Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007207.t1 | AES82055.2 | 77.7 | 382 | 75 | 7 | 1 | 378 | 26 | 401 | 6.30E-169 | 603.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007207.t1 | Q9FVS1 | 45.2 | 345 | 175 | 8 | 33 | 373 | 13 | 347 | 5.7e-78 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007207.t1 | A0A072U447 | 77.7 | 382 | 75 | 7 | 1 | 378 | 2 | 377 | 4.6e-169 | 603.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95088 | MS.gene007207 | PPI |
| MS.gene007207 | MS.gene42891 | PPI |
| MS.gene007207 | MS.gene43440 | PPI |
| MS.gene007207 | MS.gene071037 | PPI |
| MS.gene007207 | MS.gene024275 | PPI |
| MS.gene98670 | MS.gene007207 | PPI |
| MS.gene007207 | MS.gene98671 | PPI |
| MS.gene064044 | MS.gene007207 | PPI |
| MS.gene007207 | MS.gene42889 | PPI |
| MS.gene007207 | MS.gene009311 | PPI |
| MS.gene007207 | MS.gene005636 | PPI |
| MS.gene007207 | MS.gene53925 | PPI |
| MS.gene007207 | MS.gene024343 | PPI |
| MS.gene007207 | MS.gene75065 | PPI |
| MS.gene071039 | MS.gene007207 | PPI |
| MS.gene52540 | MS.gene007207 | PPI |
| MS.gene007207 | MS.gene05311 | PPI |
| MS.gene75067 | MS.gene007207 | PPI |
| MS.gene007207 | MS.gene98673 | PPI |
| MS.gene007207 | MS.gene024341 | PPI |
| MS.gene007207 | MS.gene47120 | PPI |
| MS.gene007207 | MS.gene42887 | PPI |
| MS.gene007207 | MS.gene012753 | PPI |
| MS.gene59977 | MS.gene007207 | PPI |
| MS.gene03004 | MS.gene007207 | PPI |
| MS.gene33922 | MS.gene007207 | PPI |
| MS.gene007207 | MS.gene42893 | PPI |
| MS.gene007207 | MS.gene67877 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007207.t1 | MTR_7g104790 | 77.989 | 368 | 71 | 7 | 15 | 378 | 40 | 401 | 0.0 | 575 |
| MS.gene007207.t1 | MTR_7g104790 | 77.989 | 368 | 71 | 7 | 15 | 378 | 16 | 377 | 0.0 | 573 |
| MS.gene007207.t1 | MTR_7g104785 | 76.243 | 362 | 75 | 5 | 15 | 375 | 17 | 368 | 0.0 | 538 |
| MS.gene007207.t1 | MTR_1g059840 | 61.214 | 379 | 139 | 5 | 1 | 376 | 1 | 374 | 2.57e-163 | 462 |
| MS.gene007207.t1 | MTR_7g104760 | 81.944 | 144 | 9 | 1 | 214 | 357 | 14 | 140 | 1.25e-79 | 241 |
| MS.gene007207.t1 | MTR_2g020080 | 29.297 | 256 | 155 | 10 | 79 | 321 | 3 | 245 | 2.06e-16 | 79.3 |
| MS.gene007207.t1 | MTR_3g114970 | 25.672 | 335 | 183 | 16 | 33 | 328 | 5 | 312 | 3.56e-13 | 70.5 |
| MS.gene007207.t1 | MTR_2g034630 | 26.316 | 266 | 129 | 11 | 115 | 370 | 143 | 351 | 1.17e-12 | 68.9 |
| MS.gene007207.t1 | MTR_2g015760 | 33.784 | 148 | 85 | 6 | 31 | 171 | 13 | 154 | 1.83e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007207.t1 | AT1G57790 | 45.217 | 345 | 175 | 8 | 33 | 373 | 13 | 347 | 1.24e-92 | 281 |
| MS.gene007207.t1 | AT3G56470 | 39.884 | 346 | 185 | 9 | 31 | 371 | 27 | 354 | 9.07e-78 | 244 |
| MS.gene007207.t1 | AT4G00893 | 38.504 | 361 | 209 | 8 | 18 | 373 | 30 | 382 | 1.43e-72 | 231 |
| MS.gene007207.t1 | AT4G10660 | 41.275 | 298 | 163 | 7 | 61 | 353 | 3 | 293 | 3.00e-64 | 207 |
| MS.gene007207.t1 | AT4G12370 | 39.739 | 307 | 170 | 9 | 80 | 378 | 1 | 300 | 1.66e-62 | 202 |
| MS.gene007207.t1 | AT1G49360 | 33.676 | 389 | 221 | 14 | 10 | 375 | 64 | 438 | 7.85e-49 | 171 |
| MS.gene007207.t1 | AT1G49360 | 33.676 | 389 | 221 | 14 | 10 | 375 | 87 | 461 | 8.66e-49 | 172 |
| MS.gene007207.t1 | AT1G49360 | 34.986 | 363 | 201 | 13 | 36 | 375 | 8 | 358 | 1.17e-48 | 169 |
| MS.gene007207.t1 | AT1G49360 | 34.986 | 363 | 201 | 13 | 36 | 375 | 8 | 358 | 1.17e-48 | 169 |
| MS.gene007207.t1 | AT1G49360 | 34.986 | 363 | 201 | 13 | 36 | 375 | 8 | 358 | 1.17e-48 | 169 |
| MS.gene007207.t1 | AT4G10695 | 41.538 | 195 | 110 | 3 | 45 | 239 | 1 | 191 | 6.21e-43 | 149 |
| MS.gene007207.t1 | AT4G10695 | 41.538 | 195 | 110 | 3 | 45 | 239 | 1 | 191 | 6.21e-43 | 149 |
| MS.gene007207.t1 | AT3G18720 | 33.660 | 306 | 181 | 10 | 35 | 327 | 51 | 347 | 9.21e-43 | 153 |
| MS.gene007207.t1 | AT4G12382 | 43.750 | 128 | 70 | 1 | 32 | 159 | 9 | 134 | 2.04e-32 | 119 |
| MS.gene007207.t1 | AT4G12382 | 43.750 | 128 | 70 | 1 | 32 | 159 | 9 | 134 | 2.04e-32 | 119 |
| MS.gene007207.t1 | AT4G10700 | 42.742 | 124 | 58 | 3 | 257 | 371 | 119 | 238 | 2.25e-21 | 92.4 |
| MS.gene007207.t1 | AT4G10700 | 43.182 | 88 | 48 | 1 | 61 | 148 | 3 | 88 | 2.56e-18 | 84.0 |
| MS.gene007207.t1 | AT2G44735 | 34.395 | 157 | 87 | 5 | 134 | 287 | 109 | 252 | 1.13e-15 | 78.2 |
| MS.gene007207.t1 | AT4G22660 | 32.192 | 146 | 80 | 6 | 32 | 165 | 9 | 147 | 1.06e-12 | 69.3 |
| MS.gene007207.t1 | AT5G66830 | 24.107 | 336 | 197 | 17 | 33 | 328 | 20 | 337 | 5.79e-11 | 63.9 |
| MS.gene007207.t1 | AT4G22035 | 29.921 | 127 | 82 | 3 | 32 | 154 | 12 | 135 | 5.88e-11 | 62.8 |
Find 83 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGAATTTCCCTTTA+AGG | 0.142001 | 7.1:+6810624 | None:intergenic |
| AGATCTAGCTTGAAAATTAT+TGG | 0.205921 | 7.1:+6810221 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.1:-6810083 | MS.gene007207:CDS |
| TTCATCAATCGCACGATGTC+GGG | 0.268005 | 7.1:-6811412 | None:intergenic |
| TTTCCATAGAAACGGACTTT+AGG | 0.268523 | 7.1:+6810080 | None:intergenic |
| ATCACACTTCCAAGCCTTAA+AGG | 0.269832 | 7.1:-6810638 | MS.gene007207:CDS |
| GACCTATTCCGTTGAGTTGC+CGG | 0.312907 | 7.1:-6810771 | MS.gene007207:CDS |
| ATCCATCCAGCAAAGTCTTT+TGG | 0.316332 | 7.1:+6809954 | None:intergenic |
| AGAATTGTTCTTGTCTCGTT+TGG | 0.335751 | 7.1:-6810942 | MS.gene007207:CDS |
| GATCTAGCTTGAAAATTATT+GGG | 0.338308 | 7.1:+6810222 | None:intergenic |
| CTCTATCATAAAACTCTCTT+TGG | 0.347384 | 7.1:+6810289 | None:intergenic |
| TTCCATAGAAACGGACTTTA+GGG | 0.349581 | 7.1:+6810081 | None:intergenic |
| AGAACTCTCTACTAGGCATT+TGG | 0.354406 | 7.1:+6810328 | None:intergenic |
| TCTTGTCTCGTTTGGATGTT+GGG | 0.359047 | 7.1:-6810934 | MS.gene007207:CDS |
| CACAAGAAAAGGCAGCAATT+TGG | 0.361791 | 7.1:+6810609 | None:intergenic |
| GACACTGTTTCTCATAATTC+CGG | 0.366130 | 7.1:+6810109 | None:intergenic |
| TGTTTATGGGCTGCCGCCAC+TGG | 0.381404 | 7.1:+6810696 | None:intergenic |
| ACACTCCAAGTATATTCAAT+TGG | 0.383118 | 7.1:+6810368 | None:intergenic |
| CAAGCTAGATCTGACACTAA+TGG | 0.386785 | 7.1:-6810210 | MS.gene007207:CDS |
| GCTTAGTGGGATAATATCTA+TGG | 0.399107 | 7.1:+6810030 | None:intergenic |
| ACTATAAACGTATGTTATCA+TGG | 0.409741 | 7.1:-6810524 | MS.gene007207:CDS |
| TTGACCCAATTGAATATACT+TGG | 0.417142 | 7.1:-6810373 | MS.gene007207:CDS |
| TTCCGTTGAGTTGCCGGAGT+TGG | 0.418573 | 7.1:-6810765 | MS.gene007207:CDS |
| TGGAATTTCCCTTTAAGGCT+TGG | 0.422941 | 7.1:+6810629 | None:intergenic |
| GAACTCTCTACTAGGCATTT+GGG | 0.427224 | 7.1:+6810329 | None:intergenic |
| TTCTTGTCTCGTTTGGATGT+TGG | 0.428497 | 7.1:-6810935 | MS.gene007207:CDS |
| GAACCACCAAAAGACTTTGC+TGG | 0.430582 | 7.1:-6809960 | MS.gene007207:CDS |
| TCGCAATAGAACTCTCTACT+AGG | 0.437041 | 7.1:+6810321 | None:intergenic |
| CATAAGTTCTCAAAAGCATC+TGG | 0.443325 | 7.1:+6809987 | None:intergenic |
| TCACACTTCCAAGCCTTAAA+GGG | 0.458726 | 7.1:-6810637 | MS.gene007207:CDS |
| CTCCGGCAACTCAACGGAAT+AGG | 0.459249 | 7.1:+6810769 | None:intergenic |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.1:-6810182 | MS.gene007207:CDS |
| AACAATTCTAAGAGTTCCAC+AGG | 0.473018 | 7.1:+6810956 | None:intergenic |
| GTTATCATGGGGCAAAAGAA+TGG | 0.474220 | 7.1:-6810511 | MS.gene007207:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.482476 | 7.1:+6810843 | None:intergenic |
| TGATGTTGGAGCACAAGAAA+AGG | 0.485677 | 7.1:+6810598 | None:intergenic |
| GTGATCAGATCACTAGTAAA+GGG | 0.487707 | 7.1:+6810656 | None:intergenic |
| CACTCCAAGTATATTCAATT+GGG | 0.492084 | 7.1:+6810369 | None:intergenic |
| CGTGTTAGCTATACAAAAGA+TGG | 0.492384 | 7.1:-6810734 | MS.gene007207:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.493022 | 7.1:+6810785 | None:intergenic |
| CAAGTCAAGACACTGCTTAG+TGG | 0.500747 | 7.1:+6810016 | None:intergenic |
| TAAGCCACACAGGTTGCCTA+GGG | 0.505306 | 7.1:-6810400 | MS.gene007207:CDS |
| TGTGATCAGATCACTAGTAA+AGG | 0.505810 | 7.1:+6810655 | None:intergenic |
| CTATAAACGTATGTTATCAT+GGG | 0.510040 | 7.1:-6810523 | MS.gene007207:CDS |
| TTAAGCCACACAGGTTGCCT+AGG | 0.512634 | 7.1:-6810401 | MS.gene007207:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.1:-6810898 | MS.gene007207:CDS |
| CACTAAGCAGTGTCTTGACT+TGG | 0.516461 | 7.1:-6810015 | MS.gene007207:CDS |
| TAAGAGTTCCACAGGGAGAT+CGG | 0.527538 | 7.1:+6810964 | None:intergenic |
| CATTCTAGGTCTTATGTCAC+CGG | 0.533791 | 7.1:-6810128 | MS.gene007207:CDS |
| TGTTTGCAAGAGATGGTGTT+CGG | 0.538924 | 7.1:-6810891 | MS.gene007207:CDS |
| AAGTCAAGACACTGCTTAGT+GGG | 0.540315 | 7.1:+6810017 | None:intergenic |
| GTTGAGTTGCCGGAGTTGGA+TGG | 0.545335 | 7.1:-6810761 | MS.gene007207:CDS |
| TGCAACGCTTTCCATAGAAA+CGG | 0.557633 | 7.1:+6810072 | None:intergenic |
| TCATCAATCGCACGATGTCG+GGG | 0.560745 | 7.1:-6811411 | None:intergenic |
| CACCAAAAGACTTTGCTGGA+TGG | 0.563357 | 7.1:-6809956 | MS.gene007207:CDS |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.1:-6810198 | MS.gene007207:CDS |
| TCTACTAGGCATTTGGGCGG+AGG | 0.571620 | 7.1:+6810335 | None:intergenic |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.1:-6811020 | MS.gene007207:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.579771 | 7.1:-6810205 | MS.gene007207:CDS |
| CGATGTCGGGGAATAGAAGA+AGG | 0.579884 | 7.1:-6811399 | MS.gene007207:CDS |
| ATCCAACTCCGGCAACTCAA+CGG | 0.581410 | 7.1:+6810763 | None:intergenic |
| TTAGCTATACAAAAGATGGT+TGG | 0.586579 | 7.1:-6810730 | MS.gene007207:CDS |
| TCTGGGAAATACATAAGCCA+AGG | 0.590834 | 7.1:+6810836 | None:intergenic |
| ATAACACAGTCAGTTGATGT+TGG | 0.598284 | 7.1:+6810584 | None:intergenic |
| CAATTGGGTCAAACACCCCT+AGG | 0.600359 | 7.1:+6810384 | None:intergenic |
| GTCGACTACACGTACAGAAG+TGG | 0.602304 | 7.1:+6810865 | None:intergenic |
| CTTGTCTCGTTTGGATGTTG+GGG | 0.612760 | 7.1:-6810933 | MS.gene007207:CDS |
| GGTTATTGCTAAACCAGTGG+CGG | 0.617651 | 7.1:-6810709 | MS.gene007207:CDS |
| ACACGACATCCATCCAACTC+CGG | 0.622138 | 7.1:+6810752 | None:intergenic |
| ACAATTTGGAGCTGCAAACG+TGG | 0.624516 | 7.1:-6810988 | MS.gene007207:CDS |
| GTTGGTTATTGCTAAACCAG+TGG | 0.638727 | 7.1:-6810712 | MS.gene007207:CDS |
| TATAAACGTATGTTATCATG+GGG | 0.645070 | 7.1:-6810522 | MS.gene007207:CDS |
| TTTGTAATTCATATATGTTG+TGG | 0.647853 | 7.1:-6810251 | MS.gene007207:CDS |
| AATAGGTCTTACGCTGCACA+GGG | 0.650966 | 7.1:+6810786 | None:intergenic |
| TGTTTATCGTAACAACAGCT+CGG | 0.669627 | 7.1:-6810483 | MS.gene007207:CDS |
| CTCTCTACTAGGCATTTGGG+CGG | 0.676938 | 7.1:+6810332 | None:intergenic |
| AATTCATATATGTTGTGGTG+AGG | 0.682117 | 7.1:-6810246 | MS.gene007207:CDS |
| AACGTGGTCCGATCTCCCTG+TGG | 0.695767 | 7.1:-6810972 | MS.gene007207:CDS |
| GCTGTTGTTACGATAAACAG+TGG | 0.718462 | 7.1:+6810487 | None:intergenic |
| GTGTAGTCGACCAATCACCT+TGG | 0.730923 | 7.1:-6810853 | MS.gene007207:CDS |
| AAGCCACACAGGTTGCCTAG+GGG | 0.732552 | 7.1:-6810399 | MS.gene007207:CDS |
| ACACCCCTAGGCAACCTGTG+TGG | 0.745993 | 7.1:+6810396 | None:intergenic |
| ACAATTCTAAGAGTTCCACA+GGG | 0.769621 | 7.1:+6810957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAGAAAAATATTGTTTA+TGG | + | chr7.1:6810668-6810687 | None:intergenic | 15.0% |
| !! | AAGAGAAAAATATTGTTTAT+GGG | + | chr7.1:6810667-6810686 | None:intergenic | 15.0% |
| !!! | TGTGTTATAGTATTAATTTT+TGG | - | chr7.1:6810778-6810797 | MS.gene007207:CDS | 15.0% |
| !! | TATAATATTTCAATGCTCAA+CGG | + | chr7.1:6810070-6810089 | None:intergenic | 20.0% |
| !! | TTTGTAATTCATATATGTTG+TGG | - | chr7.1:6811096-6811115 | MS.gene007207:intron | 20.0% |
| !!! | GAAATATTATATTTGGCTTA+GGG | - | chr7.1:6810079-6810098 | MS.gene007207:CDS | 20.0% |
| !!! | GAGCATTGAAATATTATATT+TGG | - | chr7.1:6810072-6810091 | MS.gene007207:CDS | 20.0% |
| !!! | TGAAATATTATATTTGGCTT+AGG | - | chr7.1:6810078-6810097 | MS.gene007207:CDS | 20.0% |
| ! | ACTATAAACGTATGTTATCA+TGG | - | chr7.1:6810823-6810842 | MS.gene007207:CDS | 25.0% |
| ! | CTATAAACGTATGTTATCAT+GGG | - | chr7.1:6810824-6810843 | MS.gene007207:CDS | 25.0% |
| ! | TATAAACGTATGTTATCATG+GGG | - | chr7.1:6810825-6810844 | MS.gene007207:CDS | 25.0% |
| !! | AGATCTAGCTTGAAAATTAT+TGG | + | chr7.1:6811129-6811148 | None:intergenic | 25.0% |
| !! | CAAAACAATTACTGTTTTCT+GGG | + | chr7.1:6810531-6810550 | None:intergenic | 25.0% |
| !! | GATCTAGCTTGAAAATTATT+GGG | + | chr7.1:6811128-6811147 | None:intergenic | 25.0% |
| !! | TCAAAACAATTACTGTTTTC+TGG | + | chr7.1:6810532-6810551 | None:intergenic | 25.0% |
| !!! | AGTTTTATGATAGAGTACAA+AGG | - | chr7.1:6811066-6811085 | MS.gene007207:intron | 25.0% |
| !!! | GTATTAATTTTTGGACATCT+TGG | - | chr7.1:6810787-6810806 | MS.gene007207:CDS | 25.0% |
| AACAAACGAATTTAGTTAGC+AGG | + | chr7.1:6810242-6810261 | None:intergenic | 30.0% | |
| AATTCATATATGTTGTGGTG+AGG | - | chr7.1:6811101-6811120 | MS.gene007207:intron | 30.0% | |
| ACACTCCAAGTATATTCAAT+TGG | + | chr7.1:6810982-6811001 | None:intergenic | 30.0% | |
| CACTCCAAGTATATTCAATT+GGG | + | chr7.1:6810981-6811000 | None:intergenic | 30.0% | |
| CTCTATCATAAAACTCTCTT+TGG | + | chr7.1:6811061-6811080 | None:intergenic | 30.0% | |
| TGAGGTAAAAAGTGACAATT+TGG | - | chr7.1:6810345-6810364 | MS.gene007207:CDS | 30.0% | |
| TTAGCTATACAAAAGATGGT+TGG | - | chr7.1:6810617-6810636 | MS.gene007207:CDS | 30.0% | |
| TTGACCCAATTGAATATACT+TGG | - | chr7.1:6810974-6810993 | MS.gene007207:CDS | 30.0% | |
| ! | CAATTTGGAATTTCCCTTTA+AGG | + | chr7.1:6810726-6810745 | None:intergenic | 30.0% |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr7.1:6810910-6810929 | MS.gene007207:CDS | 30.0% |
| ! | TTTTATTGTTTAAGCCACAC+AGG | - | chr7.1:6810937-6810956 | MS.gene007207:CDS | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr7.1:6811205-6811224 | MS.gene007207:intron | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.1:6810507-6810526 | None:intergenic | 35.0% | |
| AGAATTGTTCTTGTCTCGTT+TGG | - | chr7.1:6810405-6810424 | MS.gene007207:CDS | 35.0% | |
| CGTGTTAGCTATACAAAAGA+TGG | - | chr7.1:6810613-6810632 | MS.gene007207:CDS | 35.0% | |
| GAGTTCTATTGCGAAAAACT+CGG | - | chr7.1:6811035-6811054 | MS.gene007207:intron | 35.0% | |
| GCTTAGTGGGATAATATCTA+TGG | + | chr7.1:6811320-6811339 | None:intergenic | 35.0% | |
| GTGATCAGATCACTAGTAAA+GGG | + | chr7.1:6810694-6810713 | None:intergenic | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr7.1:6811142-6811161 | MS.gene007207:intron | 35.0% | |
| TATCGAGGGAAAAAACATTG+AGG | + | chr7.1:6810034-6810053 | None:intergenic | 35.0% | |
| TGTGATCAGATCACTAGTAA+AGG | + | chr7.1:6810695-6810714 | None:intergenic | 35.0% | |
| TGTTTATCGTAACAACAGCT+CGG | - | chr7.1:6810864-6810883 | MS.gene007207:CDS | 35.0% | |
| ! | AACAATTCTAAGAGTTCCAC+AGG | + | chr7.1:6810394-6810413 | None:intergenic | 35.0% |
| ! | ACAATTCTAAGAGTTCCACA+GGG | + | chr7.1:6810393-6810412 | None:intergenic | 35.0% |
| ! | ATAACACAGTCAGTTGATGT+TGG | + | chr7.1:6810766-6810785 | None:intergenic | 35.0% |
| ! | GACACTGTTTCTCATAATTC+CGG | + | chr7.1:6811241-6811260 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr7.1:6811269-6811288 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr7.1:6811270-6811289 | None:intergenic | 35.0% |
| !! | CAGATGCTTTTGAGAACTTA+TGG | - | chr7.1:6811361-6811380 | MS.gene007207:intron | 35.0% |
| !! | CATAAGTTCTCAAAAGCATC+TGG | + | chr7.1:6811363-6811382 | None:intergenic | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr7.1:6811165-6811184 | MS.gene007207:intron | 40.0% | |
| AAGTCAAGACACTGCTTAGT+GGG | + | chr7.1:6811333-6811352 | None:intergenic | 40.0% | |
| AGAACTCTCTACTAGGCATT+TGG | + | chr7.1:6811022-6811041 | None:intergenic | 40.0% | |
| ATCACACTTCCAAGCCTTAA+AGG | - | chr7.1:6810709-6810728 | MS.gene007207:CDS | 40.0% | |
| CAAGCTAGATCTGACACTAA+TGG | - | chr7.1:6811137-6811156 | MS.gene007207:intron | 40.0% | |
| CACAAGAAAAGGCAGCAATT+TGG | + | chr7.1:6810741-6810760 | None:intergenic | 40.0% | |
| GAACTCTCTACTAGGCATTT+GGG | + | chr7.1:6811021-6811040 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr7.1:6811149-6811168 | MS.gene007207:intron | 40.0% | |
| GATGATTACTGCTGCATGTA+TGG | - | chr7.1:6810132-6810151 | MS.gene007207:CDS | 40.0% | |
| GCTGTTGTTACGATAAACAG+TGG | + | chr7.1:6810863-6810882 | None:intergenic | 40.0% | |
| GTTATCATGGGGCAAAAGAA+TGG | - | chr7.1:6810836-6810855 | MS.gene007207:CDS | 40.0% | |
| GTTCAAGTACTCGATATCGA+GGG | + | chr7.1:6810048-6810067 | None:intergenic | 40.0% | |
| GTTGGTTATTGCTAAACCAG+TGG | - | chr7.1:6810635-6810654 | MS.gene007207:CDS | 40.0% | |
| TCACACTTCCAAGCCTTAAA+GGG | - | chr7.1:6810710-6810729 | MS.gene007207:CDS | 40.0% | |
| TCGCAATAGAACTCTCTACT+AGG | + | chr7.1:6811029-6811048 | None:intergenic | 40.0% | |
| TCTGGGAAATACATAAGCCA+AGG | + | chr7.1:6810514-6810533 | None:intergenic | 40.0% | |
| TCTTGTCTCGTTTGGATGTT+GGG | - | chr7.1:6810413-6810432 | MS.gene007207:CDS | 40.0% | |
| TGATGTTGGAGCACAAGAAA+AGG | + | chr7.1:6810752-6810771 | None:intergenic | 40.0% | |
| TGCAACGCTTTCCATAGAAA+CGG | + | chr7.1:6811278-6811297 | None:intergenic | 40.0% | |
| TGTTTGCAAGAGATGGTGTT+CGG | - | chr7.1:6810456-6810475 | MS.gene007207:CDS | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr7.1:6811264-6811283 | MS.gene007207:intron | 40.0% | |
| TTCTTGTCTCGTTTGGATGT+TGG | - | chr7.1:6810412-6810431 | MS.gene007207:CDS | 40.0% | |
| ! | ATCCATCCAGCAAAGTCTTT+TGG | + | chr7.1:6811396-6811415 | None:intergenic | 40.0% |
| ! | CATTCTAGGTCTTATGTCAC+CGG | - | chr7.1:6811219-6811238 | MS.gene007207:intron | 40.0% |
| !! | TGGAATTTCCCTTTAAGGCT+TGG | + | chr7.1:6810721-6810740 | None:intergenic | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | + | chr7.1:6810564-6810583 | None:intergenic | 45.0% | |
| CAAGTCAAGACACTGCTTAG+TGG | + | chr7.1:6811334-6811353 | None:intergenic | 45.0% | |
| CACCAAAAGACTTTGCTGGA+TGG | - | chr7.1:6811391-6811410 | MS.gene007207:CDS | 45.0% | |
| CACTAAGCAGTGTCTTGACT+TGG | - | chr7.1:6811332-6811351 | MS.gene007207:intron | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.1:6810449-6810468 | MS.gene007207:CDS | 45.0% | |
| CTTGTCTCGTTTGGATGTTG+GGG | - | chr7.1:6810414-6810433 | MS.gene007207:CDS | 45.0% | |
| GAACCACCAAAAGACTTTGC+TGG | - | chr7.1:6811387-6811406 | MS.gene007207:CDS | 45.0% | |
| GGTTATTGCTAAACCAGTGG+CGG | - | chr7.1:6810638-6810657 | MS.gene007207:CDS | 45.0% | |
| GGTTCAAGTACTCGATATCG+AGG | + | chr7.1:6810049-6810068 | None:intergenic | 45.0% | |
| TAAGAGTTCCACAGGGAGAT+CGG | + | chr7.1:6810386-6810405 | None:intergenic | 45.0% | |
| ! | ACAATTTGGAGCTGCAAACG+TGG | - | chr7.1:6810359-6810378 | MS.gene007207:CDS | 45.0% |
| ! | CATCCAGCAAAGTCTTTTGG+TGG | + | chr7.1:6811393-6811412 | None:intergenic | 45.0% |
| !! | TTGAATTATAATTATAATTT+AGG | + | chr7.1:6810004-6810023 | None:intergenic | 5.0% |
| ACACGACATCCATCCAACTC+CGG | + | chr7.1:6810598-6810617 | None:intergenic | 50.0% | |
| ATCCAACTCCGGCAACTCAA+CGG | + | chr7.1:6810587-6810606 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr7.1:6810327-6810346 | MS.gene007207:CDS | 50.0% | |
| CAATTGGGTCAAACACCCCT+AGG | + | chr7.1:6810966-6810985 | None:intergenic | 50.0% | |
| CTCTCTACTAGGCATTTGGG+CGG | + | chr7.1:6811018-6811037 | None:intergenic | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr7.1:6810565-6810584 | None:intergenic | 50.0% | |
| GTCGACTACACGTACAGAAG+TGG | + | chr7.1:6810485-6810504 | None:intergenic | 50.0% | |
| GTGTAGTCGACCAATCACCT+TGG | - | chr7.1:6810494-6810513 | MS.gene007207:CDS | 50.0% | |
| TAAGCCACACAGGTTGCCTA+GGG | - | chr7.1:6810947-6810966 | MS.gene007207:CDS | 50.0% | |
| TTAAGCCACACAGGTTGCCT+AGG | - | chr7.1:6810946-6810965 | MS.gene007207:CDS | 50.0% | |
| ! | GACCTATTCCGTTGAGTTGC+CGG | - | chr7.1:6810576-6810595 | MS.gene007207:CDS | 50.0% |
| AAGCCACACAGGTTGCCTAG+GGG | - | chr7.1:6810948-6810967 | MS.gene007207:CDS | 55.0% | |
| CTCCGGCAACTCAACGGAAT+AGG | + | chr7.1:6810581-6810600 | None:intergenic | 55.0% | |
| TCTACTAGGCATTTGGGCGG+AGG | + | chr7.1:6811015-6811034 | None:intergenic | 55.0% | |
| ! | GTTGAGTTGCCGGAGTTGGA+TGG | - | chr7.1:6810586-6810605 | MS.gene007207:CDS | 55.0% |
| ! | TTCCGTTGAGTTGCCGGAGT+TGG | - | chr7.1:6810582-6810601 | MS.gene007207:CDS | 55.0% |
| AACGTGGTCCGATCTCCCTG+TGG | - | chr7.1:6810375-6810394 | MS.gene007207:CDS | 60.0% | |
| ACACCCCTAGGCAACCTGTG+TGG | + | chr7.1:6810954-6810973 | None:intergenic | 60.0% | |
| ! | TGTTTATGGGCTGCCGCCAC+TGG | + | chr7.1:6810654-6810673 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6809950 | 6811419 | 6809950 | ID=MS.gene007207 |
| chr7.1 | mRNA | 6809950 | 6811419 | 6809950 | ID=MS.gene007207.t1;Parent=MS.gene007207 |
| chr7.1 | exon | 6811385 | 6811419 | 6811385 | ID=MS.gene007207.t1.exon1;Parent=MS.gene007207.t1 |
| chr7.1 | CDS | 6811385 | 6811419 | 6811385 | ID=cds.MS.gene007207.t1;Parent=MS.gene007207.t1 |
| chr7.1 | exon | 6809950 | 6811051 | 6809950 | ID=MS.gene007207.t1.exon2;Parent=MS.gene007207.t1 |
| chr7.1 | CDS | 6809950 | 6811051 | 6809950 | ID=cds.MS.gene007207.t1;Parent=MS.gene007207.t1 |
| Gene Sequence |
| Protein sequence |
