTCCT+TGG 0.477319 7.3:-24589080 None:intergenic
AGTTTATTGCTCGAAGATGA+TGG 0.477552 7.3:+24589631 MS.gene024275:CDS
TTCTAGCGGTTATTGTGTCA+TGG 0.478420 7.3:+24589688 MS.gene024275:CDS
GGGAAAACGGTGAAGAAGGT+AGG 0.482082 7.3:+24589395 MS.gene024275:intron
GACCTGGAAAGTGGTACATT+GGG 0.484680 7.3:-24590061 None:intergenic
TACCACTTTCCAGGTCCCTT+AGG 0.484707 7.3:+24590068 MS.gene024275:CDS
AGAGAATTGTCAACTTCCTA+TGG 0.486101 7.3:+24589418 MS.gene024275:CDS
TTAGAATAAGTGAATTATTG+TGG 0.492973 7.3:-24589718 None:intergenic
AGTTTGTTACTTCCAGAGGT+AGG 0.497020 7.3:-24589779 None:intergenic
GTTTGTTACTTCCAGAGGTA+GGG 0.498063 7.3:-24589778 None:intergenic
ATGGAGTACAATATGGGAAG+TGG 0.503968 7.3:+24590132 MS.gene024275:CDS
TACACTTCTTGAAGAAGTAA+TGG 0.504305 7.3:-24589563 None:intergenic
GCTGAAAGAATTGATATAAG+AGG 0.511724 7.3:+24589054 MS.gene024275:CDS
ATGCTCTAACGAATTTGTCT+TGG 0.512229 7.3:+24589835 MS.gene024275:CDS
GTGATACAAAGTAGGGAAAA+CGG 0.519610 7.3:+24589382 MS.gene024275:intron
AAACTTGTTCCATGAGGAGC+TGG 0.519686 7.3:-24590376 None:intergenic
TCTCATATCCCCACATGTCC+GGG 0.523100 7.3:-24590264 None:intergenic
GGACCTGGAAAGTGGTACAT+TGG 0.527736 7.3:-24590062 None:intergenic
ACTTTCCAGGTCCCTTAGGT+TGG 0.529041 7.3:+24590072 MS.gene024275:CDS
AGAGTGAGGGAGCTGCTTCA+AGG 0.529263 7.3:+24589087 MS.gene024275:CDS
CATCATGGCCATTGTTTCGA+GGG 0.532022 7.3:-24588933 None:intergenic
GAGCTGCTTCAAGGACATCC+AGG 0.532286 7.3:+24589096 MS.gene024275:CDS
TCATCATGGCCATTGTTTCG+AGG 0.533555 7.3:-24588934 None:intergenic
CATCACAGCTAACCAACCTA+AGG 0.538273 7.3:-24590084 None:intergenic
AGTAGGGAAAACGGTGAAGA+AGG 0.541106 7.3:+24589391 MS.gene024275:intron
TATTCCTTTATTAGCATACC+CGG 0.542716 7.3:+24589602 MS.gene024275:CDS
AGATGATGGAGTCCCTCGTA+CGG 0.548051 7.3:+24589645 MS.gene024275:CDS
CCGGTGTGTGCAAGAATTGG+AGG 0.558085 7.3:+24589495 MS.gene024275:CDS
TCTAAGTTTGTTACTTCCAG+AGG 0.558528 7.3:-24589783 None:intergenic
ACACACCGGCAAACTGAAAG+TGG 0.564920 7.3:-24589481 None:intergenic
ATGATATCAAGCACATCCAT+AGG 0.565205 7.3:-24589434 None:intergenic
AACCTAAGGGACCTGGAAAG+TGG 0.565211 7.3:-24590070 None:intergenic
CATTGAGCAACCCGGACATG+TGG 0.567823 7.3:+24590254 MS.gene024275:CDS
ATTACGCTTCCAGCTCCTCA+TGG 0.574519 7.3:+24590367 MS.gene024275:CDS
GAAACTCAAGTGCATCATCA+TGG 0.574862 7.3:-24588948 None:intergenic
TTGGGTTACTTATTCGACAA+TGG 0.575504 7.3:+24589910 MS.gene024275:CDS
TGCTAAAAGCAAGCAAGGCA+CGG 0.577996 7.3:-24589811 None:intergenic
ATGAACATCCCTCGAAACAA+TGG 0.578173 7.3:+24588925 MS.gene024275:CDS
GCATTTGCTAAAAGCAAGCA+AGG 0.585085 7.3:-24589816 None:intergenic
TAAAACACCAATCAAACTTG+AGG 0.597972 7.3:-24590399 None:intergenic
CATATGCGCACCACCGTACG+AGG 0.598394 7.3:-24589658 None:intergenic
ACGAACCAGTTGGCATGATG+AGG 0.598544 7.3:-24589143 None:intergenic
TTGTTATGCATTGAGCAACC+CGG 0.598873 7.3:+24590246 MS.gene024275:CDS
ATTGATATAAGAGGTGTCCA+AGG 0.601739 7.3:+24589063 MS.gene024275:CDS
GCTAACCAACCTAAGGGACC+TGG 0.603454 7.3:-24590077 None:intergenic
AGGTGTCCAAGGAAGAGTGA+GGG 0.605251 7.3:+24589074 MS.gene024275:CDS
ATTGAGCAACCCGGACATGT+GGG 0.605413 7.3:+24590255 MS.gene024275:CDS
TTGAATCTGAATATTAAACC+TGG 0.621609 7.3:-24589114 None:intergenic
ACCAGTTGGCATGATGAGGA+AGG 0.622788 7.3:-24589139 None:intergenic
GCATATGTCACTTCTTCTAG+CGG 0.624905 7.3:+24589674 MS.gene024275:CDS
ATAAAGGAATATGATACACT+AGG 0.628627 7.3:-24589590 None:intergenic
GACAATGGAAAAGTCAGGGA+GGG 0.630769 7.3:+24589925 MS.gene024275:CDS
TTGAGCAACCCGGACATGTG+GGG 0.641021 7.3:+24590256 MS.gene024275:CDS
ATCACAGCTAACCAACCTAA+GGG 0.644653 7.3:-24590083 None:intergenic
TGATGGAGTCCCTCGTACGG+TGG 0.647091 7.3:+24589648 MS.gene024275:CDS
CCTCCAATTCTTGCACACAC+CGG 0.651110 7.3:-24589495 None:intergenic
ATTCGACAATGGAAAAGTCA+GGG 0.652577 7.3:+24589921 MS.gene024275:CDS
GAGGTGTCCAAGGAAGAGTG+AGG 0.685556 7.3:+24589073 MS.gene024275:CDS
TTGAGGAAACTTGTTCCATG+AGG 0.687755 7.3:-24590382 None:intergenic
CGACAATGGAAAAGTCAGGG+AGG 0.713647 7.3:+24589924 MS.gene024275:CDS
ATATGCGCACCACCGTACGA+GGG 0.719358 7.3:-24589657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTAAATAGAAAAACAT+AGG + chr7.3:24589330-24589349 MS.gene024275:intron 15.0%
!! AAAACTCATAAAAGATTTCA+AGG + chr7.3:24589032-24589051 MS.gene024275:CDS 20.0%
!! ATTTAATATGGAGTACAATA+TGG + chr7.3:24590125-24590144 MS.gene024275:CDS 20.0%
!! TATGTCAAAATGAAAACTTT+AGG + chr7.3:24590181-24590200 MS.gene024275:CDS 20.0%
!! TTAGAATAAGTGAATTATTG+TGG - chr7.3:24589721-24589740 None:intergenic 20.0%
!! TTTAATATGGAGTACAATAT+GGG + chr7.3:24590126-24590145 MS.gene024275:CDS 20.0%
!!! TTTCATTTTGACATAATTCA+TGG - chr7.3:24590176-24590195 None:intergenic 20.0%
!!! TTTTAGTGGTTGATTTAATA+TGG + chr7.3:24590113-24590132 MS.gene024275:CDS 20.0%
! AACAGATAAAGCAAAAGTAA+AGG - chr7.3:24589227-24589246 None:intergenic 25.0%
! AATATATGTTGTCACTCATA+AGG + chr7.3:24589976-24589995 MS.gene024275:CDS 25.0%
! AATTTACTGGAGAAATTTCT+TGG + chr7.3:24589529-24589548 MS.gene024275:CDS 25.0%
! ATAAAGGAATATGATACACT+AGG - chr7.3:24589593-24589612 None:intergenic 25.0%
! ATAGATCGTAGAATTATTGA+AGG - chr7.3:24589260-24589279 None:intergenic 25.0%
! ATCACAACAATAACAGTATT+AGG - chr7.3:24589367-24589386 None:intergenic 25.0%
! TAGATCGTAGAATTATTGAA+GGG - chr7.3:24589259-24589278 None:intergenic 25.0%
! TATTGTTGTGATACAAAGTA+GGG + chr7.3:24589375-24589394 MS.gene024275:intron 25.0%
! TTATTGTTGTGATACAAAGT+AGG + chr7.3:24589374-24589393 MS.gene024275:intron 25.0%
! TTGAATCTGAATATTAAACC+TGG - chr7.3:24589117-24589136 None:intergenic 25.0%
!! CTCAATGCATAACAATTTTT+CGG - chr7.3:24590241-24590260 None:intergenic 25.0%
!!! ACCTTCTTTTTTCTTGTAAA+TGG - chr7.3:24589749-24589768 None:intergenic 25.0%
!!! CCTTCTTTTTTCTTGTAAAT+GGG - chr7.3:24589748-24589767 None:intergenic 25.0%
CCCATTTACAAGAAAAAAGA+AGG + chr7.3:24589745-24589764 MS.gene024275:CDS 30.0%
GCTGAAAGAATTGATATAAG+AGG + chr7.3:24589054-24589073 MS.gene024275:CDS 30.0%
TAAAACACCAATCAAACTTG+AGG - chr7.3:24590402-24590421 None:intergenic 30.0%
TACACTTCTTGAAGAAGTAA+TGG - chr7.3:24589566-24589585 None:intergenic 30.0%
TATTCCTTTATTAGCATACC+CGG + chr7.3:24589602-24589621 MS.gene024275:CDS 30.0%
TTGAAGAAGTAATGGTTCTT+GGG - chr7.3:24589558-24589577 None:intergenic 30.0%
! GGTCTTTTCACAAAATTTAC+TGG + chr7.3:24589516-24589535 MS.gene024275:CDS 30.0%
! TCTTCGAGCAATAAACTTTT+TGG - chr7.3:24589628-24589647 None:intergenic 30.0%
AGAGAATTGTCAACTTCCTA+TGG + chr7.3:24589418-24589437 MS.gene024275:CDS 35.0%
AGTTTATTGCTCGAAGATGA+TGG + chr7.3:24589631-24589650 MS.gene024275:CDS 35.0%
ATCAATCTCGATATTCTGGT+TGG + chr7.3:24589891-24589910 MS.gene024275:CDS 35.0%
ATGATATCAAGCACATCCAT+AGG - chr7.3:24589437-24589456 None:intergenic 35.0%
ATGCTCTAACGAATTTGTCT+TGG + chr7.3:24589835-24589854 MS.gene024275:CDS 35.0%
ATTCGACAATGGAAAAGTCA+GGG + chr7.3:24589921-24589940 MS.gene024275:CDS 35.0%
CAAGCTAAGTACTCCAATAT+TGG - chr7.3:24590002-24590021 None:intergenic 35.0%
CAAGTTTCCTCAAGTTTGAT+TGG + chr7.3:24590392-24590411 MS.gene024275:CDS 35.0%
CTTGAAGAAGTAATGGTTCT+TGG - chr7.3:24589559-24589578 None:intergenic 35.0%
GTCATCGATATCTAGTGTTT+CGG - chr7.3:24589462-24589481 None:intergenic 35.0%
GTCTATCAATCTCGATATTC+TGG + chr7.3:24589887-24589906 MS.gene024275:CDS 35.0%
GTGATACAAAGTAGGGAAAA+CGG + chr7.3:24589382-24589401 MS.gene024275:intron 35.0%
TATTCGACAATGGAAAAGTC+AGG + chr7.3:24589920-24589939 MS.gene024275:CDS 35.0%
TCAAGATATGTGAAGTGCAA+TGG - chr7.3:24589180-24589199 None:intergenic 35.0%
TGAAGTGCAATGGAAAAAGT+AGG - chr7.3:24589170-24589189 None:intergenic 35.0%
TGCACTTGAGTTTCTTCTTA+AGG + chr7.3:24588957-24588976 MS.gene024275:CDS 35.0%
TTGGGTTACTTATTCGACAA+TGG + chr7.3:24589910-24589929 MS.gene024275:CDS 35.0%
! CTGTGATGAACAACTTTTAG+TGG + chr7.3:24590099-24590118 MS.gene024275:CDS 35.0%
! TCAATCTCGATATTCTGGTT+GGG + chr7.3:24589892-24589911 MS.gene024275:CDS 35.0%
!! ATTGATATAAGAGGTGTCCA+AGG + chr7.3:24589063-24589082 MS.gene024275:CDS 35.0%
!! TCTAAGTTTGTTACTTCCAG+AGG - chr7.3:24589786-24589805 None:intergenic 35.0%
AAAAGTAGGAACGAACCAGT+TGG - chr7.3:24589156-24589175 None:intergenic 40.0%
ACAACATGCAGTGTGTATTC+AGG + chr7.3:24590319-24590338 MS.gene024275:CDS 40.0%
ATCACAGCTAACCAACCTAA+GGG - chr7.3:24590086-24590105 None:intergenic 40.0%
ATGAACATCCCTCGAAACAA+TGG + chr7.3:24588925-24588944 MS.gene024275:CDS 40.0%
ATGGAGTACAATATGGGAAG+TGG + chr7.3:24590132-24590151 MS.gene024275:CDS 40.0%
CTCTAACGAATTTGTCTTGG+TGG + chr7.3:24589838-24589857 MS.gene024275:CDS 40.0%
GAAACTCAAGTGCATCATCA+TGG - chr7.3:24588951-24588970 None:intergenic 40.0%
GTCACTCATAAGGCCAATAT+TGG + chr7.3:24589986-24590005 MS.gene024275:CDS 40.0%
TTCTAGCGGTTATTGTGTCA+TGG + chr7.3:24589688-24589707 MS.gene024275:CDS 40.0%
TTGTTATGCATTGAGCAACC+CGG + chr7.3:24590246-24590265 MS.gene024275:CDS 40.0%
! GCATATGTCACTTCTTCTAG+CGG + chr7.3:24589674-24589693 MS.gene024275:CDS 40.0%
! GCATTTGCTAAAAGCAAGCA+AGG - chr7.3:24589819-24589838 None:intergenic 40.0%
! GTTTGTTACTTCCAGAGGTA+GGG - chr7.3:24589781-24589800 None:intergenic 40.0%
! TTGAGGAAACTTGTTCCATG+AGG - chr7.3:24590385-24590404 None:intergenic 40.0%
!! AGTTTGTTACTTCCAGAGGT+AGG - chr7.3:24589782-24589801 None:intergenic 40.0%
!! CGAGCAATAAACTTTTTGGC+CGG - chr7.3:24589624-24589643 None:intergenic 40.0%
!! GAGCAATAAACTTTTTGGCC+GGG - chr7.3:24589623-24589642 None:intergenic 40.0%
AGTAGGGAAAACGGTGAAGA+AGG + chr7.3:24589391-24589410 MS.gene024275:intron 45.0%
CATCACAGCTAACCAACCTA+AGG - chr7.3:24590087-24590106 None:intergenic 45.0%
CATCATGGCCATTGTTTCGA+GGG - chr7.3:24588936-24588955 None:intergenic 45.0%
GACAATGGAAAAGTCAGGGA+GGG + chr7.3:24589925-24589944 MS.gene024275:CDS 45.0%
GACCTGGAAAGTGGTACATT+GGG - chr7.3:24590064-24590083 None:intergenic 45.0%
GATGACCACTTTCAGTTTGC+CGG + chr7.3:24589476-24589495 MS.gene024275:CDS 45.0%
GTAGTCAATTTCCCTACCTC+TGG + chr7.3:24589767-24589786 MS.gene024275:CDS 45.0%
TCATCATGGCCATTGTTTCG+AGG - chr7.3:24588937-24588956 None:intergenic 45.0%
TGCTAAAAGCAAGCAAGGCA+CGG - chr7.3:24589814-24589833 None:intergenic 45.0%
TTGGCCGGGTATGCTAATAA+AGG - chr7.3:24589609-24589628 None:intergenic 45.0%
! AAACTTGTTCCATGAGGAGC+TGG - chr7.3:24590379-24590398 None:intergenic 45.0%
AACCTAAGGGACCTGGAAAG+TGG - chr7.3:24590073-24590092 None:intergenic 50.0%
ACACACCGGCAAACTGAAAG+TGG - chr7.3:24589484-24589503 None:intergenic 50.0%
ACCAGTTGGCATGATGAGGA+AGG - chr7.3:24589142-24589161 None:intergenic 50.0%
ACCTTCCTCATCATGCCAAC+TGG + chr7.3:24589138-24589157 MS.gene024275:CDS 50.0%
ACGAACCAGTTGGCATGATG+AGG - chr7.3:24589146-24589165 None:intergenic 50.0%
ACTTTCCAGGTCCCTTAGGT+TGG + chr7.3:24590072-24590091 MS.gene024275:CDS 50.0%
AGGTGTCCAAGGAAGAGTGA+GGG + chr7.3:24589074-24589093 MS.gene024275:CDS 50.0%
ATTACGCTTCCAGCTCCTCA+TGG + chr7.3:24590367-24590386 MS.gene024275:CDS 50.0%
ATTGAGCAACCCGGACATGT+GGG + chr7.3:24590255-24590274 MS.gene024275:CDS 50.0%
CCTCCAATTCTTGCACACAC+CGG - chr7.3:24589498-24589517 None:intergenic 50.0%
CGACAATGGAAAAGTCAGGG+AGG + chr7.3:24589924-24589943 MS.gene024275:CDS 50.0%
CTCCCAATGTACCACTTTCC+AGG + chr7.3:24590059-24590078 MS.gene024275:CDS 50.0%
CTCTCATATCCCCACATGTC+CGG - chr7.3:24590268-24590287 None:intergenic 50.0%
GGACCTGGAAAGTGGTACAT+TGG - chr7.3:24590065-24590084 None:intergenic 50.0%
GGGAAAACGGTGAAGAAGGT+AGG + chr7.3:24589395-24589414 MS.gene024275:intron 50.0%
TACCACTTTCCAGGTCCCTT+AGG + chr7.3:24590068-24590087 MS.gene024275:CDS 50.0%
TCTCATATCCCCACATGTCC+GGG - chr7.3:24590267-24590286 None:intergenic 50.0%
TTGCCGGTGTGTGCAAGAAT+TGG + chr7.3:24589492-24589511 MS.gene024275:CDS 50.0%
!! AGATGATGGAGTCCCTCGTA+CGG + chr7.3:24589645-24589664 MS.gene024275:CDS 50.0%
!! AGGGAGGGTTGTTGACTTTG+TGG + chr7.3:24589940-24589959 MS.gene024275:CDS 50.0%
AGAGTGAGGGAGCTGCTTCA+AGG + chr7.3:24589087-24589106 MS.gene024275:CDS 55.0%
ATATGCGCACCACCGTACGA+GGG - chr7.3:24589660-24589679 None:intergenic 55.0%
CATTGAGCAACCCGGACATG+TGG + chr7.3:24590254-24590273 MS.gene024275:CDS 55.0%
CCGGTGTGTGCAAGAATTGG+AGG + chr7.3:24589495-24589514 MS.gene024275:CDS 55.0%
GAGCTGCTTCAAGGACATCC+AGG + chr7.3:24589096-24589115 MS.gene024275:CDS 55.0%
GCTAACCAACCTAAGGGACC+TGG - chr7.3:24590080-24590099 None:intergenic 55.0%
TTGAGCAACCCGGACATGTG+GGG + chr7.3:24590256-24590275 MS.gene024275:CDS 55.0%
! GAGGTGTCCAAGGAAGAGTG+AGG + chr7.3:24589073-24589092 MS.gene024275:CDS 55.0%
CATATGCGCACCACCGTACG+AGG - chr7.3:24589661-24589680 None:intergenic 60.0%
GCAGCTCCCTCACTCTTCCT+TGG - chr7.3:24589083-24589102 None:intergenic 60.0%
TGATGGAGTCCCTCGTACGG+TGG + chr7.3:24589648-24589667 MS.gene024275:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 24588925 24590462 24588925 ID=MS.gene024275
chr7.3 mRNA 24588925 24590462 24588925 ID=MS.gene024275.t1;Parent=MS.gene024275
chr7.3 exon 24588925 24589159 24588925 ID=MS.gene024275.t1.exon1;Parent=MS.gene024275.t1
chr7.3 CDS 24588925 24589159 24588925 ID=cds.MS.gene024275.t1;Parent=MS.gene024275.t1
chr7.3 exon 24589396 24590462 24589396 ID=MS.gene024275.t1.exon2;Parent=MS.gene024275.t1
chr7.3 CDS 24589396 24590462 24589396 ID=cds.MS.gene024275.t1;Parent=MS.gene024275.t1
Gene Sequence

>MS.gene024275

ATGAACATCCCTCGAAACAATGGCCATGATGATGCACTTGAGTTTCTTCTTAAGGAAGTCAAACTTGCATGTAAGTATGATAACAAGTTAAAGTATGATGATTTTTTAAAACTCATAAAAGATTTCAAGGCTGAAAGAATTGATATAAGAGGTGTCCAAGGAAGAGTGAGGGAGCTGCTTCAAGGACATCCAGGTTTAATATTCAGATTCAACACCTTCCTCATCATGCCAACTGGTTCGTTCCTACTTTTTCCATTGCACTTCACATATCTTGATACTATATATGTTTCTACTATATGCCTTTACTTTTGCTTTATCTGTTTGTATTCAACCCTTCAATAATTCTACGATCTATTGTTTTTCTTCGTATTATTGTCAGATAAACAATAAAATATCTTATATTTCAAAACTAAATAGAAAAACATAGGTTTAGAAATCACCTAATACTGTTATTGTTGTGATACAAAGTAGGGAAAACGGTGAAGAAGGTAGGAGAGAATTGTCAACTTCCTATGGATGTGCTTGATATCATTTCCGAAACACTAGATATCGATGACCACTTTCAGTTTGCCGGTGTGTGCAAGAATTGGAGGTCTTTTCACAAAATTTACTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTCTTCAAGAAGTGTATCATCCTAGTGTATCATATTCCTTTATTAGCATACCCGGCCAAAAAGTTTATTGCTCGAAGATGATGGAGTCCCTCGTACGGTGGTGCGCATATGTCACTTCTTCTAGCGGTTATTGTGTCATGGCGAATTACCACAATAATTCACTTATTCTAATAAACCCATTTACAAGAAAAAAGAAGGTAGTCAATTTCCCTACCTCTGGAAGTAACAAACTTAGAATTGACCGTGCCTTGCTTGCTTTTAGCAAATGCTCTAACGAATTTGTCTTGGTGGTTTTAATCAAACAATATTGTTTGTATGTCTATCAATCTCGATATTCTGGTTGGGTTACTTATTCGACAATGGAAAAGTCAGGGAGGGTTGTTGACTTTGTGGTTTTGCATAATATAATATATGTTGTCACTCATAAGGCCAATATTGGAGTACTTAGCTTGAATTCTGCAGATATTAGATTTCTAAATTTGAAGAGTACTCCCAATGTACCACTTTCCAGGTCCCTTAGGTTGGTTAGCTGTGATGAACAACTTTTAGTGGTTGATTTAATATGGAGTACAATATGGGAAGTGGATAAGATAGACTTCTCAACCATGAATTATGTCAAAATGAAAACTTTAGGCGACATTGCATTGCTTTATGTTGCGAGTCATTTGCCGAAAAATTGTTATGCATTGAGCAACCCGGACATGTGGGGATATGAGAGCAATTCTATGTATGTCAATGAATATTTTTTTACAACATGCAGTGTGTATTCAGGAGATGATAAACAATTACGAAAATGCATTACGCTTCCAGCTCCTCATGGAACAAGTTTCCTCAAGTTTGATTGGTGTTTTAGACATATACAATCTGAAGTAGATTATTCTCTAGTTGAATAA
Protein sequence

>MS.gene024275.t1

MNIPRNNGHDDALEFLLKEVKLACKYDNKLKYDDFLKLIKDFKAERIDIRGVQGRVRELLQGHPGLIFRFNTFLIMPTGKTVKKVGENCQLPMDVLDIISETLDIDDHFQFAGVCKNWRSFHKIYWRNFLASQEPLLLQEVYHPSVSYSFISIPGQKVYCSKMMESLVRWCAYVTSSSGYCVMANYHNNSLILINPFTRKKKVVNFPTSGSNKLRIDRALLAFSKCSNEFVLVVLIKQYCLYVYQSRYSGWVTYSTMEKSGRVVDFVVLHNIIYVVTHKANIGVLSLNSADIRFLNLKSTPNVPLSRSLRLVSCDEQLLVVDLIWSTIWEVDKIDFSTMNYVKMKTLGDIALLYVASHLPKNCYALSNPDMWGYESNSMYVNEYFFTTCSVYSGDDKQLRKCITLPAPHGTSFLKFDWCFRHIQSEVDYSLVE