Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007206.t1 | AES82055.2 | 95.3 | 379 | 16 | 1 | 1 | 379 | 25 | 401 | 2.30E-219 | 771.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007206.t1 | Q9FVS1 | 44.5 | 355 | 183 | 6 | 24 | 374 | 3 | 347 | 1.1e-84 | 315.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007206.t1 | A0A072U447 | 95.3 | 379 | 16 | 1 | 1 | 379 | 1 | 377 | 1.7e-219 | 771.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007206 | MS.gene67877 | PPI |
| MS.gene52540 | MS.gene007206 | PPI |
| MS.gene03004 | MS.gene007206 | PPI |
| MS.gene007206 | MS.gene42891 | PPI |
| MS.gene007206 | MS.gene43440 | PPI |
| MS.gene007206 | MS.gene071037 | PPI |
| MS.gene007206 | MS.gene33922 | PPI |
| MS.gene007206 | MS.gene42893 | PPI |
| MS.gene007206 | MS.gene98671 | PPI |
| MS.gene007206 | MS.gene024275 | PPI |
| MS.gene007206 | MS.gene42889 | PPI |
| MS.gene95088 | MS.gene007206 | PPI |
| MS.gene98670 | MS.gene007206 | PPI |
| MS.gene007206 | MS.gene009311 | PPI |
| MS.gene007206 | MS.gene005636 | PPI |
| MS.gene007206 | MS.gene024343 | PPI |
| MS.gene007206 | MS.gene75065 | PPI |
| MS.gene007206 | MS.gene59977 | PPI |
| MS.gene007206 | MS.gene05311 | PPI |
| MS.gene007206 | MS.gene064044 | PPI |
| MS.gene007206 | MS.gene53925 | PPI |
| MS.gene75067 | MS.gene007206 | PPI |
| MS.gene007206 | MS.gene024341 | PPI |
| MS.gene007206 | MS.gene47120 | PPI |
| MS.gene007206 | MS.gene42887 | PPI |
| MS.gene007206 | MS.gene012753 | PPI |
| MS.gene007206 | MS.gene98673 | PPI |
| MS.gene071039 | MS.gene007206 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007206.t1 | MTR_7g104790 | 95.251 | 379 | 16 | 1 | 1 | 379 | 25 | 401 | 0.0 | 726 |
| MS.gene007206.t1 | MTR_7g104790 | 95.251 | 379 | 16 | 1 | 1 | 379 | 1 | 377 | 0.0 | 724 |
| MS.gene007206.t1 | MTR_7g104785 | 80.716 | 363 | 55 | 3 | 16 | 375 | 17 | 367 | 0.0 | 588 |
| MS.gene007206.t1 | MTR_1g059840 | 64.304 | 381 | 124 | 6 | 2 | 377 | 1 | 374 | 1.56e-173 | 488 |
| MS.gene007206.t1 | MTR_7g104760 | 70.629 | 143 | 25 | 1 | 215 | 357 | 14 | 139 | 2.18e-66 | 207 |
| MS.gene007206.t1 | MTR_2g034630 | 25.623 | 281 | 146 | 11 | 101 | 371 | 124 | 351 | 1.33e-14 | 74.7 |
| MS.gene007206.t1 | MTR_3g114970 | 25.826 | 333 | 185 | 14 | 34 | 329 | 5 | 312 | 1.35e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007206.t1 | AT1G57790 | 44.507 | 355 | 183 | 6 | 24 | 374 | 3 | 347 | 1.61e-100 | 302 |
| MS.gene007206.t1 | AT3G56470 | 41.880 | 351 | 179 | 7 | 32 | 376 | 27 | 358 | 3.22e-82 | 256 |
| MS.gene007206.t1 | AT4G00893 | 39.205 | 352 | 199 | 8 | 33 | 378 | 44 | 386 | 1.04e-78 | 247 |
| MS.gene007206.t1 | AT4G12370 | 38.835 | 309 | 170 | 8 | 81 | 379 | 1 | 300 | 1.34e-67 | 216 |
| MS.gene007206.t1 | AT4G10660 | 41.000 | 300 | 161 | 6 | 62 | 354 | 3 | 293 | 1.64e-67 | 216 |
| MS.gene007206.t1 | AT1G49360 | 34.527 | 391 | 213 | 15 | 8 | 372 | 61 | 434 | 4.46e-52 | 180 |
| MS.gene007206.t1 | AT1G49360 | 34.527 | 391 | 213 | 15 | 8 | 372 | 84 | 457 | 9.42e-52 | 179 |
| MS.gene007206.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.14e-51 | 177 |
| MS.gene007206.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.14e-51 | 177 |
| MS.gene007206.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.14e-51 | 177 |
| MS.gene007206.t1 | AT3G18720 | 34.085 | 355 | 189 | 11 | 36 | 374 | 51 | 376 | 2.17e-50 | 173 |
| MS.gene007206.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 7.81e-48 | 162 |
| MS.gene007206.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 7.81e-48 | 162 |
| MS.gene007206.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 2.72e-35 | 126 |
| MS.gene007206.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 2.72e-35 | 126 |
| MS.gene007206.t1 | AT2G44735 | 40.260 | 154 | 78 | 5 | 139 | 288 | 109 | 252 | 5.49e-23 | 99.4 |
| MS.gene007206.t1 | AT4G10700 | 41.270 | 126 | 66 | 3 | 258 | 376 | 119 | 243 | 1.19e-20 | 90.5 |
| MS.gene007206.t1 | AT4G10700 | 47.312 | 93 | 43 | 2 | 62 | 154 | 3 | 89 | 6.85e-20 | 88.6 |
Find 87 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTAACTTGAAAATTAT+TGG | 0.158009 | 7.1:+6801236 | None:intergenic |
| GAACCACCAAAAGACTTTAT+TGG | 0.163822 | 7.1:-6800975 | MS.gene007206:CDS |
| CAGAAGTTCTCAAAAGTATT+TGG | 0.184683 | 7.1:+6801002 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.1:-6801098 | MS.gene007206:CDS |
| TTTCCATAGAAACGGACTTT+AGG | 0.272121 | 7.1:+6801095 | None:intergenic |
| GATCTAACTTGAAAATTATT+GGG | 0.325599 | 7.1:+6801237 | None:intergenic |
| CTCTCTTTAATCCCTTTACT+AGG | 0.326943 | 7.1:-6801670 | MS.gene007206:CDS |
| CAAGTTAGATCTGACACTAA+TGG | 0.329403 | 7.1:-6801225 | MS.gene007206:CDS |
| ATCCAGCCAATAAAGTCTTT+TGG | 0.339525 | 7.1:+6800969 | None:intergenic |
| AGAACTCTCTGCTAAGCATT+TGG | 0.351257 | 7.1:+6801343 | None:intergenic |
| TTGACCCACTTGAACGTACT+TGG | 0.354769 | 7.1:-6801388 | MS.gene007206:CDS |
| TTCCATAGAAACGGACTTTA+GGG | 0.361226 | 7.1:+6801096 | None:intergenic |
| AACATTCTTCGCATGATGTC+GGG | 0.375799 | 7.1:-6802600 | None:intergenic |
| TCTTGTCTCGGTTGGATGTT+GGG | 0.383783 | 7.1:-6801949 | MS.gene007206:CDS |
| GCTATAAGCACGTGTTATCC+TGG | 0.393896 | 7.1:-6801530 | MS.gene007206:CDS |
| TCTTGTGCTCCAACATCAAC+TGG | 0.401697 | 7.1:-6801596 | MS.gene007206:CDS |
| GAACTCTCTGCTAAGCATTT+GGG | 0.407425 | 7.1:+6801344 | None:intergenic |
| ATGGTTGGTTATTGCTAAAC+CGG | 0.409750 | 7.1:-6801730 | MS.gene007206:CDS |
| GGAATTGTTCTTGTCTCGGT+TGG | 0.421431 | 7.1:-6801957 | MS.gene007206:CDS |
| TTCCCTTGAGTTGCCAGAGT+TGG | 0.426018 | 7.1:-6801780 | MS.gene007206:CDS |
| AACAATTCCAAGACTTCAGC+AGG | 0.429634 | 7.1:+6801971 | None:intergenic |
| TTCTTGTCTCGGTTGGATGT+TGG | 0.436225 | 7.1:-6801950 | MS.gene007206:CDS |
| TCTTGGAATTGTTCTTGTCT+CGG | 0.438217 | 7.1:-6801961 | MS.gene007206:CDS |
| TATTGCTAAACCGGCAGGAC+TGG | 0.447316 | 7.1:-6801721 | MS.gene007206:CDS |
| ACAATTTGGAGCTGCAAACA+TGG | 0.451046 | 7.1:-6802003 | MS.gene007206:CDS |
| TTCGCATGATGTCGGGGAAA+AGG | 0.455236 | 7.1:-6802593 | None:intergenic |
| CTCTGGCAACTCAAGGGAAT+AGG | 0.460842 | 7.1:+6801784 | None:intergenic |
| CGATCTCCCTGCTGAAGTCT+TGG | 0.469551 | 7.1:-6801978 | MS.gene007206:CDS |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.1:-6801197 | MS.gene007206:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.470767 | 7.1:+6801800 | None:intergenic |
| TCTCTTTAATCCCTTTACTA+GGG | 0.471216 | 7.1:-6801669 | MS.gene007206:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.471683 | 7.1:+6801858 | None:intergenic |
| TGATATGTCCTGTCAAACTT+TGG | 0.477303 | 7.1:+6801632 | None:intergenic |
| CTTGAGTTGCCAGAGTTGGA+TGG | 0.483726 | 7.1:-6801776 | MS.gene007206:CDS |
| CCTGTCACGACACTGCTCAC+TGG | 0.484710 | 7.1:+6801031 | None:intergenic |
| GTGATCAGATCCCTAGTAAA+GGG | 0.491655 | 7.1:+6801659 | None:intergenic |
| CTGTCACGACACTGCTCACT+GGG | 0.495007 | 7.1:+6801032 | None:intergenic |
| CACCAAAAGACTTTATTGGC+TGG | 0.495682 | 7.1:-6800971 | MS.gene007206:CDS |
| CTGAGCGACAGAGGTTGGCT+AGG | 0.495793 | 7.1:-6801416 | MS.gene007206:CDS |
| TGAGCGACAGAGGTTGGCTA+GGG | 0.496901 | 7.1:-6801415 | MS.gene007206:CDS |
| CCAACCTCCGCCAGTCCTGC+CGG | 0.497826 | 7.1:+6801711 | None:intergenic |
| CCAGTGAGCAGTGTCGTGAC+AGG | 0.497864 | 7.1:-6801031 | MS.gene007206:CDS |
| CGTGTTTGCTATACAAAAGA+TGG | 0.502296 | 7.1:-6801749 | MS.gene007206:CDS |
| CTATAAGCACGTGTTATCCT+GGG | 0.505414 | 7.1:-6801529 | MS.gene007206:CDS |
| CAGGACTGGCGGAGGTTGGA+CGG | 0.511557 | 7.1:-6801707 | MS.gene007206:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.1:-6801913 | MS.gene007206:CDS |
| CCGGCAGGACTGGCGGAGGT+TGG | 0.523905 | 7.1:-6801711 | MS.gene007206:CDS |
| ATTGTCTGAGCGACAGAGGT+TGG | 0.524197 | 7.1:-6801421 | MS.gene007206:CDS |
| CAAGACTTCAGCAGGGAGAT+CGG | 0.525981 | 7.1:+6801979 | None:intergenic |
| CATTCTAGGACTTACGTCAC+TGG | 0.528125 | 7.1:-6801143 | MS.gene007206:CDS |
| TTGGTTATTGCTAAACCGGC+AGG | 0.529301 | 7.1:-6801726 | MS.gene007206:CDS |
| CGTGATCAGATCCCTAGTAA+AGG | 0.536285 | 7.1:+6801658 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 7.1:+6801601 | None:intergenic |
| TCACGCTGCCAAAGTTTGAC+AGG | 0.539518 | 7.1:-6801640 | MS.gene007206:CDS |
| GTCACTGGAATAATGAGAAA+CGG | 0.542182 | 7.1:-6801128 | MS.gene007206:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.542919 | 7.1:-6801220 | MS.gene007206:CDS |
| TCTGCTAAGCATTTGGGCGG+AGG | 0.544418 | 7.1:+6801350 | None:intergenic |
| CAACATTCTTCGCATGATGT+CGG | 0.545714 | 7.1:-6802601 | None:intergenic |
| TTTGCTATACAAAAGATGGT+TGG | 0.546454 | 7.1:-6801745 | MS.gene007206:CDS |
| CATCCAACTCTGGCAACTCA+AGG | 0.553068 | 7.1:+6801777 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.1:+6801851 | None:intergenic |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.1:-6801213 | MS.gene007206:CDS |
| TGCTAAACCGGCAGGACTGG+CGG | 0.569550 | 7.1:-6801718 | MS.gene007206:CDS |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.1:-6802035 | MS.gene007206:CDS |
| ACACGACATCCATCCAACTC+TGG | 0.576746 | 7.1:+6801767 | None:intergenic |
| ATAACACATCCAGTTGATGT+TGG | 0.578438 | 7.1:+6801587 | None:intergenic |
| CTTGTCTCGGTTGGATGTTG+GGG | 0.581584 | 7.1:-6801948 | MS.gene007206:CDS |
| ATCCAACTCTGGCAACTCAA+GGG | 0.590798 | 7.1:+6801778 | None:intergenic |
| TAAACCGGCAGGACTGGCGG+AGG | 0.593956 | 7.1:-6801715 | MS.gene007206:CDS |
| ACAGTCCAAGTACGTTCAAG+TGG | 0.603382 | 7.1:+6801383 | None:intergenic |
| CAATTTGGAGCTGCAAACAT+GGG | 0.606485 | 7.1:-6802002 | MS.gene007206:CDS |
| GCTCACTGGGATGATATCTA+CGG | 0.610400 | 7.1:+6801045 | None:intergenic |
| ACATTCTTCGCATGATGTCG+GGG | 0.620719 | 7.1:-6802599 | None:intergenic |
| CAGTGAGCAGTGTCGTGACA+GGG | 0.621223 | 7.1:-6801030 | MS.gene007206:CDS |
| GTTGACTACACGTAAAGAAG+TGG | 0.629678 | 7.1:+6801880 | None:intergenic |
| AATAGGTCTTACGCTGCACA+GGG | 0.638547 | 7.1:+6801801 | None:intergenic |
| CTCTCTGCTAAGCATTTGGG+CGG | 0.648219 | 7.1:+6801347 | None:intergenic |
| TTTGTAGTTTATATATGTTG+TGG | 0.650518 | 7.1:-6801266 | MS.gene007206:CDS |
| AGTTTATATATGTTGTGGTG+AGG | 0.651124 | 7.1:-6801261 | MS.gene007206:CDS |
| GAGCGACAGAGGTTGGCTAG+GGG | 0.671202 | 7.1:-6801414 | MS.gene007206:CDS |
| GTGTAGTCAACCAATCACCT+TGG | 0.672007 | 7.1:-6801868 | MS.gene007206:CDS |
| CAGTCCAAGTACGTTCAAGT+GGG | 0.682692 | 7.1:+6801384 | None:intergenic |
| GACCACTGTTAATTATGACG+CGG | 0.704466 | 7.1:-6801495 | MS.gene007206:CDS |
| TATAAGCACGTGTTATCCTG+GGG | 0.707016 | 7.1:-6801528 | MS.gene007206:CDS |
| ACAATTCCAAGACTTCAGCA+GGG | 0.713188 | 7.1:+6801972 | None:intergenic |
| TACCGCGTCATAATTAACAG+TGG | 0.732690 | 7.1:+6801493 | None:intergenic |
| AAATTTATGATAGAGCACAA+AGG | 0.741593 | 7.1:-6801296 | MS.gene007206:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATTATTATTATTGCTA+GGG | - | chr7.1:6801040-6801059 | MS.gene007206:CDS | 15.0% |
| !! | AGCAATAATAATAATATGTA+TGG | + | chr7.1:6801039-6801058 | None:intergenic | 15.0% |
| !! | CAATAATAATAATATGTATG+GGG | + | chr7.1:6801037-6801056 | None:intergenic | 15.0% |
| !! | GCAATAATAATAATATGTAT+GGG | + | chr7.1:6801038-6801057 | None:intergenic | 15.0% |
| !! | TACATATTATTATTATTGCT+AGG | - | chr7.1:6801039-6801058 | MS.gene007206:CDS | 15.0% |
| !! | TTTAGATTGATAAACATATT+TGG | - | chr7.1:6801362-6801381 | MS.gene007206:CDS | 15.0% |
| !!! | AATTTTGTTCAACAATTAAT+TGG | - | chr7.1:6801084-6801103 | MS.gene007206:CDS | 15.0% |
| !! | AGATCTAACTTGAAAATTAT+TGG | + | chr7.1:6802320-6802339 | None:intergenic | 20.0% |
| !! | GATCTAACTTGAAAATTATT+GGG | + | chr7.1:6802319-6802338 | None:intergenic | 20.0% |
| !! | GTTTCATCTATATTTCATAT+TGG | - | chr7.1:6801213-6801232 | MS.gene007206:CDS | 20.0% |
| !! | TATGATTTCTATATCCAATT+CGG | - | chr7.1:6801177-6801196 | MS.gene007206:CDS | 20.0% |
| !! | TTTGTAGTTTATATATGTTG+TGG | - | chr7.1:6802287-6802306 | MS.gene007206:intron | 20.0% |
| !!! | TCAATTTTTTGGCTTAATAA+TGG | - | chr7.1:6801118-6801137 | MS.gene007206:CDS | 20.0% |
| ! | AAATTTATGATAGAGCACAA+AGG | - | chr7.1:6802257-6802276 | MS.gene007206:intron | 25.0% |
| ! | AGATTGATAAACATATTTGG+TGG | - | chr7.1:6801365-6801384 | MS.gene007206:CDS | 25.0% |
| ! | ATAATAATATGTATGGGGTT+AGG | + | chr7.1:6801032-6801051 | None:intergenic | 25.0% |
| ! | CATGAAAAATTTAACCGAAT+TGG | + | chr7.1:6801194-6801213 | None:intergenic | 25.0% |
| ! | CTTATGTATTTCCCAAAAAA+GGG | - | chr7.1:6801708-6801727 | MS.gene007206:CDS | 25.0% |
| ! | GATTGATAAACATATTTGGT+GGG | - | chr7.1:6801366-6801385 | MS.gene007206:CDS | 25.0% |
| ! | TAGTTAATTCACAATAAAGC+TGG | + | chr7.1:6801250-6801269 | None:intergenic | 25.0% |
| !! | ATAAGCTTGTCTTTTCTAAT+GGG | - | chr7.1:6802102-6802121 | MS.gene007206:intron | 25.0% |
| !! | ATATTAATTTTCAGACGTGT+TGG | - | chr7.1:6801987-6802006 | MS.gene007206:CDS | 25.0% |
| !!! | CATAACAATTACCCTTTTTT+GGG | + | chr7.1:6801722-6801741 | None:intergenic | 25.0% |
| !!! | CATTTTTAAGTTGATGATTG+TGG | - | chr7.1:6801271-6801290 | MS.gene007206:CDS | 25.0% |
| !!! | TCATAACAATTACCCTTTTT+TGG | + | chr7.1:6801723-6801742 | None:intergenic | 25.0% |
| !!! | TTGCACTAACTTCAATTTTT+TGG | - | chr7.1:6801107-6801126 | MS.gene007206:CDS | 25.0% |
| AAAAAATGAAGTTAGCTAGC+AGG | + | chr7.1:6801433-6801452 | None:intergenic | 30.0% | |
| AGTTTATATATGTTGTGGTG+AGG | - | chr7.1:6802292-6802311 | MS.gene007206:intron | 30.0% | |
| GCTTATGTATTTCCCAAAAA+AGG | - | chr7.1:6801707-6801726 | MS.gene007206:CDS | 30.0% | |
| TCTCTTTAATCCCTTTACTA+GGG | - | chr7.1:6801884-6801903 | MS.gene007206:CDS | 30.0% | |
| TGAGGTAAAAAGCAACAATT+TGG | - | chr7.1:6801536-6801555 | MS.gene007206:CDS | 30.0% | |
| TTGTTGAACAAAATTGAGAG+TGG | + | chr7.1:6801079-6801098 | None:intergenic | 30.0% | |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr7.1:6802101-6802120 | MS.gene007206:intron | 30.0% |
| ! | TTTGCTATACAAAAGATGGT+TGG | - | chr7.1:6801808-6801827 | MS.gene007206:CDS | 30.0% |
| !! | CAAATACTTTTGAGAACTTC+TGG | - | chr7.1:6802552-6802571 | MS.gene007206:intron | 30.0% |
| !! | CAGAAGTTCTCAAAAGTATT+TGG | + | chr7.1:6802554-6802573 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr7.1:6802396-6802415 | MS.gene007206:intron | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.1:6801698-6801717 | None:intergenic | 35.0% | |
| AATATGTATGGGGTTAGGTT+AGG | + | chr7.1:6801027-6801046 | None:intergenic | 35.0% | |
| AGTAAACAGAACAGAAACAG+TGG | + | chr7.1:6801328-6801347 | None:intergenic | 35.0% | |
| ATATGTATGGGGTTAGGTTA+GGG | + | chr7.1:6801026-6801045 | None:intergenic | 35.0% | |
| ATTCACAATAAAGCTGGTCA+TGG | + | chr7.1:6801244-6801263 | None:intergenic | 35.0% | |
| CAAGTTAGATCTGACACTAA+TGG | - | chr7.1:6802328-6802347 | MS.gene007206:intron | 35.0% | |
| CTCTCTTTAATCCCTTTACT+AGG | - | chr7.1:6801883-6801902 | MS.gene007206:CDS | 35.0% | |
| GAACCACCAAAAGACTTTAT+TGG | - | chr7.1:6802578-6802597 | MS.gene007206:CDS | 35.0% | |
| GTAAACAGAACAGAAACAGT+GGG | + | chr7.1:6801327-6801346 | None:intergenic | 35.0% | |
| GTCACTGGAATAATGAGAAA+CGG | - | chr7.1:6802425-6802444 | MS.gene007206:intron | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr7.1:6802333-6802352 | MS.gene007206:intron | 35.0% | |
| TCTTGGAATTGTTCTTGTCT+CGG | - | chr7.1:6801592-6801611 | MS.gene007206:CDS | 35.0% | |
| TGATATGTCCTGTCAAACTT+TGG | + | chr7.1:6801924-6801943 | None:intergenic | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr7.1:6801705-6801724 | None:intergenic | 35.0% | |
| ! | ATAACACATCCAGTTGATGT+TGG | + | chr7.1:6801969-6801988 | None:intergenic | 35.0% |
| ! | ATCCAGCCAATAAAGTCTTT+TGG | + | chr7.1:6802587-6802606 | None:intergenic | 35.0% |
| ! | ATGGTTGGTTATTGCTAAAC+CGG | - | chr7.1:6801823-6801842 | MS.gene007206:CDS | 35.0% |
| ! | GATAAACATATTTGGTGGGA+TGG | - | chr7.1:6801370-6801389 | MS.gene007206:CDS | 35.0% |
| ! | TGCAACGTTTTCCATAGAAA+CGG | + | chr7.1:6802469-6802488 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr7.1:6802460-6802479 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr7.1:6802461-6802480 | None:intergenic | 35.0% |
| !! | CGTGTTTGCTATACAAAAGA+TGG | - | chr7.1:6801804-6801823 | MS.gene007206:CDS | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr7.1:6802356-6802375 | MS.gene007206:intron | 40.0% | |
| AACAATTCCAAGACTTCAGC+AGG | + | chr7.1:6801585-6801604 | None:intergenic | 40.0% | |
| ACAATTCCAAGACTTCAGCA+GGG | + | chr7.1:6801584-6801603 | None:intergenic | 40.0% | |
| AGAACTCTCTGCTAAGCATT+TGG | + | chr7.1:6802213-6802232 | None:intergenic | 40.0% | |
| AGAGTTCTACTGCCAAAAAC+TGG | - | chr7.1:6802225-6802244 | MS.gene007206:intron | 40.0% | |
| CACCAAAAGACTTTATTGGC+TGG | - | chr7.1:6802582-6802601 | MS.gene007206:CDS | 40.0% | |
| CTATAAGCACGTGTTATCCT+GGG | - | chr7.1:6802024-6802043 | MS.gene007206:CDS | 40.0% | |
| GAACTCTCTGCTAAGCATTT+GGG | + | chr7.1:6802212-6802231 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr7.1:6802340-6802359 | MS.gene007206:intron | 40.0% | |
| GACCACTGTTAATTATGACG+CGG | - | chr7.1:6802058-6802077 | MS.gene007206:intron | 40.0% | |
| GTGATCAGATCCCTAGTAAA+GGG | + | chr7.1:6801897-6801916 | None:intergenic | 40.0% | |
| GTTATCCTGGGGAAAAAGAA+TGG | - | chr7.1:6802036-6802055 | MS.gene007206:CDS | 40.0% | |
| GTTGACTACACGTAAAGAAG+TGG | + | chr7.1:6801676-6801695 | None:intergenic | 40.0% | |
| TACCGCGTCATAATTAACAG+TGG | + | chr7.1:6802063-6802082 | None:intergenic | 40.0% | |
| TATAAGCACGTGTTATCCTG+GGG | - | chr7.1:6802025-6802044 | MS.gene007206:CDS | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr7.1:6802455-6802474 | MS.gene007206:intron | 40.0% | |
| ! | ACAATTTGGAGCTGCAAACA+TGG | - | chr7.1:6801550-6801569 | MS.gene007206:CDS | 40.0% |
| ! | CAATTTGGAGCTGCAAACAT+GGG | - | chr7.1:6801551-6801570 | MS.gene007206:CDS | 40.0% |
| ! | CAGCCAATAAAGTCTTTTGG+TGG | + | chr7.1:6802584-6802603 | None:intergenic | 40.0% |
| ! | TTTTATTGTCTGAGCGACAG+AGG | - | chr7.1:6802128-6802147 | MS.gene007206:intron | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | + | chr7.1:6801755-6801774 | None:intergenic | 45.0% | |
| ACAGTCCAAGTACGTTCAAG+TGG | + | chr7.1:6802173-6802192 | None:intergenic | 45.0% | |
| ACTGCCAAAAACTGGTCGAA+GGG | - | chr7.1:6802233-6802252 | MS.gene007206:intron | 45.0% | |
| ATCCAACTCTGGCAACTCAA+GGG | + | chr7.1:6801778-6801797 | None:intergenic | 45.0% | |
| CAGTCCAAGTACGTTCAAGT+GGG | + | chr7.1:6802172-6802191 | None:intergenic | 45.0% | |
| CGTGATCAGATCCCTAGTAA+AGG | + | chr7.1:6801898-6801917 | None:intergenic | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.1:6801640-6801659 | MS.gene007206:CDS | 45.0% | |
| GCTATAAGCACGTGTTATCC+TGG | - | chr7.1:6802023-6802042 | MS.gene007206:CDS | 45.0% | |
| GCTCACTGGGATGATATCTA+CGG | + | chr7.1:6802511-6802530 | None:intergenic | 45.0% | |
| GGAATTGTTCTTGTCTCGGT+TGG | - | chr7.1:6801596-6801615 | MS.gene007206:CDS | 45.0% | |
| GTGTAGTCAACCAATCACCT+TGG | - | chr7.1:6801685-6801704 | MS.gene007206:CDS | 45.0% | |
| TACTGCCAAAAACTGGTCGA+AGG | - | chr7.1:6802232-6802251 | MS.gene007206:intron | 45.0% | |
| TCTTGTCTCGGTTGGATGTT+GGG | - | chr7.1:6801604-6801623 | MS.gene007206:CDS | 45.0% | |
| TCTTGTGCTCCAACATCAAC+TGG | - | chr7.1:6801957-6801976 | MS.gene007206:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr7.1:6801955-6801974 | None:intergenic | 45.0% | |
| TTCTTGTCTCGGTTGGATGT+TGG | - | chr7.1:6801603-6801622 | MS.gene007206:CDS | 45.0% | |
| TTGACCCACTTGAACGTACT+TGG | - | chr7.1:6802165-6802184 | MS.gene007206:intron | 45.0% | |
| TTGGTTATTGCTAAACCGGC+AGG | - | chr7.1:6801827-6801846 | MS.gene007206:CDS | 45.0% | |
| ! | TTTCCCCTTCGACCAGTTTT+TGG | + | chr7.1:6802240-6802259 | None:intergenic | 45.0% |
| !! | CATTCTAGGACTTACGTCAC+TGG | - | chr7.1:6802410-6802429 | MS.gene007206:intron | 45.0% |
| ACACGACATCCATCCAACTC+TGG | + | chr7.1:6801789-6801808 | None:intergenic | 50.0% | |
| ATTGTCTGAGCGACAGAGGT+TGG | - | chr7.1:6802132-6802151 | MS.gene007206:intron | 50.0% | |
| CAAGACTTCAGCAGGGAGAT+CGG | + | chr7.1:6801577-6801596 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr7.1:6801518-6801537 | MS.gene007206:CDS | 50.0% | |
| CATCCAACTCTGGCAACTCA+AGG | + | chr7.1:6801779-6801798 | None:intergenic | 50.0% | |
| CTCTCTGCTAAGCATTTGGG+CGG | + | chr7.1:6802209-6802228 | None:intergenic | 50.0% | |
| CTCTGGCAACTCAAGGGAAT+AGG | + | chr7.1:6801772-6801791 | None:intergenic | 50.0% | |
| CTGCCAAAAACTGGTCGAAG+GGG | - | chr7.1:6802234-6802253 | MS.gene007206:intron | 50.0% | |
| CTTGTCTCGGTTGGATGTTG+GGG | - | chr7.1:6801605-6801624 | MS.gene007206:CDS | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr7.1:6801756-6801775 | None:intergenic | 50.0% | |
| TATTGCTAAACCGGCAGGAC+TGG | - | chr7.1:6801832-6801851 | MS.gene007206:CDS | 50.0% | |
| TCACGCTGCCAAAGTTTGAC+AGG | - | chr7.1:6801913-6801932 | MS.gene007206:CDS | 50.0% | |
| ! | CTTGAGTTGCCAGAGTTGGA+TGG | - | chr7.1:6801777-6801796 | MS.gene007206:CDS | 50.0% |
| ! | GTGGTCCATTCTTTTTCCCC+AGG | + | chr7.1:6802044-6802063 | None:intergenic | 50.0% |
| ! | TTCCCTTGAGTTGCCAGAGT+TGG | - | chr7.1:6801773-6801792 | MS.gene007206:CDS | 50.0% |
| CAGTGAGCAGTGTCGTGACA+GGG | - | chr7.1:6802523-6802542 | MS.gene007206:intron | 55.0% | |
| CGATCTCCCTGCTGAAGTCT+TGG | - | chr7.1:6801575-6801594 | MS.gene007206:CDS | 55.0% | |
| CTGTCACGACACTGCTCACT+GGG | + | chr7.1:6802524-6802543 | None:intergenic | 55.0% | |
| TCTGCTAAGCATTTGGGCGG+AGG | + | chr7.1:6802206-6802225 | None:intergenic | 55.0% | |
| ! | TGAGCGACAGAGGTTGGCTA+GGG | - | chr7.1:6802138-6802157 | MS.gene007206:intron | 55.0% |
| CCAGTGAGCAGTGTCGTGAC+AGG | - | chr7.1:6802522-6802541 | MS.gene007206:intron | 60.0% | |
| CCTGTCACGACACTGCTCAC+TGG | + | chr7.1:6802525-6802544 | None:intergenic | 60.0% | |
| TGCTAAACCGGCAGGACTGG+CGG | - | chr7.1:6801835-6801854 | MS.gene007206:CDS | 60.0% | |
| ! | CTGAGCGACAGAGGTTGGCT+AGG | - | chr7.1:6802137-6802156 | MS.gene007206:intron | 60.0% |
| ! | GAGCGACAGAGGTTGGCTAG+GGG | - | chr7.1:6802139-6802158 | MS.gene007206:intron | 60.0% |
| ! | CAGGACTGGCGGAGGTTGGA+CGG | - | chr7.1:6801846-6801865 | MS.gene007206:CDS | 65.0% |
| ! | TAAACCGGCAGGACTGGCGG+AGG | - | chr7.1:6801838-6801857 | MS.gene007206:CDS | 65.0% |
| CCAACCTCCGCCAGTCCTGC+CGG | + | chr7.1:6801845-6801864 | None:intergenic | 70.0% | |
| ! | CCGGCAGGACTGGCGGAGGT+TGG | - | chr7.1:6801842-6801861 | MS.gene007206:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6800965 | 6802610 | 6800965 | ID=MS.gene007206 |
| chr7.1 | mRNA | 6800965 | 6802610 | 6800965 | ID=MS.gene007206.t1;Parent=MS.gene007206 |
| chr7.1 | exon | 6802573 | 6802610 | 6802573 | ID=MS.gene007206.t1.exon1;Parent=MS.gene007206.t1 |
| chr7.1 | CDS | 6802573 | 6802610 | 6802573 | ID=cds.MS.gene007206.t1;Parent=MS.gene007206.t1 |
| chr7.1 | exon | 6800965 | 6802066 | 6800965 | ID=MS.gene007206.t1.exon2;Parent=MS.gene007206.t1 |
| chr7.1 | CDS | 6800965 | 6802066 | 6800965 | ID=cds.MS.gene007206.t1;Parent=MS.gene007206.t1 |
| Gene Sequence |
| Protein sequence |
