AlfalfaGEDB | MS.gene013207

M. sativa cultivar XinJiangDaYe / MS.gene013207

KEGG: K00079
GO: -
PFAM: PF00106.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013207.t1	XP_003602735.1	99.7	311	1	0	1	311	1	311	8.80E-177	629.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013207.t1	Q9M2E2	41.8	297	139	7	37	310	9	294	1.3e-51	204.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013207.t1	G7J2S1	99.7	311	1	0	1	311	1	311	6.4e-177	629.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene013207	MS.gene57560	PPI
MS.gene013207	MS.gene57559	PPI
MS.gene013207	MS.gene019530	PPI
MS.gene013207	MS.gene038616	PPI
MS.gene013207	MS.gene57563	PPI
MS.gene013207	MS.gene70985	PPI
MS.gene013207	MS.gene019531	PPI
MS.gene013207	MS.gene57564	PPI
MS.gene013207	MS.gene019537	PPI
MS.gene013207	MS.gene58344	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013207.t1	MTR_3g098470	99.678	311	1	0	1	311	1	311	0.0	642
MS.gene013207.t1	MTR_8g096060	80.511	313	56	2	1	311	1	310	0.0	521
MS.gene013207.t1	MTR_1g031180	77.926	299	66	0	13	311	18	316	2.53e-180	500
MS.gene013207.t1	MTR_4g087460	41.695	295	154	8	29	311	16	304	3.61e-73	228
MS.gene013207.t1	MTR_8g032010	41.077	297	138	5	33	303	5	290	2.69e-69	218
MS.gene013207.t1	MTR_8g032000	41.017	295	137	5	37	305	9	292	8.94e-69	216
MS.gene013207.t1	MTR_8g031960	40.667	300	140	6	36	309	9	296	1.31e-67	213
MS.gene013207.t1	MTR_7g076660	41.522	289	144	6	37	311	9	286	1.33e-67	213
MS.gene013207.t1	MTR_7g076660	41.522	289	144	6	37	311	10	287	1.61e-67	213
MS.gene013207.t1	MTR_8g031980	39.604	303	145	6	34	310	6	296	2.97e-67	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013207.t1	AT5G51030	69.968	313	92	1	1	311	2	314	4.85e-173	482
MS.gene013207.t1	AT5G61830	67.089	316	99	3	1	311	1	316	8.45e-158	443
MS.gene013207.t1	AT5G61830	67.089	316	99	3	1	311	1	316	8.45e-158	443
MS.gene013207.t1	AT3G59710	42.756	283	151	5	23	303	7	280	2.60e-77	238
MS.gene013207.t1	AT3G59710	41.554	296	161	6	11	303	23	309	4.75e-76	236
MS.gene013207.t1	AT3G59710	42.199	282	152	5	24	303	18	290	1.14e-74	231
MS.gene013207.t1	AT3G61220	41.414	297	140	6	37	310	9	294	9.61e-67	211
MS.gene013207.t1	AT3G61220	41.414	297	140	6	37	310	16	301	1.41e-66	211
MS.gene013207.t1	AT3G61220	41.414	297	140	6	37	310	40	325	3.11e-66	211
MS.gene013207.t1	AT2G24190	40.741	297	142	6	37	310	9	294	1.94e-65	207

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Find 72 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCAAAACCAATTCCT+CGG	0.493628	3.2:-81703116	None:intergenic
AACAAGTAGAAGATGGAAGT+TGG	0.488568	3.2:+81704352	MS.gene013207:CDS
AACCACGGCAATAGTTTCCT+TGG	0.438839	3.2:-81703082	None:intergenic
AACCTCTGGTGATCAGAATA+AGG	0.350644	3.2:-81702748	None:intergenic
AAGCTCTCTGATAGGCCAGA+GGG	0.648245	3.2:+81704459	MS.gene013207:CDS
AAGGGGCTGATACTGGAGTT+TGG	0.401013	3.2:+81704565	MS.gene013207:CDS
AAGTGTTACAGTTGAACAAG+GGG	0.633975	3.2:+81704548	MS.gene013207:CDS
AATAAGGAATGGTTCTCAAA+AGG	0.409576	3.2:-81702732	None:intergenic
AATAGAAAATGAGGAGTTGA+GGG	0.424375	3.2:+81704263	MS.gene013207:CDS
AATCTCTTGATCAGGAACAA+GGG	0.687916	3.2:-81704592	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTCAAAACCAATTCCT+CGG	-	chr3.2:81703119-81703138	None:intergenic	30.0%
AATAAGGAATGGTTCTCAAA+AGG	-	chr3.2:81702735-81702754	None:intergenic	30.0%
AATAGAAAATGAGGAGTTGA+GGG	+	chr3.2:81704263-81704282	MS.gene013207:CDS	30.0%
ATAAGGAATGGTTCTCAAAA+GGG	-	chr3.2:81702734-81702753	None:intergenic	30.0%
GAATAGTCAGTAAATGTTTG+AGG	-	chr3.2:81704393-81704412	None:intergenic	30.0%
GATATATTTCCCAATTAGCA+AGG	+	chr3.2:81704129-81704148	MS.gene013207:intron	30.0%
GGACTGGATTGAAATATATA+TGG	-	chr3.2:81702935-81702954	None:intergenic	30.0%
GTTACAGAGAATAGAAAATG+AGG	+	chr3.2:81704254-81704273	MS.gene013207:intron	30.0%
GTTACCTTTCTATATAAAGG+TGG	+	chr3.2:81703055-81703074	MS.gene013207:intron	30.0%
TACATTAATTGTTACTGTCC+TGG	+	chr3.2:81704492-81704511	MS.gene013207:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	81702682	81704656	81702682	ID=MS.gene013207
chr3.2	mRNA	81702682	81704656	81702682	ID=MS.gene013207.t1;Parent=MS.gene013207
chr3.2	exon	81702682	81702767	81702682	ID=MS.gene013207.t1.exon1;Parent=MS.gene013207.t1
chr3.2	CDS	81702682	81702767	81702682	ID=cds.MS.gene013207.t1;Parent=MS.gene013207.t1
chr3.2	exon	81703074	81703332	81703074	ID=MS.gene013207.t1.exon2;Parent=MS.gene013207.t1
chr3.2	CDS	81703074	81703332	81703074	ID=cds.MS.gene013207.t1;Parent=MS.gene013207.t1
chr3.2	exon	81703456	81703650	81703456	ID=MS.gene013207.t1.exon3;Parent=MS.gene013207.t1
chr3.2	CDS	81703456	81703650	81703456	ID=cds.MS.gene013207.t1;Parent=MS.gene013207.t1
chr3.2	exon	81704261	81704656	81704261	ID=MS.gene013207.t1.exon4;Parent=MS.gene013207.t1
chr3.2	CDS	81704261	81704656	81704261	ID=cds.MS.gene013207.t1;Parent=MS.gene013207.t1

Gene Sequence

>MS.gene013207

ATGGGTCACAAAGAAAAATCACGAAAAGATAAGAGATTGCAAGAGATATCCCTTTTGAGAACCATTCCTTATTCTGATCACCAGAGGTTAATTTGATCTTATAGATATATACCTATAATTCTTTTATTGTTCAATAATATTAACTTTTAGTTAGTTTTTCCTTCTGATTATCATATGAACATATGATTGTTAAATTCGATGCATTCACCCAATCAACATGTTGGTGGTCGTCGGATCAAGATTGAATAACCCATATATATTTCAATCCAGTCCGCCTGATCTCAATCCAATGACCACCAATGTACGGATTGTGTGAATGTGTGGATCGTTGATTGCAACAAATTAAAATCCGTTAAAATCATGATTTTAATATGTTACCTTTCTATATAAAGGTGGTGGTCCAAGGAAACTATTGCCGTGGTTACTGGTGGAAACCGAGGAATTGGTTTTGAGATTTCAAGACAACTTGCCGATCATGGAGTTACTGTTGTGTTGACATCAAGAGATGCTAGTGTCGGTGTTGAATCAATCAAGGTCTTGCAAGAAGGTGGTTTGGACGTCCATTGTCATCAACTTGATATATTAGATTCTTCATCTGTCAATGAATTTGCTGAGTGGTTGAAAGAAGAATATGGTGGTCTAGATATTCTGGTAAGTTTCTAAAATGTAATTAGCCAAAAAATGTGAAATTCGACTTAATTTTGTTTATAGGTGTTAGCGTTGTTAATTTTATAATTATCAATTGTTTCTTGGCTATAATTTTGTTATTTATAGGTAAATAATGCTGGTGTTAATTCCAACATGGGATCTGATAACTCAGTTGAAAATGCTCGTAAGTGTATTGAAACAAATTATTATGGGACCAAGAGAATGATTGAAGCTATGATTCCTTTGATGAAGCCATCTGCTGCTGGTGGTCGTATTGTTAATGTGAGTTCACGTTTGGGTCGTCTAAATGGCAAACGAAATGTAAGCAAACAATCTAATTGTTTCATTGAGTAATTTCTATTCTTGTAACTTGCAATACACTTTTTGCTCTCAAAATTGTATGCATAATTGCATATAGTATGATTTTTGCAAATTTATAAATATAAATTTATATAAAATTAGAATAGTATCTCCATTAACCTTTTAGCGTTGGAGACTATGATATGACGCCTTAACCATATTAATAGCACCACACCGTAGATTAATCTGCCTATGAAATTTAGGTATCTCATGGACTAATTGGTTAGTAATTAGTCCATGAACAATTGCAACTAGTGACAAATTTGTTTTTAACATAACCTAAGTTTCTTAGTCAAATTAATTCCTAATGAGCTTATATTGATGTAGGATTAACGTGTAATGTGACATGTTCAATTAATATGCCACATGCCCATATCATAGTATTTAACAATGGAAAGTAACGGAGGAATCATTTTGAATGACATTTTATAGTTTTAGGGATATATTTCCCAATTAGCAAGGGACTATTTGACCAAACATACAATTTCAATGATGAATTTGTCTGTATACTCTTGATTCTCAAATTATGCGAAATGCAAAACTGATTAACTGTAACTTGATTGTGTTACAGAGAATAGAAAATGAGGAGTTGAGGGAGAAACTGAGTGATGTGGAATCTCTTTCAGAGGAACTAATTGATGAAACTATAAATAATTTTCTACAACAAGTAGAAGATGGAAGTTGGAAAACAGGAGGGTGGCCTCAAACATTTACTGACTATTCAGTATCAAAGCTTGCAGTTAATACTTACACAAGGTATATGGCAAAGAAGCTCTCTGATAGGCCAGAGGGTGAAAAGATTTACATTAATTGTTACTGTCCTGGTTGGGTGAAAACTGCTCTAACAGGTTATGCAGGAAGTGTTACAGTTGAACAAGGGGCTGATACTGGAGTTTGGATTGCCCTTGTTCCTGATCAAGAGATTACAGGGAAGTTTTTTGCTGAAAGAAGAGAGATTAACTTTTAA

Protein sequence

>MS.gene013207.t1

MGHKEKSRKDKRLQEISLLRTIPYSDHQRWWSKETIAVVTGGNRGIGFEISRQLADHGVTVVLTSRDASVGVESIKVLQEGGLDVHCHQLDILDSSSVNEFAEWLKEEYGGLDILVNNAGVNSNMGSDNSVENARKCIETNYYGTKRMIEAMIPLMKPSAAGGRIVNVSSRLGRLNGKRNRIENEELREKLSDVESLSEELIDETINNFLQQVEDGSWKTGGWPQTFTDYSVSKLAVNTYTRYMAKKLSDRPEGEKIYINCYCPGWVKTALTGYAGSVTVEQGADTGVWIALVPDQEITGKFFAERREINF