Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024343.t1 | PNY07678.1 | 51.4 | 350 | 93 | 3 | 39 | 311 | 2 | 351 | 2.30E-84 | 322.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024343.t1 | A0A2K3NXB6 | 51.4 | 350 | 93 | 3 | 39 | 311 | 2 | 351 | 1.7e-84 | 322.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024343.t1 | MTR_7g070100 | 45.773 | 343 | 108 | 4 | 46 | 311 | 9 | 350 | 1.47e-84 | 258 |
| MS.gene024343.t1 | MTR_3g006100 | 41.834 | 349 | 123 | 6 | 40 | 309 | 3 | 350 | 1.26e-80 | 248 |
| MS.gene024343.t1 | MTR_3g006010 | 41.737 | 357 | 128 | 6 | 31 | 308 | 111 | 466 | 3.45e-79 | 248 |
| MS.gene024343.t1 | MTR_3g006120 | 41.954 | 348 | 122 | 6 | 40 | 308 | 3 | 349 | 3.78e-78 | 242 |
| MS.gene024343.t1 | MTR_4g133490 | 41.739 | 345 | 115 | 8 | 46 | 309 | 7 | 346 | 1.14e-75 | 236 |
| MS.gene024343.t1 | MTR_3g006140 | 39.888 | 356 | 134 | 6 | 34 | 310 | 19 | 373 | 1.69e-75 | 236 |
| MS.gene024343.t1 | MTR_3g006180 | 42.478 | 339 | 115 | 6 | 51 | 310 | 1 | 338 | 4.95e-75 | 234 |
| MS.gene024343.t1 | MTR_4g133320 | 44.840 | 281 | 104 | 7 | 75 | 309 | 31 | 306 | 3.55e-69 | 218 |
| MS.gene024343.t1 | MTR_1g100280 | 42.012 | 338 | 126 | 10 | 36 | 311 | 8 | 337 | 5.38e-69 | 218 |
| MS.gene024343.t1 | MTR_3g045700 | 39.888 | 356 | 124 | 8 | 39 | 311 | 2 | 350 | 3.50e-67 | 214 |
| MS.gene024343.t1 | MTR_1g109340 | 42.230 | 296 | 149 | 4 | 33 | 310 | 63 | 354 | 3.16e-66 | 211 |
| MS.gene024343.t1 | MTR_7g083950 | 38.950 | 362 | 130 | 10 | 33 | 311 | 79 | 432 | 3.88e-63 | 206 |
| MS.gene024343.t1 | MTR_6g091830 | 36.712 | 365 | 142 | 7 | 33 | 311 | 94 | 455 | 1.15e-58 | 195 |
| MS.gene024343.t1 | MTR_3g068220 | 37.255 | 357 | 135 | 8 | 39 | 309 | 2 | 355 | 2.64e-58 | 191 |
| MS.gene024343.t1 | MTR_6g092140 | 36.438 | 365 | 143 | 7 | 33 | 311 | 94 | 455 | 1.27e-57 | 192 |
| MS.gene024343.t1 | MTR_6g088340 | 38.276 | 290 | 124 | 6 | 74 | 311 | 147 | 433 | 3.94e-49 | 169 |
| MS.gene024343.t1 | MTR_6g011110 | 45.045 | 222 | 103 | 7 | 103 | 311 | 62 | 277 | 1.53e-48 | 164 |
| MS.gene024343.t1 | MTR_3g086480 | 43.137 | 204 | 106 | 5 | 103 | 302 | 55 | 252 | 1.75e-42 | 147 |
| MS.gene024343.t1 | MTR_1g109520 | 46.835 | 158 | 79 | 3 | 158 | 310 | 19 | 176 | 4.30e-36 | 128 |
| MS.gene024343.t1 | MTR_1g089620 | 50.360 | 139 | 56 | 3 | 139 | 276 | 34 | 160 | 9.75e-35 | 128 |
| MS.gene024343.t1 | MTR_3g085910 | 34.909 | 275 | 125 | 9 | 46 | 273 | 8 | 275 | 1.46e-33 | 124 |
| MS.gene024343.t1 | MTR_6g023220 | 31.579 | 190 | 121 | 4 | 122 | 307 | 170 | 354 | 6.54e-21 | 92.0 |
| MS.gene024343.t1 | MTR_1g093300 | 48.387 | 93 | 47 | 1 | 141 | 232 | 6 | 98 | 1.46e-19 | 83.6 |
| MS.gene024343.t1 | MTR_6g091850 | 41.584 | 101 | 53 | 2 | 217 | 311 | 1 | 101 | 3.04e-17 | 76.3 |
| MS.gene024343.t1 | MTR_1g012330 | 60.000 | 60 | 24 | 0 | 103 | 162 | 62 | 121 | 1.84e-14 | 72.4 |
| MS.gene024343.t1 | MTR_0128s0040 | 42.708 | 96 | 15 | 1 | 73 | 128 | 41 | 136 | 9.06e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAACAAAATAAATTAT+TGG | 0.204220 | 7.3:+34692377 | MS.gene024343:CDS |
| CCAGAATGTGAAGTGTATTC+AGG | 0.267618 | 7.3:+34692558 | MS.gene024343:CDS |
| CGATGAAGTTGATTATTCTA+TGG | 0.280856 | 7.3:+34692683 | MS.gene024343:CDS |
| AGTAAGTAACTTTGGCAAAA+AGG | 0.295703 | 7.3:-34692328 | None:intergenic |
| CCTGAATACACTTCACATTC+TGG | 0.296027 | 7.3:-34692558 | None:intergenic |
| ATTGCTCAGCGCATGGCATT+TGG | 0.329174 | 7.3:-34692481 | None:intergenic |
| CTTTCATATCCCCACTTTCC+CGG | 0.335775 | 7.3:-34692504 | None:intergenic |
| ATCAGTCTCGATATTCTAGA+TGG | 0.345680 | 7.3:+34692145 | MS.gene024343:CDS |
| CGGAAATCCATGGACTGTTC+TGG | 0.357128 | 7.3:+34692185 | MS.gene024343:CDS |
| AGTCCATGGATTTCCGTGTT+TGG | 0.359414 | 7.3:-34692178 | None:intergenic |
| AAAATCCAGCTTTCGAGATA+TGG | 0.371968 | 7.3:-34691713 | None:intergenic |
| TACACCTATCTCAGCCTTAT+CGG | 0.384690 | 7.3:-34692244 | None:intergenic |
| ATAAATTATTGGACGTCTAC+AGG | 0.413663 | 7.3:+34692388 | MS.gene024343:CDS |
| TTGCTCAGCGCATGGCATTT+GGG | 0.414008 | 7.3:-34692480 | None:intergenic |
| CCAAAGTTACTTACTTGTGA+TGG | 0.415525 | 7.3:+34692336 | MS.gene024343:CDS |
| AGCCAATACAGTTGTGATCT+AGG | 0.419217 | 7.3:-34692636 | None:intergenic |
| TTATGTCAAGCTAGAAACTT+TGG | 0.427927 | 7.3:+34692431 | MS.gene024343:CDS |
| TGCCATGCGCTGAGCAATCC+GGG | 0.435971 | 7.3:+34692486 | MS.gene024343:CDS |
| ATGCCATGCGCTGAGCAATC+CGG | 0.444798 | 7.3:+34692485 | MS.gene024343:CDS |
| CCATCACAAGTAAGTAACTT+TGG | 0.447007 | 7.3:-34692336 | None:intergenic |
| TATTTATGTTCTCACCGATA+AGG | 0.448466 | 7.3:+34692230 | MS.gene024343:CDS |
| CTCCTAGATCACAACTGTAT+TGG | 0.458229 | 7.3:+34692634 | MS.gene024343:CDS |
| CGCTGAGCAATCCGGGAAAG+TGG | 0.475761 | 7.3:+34692493 | MS.gene024343:CDS |
| TATGTCAAGCTAGAAACTTT+GGG | 0.484550 | 7.3:+34692432 | MS.gene024343:CDS |
| CAGAATGTGAAGTGTATTCA+GGG | 0.493079 | 7.3:+34692559 | MS.gene024343:CDS |
| CACAACTGTATTGGCTGGAT+TGG | 0.493429 | 7.3:+34692643 | MS.gene024343:CDS |
| CTCACCGATAAGGCTGAGAT+AGG | 0.500858 | 7.3:+34692240 | MS.gene024343:CDS |
| AAGAGGTCTAATGTTTCCAA+TGG | 0.501547 | 7.3:+34689544 | MS.gene024343:CDS |
| ACCTATCTGTGTTCGTCTAG+TGG | 0.505239 | 7.3:+34691928 | MS.gene024343:CDS |
| TAGATCACAACTGTATTGGC+TGG | 0.505287 | 7.3:+34692638 | MS.gene024343:CDS |
| TTCCCGGATTGCTCAGCGCA+TGG | 0.514964 | 7.3:-34692488 | None:intergenic |
| CAAAGTTACTTACTTGTGAT+GGG | 0.516336 | 7.3:+34692337 | MS.gene024343:CDS |
| CGATGATTGAGGCAATCCAT+TGG | 0.517549 | 7.3:-34689560 | None:intergenic |
| GGAAGTCGATGACTATCAGC+TGG | 0.538497 | 7.3:-34692612 | None:intergenic |
| TCCACTAGACGAACACAGAT+AGG | 0.539372 | 7.3:-34691929 | None:intergenic |
| TGATACCATATCTCGAAAGC+TGG | 0.547494 | 7.3:+34691708 | MS.gene024343:CDS |
| TTGTGATGGGAAGCTTCTTG+TGG | 0.555728 | 7.3:+34692350 | MS.gene024343:CDS |
| TCAGTCTCGATATTCTAGAT+GGG | 0.573197 | 7.3:+34692146 | MS.gene024343:CDS |
| ACAAAGTCCAGAACAGTCCA+TGG | 0.574980 | 7.3:-34692192 | None:intergenic |
| GCTGAGCAATCCGGGAAAGT+GGG | 0.577558 | 7.3:+34692494 | MS.gene024343:CDS |
| ATTCCAAACACGGAAATCCA+TGG | 0.590954 | 7.3:+34692175 | MS.gene024343:CDS |
| GTGACGAGGATGATTCTAAG+AGG | 0.595467 | 7.3:+34689527 | MS.gene024343:CDS |
| AGTGGATATCTCATCATGAA+AGG | 0.600961 | 7.3:+34691946 | MS.gene024343:CDS |
| CTCACAAAGAATTCAGAGCA+AGG | 0.609873 | 7.3:+34689502 | MS.gene024343:CDS |
| CTGAGCAATCCGGGAAAGTG+GGG | 0.636096 | 7.3:+34692495 | MS.gene024343:CDS |
| TTCAGAGCAAGGGAGTGACG+AGG | 0.645792 | 7.3:+34689513 | MS.gene024343:CDS |
| TCACAAAGAATTCAGAGCAA+GGG | 0.646539 | 7.3:+34689503 | MS.gene024343:CDS |
| TGGGTTACTTATTCCAAACA+CGG | 0.657134 | 7.3:+34692165 | MS.gene024343:CDS |
| TTCAAATGAATACGTCGTAG+TGG | 0.661178 | 7.3:+34692089 | MS.gene024343:CDS |
| ACCGTACTTGACGATGATTG+AGG | 0.664038 | 7.3:-34689571 | None:intergenic |
| CAATACAGTTGTGATCTAGG+AGG | 0.698754 | 7.3:-34692633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGAATTAGAAATTA+TGG | - | chr7.3:34690354-34690373 | None:intergenic | 10.0% |
| !! | ATTCATTAATTGTAGTTTAT+TGG | - | chr7.3:34691974-34691993 | None:intergenic | 15.0% |
| !! | CTTTGAACAAAATAAATTAT+TGG | + | chr7.3:34692377-34692396 | MS.gene024343:CDS | 15.0% |
| !!! | AGTTTATTCTTTTTTCTTTT+CGG | + | chr7.3:34690426-34690445 | MS.gene024343:intron | 15.0% |
| !!! | ATCATTTGTTTTCTTATAAA+TGG | - | chr7.3:34691997-34692016 | None:intergenic | 15.0% |
| !!! | TATATAAATGCAATTTTAGT+GGG | - | chr7.3:34690717-34690736 | None:intergenic | 15.0% |
| !!! | TGAAGTATTACATATTTTTA+GGG | + | chr7.3:34690383-34690402 | MS.gene024343:intron | 15.0% |
| !! | AAGAAAAAAGAATAAACTGA+AGG | - | chr7.3:34690424-34690443 | None:intergenic | 20.0% |
| !! | ATAATAGAATATAAACCCAT+GGG | - | chr7.3:34691004-34691023 | None:intergenic | 20.0% |
| !! | ATAGATGATTAAATTGATGT+TGG | - | chr7.3:34691144-34691163 | None:intergenic | 20.0% |
| !! | ATATAAAGAAGCCAAAAAAT+AGG | + | chr7.3:34690587-34690606 | MS.gene024343:intron | 20.0% |
| !! | GAAAAAACTACAAAACTAAA+TGG | + | chr7.3:34690473-34690492 | MS.gene024343:intron | 20.0% |
| !! | TATAATAGAATATAAACCCA+TGG | - | chr7.3:34691005-34691024 | None:intergenic | 20.0% |
| !!! | ATATAAATGCAATTTTAGTG+GGG | - | chr7.3:34690716-34690735 | None:intergenic | 20.0% |
| !!! | ATCTAAAATTCACTTATACA+TGG | - | chr7.3:34690743-34690762 | None:intergenic | 20.0% |
| !!! | GCACTTTTATTATTAACATT+GGG | + | chr7.3:34691606-34691625 | MS.gene024343:intron | 20.0% |
| !!! | GTATATAAATGCAATTTTAG+TGG | - | chr7.3:34690718-34690737 | None:intergenic | 20.0% |
| !!! | GTGAAGTATTACATATTTTT+AGG | + | chr7.3:34690382-34690401 | MS.gene024343:intron | 20.0% |
| !!! | TAGTTTTGTAGTTTTTTCTT+TGG | - | chr7.3:34690471-34690490 | None:intergenic | 20.0% |
| !!! | TCTTACAATTAAATTTTGTG+TGG | + | chr7.3:34690001-34690020 | MS.gene024343:intron | 20.0% |
| !!! | TGCACTTTTATTATTAACAT+TGG | + | chr7.3:34691605-34691624 | MS.gene024343:intron | 20.0% |
| !!! | TTACATGATTGTTTTAGATT+GGG | + | chr7.3:34689911-34689930 | MS.gene024343:intron | 20.0% |
| !!! | TTAGTTTTGTCATAATATGA+GGG | - | chr7.3:34690639-34690658 | None:intergenic | 20.0% |
| !!! | TTTACATGATTGTTTTAGAT+TGG | + | chr7.3:34689910-34689929 | MS.gene024343:intron | 20.0% |
| !!! | TTTAGTTTTGTCATAATATG+AGG | - | chr7.3:34690640-34690659 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATATCATATAGA+TGG | + | chr7.3:34691407-34691426 | MS.gene024343:intron | 20.0% |
| ! | AAAACTAAATGGACATTGTT+AGG | + | chr7.3:34690484-34690503 | MS.gene024343:intron | 25.0% |
| ! | AACGTAATGCTTATAATTAG+TGG | + | chr7.3:34690285-34690304 | MS.gene024343:intron | 25.0% |
| ! | AAGAAATATGATACTTGCAA+GGG | - | chr7.3:34690933-34690952 | None:intergenic | 25.0% |
| ! | AATTTATTGGAGAAGTTTCA+TGG | + | chr7.3:34691789-34691808 | MS.gene024343:intron | 25.0% |
| ! | ACAATCTCATGAAACAATAT+AGG | - | chr7.3:34689720-34689739 | None:intergenic | 25.0% |
| ! | ACGTAATGCTTATAATTAGT+GGG | + | chr7.3:34690286-34690305 | MS.gene024343:intron | 25.0% |
| ! | ACTAATTATAAGCATTACGT+TGG | - | chr7.3:34690286-34690305 | None:intergenic | 25.0% |
| ! | AGTTGCAATTATAGTGAATA+GGG | - | chr7.3:34690173-34690192 | None:intergenic | 25.0% |
| ! | ATCAACCATCTATATGATAT+TGG | - | chr7.3:34691415-34691434 | None:intergenic | 25.0% |
| ! | GAAATGAGAAAAATAATGCA+AGG | - | chr7.3:34692461-34692480 | None:intergenic | 25.0% |
| ! | GGAGAGTTCAAAAAATTTAT+TGG | + | chr7.3:34691776-34691795 | MS.gene024343:intron | 25.0% |
| ! | TAAGAAATATGATACTTGCA+AGG | - | chr7.3:34690934-34690953 | None:intergenic | 25.0% |
| ! | TAATAGAATATAAACCCATG+GGG | - | chr7.3:34691003-34691022 | None:intergenic | 25.0% |
| ! | TAATATCATAGAAAATCGTG+AGG | - | chr7.3:34691561-34691580 | None:intergenic | 25.0% |
| ! | TAGTTGCAATTATAGTGAAT+AGG | - | chr7.3:34690174-34690193 | None:intergenic | 25.0% |
| ! | TTCAACAAAGTAAAACAATG+CGG | - | chr7.3:34689849-34689868 | None:intergenic | 25.0% |
| !! | TCAAAGATTTATGGGTTTTA+TGG | + | chr7.3:34691367-34691386 | MS.gene024343:intron | 25.0% |
| !! | TTGAGCCAATATTTTCAAAT+TGG | + | chr7.3:34691436-34691455 | MS.gene024343:intron | 25.0% |
| !!! | AGTCATTTTTGGTATTAGAT+TGG | - | chr7.3:34690667-34690686 | None:intergenic | 25.0% |
| !!! | GAAGATTATTTTTGTCGTTA+CGG | + | chr7.3:34692036-34692055 | MS.gene024343:intron | 25.0% |
| !!! | GCTTGTTTTAAATTTCTGAA+GGG | - | chr7.3:34690884-34690903 | None:intergenic | 25.0% |
| !!! | GTATTACTTACTTTTGTCAA+AGG | + | chr7.3:34692066-34692085 | MS.gene024343:intron | 25.0% |
| !!! | TAATTTTAACCTATCAGTCA+TGG | - | chr7.3:34689811-34689830 | None:intergenic | 25.0% |
| !!! | TATGGGTTTTATGGATTTAT+GGG | + | chr7.3:34691376-34691395 | MS.gene024343:intron | 25.0% |
| !!! | TTATGGGTTTTATGGATTTA+TGG | + | chr7.3:34691375-34691394 | MS.gene024343:intron | 25.0% |
| !!! | TTGATGTTGGAATTATTTTG+AGG | - | chr7.3:34691131-34691150 | None:intergenic | 25.0% |
| AAAAATAACTCATCTTAGCG+TGG | - | chr7.3:34691900-34691919 | None:intergenic | 30.0% | |
| AAAATAATCTTCAATTGCCG+AGG | - | chr7.3:34692028-34692047 | None:intergenic | 30.0% | |
| AATGATGACACTTGTATTGT+TGG | - | chr7.3:34691100-34691119 | None:intergenic | 30.0% | |
| AATTATAGTGAATAGGGGAA+GGG | - | chr7.3:34690167-34690186 | None:intergenic | 30.0% | |
| ACAAAAGTAAGTAATACACG+AGG | - | chr7.3:34692063-34692082 | None:intergenic | 30.0% | |
| ACCACAATGAAAAACAATTC+TGG | - | chr7.3:34691484-34691503 | None:intergenic | 30.0% | |
| ACCTAAATCTTGTAATGTGT+GGG | - | chr7.3:34690095-34690114 | None:intergenic | 30.0% | |
| AGCAGAACTTCAAAGATTTA+TGG | + | chr7.3:34691358-34691377 | MS.gene024343:intron | 30.0% | |
| AGTAAGTAACTTTGGCAAAA+AGG | - | chr7.3:34692331-34692350 | None:intergenic | 30.0% | |
| ATAAATTATTGGACGTCTAC+AGG | + | chr7.3:34692388-34692407 | MS.gene024343:CDS | 30.0% | |
| ATTACTTAGGCTATGTCTTT+AGG | - | chr7.3:34689965-34689984 | None:intergenic | 30.0% | |
| ATTGTTGGAAATCAAAGTAG+AGG | - | chr7.3:34691085-34691104 | None:intergenic | 30.0% | |
| CAAAGTTACTTACTTGTGAT+GGG | + | chr7.3:34692337-34692356 | MS.gene024343:CDS | 30.0% | |
| CACCACCAATTTGAAAATAT+TGG | - | chr7.3:34691444-34691463 | None:intergenic | 30.0% | |
| GATGGATCAAAAGTTACATT+AGG | - | chr7.3:34690860-34690879 | None:intergenic | 30.0% | |
| GCAGAACTTCAAAGATTTAT+GGG | + | chr7.3:34691359-34691378 | MS.gene024343:intron | 30.0% | |
| GTTCTTTCCTATCAAAACTA+AGG | + | chr7.3:34690787-34690806 | MS.gene024343:intron | 30.0% | |
| GTTGCAATTATAGTGAATAG+GGG | - | chr7.3:34690172-34690191 | None:intergenic | 30.0% | |
| TATACATACAACAACATGAC+AGG | - | chr7.3:34689656-34689675 | None:intergenic | 30.0% | |
| TATGTCAAGCTAGAAACTTT+GGG | + | chr7.3:34692432-34692451 | MS.gene024343:CDS | 30.0% | |
| TATTTATGTTCTCACCGATA+AGG | + | chr7.3:34692230-34692249 | MS.gene024343:CDS | 30.0% | |
| TATTTCAAGCATCAACTAGA+TGG | + | chr7.3:34691325-34691344 | MS.gene024343:intron | 30.0% | |
| TCACTATAATTGCAACTACT+TGG | + | chr7.3:34690176-34690195 | MS.gene024343:intron | 30.0% | |
| TTATGTCAAGCTAGAAACTT+TGG | + | chr7.3:34692431-34692450 | MS.gene024343:CDS | 30.0% | |
| TTGGCTTCTTTATATTCCTT+TGG | - | chr7.3:34690582-34690601 | None:intergenic | 30.0% | |
| TTTACCTGAAACAATGACAA+TGG | - | chr7.3:34691641-34691660 | None:intergenic | 30.0% | |
| ! | AGCCAATATTTTCAAATTGG+TGG | + | chr7.3:34691439-34691458 | MS.gene024343:intron | 30.0% |
| ! | CAATTCTGGTTATTCATCTA+TGG | - | chr7.3:34691470-34691489 | None:intergenic | 30.0% |
| ! | CGATGAAGTTGATTATTCTA+TGG | + | chr7.3:34692683-34692702 | MS.gene024343:CDS | 30.0% |
| ! | GTTTGATTGTTTCTTTGTGT+GGG | + | chr7.3:34691184-34691203 | MS.gene024343:intron | 30.0% |
| ! | TTCATTTTACGATATGTCCA+GGG | - | chr7.3:34690518-34690537 | None:intergenic | 30.0% |
| ! | TTTAAATTTCTGAAGGGAGA+TGG | - | chr7.3:34690878-34690897 | None:intergenic | 30.0% |
| ! | TTTCTTTTCGGTACAAAAGA+GGG | + | chr7.3:34690438-34690457 | MS.gene024343:intron | 30.0% |
| ! | TTTTCTTTTCGGTACAAAAG+AGG | + | chr7.3:34690437-34690456 | MS.gene024343:intron | 30.0% |
| !! | ACCAGAATTGTTTTTCATTG+TGG | + | chr7.3:34691480-34691499 | MS.gene024343:intron | 30.0% |
| !! | ACGCTAAGATGAGTTATTTT+TGG | + | chr7.3:34691899-34691918 | MS.gene024343:CDS | 30.0% |
| !! | TGTGGCATATTAGTCATTTT+TGG | - | chr7.3:34690678-34690697 | None:intergenic | 30.0% |
| !!! | CGCTAAGATGAGTTATTTTT+GGG | + | chr7.3:34691900-34691919 | MS.gene024343:CDS | 30.0% |
| !!! | GCTAAGATGAGTTATTTTTG+GGG | + | chr7.3:34691901-34691920 | MS.gene024343:CDS | 30.0% |
| !!! | GGCTTGTTTTAAATTTCTGA+AGG | - | chr7.3:34690885-34690904 | None:intergenic | 30.0% |
| AAAATCCAGCTTTCGAGATA+TGG | - | chr7.3:34691716-34691735 | None:intergenic | 35.0% | |
| AAATATGATACTTGCAAGGG+AGG | - | chr7.3:34690930-34690949 | None:intergenic | 35.0% | |
| AAGAGGTCTAATGTTTCCAA+TGG | + | chr7.3:34689544-34689563 | MS.gene024343:CDS | 35.0% | |
| AAGCCAAATGAGCATTACTT+AGG | - | chr7.3:34689978-34689997 | None:intergenic | 35.0% | |
| ACCCACACATTACAAGATTT+AGG | + | chr7.3:34690091-34690110 | MS.gene024343:intron | 35.0% | |
| AGTAACTTTGGCAAAAAGGA+TGG | - | chr7.3:34692327-34692346 | None:intergenic | 35.0% | |
| AGTCTATGAATCTCACTATG+AGG | + | chr7.3:34690537-34690556 | MS.gene024343:intron | 35.0% | |
| AGTGGATATCTCATCATGAA+AGG | + | chr7.3:34691946-34691965 | MS.gene024343:CDS | 35.0% | |
| ATCAGTCTCGATATTCTAGA+TGG | + | chr7.3:34692145-34692164 | MS.gene024343:CDS | 35.0% | |
| CAATTATAGTGAATAGGGGA+AGG | - | chr7.3:34690168-34690187 | None:intergenic | 35.0% | |
| CACCTAAATCTTGTAATGTG+TGG | - | chr7.3:34690096-34690115 | None:intergenic | 35.0% | |
| CAGAATGTGAAGTGTATTCA+GGG | + | chr7.3:34692559-34692578 | MS.gene024343:CDS | 35.0% | |
| CCAAAGTTACTTACTTGTGA+TGG | + | chr7.3:34692336-34692355 | MS.gene024343:CDS | 35.0% | |
| CCATCACAAGTAAGTAACTT+TGG | - | chr7.3:34692339-34692358 | None:intergenic | 35.0% | |
| CTAATATGCCACACCAAAAA+CGG | + | chr7.3:34690685-34690704 | MS.gene024343:intron | 35.0% | |
| CTCAACATTAGTACAACCAA+AGG | + | chr7.3:34690563-34690582 | MS.gene024343:intron | 35.0% | |
| CTCAACTGAGTCTGTAAATA+AGG | - | chr7.3:34691235-34691254 | None:intergenic | 35.0% | |
| CTTATTTACAGACTCAGTTG+AGG | + | chr7.3:34691233-34691252 | MS.gene024343:intron | 35.0% | |
| CTTTGGTTGTACTAATGTTG+AGG | - | chr7.3:34690565-34690584 | None:intergenic | 35.0% | |
| GAACTGAAAAATATGCCCAA+TGG | + | chr7.3:34692300-34692319 | MS.gene024343:CDS | 35.0% | |
| GAAGTTGTTTGAACAAGTAG+TGG | - | chr7.3:34691826-34691845 | None:intergenic | 35.0% | |
| GGAGAGATGTAATGATTATG+AGG | - | chr7.3:34690906-34690925 | None:intergenic | 35.0% | |
| GTGTTTATTCCCAAATATCC+TGG | + | chr7.3:34690252-34690271 | MS.gene024343:intron | 35.0% | |
| TAGCCTAAGTAATGCTCATT+TGG | + | chr7.3:34689972-34689991 | MS.gene024343:intron | 35.0% | |
| TCACAAAGAATTCAGAGCAA+GGG | + | chr7.3:34689503-34689522 | MS.gene024343:CDS | 35.0% | |
| TCAGTCTCGATATTCTAGAT+GGG | + | chr7.3:34692146-34692165 | MS.gene024343:CDS | 35.0% | |
| TCATAGAAAATCGTGAGGTA+AGG | - | chr7.3:34691556-34691575 | None:intergenic | 35.0% | |
| TCCCAAATATCCTGGAAATA+AGG | + | chr7.3:34690260-34690279 | MS.gene024343:intron | 35.0% | |
| TGGGTTACTTATTCCAAACA+CGG | + | chr7.3:34692165-34692184 | MS.gene024343:CDS | 35.0% | |
| TTACATGACTGTCGCATAAA+AGG | + | chr7.3:34689884-34689903 | MS.gene024343:intron | 35.0% | |
| TTCAAATGAATACGTCGTAG+TGG | + | chr7.3:34692089-34692108 | MS.gene024343:CDS | 35.0% | |
| TTTAGATTGGGTGTTAGCTA+GGG | + | chr7.3:34689923-34689942 | MS.gene024343:intron | 35.0% | |
| TTTGAACAAGTAGTGGTGAT+TGG | - | chr7.3:34691819-34691838 | None:intergenic | 35.0% | |
| ! | ACTTTTCATGCCGAAATCTA+GGG | - | chr7.3:34690819-34690838 | None:intergenic | 35.0% |
| ! | CGTTTGATTGTTTCTTTGTG+TGG | + | chr7.3:34691183-34691202 | MS.gene024343:intron | 35.0% |
| ! | CTTCATTTTACGATATGTCC+AGG | - | chr7.3:34690519-34690538 | None:intergenic | 35.0% |
| ! | GACGGTCTATTTCAATTTTC+TGG | + | chr7.3:34691736-34691755 | MS.gene024343:CDS | 35.0% |
| ! | TATGACGTTTTGCACTATTG+AGG | + | chr7.3:34691283-34691302 | MS.gene024343:intron | 35.0% |
| ! | TTCTGGTTATTCATCTATGG+TGG | - | chr7.3:34691467-34691486 | None:intergenic | 35.0% |
| ! | TTTTAGATTGGGTGTTAGCT+AGG | + | chr7.3:34689922-34689941 | MS.gene024343:intron | 35.0% |
| !! | GCCTTATTTCCAGGATATTT+GGG | - | chr7.3:34690264-34690283 | None:intergenic | 35.0% |
| !! | TCAATTTTCTGGTGTTTGCA+AGG | + | chr7.3:34691747-34691766 | MS.gene024343:CDS | 35.0% |
| !!! | ACCTTACAAACTGGTTTTGT+GGG | + | chr7.3:34690317-34690336 | MS.gene024343:intron | 35.0% |
| !!! | GCATGTACCTTAGTTTTGAT+AGG | - | chr7.3:34690797-34690816 | None:intergenic | 35.0% |
| !!! | TGATTGGCTAGCCTATTTTT+TGG | - | chr7.3:34690601-34690620 | None:intergenic | 35.0% |
| AACATTACCCCTCATGTACA+CGG | - | chr7.3:34690124-34690143 | None:intergenic | 40.0% | |
| AAGGTACATGCCCTAGATTT+CGG | + | chr7.3:34690806-34690825 | MS.gene024343:intron | 40.0% | |
| ACAAATGATCGTTGACACCT+CGG | + | chr7.3:34692008-34692027 | MS.gene024343:intron | 40.0% | |
| ACCAATATAGATAGTCCCCA+TGG | + | chr7.3:34690985-34691004 | MS.gene024343:intron | 40.0% | |
| ACCATCTTAGATATGCGATC+AGG | - | chr7.3:34690039-34690058 | None:intergenic | 40.0% | |
| AGCCAATACAGTTGTGATCT+AGG | - | chr7.3:34692639-34692658 | None:intergenic | 40.0% | |
| ATTCCAAACACGGAAATCCA+TGG | + | chr7.3:34692175-34692194 | MS.gene024343:CDS | 40.0% | |
| CAATACAGTTGTGATCTAGG+AGG | - | chr7.3:34692636-34692655 | None:intergenic | 40.0% | |
| CATTGCACCCAGAATAATGA+AGG | - | chr7.3:34690228-34690247 | None:intergenic | 40.0% | |
| CCAATATAGATAGTCCCCAT+GGG | + | chr7.3:34690986-34691005 | MS.gene024343:intron | 40.0% | |
| CCAGAATGTGAAGTGTATTC+AGG | + | chr7.3:34692558-34692577 | MS.gene024343:CDS | 40.0% | |
| CCTACCATTGTCATTGTTTC+AGG | + | chr7.3:34691634-34691653 | MS.gene024343:intron | 40.0% | |
| CCTGAAACAATGACAATGGT+AGG | - | chr7.3:34691637-34691656 | None:intergenic | 40.0% | |
| CCTGAATACACTTCACATTC+TGG | - | chr7.3:34692561-34692580 | None:intergenic | 40.0% | |
| CTCACAAAGAATTCAGAGCA+AGG | + | chr7.3:34689502-34689521 | MS.gene024343:CDS | 40.0% | |
| CTCCTAGATCACAACTGTAT+TGG | + | chr7.3:34692634-34692653 | MS.gene024343:CDS | 40.0% | |
| GCATTTCTCACCTTACAAAC+TGG | + | chr7.3:34690308-34690327 | MS.gene024343:intron | 40.0% | |
| TCATTATTCTGGGTGCAATG+AGG | + | chr7.3:34690228-34690247 | MS.gene024343:intron | 40.0% | |
| TCCTGATCGCATATCTAAGA+TGG | + | chr7.3:34690035-34690054 | MS.gene024343:intron | 40.0% | |
| TGATACCATATCTCGAAAGC+TGG | + | chr7.3:34691708-34691727 | MS.gene024343:CDS | 40.0% | |
| TTAGATTGGGTGTTAGCTAG+GGG | + | chr7.3:34689924-34689943 | MS.gene024343:intron | 40.0% | |
| TTCTTTGTGTGGGATTGTGA+TGG | + | chr7.3:34691194-34691213 | MS.gene024343:intron | 40.0% | |
| ! | CACTTTTCATGCCGAAATCT+AGG | - | chr7.3:34690820-34690839 | None:intergenic | 40.0% |
| ! | TACACCTATCTCAGCCTTAT+CGG | - | chr7.3:34692247-34692266 | None:intergenic | 40.0% |
| ! | TAGATCACAACTGTATTGGC+TGG | + | chr7.3:34692638-34692657 | MS.gene024343:CDS | 40.0% |
| ! | TCTCGAAAGCTGGATTTTGA+CGG | + | chr7.3:34691718-34691737 | MS.gene024343:CDS | 40.0% |
| !! | ATTACGTTGGCCTTATTTCC+AGG | - | chr7.3:34690273-34690292 | None:intergenic | 40.0% |
| !! | GAAGAACCCAAAGTGTTGAT+TGG | - | chr7.3:34690617-34690636 | None:intergenic | 40.0% |
| !! | GGCCTTATTTCCAGGATATT+TGG | - | chr7.3:34690265-34690284 | None:intergenic | 40.0% |
| !! | TAGTGGGGTATTTCCGTTTT+TGG | - | chr7.3:34690701-34690720 | None:intergenic | 40.0% |
| !!! | CACCTTACAAACTGGTTTTG+TGG | + | chr7.3:34690316-34690335 | MS.gene024343:intron | 40.0% |
| !!! | CCTTACAAACTGGTTTTGTG+GGG | + | chr7.3:34690318-34690337 | MS.gene024343:intron | 40.0% |
| AACTGAAGGCAAGCATGACA+TGG | - | chr7.3:34690410-34690429 | None:intergenic | 45.0% | |
| ACAAAGTCCAGAACAGTCCA+TGG | - | chr7.3:34692195-34692214 | None:intergenic | 45.0% | |
| ACCGTACTTGACGATGATTG+AGG | - | chr7.3:34689574-34689593 | None:intergenic | 45.0% | |
| ACCTATCTGTGTTCGTCTAG+TGG | + | chr7.3:34691928-34691947 | MS.gene024343:CDS | 45.0% | |
| ACTACTTGGAGCTTCCTTCA+TGG | + | chr7.3:34690190-34690209 | MS.gene024343:intron | 45.0% | |
| AGTCCATGGATTTCCGTGTT+TGG | - | chr7.3:34692181-34692200 | None:intergenic | 45.0% | |
| CCCATGGGGACTATCTATAT+TGG | - | chr7.3:34690989-34691008 | None:intergenic | 45.0% | |
| CCCCACAAAACCAGTTTGTA+AGG | - | chr7.3:34690321-34690340 | None:intergenic | 45.0% | |
| CGATGATTGAGGCAATCCAT+TGG | - | chr7.3:34689563-34689582 | None:intergenic | 45.0% | |
| CTTTCATATCCCCACTTTCC+CGG | - | chr7.3:34692507-34692526 | None:intergenic | 45.0% | |
| GCCTCAATCATCGTCAAGTA+CGG | + | chr7.3:34689570-34689589 | MS.gene024343:intron | 45.0% | |
| GGCAAAAAGGATGGTCCATT+GGG | - | chr7.3:34692318-34692337 | None:intergenic | 45.0% | |
| GTAGTTGAGCCATGACTGAT+AGG | + | chr7.3:34689799-34689818 | MS.gene024343:intron | 45.0% | |
| GTGACGAGGATGATTCTAAG+AGG | + | chr7.3:34689527-34689546 | MS.gene024343:CDS | 45.0% | |
| TAAGCTTCATCCATCCACCA+GGG | + | chr7.3:34690952-34690971 | MS.gene024343:intron | 45.0% | |
| TATGATACTTGCAAGGGAGG+TGG | - | chr7.3:34690927-34690946 | None:intergenic | 45.0% | |
| TCCACCGCCTTCATTATTCT+GGG | + | chr7.3:34690218-34690237 | MS.gene024343:intron | 45.0% | |
| TCCACTAGACGAACACAGAT+AGG | - | chr7.3:34691932-34691951 | None:intergenic | 45.0% | |
| TGCACCCAGAATAATGAAGG+CGG | - | chr7.3:34690225-34690244 | None:intergenic | 45.0% | |
| TGGCAAAAAGGATGGTCCAT+TGG | - | chr7.3:34692319-34692338 | None:intergenic | 45.0% | |
| TTAAGCTTCATCCATCCACC+AGG | + | chr7.3:34690951-34690970 | MS.gene024343:intron | 45.0% | |
| ! | AGGCTAGCCAATCAACACTT+TGG | + | chr7.3:34690607-34690626 | MS.gene024343:intron | 45.0% |
| ! | ATAGGGGAAGGGCACAATTA+AGG | - | chr7.3:34690156-34690175 | None:intergenic | 45.0% |
| ! | GGCTAGCCAATCAACACTTT+GGG | + | chr7.3:34690608-34690627 | MS.gene024343:intron | 45.0% |
| ! | TTGTGATGGGAAGCTTCTTG+TGG | + | chr7.3:34692350-34692369 | MS.gene024343:CDS | 45.0% |
| ! | TTTCTGGTGTTTGCAAGGAG+TGG | + | chr7.3:34691752-34691771 | MS.gene024343:intron | 45.0% |
| !! | CACAACTGTATTGGCTGGAT+TGG | + | chr7.3:34692643-34692662 | MS.gene024343:CDS | 45.0% |
| !! | TATTGGTTCTAAGAGACCCC+TGG | - | chr7.3:34690972-34690991 | None:intergenic | 45.0% |
| !!! | ACAAACTGGTTTTGTGGGGT+TGG | + | chr7.3:34690322-34690341 | MS.gene024343:intron | 45.0% |
| !!! | CAAACTGGTTTTGTGGGGTT+GGG | + | chr7.3:34690323-34690342 | MS.gene024343:intron | 45.0% |
| !!! | GGGTATTTCCGTTTTTGGTG+TGG | - | chr7.3:34690696-34690715 | None:intergenic | 45.0% |
| !! | TTGAAAAAAAAATATAAATT+AGG | + | chr7.3:34689760-34689779 | MS.gene024343:intron | 5.0% |
| AAGCTTCATCCATCCACCAG+GGG | + | chr7.3:34690953-34690972 | MS.gene024343:intron | 50.0% | |
| ACCCAGAATAATGAAGGCGG+TGG | - | chr7.3:34690222-34690241 | None:intergenic | 50.0% | |
| ATTGCTCAGCGCATGGCATT+TGG | - | chr7.3:34692484-34692503 | None:intergenic | 50.0% | |
| ATTGTTAGGCATGCAAGCCC+TGG | + | chr7.3:34690498-34690517 | MS.gene024343:intron | 50.0% | |
| CAGAATAATGAAGGCGGTGG+AGG | - | chr7.3:34690219-34690238 | None:intergenic | 50.0% | |
| CTCACCGATAAGGCTGAGAT+AGG | + | chr7.3:34692240-34692259 | MS.gene024343:CDS | 50.0% | |
| CTCCACCGCCTTCATTATTC+TGG | + | chr7.3:34690217-34690236 | MS.gene024343:intron | 50.0% | |
| GGAAGTCGATGACTATCAGC+TGG | - | chr7.3:34692615-34692634 | None:intergenic | 50.0% | |
| GTGCAAAGCCGTGTACATGA+GGG | + | chr7.3:34690113-34690132 | MS.gene024343:intron | 50.0% | |
| TGCAAAGCCGTGTACATGAG+GGG | + | chr7.3:34690114-34690133 | MS.gene024343:intron | 50.0% | |
| TTGCTCAGCGCATGGCATTT+GGG | - | chr7.3:34692483-34692502 | None:intergenic | 50.0% | |
| ! | CGGAAATCCATGGACTGTTC+TGG | + | chr7.3:34692185-34692204 | MS.gene024343:CDS | 50.0% |
| !! | GCGTGGTAAGCTCGTTTTTC+AGG | - | chr7.3:34691883-34691902 | None:intergenic | 50.0% |
| ATGCCATGCGCTGAGCAATC+CGG | + | chr7.3:34692485-34692504 | MS.gene024343:CDS | 55.0% | |
| CTGAGCAATCCGGGAAAGTG+GGG | + | chr7.3:34692495-34692514 | MS.gene024343:CDS | 55.0% | |
| CTGGTGTTTGCAAGGAGTGG+AGG | + | chr7.3:34691755-34691774 | MS.gene024343:intron | 55.0% | |
| GCTGAGCAATCCGGGAAAGT+GGG | + | chr7.3:34692494-34692513 | MS.gene024343:CDS | 55.0% | |
| GGTGCAAAGCCGTGTACATG+AGG | + | chr7.3:34690112-34690131 | MS.gene024343:intron | 55.0% | |
| TCTAAGAGACCCCTGGTGGA+TGG | - | chr7.3:34690965-34690984 | None:intergenic | 55.0% | |
| TTCAGAGCAAGGGAGTGACG+AGG | + | chr7.3:34689513-34689532 | MS.gene024343:CDS | 55.0% | |
| !! | TGGTTCTAAGAGACCCCTGG+TGG | - | chr7.3:34690969-34690988 | None:intergenic | 55.0% |
| CGCTGAGCAATCCGGGAAAG+TGG | + | chr7.3:34692493-34692512 | MS.gene024343:CDS | 60.0% | |
| TGCCATGCGCTGAGCAATCC+GGG | + | chr7.3:34692486-34692505 | MS.gene024343:CDS | 60.0% | |
| TTCCCGGATTGCTCAGCGCA+TGG | - | chr7.3:34692491-34692510 | None:intergenic | 60.0% | |
| GGCGGTGGAGGTTGCCATGA+AGG | - | chr7.3:34690207-34690226 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 34689484 | 34692713 | 34689484 | ID=MS.gene024343 |
| chr7.3 | mRNA | 34689484 | 34692713 | 34689484 | ID=MS.gene024343.t1;Parent=MS.gene024343 |
| chr7.3 | exon | 34689484 | 34689586 | 34689484 | ID=MS.gene024343.t1.exon1;Parent=MS.gene024343.t1 |
| chr7.3 | CDS | 34689484 | 34689586 | 34689484 | ID=cds.MS.gene024343.t1;Parent=MS.gene024343.t1 |
| chr7.3 | exon | 34691656 | 34691770 | 34691656 | ID=MS.gene024343.t1.exon2;Parent=MS.gene024343.t1 |
| chr7.3 | CDS | 34691656 | 34691770 | 34691656 | ID=cds.MS.gene024343.t1;Parent=MS.gene024343.t1 |
| chr7.3 | exon | 34691876 | 34691967 | 34691876 | ID=MS.gene024343.t1.exon3;Parent=MS.gene024343.t1 |
| chr7.3 | CDS | 34691876 | 34691967 | 34691876 | ID=cds.MS.gene024343.t1;Parent=MS.gene024343.t1 |
| chr7.3 | exon | 34692088 | 34692713 | 34692088 | ID=MS.gene024343.t1.exon4;Parent=MS.gene024343.t1 |
| chr7.3 | CDS | 34692088 | 34692713 | 34692088 | ID=cds.MS.gene024343.t1;Parent=MS.gene024343.t1 |
| Gene Sequence |
| Protein sequence |
