Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52540.t1 | RHN65243.1 | 94 | 352 | 21 | 0 | 1 | 352 | 1 | 352 | 6.90E-194 | 686.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52540.t1 | G7J085 | 94.0 | 352 | 21 | 0 | 1 | 352 | 118 | 469 | 5.0e-194 | 686.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52540.t1 | MTR_3g006010 | 94.034 | 352 | 21 | 0 | 1 | 352 | 118 | 469 | 0.0 | 691 |
| MS.gene52540.t1 | MTR_3g006100 | 85.795 | 352 | 50 | 0 | 1 | 352 | 1 | 352 | 0.0 | 626 |
| MS.gene52540.t1 | MTR_3g006120 | 85.795 | 352 | 50 | 0 | 1 | 352 | 1 | 352 | 0.0 | 625 |
| MS.gene52540.t1 | MTR_3g006180 | 84.866 | 337 | 51 | 0 | 14 | 350 | 1 | 337 | 0.0 | 587 |
| MS.gene52540.t1 | MTR_3g006140 | 69.855 | 345 | 104 | 0 | 4 | 348 | 26 | 370 | 0.0 | 508 |
| MS.gene52540.t1 | MTR_4g133490 | 68.208 | 346 | 108 | 2 | 4 | 349 | 2 | 345 | 2.69e-163 | 460 |
| MS.gene52540.t1 | MTR_4g133320 | 67.752 | 307 | 95 | 2 | 44 | 349 | 2 | 305 | 1.43e-138 | 396 |
| MS.gene52540.t1 | MTR_3g068220 | 56.983 | 358 | 141 | 4 | 1 | 349 | 1 | 354 | 7.32e-133 | 383 |
| MS.gene52540.t1 | MTR_6g091830 | 54.648 | 355 | 148 | 5 | 4 | 349 | 102 | 452 | 1.63e-129 | 378 |
| MS.gene52540.t1 | MTR_6g092140 | 54.366 | 355 | 149 | 5 | 4 | 349 | 102 | 452 | 3.28e-128 | 375 |
| MS.gene52540.t1 | MTR_3g045700 | 56.374 | 353 | 144 | 5 | 1 | 349 | 1 | 347 | 7.30e-126 | 365 |
| MS.gene52540.t1 | MTR_7g070100 | 55.814 | 344 | 148 | 4 | 7 | 349 | 7 | 347 | 2.80e-121 | 353 |
| MS.gene52540.t1 | MTR_7g083950 | 54.366 | 355 | 147 | 8 | 1 | 349 | 84 | 429 | 1.38e-113 | 337 |
| MS.gene52540.t1 | MTR_1g100280 | 50.852 | 352 | 137 | 6 | 4 | 349 | 13 | 334 | 8.51e-105 | 311 |
| MS.gene52540.t1 | MTR_6g088340 | 53.055 | 311 | 133 | 5 | 48 | 349 | 124 | 430 | 3.83e-101 | 305 |
| MS.gene52540.t1 | MTR_6g011110 | 56.159 | 276 | 109 | 3 | 83 | 349 | 2 | 274 | 1.07e-98 | 293 |
| MS.gene52540.t1 | MTR_3g085910 | 47.352 | 321 | 110 | 4 | 6 | 316 | 5 | 276 | 2.07e-92 | 277 |
| MS.gene52540.t1 | MTR_1g109340 | 59.127 | 252 | 95 | 3 | 102 | 349 | 105 | 352 | 7.33e-91 | 276 |
| MS.gene52540.t1 | MTR_3g086480 | 57.812 | 256 | 102 | 4 | 90 | 344 | 3 | 253 | 4.51e-86 | 260 |
| MS.gene52540.t1 | MTR_1g109520 | 58.824 | 153 | 59 | 1 | 201 | 349 | 22 | 174 | 5.14e-54 | 176 |
| MS.gene52540.t1 | MTR_1g089085 | 56.028 | 141 | 57 | 3 | 4 | 143 | 39 | 175 | 7.25e-45 | 152 |
| MS.gene52540.t1 | MTR_1g012330 | 65.833 | 120 | 41 | 0 | 83 | 202 | 2 | 121 | 2.54e-42 | 148 |
| MS.gene52540.t1 | MTR_1g089620 | 58.209 | 134 | 53 | 1 | 175 | 308 | 30 | 160 | 4.91e-42 | 148 |
| MS.gene52540.t1 | MTR_1g109090 | 50.388 | 129 | 63 | 1 | 1 | 128 | 13 | 141 | 1.59e-34 | 124 |
| MS.gene52540.t1 | MTR_1g106050 | 54.206 | 107 | 47 | 1 | 4 | 108 | 2 | 108 | 3.87e-31 | 115 |
| MS.gene52540.t1 | MTR_0128s0040 | 43.284 | 134 | 74 | 2 | 33 | 166 | 3 | 134 | 3.48e-28 | 107 |
| MS.gene52540.t1 | MTR_6g023220 | 27.797 | 295 | 205 | 6 | 13 | 305 | 22 | 310 | 6.07e-27 | 109 |
| MS.gene52540.t1 | MTR_1g093300 | 54.455 | 101 | 46 | 0 | 182 | 282 | 7 | 107 | 1.58e-26 | 102 |
| MS.gene52540.t1 | MTR_6g091850 | 43.299 | 97 | 49 | 2 | 258 | 348 | 1 | 97 | 8.61e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGGTACTTAGCCTATTT+TGG | 0.108241 | 3.4:-1555450 | MS.gene52540:CDS |
| ACCTTCTTTCTTCTTGTAAA+TGG | 0.145840 | 3.4:+1555369 | None:intergenic |
| TGTCTATCAGTCTCGAAATT+TGG | 0.157460 | 3.4:-1555223 | MS.gene52540:CDS |
| CTATCATGCTTAATGTATTT+TGG | 0.196702 | 3.4:+1554760 | None:intergenic |
| ATATGTAGAATTGACTTTAA+AGG | 0.213151 | 3.4:+1555332 | None:intergenic |
| TACCATGTCTTACTTGCTTT+TGG | 0.226717 | 3.4:-1555303 | MS.gene52540:CDS |
| ATTATCTTCTATGTTATTCA+TGG | 0.297170 | 3.4:+1555707 | None:intergenic |
| GGGAGTTTCATAAAACTTAC+TGG | 0.299093 | 3.4:-1555593 | MS.gene52540:CDS |
| ACAACATGTAAAGTGTGTTT+AGG | 0.310726 | 3.4:-1554799 | MS.gene52540:CDS |
| TCAAGAATATCCCAGGAAAA+TGG | 0.316158 | 3.4:+1555681 | None:intergenic |
| GTCTATCAGTCTCGAAATTT+GGG | 0.331483 | 3.4:-1555222 | MS.gene52540:CDS |
| CAACATGTAAAGTGTGTTTA+GGG | 0.332853 | 3.4:-1554798 | MS.gene52540:CDS |
| GTCGCTTCATGTAAAAGTTC+TGG | 0.333120 | 3.4:-1555255 | MS.gene52540:CDS |
| TTCCAGCTTGACATAATTCA+TGG | 0.341057 | 3.4:+1554936 | None:intergenic |
| TTTAATAACTAATGGTTCTT+GGG | 0.345665 | 3.4:+1555554 | None:intergenic |
| CAATAACCATGTTACTCATT+TGG | 0.348533 | 3.4:+1554658 | None:intergenic |
| TTTCTTGCGTGTGCAAGAAT+TGG | 0.355227 | 3.4:-1555617 | MS.gene52540:CDS |
| CGAAGACCATCAATCAATTC+TGG | 0.363197 | 3.4:-1555467 | MS.gene52540:CDS |
| TCCGCTAGAACATCCAAAAT+AGG | 0.373337 | 3.4:+1555437 | None:intergenic |
| AGCAAGTAGGCATTCTCCTT+TGG | 0.391766 | 3.4:+1554724 | None:intergenic |
| AAAGGAGAATGCCTACTTGC+TGG | 0.396598 | 3.4:-1554722 | MS.gene52540:CDS |
| TTTCAAAACCCCACCTCCTC+AGG | 0.410146 | 3.4:+1554854 | None:intergenic |
| TACATTAAGCATGATAGAAC+TGG | 0.424208 | 3.4:-1554754 | MS.gene52540:CDS |
| AGGAAAAGAATTTCTTATCA+TGG | 0.433315 | 3.4:+1555523 | None:intergenic |
| TAAACACACTTTACATGTTG+TGG | 0.439177 | 3.4:+1554801 | None:intergenic |
| TTATGTCAAGCTGGAAACTT+TGG | 0.444741 | 3.4:-1554929 | MS.gene52540:CDS |
| ATCAGTCTCGAAATTTGGGT+TGG | 0.448207 | 3.4:-1555218 | MS.gene52540:CDS |
| TATGTCAAGCTGGAAACTTT+GGG | 0.448977 | 3.4:-1554928 | MS.gene52540:CDS |
| GTCATCGAAATCTAGATCTC+TGG | 0.451722 | 3.4:+1555650 | None:intergenic |
| TCAGTCTCGAAATTTGGGTT+GGG | 0.465385 | 3.4:-1555217 | MS.gene52540:CDS |
| AAGTAGGCATTCTCCTTTGG+AGG | 0.471286 | 3.4:+1554727 | None:intergenic |
| CTAAGGTTAGTTTGCTGTGA+TGG | 0.475690 | 3.4:-1555024 | MS.gene52540:CDS |
| AGCGGATATTTGATCATGAA+AGG | 0.482955 | 3.4:-1555420 | MS.gene52540:CDS |
| CATTGAGCAACCTGAGGAGG+TGG | 0.488223 | 3.4:-1554864 | MS.gene52540:CDS |
| GTAAACATTCAATATTTCCT+CGG | 0.492474 | 3.4:+1554975 | None:intergenic |
| ACAAAGTCAACAACCTTCCA+TGG | 0.493618 | 3.4:+1555171 | None:intergenic |
| CTTGCGTGTGCAAGAATTGG+AGG | 0.496446 | 3.4:-1555614 | MS.gene52540:CDS |
| AGAATGCCTACTTGCTGGAT+TGG | 0.496684 | 3.4:-1554717 | MS.gene52540:CDS |
| TAAGTACCAGAATTGATTGA+TGG | 0.499348 | 3.4:+1555461 | None:intergenic |
| TCCATTTACAAGAAGAAAGA+AGG | 0.500617 | 3.4:-1555370 | MS.gene52540:CDS |
| GCGGATATTTGATCATGAAA+GGG | 0.505605 | 3.4:-1555419 | MS.gene52540:CDS |
| AACCATGAATTATGTCAAGC+TGG | 0.505920 | 3.4:-1554938 | MS.gene52540:CDS |
| TCGGTCAGCTATGCTGATGA+AGG | 0.509137 | 3.4:+1555503 | None:intergenic |
| GTCACCAACGAGGCCATCAT+AGG | 0.512536 | 3.4:-1555123 | MS.gene52540:CDS |
| CATCACAGCAAACTAACCTT+AGG | 0.524454 | 3.4:+1555025 | None:intergenic |
| CAAGTCGAGTACACCTATGA+TGG | 0.537478 | 3.4:+1555110 | None:intergenic |
| GGAAATATTGAATGTTTACA+AGG | 0.540759 | 3.4:-1554971 | MS.gene52540:CDS |
| TGTTGTGGATGAAAGATTGA+TGG | 0.544678 | 3.4:+1554816 | None:intergenic |
| TGGGTTACATATTTAACAGT+GGG | 0.544949 | 3.4:-1555198 | MS.gene52540:CDS |
| CTTTAGACATCAACGATATG+AGG | 0.560266 | 3.4:-1554692 | MS.gene52540:CDS |
| ATTTAACAGTGGGAAATCCA+TGG | 0.561286 | 3.4:-1555188 | MS.gene52540:CDS |
| TGTGAAGTAGATGTTACATC+GGG | 0.569048 | 3.4:+1555048 | None:intergenic |
| TACACCTATGATGGCCTCGT+TGG | 0.570402 | 3.4:+1555119 | None:intergenic |
| AATGACATCAAGAATATCCC+AGG | 0.580022 | 3.4:+1555674 | None:intergenic |
| AGTGGTTCATATTGAGTCCG+AGG | 0.581618 | 3.4:-1554992 | MS.gene52540:CDS |
| TTGCGTGTGCAAGAATTGGA+GGG | 0.591841 | 3.4:-1555613 | MS.gene52540:CDS |
| ACACGCAAGAAAATTGAAAG+AGG | 0.594871 | 3.4:+1555628 | None:intergenic |
| TAACATCTACTTCACACCTA+AGG | 0.596246 | 3.4:-1555041 | MS.gene52540:CDS |
| TTGAGCAACCTGAGGAGGTG+GGG | 0.603109 | 3.4:-1554862 | MS.gene52540:CDS |
| AACAGTGGGAAATCCATGGA+AGG | 0.604878 | 3.4:-1555184 | MS.gene52540:CDS |
| ATTGAGCAACCTGAGGAGGT+GGG | 0.606051 | 3.4:-1554863 | MS.gene52540:CDS |
| TAGACATCAACGATATGAGG+TGG | 0.615065 | 3.4:-1554689 | MS.gene52540:CDS |
| GTGTGAAGTAGATGTTACAT+CGG | 0.616275 | 3.4:+1555047 | None:intergenic |
| TTGGGTTACATATTTAACAG+TGG | 0.618018 | 3.4:-1555199 | MS.gene52540:CDS |
| AAAGCACCAATCCAGCAAGT+AGG | 0.620337 | 3.4:+1554711 | None:intergenic |
| CGGATATTTGATCATGAAAG+GGG | 0.623275 | 3.4:-1555418 | MS.gene52540:CDS |
| ATGCATTGAGCAACCTGAGG+AGG | 0.630478 | 3.4:-1554867 | MS.gene52540:CDS |
| TGCCAAAAGCAAGTAAGACA+TGG | 0.647599 | 3.4:+1555301 | None:intergenic |
| TAGAACTGGAGTTCCTCCAA+AGG | 0.655923 | 3.4:-1554740 | MS.gene52540:CDS |
| TCTATGCATTGAGCAACCTG+AGG | 0.699387 | 3.4:-1554870 | MS.gene52540:CDS |
| AACATGTAAAGTGTGTTTAG+GGG | 0.701783 | 3.4:-1554797 | MS.gene52540:CDS |
| TATATATGTTGTCACCAACG+AGG | 0.759362 | 3.4:-1555133 | MS.gene52540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAAAAAATTTATATTTG+AGG | + | chr3.4:1555294-1555313 | None:intergenic | 10.0% |
| !!! | TAAGACTTTTTAATAACTAA+TGG | + | chr3.4:1554831-1554850 | None:intergenic | 15.0% |
| !! | TTTAATAACTAATGGTTCTT+GGG | + | chr3.4:1554823-1554842 | None:intergenic | 20.0% |
| !!! | ATATGTAGAATTGACTTTAA+AGG | + | chr3.4:1555045-1555064 | None:intergenic | 20.0% |
| !!! | TTTTAATAACTAATGGTTCT+TGG | + | chr3.4:1554824-1554843 | None:intergenic | 20.0% |
| ! | AACTTACTGGAAAAAATTCT+TGG | - | chr3.4:1554794-1554813 | MS.gene52540:CDS | 25.0% |
| ! | AGGAAAAGAATTTCTTATCA+TGG | + | chr3.4:1554854-1554873 | None:intergenic | 25.0% |
| ! | GGAAATATTGAATGTTTACA+AGG | - | chr3.4:1555403-1555422 | MS.gene52540:CDS | 25.0% |
| ! | GTAAACATTCAATATTTCCT+CGG | + | chr3.4:1555402-1555421 | None:intergenic | 25.0% |
| !! | CTATCATGCTTAATGTATTT+TGG | + | chr3.4:1555617-1555636 | None:intergenic | 25.0% |
| AACATGTAAAGTGTGTTTAG+GGG | - | chr3.4:1555577-1555596 | MS.gene52540:CDS | 30.0% | |
| ACAACATGTAAAGTGTGTTT+AGG | - | chr3.4:1555575-1555594 | MS.gene52540:CDS | 30.0% | |
| ACCTTCTTTCTTCTTGTAAA+TGG | + | chr3.4:1555008-1555027 | None:intergenic | 30.0% | |
| CAACATGTAAAGTGTGTTTA+GGG | - | chr3.4:1555576-1555595 | MS.gene52540:CDS | 30.0% | |
| TAAACACACTTTACATGTTG+TGG | + | chr3.4:1555576-1555595 | None:intergenic | 30.0% | |
| TAAGTACCAGAATTGATTGA+TGG | + | chr3.4:1554916-1554935 | None:intergenic | 30.0% | |
| TACATTAAGCATGATAGAAC+TGG | - | chr3.4:1555620-1555639 | MS.gene52540:CDS | 30.0% | |
| TCCATTTACAAGAAGAAAGA+AGG | - | chr3.4:1555004-1555023 | MS.gene52540:CDS | 30.0% | |
| TGGGTTACATATTTAACAGT+GGG | - | chr3.4:1555176-1555195 | MS.gene52540:CDS | 30.0% | |
| TTGGGTTACATATTTAACAG+TGG | - | chr3.4:1555175-1555194 | MS.gene52540:CDS | 30.0% | |
| ! | AAGATAATTGTCCATTTTCC+TGG | - | chr3.4:1554682-1554701 | MS.gene52540:CDS | 30.0% |
| ! | AGATAATTGTCCATTTTCCT+GGG | - | chr3.4:1554683-1554702 | MS.gene52540:CDS | 30.0% |
| ! | TCTTCGAGTGATAAACTTTT+CGG | + | chr3.4:1554893-1554912 | None:intergenic | 30.0% |
| !!! | ATTGCCTTATTTTATGCTTC+GGG | - | chr3.4:1555473-1555492 | MS.gene52540:CDS | 30.0% |
| !!! | CATTGCCTTATTTTATGCTT+CGG | - | chr3.4:1555472-1555491 | MS.gene52540:CDS | 30.0% |
| AACCATGAATTATGTCAAGC+TGG | - | chr3.4:1555436-1555455 | MS.gene52540:CDS | 35.0% | |
| AATGACATCAAGAATATCCC+AGG | + | chr3.4:1554703-1554722 | None:intergenic | 35.0% | |
| ACACGCAAGAAAATTGAAAG+AGG | + | chr3.4:1554749-1554768 | None:intergenic | 35.0% | |
| AGCGGATATTTGATCATGAA+AGG | - | chr3.4:1554954-1554973 | MS.gene52540:CDS | 35.0% | |
| ATTTAACAGTGGGAAATCCA+TGG | - | chr3.4:1555186-1555205 | MS.gene52540:CDS | 35.0% | |
| CGGATATTTGATCATGAAAG+GGG | - | chr3.4:1554956-1554975 | MS.gene52540:CDS | 35.0% | |
| CTTTAGACATCAACGATATG+AGG | - | chr3.4:1555682-1555701 | MS.gene52540:CDS | 35.0% | |
| GCGGATATTTGATCATGAAA+GGG | - | chr3.4:1554955-1554974 | MS.gene52540:CDS | 35.0% | |
| GGGAGTTTCATAAAACTTAC+TGG | - | chr3.4:1554781-1554800 | MS.gene52540:CDS | 35.0% | |
| GTCTATCAGTCTCGAAATTT+GGG | - | chr3.4:1555152-1555171 | MS.gene52540:CDS | 35.0% | |
| GTGTGAAGTAGATGTTACAT+CGG | + | chr3.4:1555330-1555349 | None:intergenic | 35.0% | |
| TAACATCTACTTCACACCTA+AGG | - | chr3.4:1555333-1555352 | MS.gene52540:CDS | 35.0% | |
| TATATATGTTGTCACCAACG+AGG | - | chr3.4:1555241-1555260 | MS.gene52540:CDS | 35.0% | |
| TATGTCAAGCTGGAAACTTT+GGG | - | chr3.4:1555446-1555465 | MS.gene52540:CDS | 35.0% | |
| TCAAGAATATCCCAGGAAAA+TGG | + | chr3.4:1554696-1554715 | None:intergenic | 35.0% | |
| TGTCTATCAGTCTCGAAATT+TGG | - | chr3.4:1555151-1555170 | MS.gene52540:CDS | 35.0% | |
| TGTGAAGTAGATGTTACATC+GGG | + | chr3.4:1555329-1555348 | None:intergenic | 35.0% | |
| TGTTGTGGATGAAAGATTGA+TGG | + | chr3.4:1555561-1555580 | None:intergenic | 35.0% | |
| TTATGTCAAGCTGGAAACTT+TGG | - | chr3.4:1555445-1555464 | MS.gene52540:CDS | 35.0% | |
| TTCCAGCTTGACATAATTCA+TGG | + | chr3.4:1555441-1555460 | None:intergenic | 35.0% | |
| ! | TACCATGTCTTACTTGCTTT+TGG | - | chr3.4:1555071-1555090 | MS.gene52540:CDS | 35.0% |
| ! | TTCTGGTACTTAGCCTATTT+TGG | - | chr3.4:1554924-1554943 | MS.gene52540:CDS | 35.0% |
| !!! | TTGCCTTATTTTATGCTTCG+GGG | - | chr3.4:1555474-1555493 | MS.gene52540:CDS | 35.0% |
| ACAAAGTCAACAACCTTCCA+TGG | + | chr3.4:1555206-1555225 | None:intergenic | 40.0% | |
| ATCAGTCTCGAAATTTGGGT+TGG | - | chr3.4:1555156-1555175 | MS.gene52540:CDS | 40.0% | |
| CATCACAGCAAACTAACCTT+AGG | + | chr3.4:1555352-1555371 | None:intergenic | 40.0% | |
| CGAAGACCATCAATCAATTC+TGG | - | chr3.4:1554907-1554926 | MS.gene52540:CDS | 40.0% | |
| GTCATCGAAATCTAGATCTC+TGG | + | chr3.4:1554727-1554746 | None:intergenic | 40.0% | |
| GTCGCTTCATGTAAAAGTTC+TGG | - | chr3.4:1555119-1555138 | MS.gene52540:CDS | 40.0% | |
| TAGACATCAACGATATGAGG+TGG | - | chr3.4:1555685-1555704 | MS.gene52540:CDS | 40.0% | |
| TCCGCTAGAACATCCAAAAT+AGG | + | chr3.4:1554940-1554959 | None:intergenic | 40.0% | |
| TGCCAAAAGCAAGTAAGACA+TGG | + | chr3.4:1555076-1555095 | None:intergenic | 40.0% | |
| TTCCCCCGAAGCATAAAATA+AGG | + | chr3.4:1555480-1555499 | None:intergenic | 40.0% | |
| TTTCTTGCGTGTGCAAGAAT+TGG | - | chr3.4:1554757-1554776 | MS.gene52540:CDS | 40.0% | |
| ! | TCAGTCTCGAAATTTGGGTT+GGG | - | chr3.4:1555157-1555176 | MS.gene52540:CDS | 40.0% |
| !! | CTAAGGTTAGTTTGCTGTGA+TGG | - | chr3.4:1555350-1555369 | MS.gene52540:CDS | 40.0% |
| !! | GCCTATTTTGGATGTTCTAG+CGG | - | chr3.4:1554936-1554955 | MS.gene52540:CDS | 40.0% |
| !! | GTCTTACTTGCTTTTGGCAA+AGG | - | chr3.4:1555077-1555096 | MS.gene52540:CDS | 40.0% |
| !!! | CTGTGATGGACAACTTTTAG+TGG | - | chr3.4:1555364-1555383 | MS.gene52540:CDS | 40.0% |
| !!! | TGCCTTATTTTATGCTTCGG+GGG | - | chr3.4:1555475-1555494 | MS.gene52540:CDS | 40.0% |
| AAAGGAGAATGCCTACTTGC+TGG | - | chr3.4:1555652-1555671 | MS.gene52540:CDS | 45.0% | |
| AACAGTGGGAAATCCATGGA+AGG | - | chr3.4:1555190-1555209 | MS.gene52540:CDS | 45.0% | |
| AAGTAGGCATTCTCCTTTGG+AGG | + | chr3.4:1555650-1555669 | None:intergenic | 45.0% | |
| AGCAAGTAGGCATTCTCCTT+TGG | + | chr3.4:1555653-1555672 | None:intergenic | 45.0% | |
| AGTGGTTCATATTGAGTCCG+AGG | - | chr3.4:1555382-1555401 | MS.gene52540:CDS | 45.0% | |
| CAAGTCGAGTACACCTATGA+TGG | + | chr3.4:1555267-1555286 | None:intergenic | 45.0% | |
| TAGAACTGGAGTTCCTCCAA+AGG | - | chr3.4:1555634-1555653 | MS.gene52540:CDS | 45.0% | |
| TCTATGCATTGAGCAACCTG+AGG | - | chr3.4:1555504-1555523 | MS.gene52540:CDS | 45.0% | |
| TTGCGTGTGCAAGAATTGGA+GGG | - | chr3.4:1554761-1554780 | MS.gene52540:CDS | 45.0% | |
| ! | AAAGCACCAATCCAGCAAGT+AGG | + | chr3.4:1555666-1555685 | None:intergenic | 45.0% |
| ! | AGAATGCCTACTTGCTGGAT+TGG | - | chr3.4:1555657-1555676 | MS.gene52540:CDS | 45.0% |
| !! | ACTTGCTTTTGGCAAAGGCT+CGG | - | chr3.4:1555082-1555101 | MS.gene52540:CDS | 45.0% |
| ATGCATTGAGCAACCTGAGG+AGG | - | chr3.4:1555507-1555526 | MS.gene52540:CDS | 50.0% | |
| ATTGAGCAACCTGAGGAGGT+GGG | - | chr3.4:1555511-1555530 | MS.gene52540:CDS | 50.0% | |
| CTTGCGTGTGCAAGAATTGG+AGG | - | chr3.4:1554760-1554779 | MS.gene52540:CDS | 50.0% | |
| TACACCTATGATGGCCTCGT+TGG | + | chr3.4:1555258-1555277 | None:intergenic | 50.0% | |
| TCGGTCAGCTATGCTGATGA+AGG | + | chr3.4:1554874-1554893 | None:intergenic | 50.0% | |
| TTTCAAAACCCCACCTCCTC+AGG | + | chr3.4:1555523-1555542 | None:intergenic | 50.0% | |
| CATTGAGCAACCTGAGGAGG+TGG | - | chr3.4:1555510-1555529 | MS.gene52540:CDS | 55.0% | |
| GTCACCAACGAGGCCATCAT+AGG | - | chr3.4:1555251-1555270 | MS.gene52540:CDS | 55.0% | |
| TTGAGCAACCTGAGGAGGTG+GGG | - | chr3.4:1555512-1555531 | MS.gene52540:CDS | 55.0% | |
| ! | TGCTTTTGGCAAAGGCTCGG+AGG | - | chr3.4:1555085-1555104 | MS.gene52540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 1554669 | 1555727 | 1554669 | ID=MS.gene52540 |
| chr3.4 | mRNA | 1554669 | 1555727 | 1554669 | ID=MS.gene52540.t1;Parent=MS.gene52540 |
| chr3.4 | exon | 1554669 | 1555727 | 1554669 | ID=MS.gene52540.t1.exon1;Parent=MS.gene52540.t1 |
| chr3.4 | CDS | 1554669 | 1555727 | 1554669 | ID=cds.MS.gene52540.t1;Parent=MS.gene52540.t1 |
| Gene Sequence |
| Protein sequence |
