AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064044

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064044.t1 MTR_6g091830 92.088 455 31 2 1 450 1 455 0.0 866
MS.gene064044.t1 MTR_6g092140 91.648 455 33 2 1 450 1 455 0.0 862
MS.gene064044.t1 MTR_6g088340 75.484 465 67 4 1 450 1 433 0.0 688
MS.gene064044.t1 MTR_3g068220 69.167 360 99 4 95 448 2 355 5.20e-173 489
MS.gene064044.t1 MTR_3g006140 57.880 368 142 4 86 449 15 373 1.10e-141 410
MS.gene064044.t1 MTR_3g006100 55.028 358 148 5 97 450 4 352 8.26e-134 389
MS.gene064044.t1 MTR_4g133490 56.704 358 140 4 97 450 2 348 9.56e-134 389
MS.gene064044.t1 MTR_3g006120 55.211 355 146 5 97 447 4 349 2.15e-133 388
MS.gene064044.t1 MTR_3g006010 45.781 474 209 10 6 447 9 466 3.42e-133 392
MS.gene064044.t1 MTR_6g011110 67.384 279 87 3 174 450 1 277 5.01e-132 382
MS.gene064044.t1 MTR_3g006180 55.043 347 143 5 107 449 1 338 7.72e-127 371
MS.gene064044.t1 MTR_3g085910 58.750 320 80 3 96 408 2 276 1.01e-122 358
MS.gene064044.t1 MTR_7g083950 47.706 436 185 13 23 450 32 432 3.34e-114 342
MS.gene064044.t1 MTR_4g133320 55.486 319 127 4 136 450 1 308 1.42e-111 331
MS.gene064044.t1 MTR_3g045700 52.198 364 151 9 95 450 2 350 2.20e-110 330
MS.gene064044.t1 MTR_3g086480 60.456 263 92 4 181 442 2 253 6.74e-101 302
MS.gene064044.t1 MTR_7g070100 48.876 356 167 7 99 450 6 350 7.60e-100 303
MS.gene064044.t1 MTR_1g100280 47.696 369 144 9 92 450 8 337 3.32e-93 285
MS.gene064044.t1 MTR_1g109340 52.124 259 106 6 197 449 108 354 2.07e-73 235
MS.gene064044.t1 MTR_1g109340 36.800 125 48 3 7 131 12 105 9.02e-15 75.9
MS.gene064044.t1 MTR_6g091850 89.109 101 11 0 350 450 1 101 1.58e-63 200
MS.gene064044.t1 MTR_1g089085 53.642 151 64 3 87 235 29 175 8.03e-45 154
MS.gene064044.t1 MTR_1g109520 50.303 165 73 4 287 449 19 176 1.58e-40 143
MS.gene064044.t1 MTR_1g089620 59.504 121 43 1 268 388 34 148 9.05e-36 134
MS.gene064044.t1 MTR_1g012330 52.899 138 62 1 174 308 1 138 7.50e-32 122
MS.gene064044.t1 MTR_1g106050 59.596 99 39 1 97 194 2 100 7.99e-32 118
MS.gene064044.t1 MTR_1g109090 46.825 126 65 2 91 214 10 135 6.84e-30 114
MS.gene064044.t1 MTR_0128s0040 41.045 134 76 3 126 258 3 134 1.72e-24 99.0
MS.gene064044.t1 MTR_6g023220 24.503 302 221 3 106 405 22 318 9.54e-21 93.6
MS.gene064044.t1 MTR_1g093300 52.128 94 42 1 271 364 7 97 3.85e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCGTAATCGTTTAATTT+TGG 0.114594 6.1:+79437910 MS.gene064044:CDS
AGCATCTTTCTTCTTGTAAA+TGG 0.165071 6.1:-79439445 None:intergenic
CGAACATGGAATTGGGTTTA+TGG 0.165078 6.1:+79437739 MS.gene064044:CDS
GACAAATTCCTTTGAGCCTT+TGG 0.209409 6.1:-79439533 None:intergenic
TTTGATGACCTCTTTCAATT+TGG 0.282653 6.1:+79439181 MS.gene064044:CDS
TTATGTCAAGTTGGAATCTT+TGG 0.283864 6.1:+79439885 MS.gene064044:CDS
AAACCAGGAATAATGAATTC+TGG 0.300415 6.1:-79440054 None:intergenic
GTGTAACTTCTAGTAATTAT+TGG 0.305673 6.1:+79439761 MS.gene064044:CDS
ATGCCAGAATTCATTATTCC+TGG 0.335290 6.1:+79440051 MS.gene064044:CDS
AGGATGAATAAGGTACTTAA+AGG 0.337066 6.1:+79437890 MS.gene064044:CDS
ATGGCAAACGAACATGGAAT+TGG 0.345392 6.1:+79437731 MS.gene064044:CDS
TTTCAAAGAAAGGATGAATA+AGG 0.348934 6.1:+79437880 MS.gene064044:CDS
ATCAATCTCGAAATCTTTGT+TGG 0.349123 6.1:+79439596 MS.gene064044:CDS
TGACCACCTCGTTGTCGAAT+TGG 0.360565 6.1:-79437971 None:intergenic
AATTTATTGGAGGAATTTCA+TGG 0.361680 6.1:+79439237 MS.gene064044:CDS
TACTTCCGATTTGCCTATCA+TGG 0.378106 6.1:+79439364 MS.gene064044:CDS
ATGTTCCATGTGGCAAATAC+AGG 0.390944 6.1:+79440004 MS.gene064044:CDS
CTCAAAGGAATTTGTCTTGG+TGG 0.392911 6.1:+79439540 MS.gene064044:CDS
ATTTCTCAAGAGCGCACCTT+TGG 0.401502 6.1:-79439282 None:intergenic
GGCAAATACAGGGTGTATAA+AGG 0.407440 6.1:+79440015 MS.gene064044:CDS
CAGTTCAAAATTTCAAAGAA+AGG 0.407992 6.1:+79437870 MS.gene064044:CDS
AAGAGAACTGTCAACTTCCT+TGG 0.409046 6.1:+79439125 MS.gene064044:CDS
TATGTCAAGTTGGAATCTTT+GGG 0.417393 6.1:+79439886 MS.gene064044:CDS
CAAAACAACGTTACATAGAT+TGG 0.418259 6.1:+79440115 MS.gene064044:CDS
TGCTTATTCGACACCACATA+AGG 0.426056 6.1:+79439621 MS.gene064044:CDS
TTGGACAAGTAATGGTTCTT+CGG 0.433887 6.1:-79439263 None:intergenic
AAAAGCAAGCAAGACTTTGC+AGG 0.442399 6.1:-79439509 None:intergenic
AGAGAACTGTCAACTTCCTT+GGG 0.449563 6.1:+79439126 MS.gene064044:CDS
AGTAATTATTGGTCACATGT+AGG 0.458582 6.1:+79439772 MS.gene064044:CDS
AATCTGTGTTTCAAGGTAAG+AGG 0.459600 6.1:+79437771 MS.gene064044:CDS
TGGCAAACGAACATGGAATT+GGG 0.471607 6.1:+79437732 MS.gene064044:CDS
GTAATTATTGGTCACATGTA+GGG 0.491564 6.1:+79439773 MS.gene064044:CDS
CACTGAGCAACCCGCACATG+TGG 0.491738 6.1:+79439950 MS.gene064044:CDS
GGATGAATAAGGTACTTAAA+GGG 0.501407 6.1:+79437891 MS.gene064044:CDS
AATTCCATGTTCGTTTGCCA+TGG 0.506447 6.1:-79437729 None:intergenic
TTAGAATTGAAGAGTACTCC+TGG 0.509421 6.1:+79439739 MS.gene064044:CDS
GCCTATCATGGGTCTTCTAG+TGG 0.510972 6.1:+79439376 MS.gene064044:CDS
GTAGGGTTGGTTAGTTGTGA+TGG 0.514554 6.1:+79439790 MS.gene064044:CDS
AGGCTCAAAGGAATTTGTCT+TGG 0.518897 6.1:+79439537 MS.gene064044:CDS
AAGACCCATGATAGGCAAAT+CGG 0.519986 6.1:-79439369 None:intergenic
ATCTGTGTTTCAAGGTAAGA+GGG 0.522269 6.1:+79437772 MS.gene064044:CDS
TCCACTAGAAGACCCATGAT+AGG 0.522961 6.1:-79439377 None:intergenic
TCTCATAACCCCACATGTGC+GGG 0.524492 6.1:-79439960 None:intergenic
GCGCACCTTTGGACAAGTAA+TGG 0.527847 6.1:-79439271 None:intergenic
GCCTCCATGGCAAACGAACA+TGG 0.527907 6.1:+79437725 None:intergenic
CAAGCTGAGTATCCCTATGC+TGG 0.530853 6.1:-79439695 None:intergenic
GAGCGGCAATAAATAGGATG+TGG 0.532946 6.1:-79440093 None:intergenic
TTATTGGTCACATGTAGGGT+TGG 0.536196 6.1:+79439777 MS.gene064044:CDS
TAGCATGGATTATGTCAAGT+TGG 0.536320 6.1:+79439876 MS.gene064044:CDS
GAAGTAAAATCTGTGTTTCA+AGG 0.545805 6.1:+79437764 MS.gene064044:CDS
TTCTCATAACCCCACATGTG+CGG 0.553716 6.1:-79439961 None:intergenic
CAACGAGGTGGTCATAGTAA+TGG 0.556109 6.1:+79437980 MS.gene064044:CDS
ATACACTACCAAATTGAAAG+AGG 0.560319 6.1:-79439189 None:intergenic
GTCACTGACAAGGCCAGCAT+AGG 0.561661 6.1:+79439682 MS.gene064044:CDS
CAAGATAGACTTCTCTAGCA+TGG 0.565769 6.1:+79439861 MS.gene064044:CDS
GCAAAGTCAACAACCTTATG+TGG 0.566743 6.1:-79439634 None:intergenic
TACACCCTGTATTTGCCACA+TGG 0.574023 6.1:-79440009 None:intergenic
TCACTGACAAGGCCAGCATA+GGG 0.582154 6.1:+79439683 MS.gene064044:CDS
ACTTCCGATTTGCCTATCAT+GGG 0.586293 6.1:+79439365 MS.gene064044:CDS
GAGTGATAAACTTTATCGTG+AGG 0.586533 6.1:-79439325 None:intergenic
TAGACATCTACAATATGAGG+TGG 0.595781 6.1:+79440143 MS.gene064044:CDS
TGTTCCATGTGGCAAATACA+GGG 0.612242 6.1:+79440005 MS.gene064044:CDS
ACTGAGCAACCCGCACATGT+GGG 0.619433 6.1:+79439951 MS.gene064044:CDS
CATATACGTTGTCACTGACA+AGG 0.623076 6.1:+79439672 MS.gene064044:CDS
CTGAGCAACCCGCACATGTG+GGG 0.626393 6.1:+79439952 MS.gene064044:CDS
ACATGGAATTGGGTTTATGG+AGG 0.639025 6.1:+79437742 MS.gene064044:CDS
AAGAACCATTACTTGTCCAA+AGG 0.641369 6.1:+79439266 MS.gene064044:CDS
TTTGCCACATGGAACATCGA+TGG 0.643688 6.1:-79439998 None:intergenic
AGTTCACTAAGTTTAAAACC+AGG 0.645687 6.1:-79440069 None:intergenic
ATGATGTCAAGCAAATCCCA+AGG 0.658074 6.1:-79439142 None:intergenic
AGTACGACGATGCTTCATGT+AGG 0.664788 6.1:-79437942 None:intergenic
TAATTACTAGAAGTTACACC+AGG 0.679117 6.1:-79439757 None:intergenic
TATGCCATCGATGTTCCATG+TGG 0.717545 6.1:+79439994 MS.gene064044:CDS
CTTCCAATTCGACAACGAGG+TGG 0.719023 6.1:+79437968 MS.gene064044:CDS
ACACTTCCAATTCGACAACG+AGG 0.766499 6.1:+79437965 MS.gene064044:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTATTATTATTA+TGG - chr6.1:79439009-79439028 None:intergenic 0.0%
!! ATACATAATTATTTATATGT+TGG + chr6.1:79438911-79438930 MS.gene064044:intron 10.0%
!!! AATTTTATAAAATTTATTGG+AGG + chr6.1:79439227-79439246 MS.gene064044:CDS 10.0%
!!! GAGAATTTTATAAAATTTAT+TGG + chr6.1:79439224-79439243 MS.gene064044:CDS 10.0%
!! CAGAAAAACATAAAAAAATA+AGG + chr6.1:79438885-79438904 MS.gene064044:intron 15.0%
!! GATATTTGTTTCGAAAAAAT+GGG + chr6.1:79438938-79438957 MS.gene064044:intron 20.0%
!! GGAAAAGAAAAAAAAAACAA+AGG + chr6.1:79438332-79438351 MS.gene064044:intron 20.0%
!! TAAGTACAATATCAAATGAA+CGG - chr6.1:79438699-79438718 None:intergenic 20.0%
!!! AATCTGATATATGTATGTTT+TGG + chr6.1:79438093-79438112 MS.gene064044:intron 20.0%
!!! ATCTGATATATGTATGTTTT+GGG + chr6.1:79438094-79438113 MS.gene064044:intron 20.0%
! AAGTACAATATCAAATGAAC+GGG - chr6.1:79438698-79438717 None:intergenic 25.0%
! AATATTATTCGTTTGTAGCT+AGG + chr6.1:79438238-79438257 MS.gene064044:intron 25.0%
! AATTTATTGGAGGAATTTCA+TGG + chr6.1:79439237-79439256 MS.gene064044:CDS 25.0%
! CAGTTCAAAATTTCAAAGAA+AGG + chr6.1:79437870-79437889 MS.gene064044:CDS 25.0%
! CGATATTTGTTTCGAAAAAA+TGG + chr6.1:79438937-79438956 MS.gene064044:intron 25.0%
! GAAATTAAACTACAACAACT+AGG + chr6.1:79438838-79438857 MS.gene064044:intron 25.0%
! GTGTAACTTCTAGTAATTAT+TGG + chr6.1:79439761-79439780 MS.gene064044:CDS 25.0%
! TTTCAAAGAAAGGATGAATA+AGG + chr6.1:79437880-79437899 MS.gene064044:CDS 25.0%
!! AGTGCTTAATTTTATGTCAA+AGG + chr6.1:79439822-79439841 MS.gene064044:CDS 25.0%
!! CTCATTTTCTATGATGTTAT+GGG + chr6.1:79438982-79439001 MS.gene064044:intron 25.0%
!! TCTGATATATGTATGTTTTG+GGG + chr6.1:79438095-79438114 MS.gene064044:intron 25.0%
!! TTTTAGACATCTACAATATG+AGG + chr6.1:79440140-79440159 MS.gene064044:CDS 25.0%
!!! CTTTCTTTGAAATTTTGAAC+TGG - chr6.1:79437872-79437891 None:intergenic 25.0%
!!! TATAGATTTTTCAGTTCTTG+CGG - chr6.1:79438610-79438629 None:intergenic 25.0%
!!! TTTTTTTTTCTTTTCCCTAG+CGG - chr6.1:79438328-79438347 None:intergenic 25.0%
AAACCAGGAATAATGAATTC+TGG - chr6.1:79440057-79440076 None:intergenic 30.0%
AGCATCTTTCTTCTTGTAAA+TGG - chr6.1:79439448-79439467 None:intergenic 30.0%
AGTAATTATTGGTCACATGT+AGG + chr6.1:79439772-79439791 MS.gene064044:CDS 30.0%
ATACACTACCAAATTGAAAG+AGG - chr6.1:79439192-79439211 None:intergenic 30.0%
ATCAATCTCGAAATCTTTGT+TGG + chr6.1:79439596-79439615 MS.gene064044:CDS 30.0%
ATTCATTGCAAGCTATAACT+AGG + chr6.1:79438807-79438826 MS.gene064044:intron 30.0%
CAAAACAACGTTACATAGAT+TGG + chr6.1:79440115-79440134 MS.gene064044:CDS 30.0%
CAAAGGACAAAAAAAGAAGA+AGG + chr6.1:79439099-79439118 MS.gene064044:intron 30.0%
CATGTGTTAGTAGATTTCTT+AGG - chr6.1:79438462-79438481 None:intergenic 30.0%
CCATAACATCATAGAAAATG+AGG - chr6.1:79438984-79439003 None:intergenic 30.0%
GAAGTAAAATCTGTGTTTCA+AGG + chr6.1:79437764-79437783 MS.gene064044:CDS 30.0%
GCAAGAACTGAAAAATCTAT+AGG + chr6.1:79438609-79438628 MS.gene064044:intron 30.0%
GTAATTATTGGTCACATGTA+GGG + chr6.1:79439773-79439792 MS.gene064044:CDS 30.0%
TAATTACTAGAAGTTACACC+AGG - chr6.1:79439760-79439779 None:intergenic 30.0%
TGTTAGTAGATTTCTTAGGT+TGG - chr6.1:79438458-79438477 None:intergenic 30.0%
! AGGATGAATAAGGTACTTAA+AGG + chr6.1:79437890-79437909 MS.gene064044:CDS 30.0%
! AGTTCACTAAGTTTAAAACC+AGG - chr6.1:79440072-79440091 None:intergenic 30.0%
! ATTTGCTTGACATCATTTTG+AGG + chr6.1:79439149-79439168 MS.gene064044:CDS 30.0%
! CCTCATTTTCTATGATGTTA+TGG + chr6.1:79438981-79439000 MS.gene064044:intron 30.0%
! GGATGAATAAGGTACTTAAA+GGG + chr6.1:79437891-79437910 MS.gene064044:CDS 30.0%
! TTTGATGACCTCTTTCAATT+TGG + chr6.1:79439181-79439200 MS.gene064044:CDS 30.0%
!! CTGATATATGTATGTTTTGG+GGG + chr6.1:79438096-79438115 MS.gene064044:intron 30.0%
!! TATGTCAAGTTGGAATCTTT+GGG + chr6.1:79439886-79439905 MS.gene064044:CDS 30.0%
!! TTATGTCAAGTTGGAATCTT+TGG + chr6.1:79439885-79439904 MS.gene064044:CDS 30.0%
!! TTGGTAGTGTATGCAAAAAT+TGG + chr6.1:79439200-79439219 MS.gene064044:CDS 30.0%
AAATTGTACTCAACTCTCCT+TGG - chr6.1:79438187-79438206 None:intergenic 35.0%
AACACCAGACAGTTATTTGT+TGG - chr6.1:79438212-79438231 None:intergenic 35.0%
AAGAACCATTACTTGTCCAA+AGG + chr6.1:79439266-79439285 MS.gene064044:CDS 35.0%
AAGCTATAACTAGGTAGGAT+TGG + chr6.1:79438816-79438835 MS.gene064044:intron 35.0%
AATCTGTGTTTCAAGGTAAG+AGG + chr6.1:79437771-79437790 MS.gene064044:CDS 35.0%
ATCTGTGTTTCAAGGTAAGA+GGG + chr6.1:79437772-79437791 MS.gene064044:CDS 35.0%
ATGCCAGAATTCATTATTCC+TGG + chr6.1:79440051-79440070 MS.gene064044:CDS 35.0%
ATTGCAAGCTATAACTAGGT+AGG + chr6.1:79438811-79438830 MS.gene064044:intron 35.0%
CATTTCCAGATGGAATGATA+GGG - chr6.1:79438778-79438797 None:intergenic 35.0%
CTATCATTCCATCTGGAAAT+GGG + chr6.1:79438777-79438796 MS.gene064044:intron 35.0%
GAGTGATAAACTTTATCGTG+AGG - chr6.1:79439328-79439347 None:intergenic 35.0%
GGCTGCTTAATTGTATATGT+AGG - chr6.1:79438437-79438456 None:intergenic 35.0%
GGGAAAATTTGACTCATTTC+TGG + chr6.1:79438116-79438135 MS.gene064044:intron 35.0%
GTGTTAATAGTGTGAATGCT+AGG - chr6.1:79438753-79438772 None:intergenic 35.0%
GTTCATTCATATTGTGACAG+TGG - chr6.1:79438378-79438397 None:intergenic 35.0%
TAGACATCTACAATATGAGG+TGG + chr6.1:79440143-79440162 MS.gene064044:CDS 35.0%
TCACAACAAACAACGATGTT+AGG - chr6.1:79439077-79439096 None:intergenic 35.0%
TCACAATATGAATGAACAGC+AGG + chr6.1:79438381-79438400 MS.gene064044:intron 35.0%
TTAAACTACAACAACTAGGC+AGG + chr6.1:79438842-79438861 MS.gene064044:intron 35.0%
TTACACTAACTCACTCATGT+AGG - chr6.1:79438287-79438306 None:intergenic 35.0%
TTCCGCATTTATTACTCCAA+AGG + chr6.1:79438643-79438662 MS.gene064044:intron 35.0%
TTCTCCAACAAATAACTGTC+TGG + chr6.1:79438205-79438224 MS.gene064044:intron 35.0%
TTGGACAAGTAATGGTTCTT+CGG - chr6.1:79439266-79439285 None:intergenic 35.0%
! AGTGGTTAGTTCCGATTATA+AGG - chr6.1:79438360-79438379 None:intergenic 35.0%
! CTCAGTGCATAATACCTTTT+CGG - chr6.1:79439937-79439956 None:intergenic 35.0%
! GAAATTTTGAACTGGAAGTC+TGG - chr6.1:79437864-79437883 None:intergenic 35.0%
! TAGCATGGATTATGTCAAGT+TGG + chr6.1:79439876-79439895 MS.gene064044:CDS 35.0%
! TATAGCTTGCAATGAATAGC+CGG - chr6.1:79438804-79438823 None:intergenic 35.0%
! TTTGGAGTAATAAATGCGGA+AGG - chr6.1:79438644-79438663 None:intergenic 35.0%
!! AAACAAAGGCGCCTTATAAT+CGG + chr6.1:79438346-79438365 MS.gene064044:intron 35.0%
!! AGGGCGTAATCGTTTAATTT+TGG + chr6.1:79437910-79437929 MS.gene064044:CDS 35.0%
!! CACCTTTGGAGTAATAAATG+CGG - chr6.1:79438648-79438667 None:intergenic 35.0%
!! CGTTGTTTGTTGTGATACAA+AGG + chr6.1:79439082-79439101 MS.gene064044:intron 35.0%
!! GGGCGTAATCGTTTAATTTT+GGG + chr6.1:79437911-79437930 MS.gene064044:CDS 35.0%
!! TGTTTTGAGCGGCAATAAAT+AGG - chr6.1:79440102-79440121 None:intergenic 35.0%
!! TTAGAATTGAAGAGTACTCC+TGG + chr6.1:79439739-79439758 MS.gene064044:CDS 35.0%
!! TTTTTCAGTTCTTGCGGTTT+TGG - chr6.1:79438604-79438623 None:intergenic 35.0%
!!! CTATGTAACGTTGTTTTGAG+CGG - chr6.1:79440113-79440132 None:intergenic 35.0%
!!! TGTCATTTTAGCATACACCA+AGG + chr6.1:79438167-79438186 MS.gene064044:intron 35.0%
AAAAGCAAGCAAGACTTTGC+AGG - chr6.1:79439512-79439531 None:intergenic 40.0%
AAGACCCATGATAGGCAAAT+CGG - chr6.1:79439372-79439391 None:intergenic 40.0%
AAGAGAACTGTCAACTTCCT+TGG + chr6.1:79439125-79439144 MS.gene064044:CDS 40.0%
ACATGGAATTGGGTTTATGG+AGG + chr6.1:79437742-79437761 MS.gene064044:CDS 40.0%
ACCCAAAACCAAACACAATG+AGG + chr6.1:79438411-79438430 MS.gene064044:intron 40.0%
ACTAACTCACTCATGTAGGA+AGG - chr6.1:79438283-79438302 None:intergenic 40.0%
AGAGAACTGTCAACTTCCTT+GGG + chr6.1:79439126-79439145 MS.gene064044:CDS 40.0%
AGGCTCAAAGGAATTTGTCT+TGG + chr6.1:79439537-79439556 MS.gene064044:CDS 40.0%
ATCAGATTCTCTATTCGACC+TGG - chr6.1:79438081-79438100 None:intergenic 40.0%
ATGAACGGGATGTTCATGAA+TGG - chr6.1:79438684-79438703 None:intergenic 40.0%
ATGATGTCAAGCAAATCCCA+AGG - chr6.1:79439145-79439164 None:intergenic 40.0%
ATGGCAAACGAACATGGAAT+TGG + chr6.1:79437731-79437750 MS.gene064044:CDS 40.0%
ATGTTCCATGTGGCAAATAC+AGG + chr6.1:79440004-79440023 MS.gene064044:CDS 40.0%
CAAGATAGACTTCTCTAGCA+TGG + chr6.1:79439861-79439880 MS.gene064044:CDS 40.0%
CATATACGTTGTCACTGACA+AGG + chr6.1:79439672-79439691 MS.gene064044:CDS 40.0%
CCATTTCCAGATGGAATGAT+AGG - chr6.1:79438779-79438798 None:intergenic 40.0%
CCTATCATTCCATCTGGAAA+TGG + chr6.1:79438776-79438795 MS.gene064044:intron 40.0%
CGAACATGGAATTGGGTTTA+TGG + chr6.1:79437739-79437758 MS.gene064044:CDS 40.0%
CGCATTTATTACTCCAAAGG+TGG + chr6.1:79438646-79438665 MS.gene064044:intron 40.0%
CTATACAACACATTGCTTCC+GGG + chr6.1:79438721-79438740 MS.gene064044:intron 40.0%
CTCAAAGGAATTTGTCTTGG+TGG + chr6.1:79439540-79439559 MS.gene064044:CDS 40.0%
GACAAATTCCTTTGAGCCTT+TGG - chr6.1:79439536-79439555 None:intergenic 40.0%
GCAAAGTCAACAACCTTATG+TGG - chr6.1:79439637-79439656 None:intergenic 40.0%
GCTATACAACACATTGCTTC+CGG + chr6.1:79438720-79438739 MS.gene064044:intron 40.0%
GGCAAATACAGGGTGTATAA+AGG + chr6.1:79440015-79440034 MS.gene064044:CDS 40.0%
TATGTAGGCCTCATTGTGTT+TGG - chr6.1:79438422-79438441 None:intergenic 40.0%
TCAGATTCTCTATTCGACCT+GGG - chr6.1:79438080-79438099 None:intergenic 40.0%
TGAACGGGATGTTCATGAAT+GGG - chr6.1:79438683-79438702 None:intergenic 40.0%
TGCTTATTCGACACCACATA+AGG + chr6.1:79439621-79439640 MS.gene064044:CDS 40.0%
TGGCAAACGAACATGGAATT+GGG + chr6.1:79437732-79437751 MS.gene064044:CDS 40.0%
TGTTCCATGTGGCAAATACA+GGG + chr6.1:79440005-79440024 MS.gene064044:CDS 40.0%
TTATTGGTCACATGTAGGGT+TGG + chr6.1:79439777-79439796 MS.gene064044:CDS 40.0%
TTATTTCACAAAACCTGCCC+AGG + chr6.1:79438060-79438079 MS.gene064044:intron 40.0%
! ACTTCCGATTTGCCTATCAT+GGG + chr6.1:79439365-79439384 MS.gene064044:CDS 40.0%
! AGTGCATAATACCTTTTCGG+CGG - chr6.1:79439934-79439953 None:intergenic 40.0%
! GGTTTGGTTTCAAAGGCTTT+GGG - chr6.1:79438495-79438514 None:intergenic 40.0%
! TACTTCCGATTTGCCTATCA+TGG + chr6.1:79439364-79439383 MS.gene064044:CDS 40.0%
! TATTTTGTGTTCCGCCGAAA+AGG + chr6.1:79439920-79439939 MS.gene064044:CDS 40.0%
!!! GCCTCATTGTGTTTGGTTTT+GGG - chr6.1:79438415-79438434 None:intergenic 40.0%
!!! GTCTTGCTTGCTTTTTCCAA+AGG + chr6.1:79439517-79439536 MS.gene064044:CDS 40.0%
!!! TGCTTTTTCCAAAGGCTCAA+AGG + chr6.1:79439525-79439544 MS.gene064044:CDS 40.0%
AAAAACCTCCTGAGCAAAGC+TGG + chr6.1:79438522-79438541 MS.gene064044:intron 45.0%
AAAACCTCCTGAGCAAAGCT+GGG + chr6.1:79438523-79438542 MS.gene064044:intron 45.0%
ACACTTCCAATTCGACAACG+AGG + chr6.1:79437965-79437984 MS.gene064044:CDS 45.0%
AGTACGACGATGCTTCATGT+AGG - chr6.1:79437945-79437964 None:intergenic 45.0%
ATGAATGAACAGCAGGCCAA+AGG + chr6.1:79438388-79438407 MS.gene064044:intron 45.0%
ATGTTCATGAATGGGTGTGG+GGG - chr6.1:79438675-79438694 None:intergenic 45.0%
ATTCCATCTGGAAATGGGAC+CGG + chr6.1:79438782-79438801 MS.gene064044:intron 45.0%
CAACGAGGTGGTCATAGTAA+TGG + chr6.1:79437980-79437999 MS.gene064044:CDS 45.0%
CACAACCCTATCATTCCATC+TGG + chr6.1:79438770-79438789 MS.gene064044:intron 45.0%
CTACAACAACTAGGCAGGAT+TGG + chr6.1:79438847-79438866 MS.gene064044:intron 45.0%
GAGCGGCAATAAATAGGATG+TGG - chr6.1:79440096-79440115 None:intergenic 45.0%
GAGGATTGCTTCAAGCTGAT+TGG - chr6.1:79438574-79438593 None:intergenic 45.0%
GATGTTCATGAATGGGTGTG+GGG - chr6.1:79438676-79438695 None:intergenic 45.0%
GGATGTTCATGAATGGGTGT+GGG - chr6.1:79438677-79438696 None:intergenic 45.0%
TACACCCTGTATTTGCCACA+TGG - chr6.1:79440012-79440031 None:intergenic 45.0%
TATGCCATCGATGTTCCATG+TGG + chr6.1:79439994-79440013 MS.gene064044:CDS 45.0%
TCCACTAGAAGACCCATGAT+AGG - chr6.1:79439380-79439399 None:intergenic 45.0%
TTCTCATAACCCCACATGTG+CGG - chr6.1:79439964-79439983 None:intergenic 45.0%
TTTGCCACATGGAACATCGA+TGG - chr6.1:79440001-79440020 None:intergenic 45.0%
! ATTTCTCAAGAGCGCACCTT+TGG - chr6.1:79439285-79439304 None:intergenic 45.0%
! CTCAGGAGGTTTTTGTTCTG+CGG - chr6.1:79438516-79438535 None:intergenic 45.0%
! GAGGTTTTTGTTCTGCGGTT+TGG - chr6.1:79438511-79438530 None:intergenic 45.0%
! GATTGGCATTGTGTTGCTGT+GGG - chr6.1:79438557-79438576 None:intergenic 45.0%
! TGATTGGCATTGTGTTGCTG+TGG - chr6.1:79438558-79438577 None:intergenic 45.0%
!! CGGTTTGGTTTCAAAGGCTT+TGG - chr6.1:79438496-79438515 None:intergenic 45.0%
!! GGCCTCATTGTGTTTGGTTT+TGG - chr6.1:79438416-79438435 None:intergenic 45.0%
!! GTAGGGTTGGTTAGTTGTGA+TGG + chr6.1:79439790-79439809 MS.gene064044:CDS 45.0%
!! GTTCTGCGGTTTGGTTTCAA+AGG - chr6.1:79438502-79438521 None:intergenic 45.0%
!! TTCAGTTCTTGCGGTTTTGG+AGG - chr6.1:79438601-79438620 None:intergenic 45.0%
!!! GTGTTTGGTTTTGGGTCCTT+TGG - chr6.1:79438407-79438426 None:intergenic 45.0%
!!! TTGCGGTTTTGGAGGTTTTG+AGG - chr6.1:79438593-79438612 None:intergenic 45.0%
ACACTAACACACTCTCCGCT+AGG + chr6.1:79438310-79438329 MS.gene064044:intron 50.0%
ATTCTCTATTCGACCTGGGC+AGG - chr6.1:79438076-79438095 None:intergenic 50.0%
CAAGCTGAGTATCCCTATGC+TGG - chr6.1:79439698-79439717 None:intergenic 50.0%
CACTAACACACTCTCCGCTA+GGG + chr6.1:79438311-79438330 MS.gene064044:intron 50.0%
CTTCCAATTCGACAACGAGG+TGG + chr6.1:79437968-79437987 MS.gene064044:CDS 50.0%
GCCTATCATGGGTCTTCTAG+TGG + chr6.1:79439376-79439395 MS.gene064044:CDS 50.0%
GCGCACCTTTGGACAAGTAA+TGG - chr6.1:79439274-79439293 None:intergenic 50.0%
GGGATGTTCATGAATGGGTG+TGG - chr6.1:79438678-79438697 None:intergenic 50.0%
GTGAATGCTAGGTCGTATCC+CGG - chr6.1:79438742-79438761 None:intergenic 50.0%
TCACTGACAAGGCCAGCATA+GGG + chr6.1:79439683-79439702 MS.gene064044:CDS 50.0%
TCTCATAACCCCACATGTGC+GGG - chr6.1:79439963-79439982 None:intergenic 50.0%
TGACCACCTCGTTGTCGAAT+TGG - chr6.1:79437974-79437993 None:intergenic 50.0%
! GTTTTTGCCCAGCTTTGCTC+AGG - chr6.1:79438533-79438552 None:intergenic 50.0%
ACTGAGCAACCCGCACATGT+GGG + chr6.1:79439951-79439970 MS.gene064044:CDS 55.0%
GTCACTGACAAGGCCAGCAT+AGG + chr6.1:79439682-79439701 MS.gene064044:CDS 55.0%
TAGCCGGTCCCATTTCCAGA+TGG - chr6.1:79438788-79438807 None:intergenic 55.0%
TTTGCCCAGCTTTGCTCAGG+AGG - chr6.1:79438530-79438549 None:intergenic 55.0%
!! CAAAGGCTTTGGGTGATGCG+AGG - chr6.1:79438485-79438504 None:intergenic 55.0%
CACTGAGCAACCCGCACATG+TGG + chr6.1:79439950-79439969 MS.gene064044:CDS 60.0%
CTGAGCAACCCGCACATGTG+GGG + chr6.1:79439952-79439971 MS.gene064044:CDS 60.0%
GGTGTGGGGGTTTCCACCTT+TGG - chr6.1:79438662-79438681 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 79437731 79440185 79437731 ID=MS.gene064044
chr6.1 mRNA 79437731 79440185 79437731 ID=MS.gene064044.t1;Parent=MS.gene064044
chr6.1 exon 79437731 79438001 79437731 ID=MS.gene064044.t1.exon1;Parent=MS.gene064044.t1
chr6.1 CDS 79437731 79438001 79437731 ID=cds.MS.gene064044.t1;Parent=MS.gene064044.t1
chr6.1 exon 79439104 79440185 79439104 ID=MS.gene064044.t1.exon2;Parent=MS.gene064044.t1
chr6.1 CDS 79439104 79440185 79439104 ID=cds.MS.gene064044.t1;Parent=MS.gene064044.t1
Gene Sequence

>MS.gene064044

ATGGCAAACGAACATGGAATTGGGTTTATGGAGGAAGTAAAATCTGTGTTTCAAGGTAAGAGGGAAGAGTATGAAGAGTTTATAAAAGACATAAATGCTTTTAAGACGCTGATGAATGATCATCGAATCACCAGACTTCCAGTTCAAAATTTCAAAGAAAGGATGAATAAGGTACTTAAAGGGCGTAATCGTTTAATTTTGGGATTCAACGCCTACATGAAGCATCGTCGTACTACACTTCCAATTCGACAACGAGGTGGTCATAGTAATGGTTAGTATTTTTTTTTTTTTTATGATTATGTTGATATTTTTTTATACTATATTGAAACTTATTTCACAAAACCTGCCCAGGTCGAATAGAGAATCTGATATATGTATGTTTTGGGGGAAAATTTGACTCATTTCTGGTGTGATATTTGCAAAATTGAAGAGTGTGTGTCATTTTAGCATACACCAAGGAGAGTTGAGTACAATTTCTCCAACAAATAACTGTCTGGTGTTTGTTTAAATATTATTCGTTTGTAGCTAGGTATCATAATTGATGAGTTTCCTTCCTACATGAGTGAGTTAGTGTAAGACACACTAACACACTCTCCGCTAGGGAAAAGAAAAAAAAAACAAAGGCGCCTTATAATCGGAACTAACCACTGTCACAATATGAATGAACAGCAGGCCAAAGGACCCAAAACCAAACACAATGAGGCCTACATATACAATTAAGCAGCCAACCTAAGAAATCTACTAACACATGCCTCGCATCACCCAAAGCCTTTGAAACCAAACCGCAGAACAAAAACCTCCTGAGCAAAGCTGGGCAAAAACTCCCACAGCAACACAATGCCAATCAGCTTGAAGCAATCCTCAAAACCTCCAAAACCGCAAGAACTGAAAAATCTATAGGATAGATTTACCTTCCGCATTTATTACTCCAAAGGTGGAAACCCCCACACCCATTCATGAACATCCCGTTCATTTGATATTGTACTTAAGCTATACAACACATTGCTTCCGGGATACGACCTAGCATTCACACTATTAACACAACCCTATCATTCCATCTGGAAATGGGACCGGCTATTCATTGCAAGCTATAACTAGGTAGGATTGGAAATTAAACTACAACAACTAGGCAGGATTGGAAATTAAACTACTTACAGAAAAACATAAAAAAATAAGGATAATACATAATTATTTATATGTTGGTCTCGATATTTGTTTCGAAAAAATGGGAAAATAATATTTCTTTATCTCCTCATTTTCTATGATGTTATGGGACCATAATAATAATAAAAAAAAATCATGTTTTCGAAATATAGAAAGAAAAAAAACATGTTTGTAAATCACCTAACATCGTTGTTTGTTGTGATACAAAGGACAAAAAAAGAAGAAGGTAGAAGAGAACTGTCAACTTCCTTGGGATTTGCTTGACATCATTTTGAGGAATCTAGATTTTGATGACCTCTTTCAATTTGGTAGTGTATGCAAAAATTGGCGAGAATTTTATAAAATTTATTGGAGGAATTTCATGGCATCCGAAGAACCATTACTTGTCCAAAGGTGCGCTCTTGAGAAATCTTTCAACTTCTTCAACTTACCTCACGATAAAGTTTATCACTCAAAGATGATCAATAACTACTTCCGATTTGCCTATCATGGGTCTTCTAGTGGATATTTCATCATGACACGAAAAGATAATTCATTTATACTTATTAATCCATTTACAAGAAGAAAGATGCTAATCAATAACTCAGTCTTCAAAGTTGATTTCAAATTTTTTTCCTGCAAAGTCTTGCTTGCTTTTTCCAAAGGCTCAAAGGAATTTGTCTTGGTGGTTTCATGTAGAAATTCTGATAATTTGCATGTCTATCAATCTCGAAATCTTTGTTGGACTGCTTATTCGACACCACATAAGGTTGTTGACTTTGCTGTTTTAAATTATATCATATACGTTGTCACTGACAAGGCCAGCATAGGGATACTCAGCTTGAAATATGCAAATATAAATTTTTTAGAATTGAAGAGTACTCCTGGTGTAACTTCTAGTAATTATTGGTCACATGTAGGGTTGGTTAGTTGTGATGGATATCTTTTAGTGCTTAATTTTATGTCAAAGGTAACGTATAACGTGTACAAGATAGACTTCTCTAGCATGGATTATGTCAAGTTGGAATCTTTGGGTGACATTGCAATATTTTGTGTTCCGCCGAAAAGGTATTATGCACTGAGCAACCCGCACATGTGGGGTTATGAGAACAATTCTATCTATGCCATCGATGTTCCATGTGGCAAATACAGGGTGTATAAAGGAGATAACAAAAAAATGCCAGAATTCATTATTCCTGGTTTTAAACTTAGTGAACTTCCACATCCTATTTATTGCCGCTCAAAACAACGTTACATAGATTGGTGTTTTAGACATCTACAATATGAGGTGGATTATACTCTCGTTGAGTAG
Protein sequence

>MS.gene064044.t1

MANEHGIGFMEEVKSVFQGKREEYEEFIKDINAFKTLMNDHRITRLPVQNFKERMNKVLKGRNRLILGFNAYMKHRRTTLPIRQRGGHSNGQKKKKVEENCQLPWDLLDIILRNLDFDDLFQFGSVCKNWREFYKIYWRNFMASEEPLLVQRCALEKSFNFFNLPHDKVYHSKMINNYFRFAYHGSSSGYFIMTRKDNSFILINPFTRRKMLINNSVFKVDFKFFSCKVLLAFSKGSKEFVLVVSCRNSDNLHVYQSRNLCWTAYSTPHKVVDFAVLNYIIYVVTDKASIGILSLKYANINFLELKSTPGVTSSNYWSHVGLVSCDGYLLVLNFMSKVTYNVYKIDFSSMDYVKLESLGDIAIFCVPPKRYYALSNPHMWGYENNSIYAIDVPCGKYRVYKGDNKKMPEFIIPGFKLSELPHPIYCRSKQRYIDWCFRHLQYEVDYTLVE