Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007208.t1 | XP_004494192.1 | 68.3 | 366 | 111 | 2 | 5 | 370 | 14 | 374 | 3.70E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007208.t1 | Q9FVS1 | 41.7 | 355 | 193 | 6 | 18 | 368 | 3 | 347 | 1.8e-71 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007208.t1 | A0A1S2XV83 | 68.3 | 366 | 111 | 2 | 5 | 370 | 14 | 374 | 2.7e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95088 | MS.gene007208 | PPI |
| MS.gene98670 | MS.gene007208 | PPI |
| MS.gene75065 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene024343 | PPI |
| MS.gene007208 | MS.gene05311 | PPI |
| MS.gene007208 | MS.gene53925 | PPI |
| MS.gene064044 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene012753 | PPI |
| MS.gene75067 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene98673 | PPI |
| MS.gene007208 | MS.gene67877 | PPI |
| MS.gene071039 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene43440 | PPI |
| MS.gene007208 | MS.gene47120 | PPI |
| MS.gene42891 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene42887 | PPI |
| MS.gene52540 | MS.gene007208 | PPI |
| MS.gene03004 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene42893 | PPI |
| MS.gene024341 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene98671 | PPI |
| MS.gene59977 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene071037 | PPI |
| MS.gene007208 | MS.gene024275 | PPI |
| MS.gene33922 | MS.gene007208 | PPI |
| MS.gene007208 | MS.gene42889 | PPI |
| MS.gene007208 | MS.gene009311 | PPI |
| MS.gene007208 | MS.gene005636 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007208.t1 | MTR_7g104790 | 65.489 | 368 | 117 | 5 | 10 | 373 | 40 | 401 | 4.89e-172 | 485 |
| MS.gene007208.t1 | MTR_7g104790 | 65.489 | 368 | 117 | 5 | 10 | 373 | 16 | 377 | 1.09e-171 | 483 |
| MS.gene007208.t1 | MTR_1g059840 | 63.859 | 368 | 128 | 2 | 4 | 371 | 12 | 374 | 1.94e-169 | 478 |
| MS.gene007208.t1 | MTR_7g104785 | 60.548 | 365 | 127 | 5 | 10 | 370 | 17 | 368 | 2.45e-146 | 419 |
| MS.gene007208.t1 | MTR_7g104760 | 59.459 | 148 | 36 | 4 | 208 | 351 | 12 | 139 | 3.39e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007208.t1 | AT1G57790 | 41.408 | 355 | 194 | 7 | 18 | 368 | 3 | 347 | 2.99e-86 | 265 |
| MS.gene007208.t1 | AT3G56470 | 40.058 | 347 | 183 | 7 | 26 | 366 | 27 | 354 | 3.08e-72 | 229 |
| MS.gene007208.t1 | AT4G00893 | 37.644 | 348 | 202 | 8 | 27 | 368 | 44 | 382 | 9.22e-72 | 229 |
| MS.gene007208.t1 | AT4G12370 | 36.977 | 311 | 173 | 10 | 75 | 373 | 1 | 300 | 7.51e-57 | 188 |
| MS.gene007208.t1 | AT4G10660 | 35.333 | 300 | 178 | 6 | 56 | 348 | 3 | 293 | 2.89e-53 | 179 |
| MS.gene007208.t1 | AT1G49360 | 33.504 | 391 | 219 | 15 | 1 | 366 | 60 | 434 | 1.60e-49 | 173 |
| MS.gene007208.t1 | AT1G49360 | 33.504 | 391 | 219 | 15 | 1 | 366 | 83 | 457 | 1.89e-49 | 173 |
| MS.gene007208.t1 | AT1G49360 | 34.903 | 361 | 196 | 14 | 31 | 366 | 8 | 354 | 2.71e-49 | 170 |
| MS.gene007208.t1 | AT1G49360 | 34.903 | 361 | 196 | 14 | 31 | 366 | 8 | 354 | 2.71e-49 | 170 |
| MS.gene007208.t1 | AT1G49360 | 34.903 | 361 | 196 | 14 | 31 | 366 | 8 | 354 | 2.71e-49 | 170 |
| MS.gene007208.t1 | AT3G18720 | 34.412 | 340 | 192 | 13 | 4 | 326 | 26 | 351 | 1.76e-43 | 155 |
| MS.gene007208.t1 | AT4G10695 | 37.037 | 189 | 114 | 2 | 47 | 235 | 8 | 191 | 2.16e-37 | 135 |
| MS.gene007208.t1 | AT4G10695 | 37.037 | 189 | 114 | 2 | 47 | 235 | 8 | 191 | 2.16e-37 | 135 |
| MS.gene007208.t1 | AT4G12382 | 38.931 | 131 | 75 | 2 | 27 | 157 | 9 | 134 | 4.42e-24 | 96.7 |
| MS.gene007208.t1 | AT4G12382 | 38.931 | 131 | 75 | 2 | 27 | 157 | 9 | 134 | 4.42e-24 | 96.7 |
| MS.gene007208.t1 | AT4G10700 | 38.843 | 121 | 67 | 2 | 252 | 366 | 119 | 238 | 5.32e-20 | 88.6 |
| MS.gene007208.t1 | AT4G10700 | 37.634 | 93 | 53 | 2 | 56 | 148 | 3 | 90 | 4.39e-13 | 68.9 |
| MS.gene007208.t1 | AT2G44735 | 42.336 | 137 | 72 | 5 | 137 | 269 | 114 | 247 | 6.40e-19 | 87.4 |
| MS.gene007208.t1 | AT5G66830 | 25.444 | 338 | 192 | 16 | 28 | 324 | 20 | 338 | 7.86e-14 | 72.8 |
Find 77 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATATAACTTGAAAATAAT+TGG | 0.138028 | 7.1:+6817035 | None:intergenic |
| CTTTAATCCATTTACGTACT+AGG | 0.260500 | 7.1:-6817472 | MS.gene007208:CDS |
| TCATCTCCCTAGTACGTAAA+TGG | 0.285651 | 7.1:+6817465 | None:intergenic |
| ACACTCCAAGTATATTTAAC+AGG | 0.306200 | 7.1:+6817179 | None:intergenic |
| CTGGGAATCCGGGTGGAATA+AGG | 0.317861 | 7.1:+6817150 | None:intergenic |
| ATCCAGCCAGCAAAGTCTTT+TGG | 0.327295 | 7.1:+6816768 | None:intergenic |
| CCAGTCACGACACTGCAAAC+TGG | 0.365056 | 7.1:+6816830 | None:intergenic |
| AAGAAAACACTCTGGGAATC+CGG | 0.374097 | 7.1:+6817139 | None:intergenic |
| TTCCGCAGGGAGATCGGCCC+AGG | 0.375819 | 7.1:+6817784 | None:intergenic |
| ACTTTGGAAACTCAATGAAA+TGG | 0.377973 | 7.1:+6817582 | None:intergenic |
| CCAGTTTGCAGTGTCGTGAC+TGG | 0.379869 | 7.1:-6816830 | MS.gene007208:CDS |
| TTTCATTGAGTTTCCAAAGT+TGG | 0.386320 | 7.1:-6817579 | MS.gene007208:CDS |
| TTCACCCTGTTAAATATACT+TGG | 0.404539 | 7.1:-6817184 | MS.gene007208:CDS |
| TTCTCTAAAGTCCGTTTACA+TGG | 0.404588 | 7.1:-6816897 | MS.gene007208:CDS |
| GCAAACTGGGATAATATCTA+TGG | 0.411753 | 7.1:+6816844 | None:intergenic |
| GAACCACCAAAAGACTTTGC+TGG | 0.422988 | 7.1:-6816774 | MS.gene007208:CDS |
| AATCCTAGTCCATCTGTTCC+AGG | 0.423678 | 7.1:+6817262 | None:intergenic |
| TCTATTAACACATGTTCTCC+TGG | 0.424755 | 7.1:-6817332 | MS.gene007208:CDS |
| GTTCATTACACGTACAGAAC+TGG | 0.429904 | 7.1:+6817679 | None:intergenic |
| TTGTTCAAAATTGGTGGAAA+GGG | 0.436757 | 7.1:-6817118 | MS.gene007208:CDS |
| CTTTGGAAACTCAATGAAAT+GGG | 0.442916 | 7.1:+6817583 | None:intergenic |
| GTTCTCCTGGGGCAAACAAA+TGG | 0.445155 | 7.1:-6817319 | MS.gene007208:CDS |
| CTTGTTCAAAATTGGTGGAA+AGG | 0.447787 | 7.1:-6817119 | MS.gene007208:CDS |
| TGGTATGTCATGGCAAATCT+AGG | 0.450007 | 7.1:+6817434 | None:intergenic |
| AAAGAAGTGACAACGTTAGA+TGG | 0.458972 | 7.1:-6816996 | MS.gene007208:CDS |
| CTAAGCGACAAAGGGTTGCT+AGG | 0.460800 | 7.1:-6817212 | MS.gene007208:CDS |
| GATATAACTTGAAAATAATT+GGG | 0.461365 | 7.1:+6817036 | None:intergenic |
| ATGGTTGGTTATTGCTATAC+CGG | 0.464012 | 7.1:-6817529 | MS.gene007208:CDS |
| ATCAATTCTAAGAGTTCCGC+AGG | 0.465986 | 7.1:+6817770 | None:intergenic |
| TTTAATCCATTTACGTACTA+GGG | 0.471000 | 7.1:-6817471 | MS.gene007208:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.474123 | 7.1:+6817657 | None:intergenic |
| TGCAACGCTTTCCATGTAAA+CGG | 0.475584 | 7.1:+6816886 | None:intergenic |
| CACCAAAAGACTTTGCTGGC+TGG | 0.477340 | 7.1:-6816770 | MS.gene007208:CDS |
| ACAATCTGGAGTTGCAAACC+TGG | 0.478484 | 7.1:-6817802 | MS.gene007208:CDS |
| CATGTTAGCTATACAAAAGA+TGG | 0.479940 | 7.1:-6817548 | MS.gene007208:CDS |
| ACATGACATCCATCCAACTT+TGG | 0.481949 | 7.1:+6817566 | None:intergenic |
| GTGTCGTGACTGGGTAGAAC+TGG | 0.484698 | 7.1:-6816820 | MS.gene007208:CDS |
| GTTGTCCATTTGTTTGCCCC+AGG | 0.492308 | 7.1:+6817314 | None:intergenic |
| TACGTACTAGGGAGATGATC+AGG | 0.505980 | 7.1:-6817460 | MS.gene007208:CDS |
| ATAACACATTCAGTTGATGT+TGG | 0.507444 | 7.1:+6817389 | None:intergenic |
| TGAGGTGAAAACTGACAATC+TGG | 0.509451 | 7.1:-6817816 | MS.gene007208:CDS |
| TAAGCGACAAAGGGTTGCTA+GGG | 0.509850 | 7.1:-6817211 | MS.gene007208:CDS |
| CTATTAACACATGTTCTCCT+GGG | 0.510690 | 7.1:-6817331 | MS.gene007208:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.1:-6817712 | MS.gene007208:CDS |
| ATTGAGTTTCCAAAGTTGGA+TGG | 0.513372 | 7.1:-6817575 | MS.gene007208:CDS |
| TTTACTGTCTAAGCGACAAA+GGG | 0.514716 | 7.1:-6817220 | MS.gene007208:CDS |
| CAGTCACGACACTGCAAACT+GGG | 0.520084 | 7.1:+6816831 | None:intergenic |
| TTTCCTGGAACAGATGGACT+AGG | 0.522998 | 7.1:-6817265 | MS.gene007208:CDS |
| TACATTCTACGACCCTGTAC+AGG | 0.525822 | 7.1:-6817612 | MS.gene007208:CDS |
| TAAGAGTTCCGCAGGGAGAT+CGG | 0.526488 | 7.1:+6817778 | None:intergenic |
| AGAAAACACTCTGGGAATCC+GGG | 0.529020 | 7.1:+6817140 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 7.1:+6817403 | None:intergenic |
| CAGTTTGCAGTGTCGTGACT+GGG | 0.542506 | 7.1:-6816829 | MS.gene007208:CDS |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.1:+6817650 | None:intergenic |
| TTTGAACAAGAAAACACTCT+GGG | 0.570873 | 7.1:+6817132 | None:intergenic |
| TTAGCTATACAAAAGATGGT+TGG | 0.586579 | 7.1:-6817544 | MS.gene007208:CDS |
| CAAGTTATATCTGACAACAA+TGG | 0.591633 | 7.1:-6817024 | MS.gene007208:CDS |
| GGCAGCAATGTGGTATGTCA+TGG | 0.594517 | 7.1:+6817424 | None:intergenic |
| TTATTATTCAGGGTAAGTGA+CGG | 0.601111 | 7.1:-6817866 | MS.gene007208:intron |
| CAATCTGGAGTTGCAAACCT+GGG | 0.603358 | 7.1:-6817801 | MS.gene007208:CDS |
| GTTCTGAACCTTATTCCACC+CGG | 0.608100 | 7.1:-6817158 | MS.gene007208:CDS |
| CATTCTAAGACTTACGTCAG+TGG | 0.613938 | 7.1:-6816942 | MS.gene007208:CDS |
| ATACATTGGTTTGAATGTCG+AGG | 0.622686 | 7.1:-6818093 | None:intergenic |
| TATATCTGACAACAATGGAG+TGG | 0.623598 | 7.1:-6817019 | MS.gene007208:CDS |
| CACTCCAAGTATATTTAACA+GGG | 0.623964 | 7.1:+6817180 | None:intergenic |
| AGTGACGGAATCAATGACAA+TGG | 0.627376 | 7.1:-6817851 | MS.gene007208:CDS |
| CAATGGAAGAGTGGCTGCTG+AGG | 0.630397 | 7.1:-6817834 | MS.gene007208:CDS |
| AATCAATGACAATGGAAGAG+TGG | 0.649228 | 7.1:-6817843 | MS.gene007208:CDS |
| GTGTTAATAGATACAACTGT+AGG | 0.657076 | 7.1:+6817344 | None:intergenic |
| AAATTTATGATAGAGCATGA+AGG | 0.660813 | 7.1:-6817095 | MS.gene007208:CDS |
| TATTAACACATGTTCTCCTG+GGG | 0.662817 | 7.1:-6817330 | MS.gene007208:CDS |
| AACCTGGGCCGATCTCCCTG+CGG | 0.663179 | 7.1:-6817786 | MS.gene007208:CDS |
| GTGTAATGAACCAATCACCT+TGG | 0.677032 | 7.1:-6817667 | MS.gene007208:CDS |
| AAGCGACAAAGGGTTGCTAG+GGG | 0.693095 | 7.1:-6817210 | MS.gene007208:CDS |
| AAACACTCTGGGAATCCGGG+TGG | 0.714669 | 7.1:+6817143 | None:intergenic |
| CACAAGAGAAGGCAGCAATG+TGG | 0.724573 | 7.1:+6817414 | None:intergenic |
| TCAATTCTAAGAGTTCCGCA+GGG | 0.736703 | 7.1:+6817771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTTATTTTATTATTCA+GGG | - | chr7.1:6816967-6816986 | MS.gene007208:CDS | 10.0% |
| !!! | TAATACTTATTTTATTATTC+AGG | - | chr7.1:6816966-6816985 | MS.gene007208:CDS | 10.0% |
| !! | AGATATAACTTGAAAATAAT+TGG | + | chr7.1:6817811-6817830 | None:intergenic | 15.0% |
| !! | GATATAACTTGAAAATAATT+GGG | + | chr7.1:6817810-6817829 | None:intergenic | 15.0% |
| !! | TGGATTAAAGAAAAAAAAAA+GGG | + | chr7.1:6817361-6817380 | None:intergenic | 15.0% |
| !!! | ATGGATTAAAGAAAAAAAAA+AGG | + | chr7.1:6817362-6817381 | None:intergenic | 15.0% |
| !! | GGATTAAAGAAAAAAAAAAG+GGG | + | chr7.1:6817360-6817379 | None:intergenic | 20.0% |
| !! | TGTTAGAACACAAAAAAAAA+AGG | + | chr7.1:6816795-6816814 | None:intergenic | 20.0% |
| ! | AAATTTATGATAGAGCATGA+AGG | - | chr7.1:6817748-6817767 | MS.gene007208:CDS | 25.0% |
| ! | TTTAATCCATTTACGTACTA+GGG | - | chr7.1:6817372-6817391 | MS.gene007208:CDS | 25.0% |
| !! | AAAAAAAAAGGGGTGATTTT+CGG | + | chr7.1:6817350-6817369 | None:intergenic | 25.0% |
| !! | AGTGTTTTCTTGTTCAAAAT+TGG | - | chr7.1:6817716-6817735 | MS.gene007208:CDS | 25.0% |
| ACACTCCAAGTATATTTAAC+AGG | + | chr7.1:6817667-6817686 | None:intergenic | 30.0% | |
| CAAGTTATATCTGACAACAA+TGG | - | chr7.1:6817819-6817838 | MS.gene007208:CDS | 30.0% | |
| CACTCCAAGTATATTTAACA+GGG | + | chr7.1:6817666-6817685 | None:intergenic | 30.0% | |
| CATGTTAGCTATACAAAAGA+TGG | - | chr7.1:6817295-6817314 | MS.gene007208:CDS | 30.0% | |
| CTTATGTATTTCCCAAAAAG+CGG | - | chr7.1:6817199-6817218 | MS.gene007208:CDS | 30.0% | |
| CTTTAATCCATTTACGTACT+AGG | - | chr7.1:6817371-6817390 | MS.gene007208:CDS | 30.0% | |
| GTGTTAATAGATACAACTGT+AGG | + | chr7.1:6817502-6817521 | None:intergenic | 30.0% | |
| GTTCTAACATTCTTCAATTC+AGG | - | chr7.1:6816806-6816825 | MS.gene007208:CDS | 30.0% | |
| TTAGCTATACAAAAGATGGT+TGG | - | chr7.1:6817299-6817318 | MS.gene007208:CDS | 30.0% | |
| TTATTATTCAGGGTAAGTGA+CGG | - | chr7.1:6816977-6816996 | MS.gene007208:CDS | 30.0% | |
| TTCACCCTGTTAAATATACT+TGG | - | chr7.1:6817659-6817678 | MS.gene007208:CDS | 30.0% | |
| TTGTTCAAAATTGGTGGAAA+GGG | - | chr7.1:6817725-6817744 | MS.gene007208:CDS | 30.0% | |
| TTTCATTGAGTTTCCAAAGT+TGG | - | chr7.1:6817264-6817283 | MS.gene007208:CDS | 30.0% | |
| TTTGAACAAGAAAACACTCT+GGG | + | chr7.1:6817714-6817733 | None:intergenic | 30.0% | |
| ! | ACTAGGATTGTCTTTTCTAA+TGG | - | chr7.1:6817595-6817614 | MS.gene007208:CDS | 30.0% |
| ! | ACTTTGGAAACTCAATGAAA+TGG | + | chr7.1:6817264-6817283 | None:intergenic | 30.0% |
| ! | ATAACACATTCAGTTGATGT+TGG | + | chr7.1:6817457-6817476 | None:intergenic | 30.0% |
| ! | CTAGGATTGTCTTTTCTAAT+GGG | - | chr7.1:6817596-6817615 | MS.gene007208:CDS | 30.0% |
| ! | CTCTTAGAATTGATCTTTTC+TGG | - | chr7.1:6817082-6817101 | MS.gene007208:CDS | 30.0% |
| ! | CTTTGGAAACTCAATGAAAT+GGG | + | chr7.1:6817263-6817282 | None:intergenic | 30.0% |
| ! | GTTTTCTTGTTCAAAATTGG+TGG | - | chr7.1:6817719-6817738 | MS.gene007208:CDS | 30.0% |
| ! | TTTTGAACAAGAAAACACTC+TGG | + | chr7.1:6817715-6817734 | None:intergenic | 30.0% |
| !!! | AAAACTGCTCATTTTTTTCC+TGG | - | chr7.1:6817563-6817582 | MS.gene007208:CDS | 30.0% |
| AAAGAAGTGACAACGTTAGA+TGG | - | chr7.1:6817847-6817866 | MS.gene007208:CDS | 35.0% | |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.1:6817189-6817208 | None:intergenic | 35.0% | |
| AATCAATGACAATGGAAGAG+TGG | - | chr7.1:6817000-6817019 | MS.gene007208:CDS | 35.0% | |
| ATTGAGTTTCCAAAGTTGGA+TGG | - | chr7.1:6817268-6817287 | MS.gene007208:CDS | 35.0% | |
| CTATTAACACATGTTCTCCT+GGG | - | chr7.1:6817512-6817531 | MS.gene007208:CDS | 35.0% | |
| CTTGTTCAAAATTGGTGGAA+AGG | - | chr7.1:6817724-6817743 | MS.gene007208:CDS | 35.0% | |
| GCAAACTGGGATAATATCTA+TGG | + | chr7.1:6818002-6818021 | None:intergenic | 35.0% | |
| TATATCTGACAACAATGGAG+TGG | - | chr7.1:6817824-6817843 | MS.gene007208:CDS | 35.0% | |
| TATTAACACATGTTCTCCTG+GGG | - | chr7.1:6817513-6817532 | MS.gene007208:CDS | 35.0% | |
| TCTATTAACACATGTTCTCC+TGG | - | chr7.1:6817511-6817530 | MS.gene007208:CDS | 35.0% | |
| TTTACTGTCTAAGCGACAAA+GGG | - | chr7.1:6817623-6817642 | MS.gene007208:CDS | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr7.1:6817196-6817215 | None:intergenic | 35.0% | |
| ! | ATGGTTGGTTATTGCTATAC+CGG | - | chr7.1:6817314-6817333 | MS.gene007208:CDS | 35.0% |
| ! | TTTTACTGTCTAAGCGACAA+AGG | - | chr7.1:6817622-6817641 | MS.gene007208:CDS | 35.0% |
| !! | GGATACTTTTGAGAACATGT+GGG | - | chr7.1:6818044-6818063 | MS.gene007208:intron | 35.0% |
| !! | TGGATACTTTTGAGAACATG+TGG | - | chr7.1:6818043-6818062 | MS.gene007208:intron | 35.0% |
| !! | TTCTCTAAAGTCCGTTTACA+TGG | - | chr7.1:6817946-6817965 | MS.gene007208:intron | 35.0% |
| !!! | CATTTTTTTCCTGGAACAGA+TGG | - | chr7.1:6817572-6817591 | MS.gene007208:CDS | 35.0% |
| ACATGACATCCATCCAACTT+TGG | + | chr7.1:6817280-6817299 | None:intergenic | 40.0% | |
| GCAACTTGCAAGACTGAATT+GGG | + | chr7.1:6816924-6816943 | None:intergenic | 40.0% | |
| GTGTAATGAACCAATCACCT+TGG | - | chr7.1:6817176-6817195 | MS.gene007208:CDS | 40.0% | |
| GTTCATTACACGTACAGAAC+TGG | + | chr7.1:6817167-6817186 | None:intergenic | 40.0% | |
| TCATCTCCCTAGTACGTAAA+TGG | + | chr7.1:6817381-6817400 | None:intergenic | 40.0% | |
| TGAGGTGAAAACTGACAATC+TGG | - | chr7.1:6817027-6817046 | MS.gene007208:CDS | 40.0% | |
| TGCAACGCTTTCCATGTAAA+CGG | + | chr7.1:6817960-6817979 | None:intergenic | 40.0% | |
| TGCAACTTGCAAGACTGAAT+TGG | + | chr7.1:6816925-6816944 | None:intergenic | 40.0% | |
| TGGTATGTCATGGCAAATCT+AGG | + | chr7.1:6817412-6817431 | None:intergenic | 40.0% | |
| ! | AAATGGGTCTTTTCCTGTAC+AGG | + | chr7.1:6817247-6817266 | None:intergenic | 40.0% |
| ! | AAGAAAACACTCTGGGAATC+CGG | + | chr7.1:6817707-6817726 | None:intergenic | 40.0% |
| ! | AATGGGTCTTTTCCTGTACA+GGG | + | chr7.1:6817246-6817265 | None:intergenic | 40.0% |
| ! | AGTGACGGAATCAATGACAA+TGG | - | chr7.1:6816992-6817011 | MS.gene007208:CDS | 40.0% |
| ! | ATCAATTCTAAGAGTTCCGC+AGG | + | chr7.1:6817076-6817095 | None:intergenic | 40.0% |
| ! | TCAATTCTAAGAGTTCCGCA+GGG | + | chr7.1:6817075-6817094 | None:intergenic | 40.0% |
| !! | CATTCTAAGACTTACGTCAG+TGG | - | chr7.1:6817901-6817920 | MS.gene007208:intron | 40.0% |
| !!! | TATAGCAGCTACCGCTTTTT+GGG | + | chr7.1:6817213-6817232 | None:intergenic | 40.0% |
| AATCCTAGTCCATCTGTTCC+AGG | + | chr7.1:6817584-6817603 | None:intergenic | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.1:6817131-6817150 | MS.gene007208:CDS | 45.0% | |
| GAACCACCAAAAGACTTTGC+TGG | - | chr7.1:6818069-6818088 | MS.gene007208:intron | 45.0% | |
| TAAGCGACAAAGGGTTGCTA+GGG | - | chr7.1:6817632-6817651 | MS.gene007208:CDS | 45.0% | |
| TACATTCTACGACCCTGTAC+AGG | - | chr7.1:6817231-6817250 | MS.gene007208:CDS | 45.0% | |
| TACGTACTAGGGAGATGATC+AGG | - | chr7.1:6817383-6817402 | MS.gene007208:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr7.1:6817443-6817462 | None:intergenic | 45.0% | |
| ! | ACAATCTGGAGTTGCAAACC+TGG | - | chr7.1:6817041-6817060 | MS.gene007208:CDS | 45.0% |
| ! | AGAAAACACTCTGGGAATCC+GGG | + | chr7.1:6817706-6817725 | None:intergenic | 45.0% |
| ! | ATCCAGCCAGCAAAGTCTTT+TGG | + | chr7.1:6818078-6818097 | None:intergenic | 45.0% |
| ! | CAATCTGGAGTTGCAAACCT+GGG | - | chr7.1:6817042-6817061 | MS.gene007208:CDS | 45.0% |
| ! | GTTCTGAACCTTATTCCACC+CGG | - | chr7.1:6817685-6817704 | MS.gene007208:CDS | 45.0% |
| ! | TTTCCTGGAACAGATGGACT+AGG | - | chr7.1:6817578-6817597 | MS.gene007208:CDS | 45.0% |
| !! | GTATAGCAGCTACCGCTTTT+TGG | + | chr7.1:6817214-6817233 | None:intergenic | 45.0% |
| !!! | CTTTTCTGGTTTGATCGCAG+CGG | - | chr7.1:6817096-6817115 | MS.gene007208:CDS | 45.0% |
| AAGCGACAAAGGGTTGCTAG+GGG | - | chr7.1:6817633-6817652 | MS.gene007208:CDS | 50.0% | |
| CACAAGAGAAGGCAGCAATG+TGG | + | chr7.1:6817432-6817451 | None:intergenic | 50.0% | |
| CACCAAAAGACTTTGCTGGC+TGG | - | chr7.1:6818073-6818092 | MS.gene007208:intron | 50.0% | |
| CAGTCACGACACTGCAAACT+GGG | + | chr7.1:6818015-6818034 | None:intergenic | 50.0% | |
| CAGTTTGCAGTGTCGTGACT+GGG | - | chr7.1:6818014-6818033 | MS.gene007208:intron | 50.0% | |
| CTAAGCGACAAAGGGTTGCT+AGG | - | chr7.1:6817631-6817650 | MS.gene007208:CDS | 50.0% | |
| GGCAGCAATGTGGTATGTCA+TGG | + | chr7.1:6817422-6817441 | None:intergenic | 50.0% | |
| GTTCTCCTGGGGCAAACAAA+TGG | - | chr7.1:6817524-6817543 | MS.gene007208:CDS | 50.0% | |
| GTTGTCCATTTGTTTGCCCC+AGG | + | chr7.1:6817532-6817551 | None:intergenic | 50.0% | |
| TAAGAGTTCCGCAGGGAGAT+CGG | + | chr7.1:6817068-6817087 | None:intergenic | 50.0% | |
| ! | CAGCCAGCAAAGTCTTTTGG+TGG | + | chr7.1:6818075-6818094 | None:intergenic | 50.0% |
| ! | GATTTTCGGCACACTCTGAC+CGG | + | chr7.1:6817336-6817355 | None:intergenic | 50.0% |
| CAATGGAAGAGTGGCTGCTG+AGG | - | chr7.1:6817009-6817028 | MS.gene007208:CDS | 55.0% | |
| CCAGTCACGACACTGCAAAC+TGG | + | chr7.1:6818016-6818035 | None:intergenic | 55.0% | |
| CCAGTTTGCAGTGTCGTGAC+TGG | - | chr7.1:6818013-6818032 | MS.gene007208:intron | 55.0% | |
| CTGGGAATCCGGGTGGAATA+AGG | + | chr7.1:6817696-6817715 | None:intergenic | 55.0% | |
| GTGTCGTGACTGGGTAGAAC+TGG | - | chr7.1:6818023-6818042 | MS.gene007208:intron | 55.0% | |
| ! | AAACACTCTGGGAATCCGGG+TGG | + | chr7.1:6817703-6817722 | None:intergenic | 55.0% |
| AACCTGGGCCGATCTCCCTG+CGG | - | chr7.1:6817057-6817076 | MS.gene007208:CDS | 65.0% | |
| TTCCGCAGGGAGATCGGCCC+AGG | + | chr7.1:6817062-6817081 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6816764 | 6818101 | 6816764 | ID=MS.gene007208 |
| chr7.1 | mRNA | 6816764 | 6818101 | 6816764 | ID=MS.gene007208.t1;Parent=MS.gene007208 |
| chr7.1 | exon | 6818094 | 6818101 | 6818094 | ID=MS.gene007208.t1.exon1;Parent=MS.gene007208.t1 |
| chr7.1 | CDS | 6818094 | 6818101 | 6818094 | ID=cds.MS.gene007208.t1;Parent=MS.gene007208.t1 |
| chr7.1 | exon | 6816764 | 6817877 | 6816764 | ID=MS.gene007208.t1.exon2;Parent=MS.gene007208.t1 |
| chr7.1 | CDS | 6816764 | 6817877 | 6816764 | ID=cds.MS.gene007208.t1;Parent=MS.gene007208.t1 |
| Gene Sequence |
| Protein sequence |
