AlfalfaGEDB | MS.gene58343

M. sativa cultivar XinJiangDaYe / MS.gene58343

KEGG: K15095
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF00106.28 PF13561.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58343.t1	XP_003627601.2	91.9	298	24	0	1	298	1	298	2.00E-149	538.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58343.t1	Q9M2E2	59.1	301	115	5	1	298	1	296	6.5e-93	342.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58343.t1	G7LBT9	91.9	298	24	0	1	298	1	298	1.4e-149	538.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene58343	0.813758	2.18E-51	-1.69E-46
MS.gene050623	MS.gene58343	-0.805952	1.04E-49	-1.69E-46
MS.gene051983	MS.gene58343	0.826601	2.48E-54	-1.69E-46
MS.gene052176	MS.gene58343	0.819755	9.83E-53	-1.69E-46
MS.gene053928	MS.gene58343	0.811516	6.73E-51	-1.69E-46
MS.gene054930	MS.gene58343	0.80291	4.48E-49	-1.69E-46
MS.gene056979	MS.gene58343	0.82419	9.23E-54	-1.69E-46
MS.gene058142	MS.gene58343	0.823554	1.30E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000412	MS.gene58343	PPI
MS.gene008719	MS.gene58343	PPI
MS.gene009163	MS.gene58343	PPI
MS.gene013207	MS.gene58343	PPI
MS.gene019527	MS.gene58343	PPI
MS.gene019530	MS.gene58343	PPI
MS.gene019531	MS.gene58343	PPI
MS.gene019532	MS.gene58343	PPI
MS.gene019535	MS.gene58343	PPI
MS.gene019536	MS.gene58343	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58343.t1	MTR_8g032000	91.946	298	24	0	1	298	1	298	0.0	566
MS.gene58343.t1	MTR_8g031990	85.906	298	42	0	1	298	1	298	0.0	533
MS.gene58343.t1	MTR_8g032020	85.570	298	42	1	2	298	3	300	0.0	523
MS.gene58343.t1	MTR_8g032010	83.221	298	50	0	1	298	1	298	0.0	520
MS.gene58343.t1	MTR_8g031980	70.805	298	87	0	1	298	1	298	2.91e-158	443
MS.gene58343.t1	MTR_8g031960	72.014	293	81	1	7	298	8	300	3.46e-155	435
MS.gene58343.t1	MTR_8g031940	66.890	299	98	1	1	298	1	299	4.98e-147	415
MS.gene58343.t1	MTR_7g076655	58.725	298	111	2	1	298	1	286	1.57e-124	357
MS.gene58343.t1	MTR_7g076660	58.725	298	111	2	1	298	1	286	1.03e-123	355
MS.gene58343.t1	MTR_7g076660	58.904	292	108	2	7	298	8	287	6.66e-122	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58343.t1	AT3G61220	59.136	301	115	5	1	298	1	296	1.83e-124	357
MS.gene58343.t1	AT3G61220	59.322	295	112	5	7	298	14	303	3.26e-122	352
MS.gene58343.t1	AT3G61220	59.322	295	112	5	7	298	38	327	1.28e-121	351
MS.gene58343.t1	AT2G24190	56.146	301	124	5	1	298	1	296	2.00e-118	342
MS.gene58343.t1	AT1G01800	56.000	300	125	5	1	298	1	295	3.60e-118	342
MS.gene58343.t1	AT2G24190	56.610	295	120	5	7	298	12	301	8.16e-117	338
MS.gene58343.t1	AT1G01800	53.110	209	95	2	90	298	55	260	4.61e-79	241
MS.gene58343.t1	AT5G51030	37.209	301	152	5	9	298	40	314	1.52e-62	200
MS.gene58343.t1	AT5G61830	37.748	302	152	5	9	298	39	316	2.64e-53	177
MS.gene58343.t1	AT5G61830	37.748	302	152	5	9	298	39	316	2.64e-53	177

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Find 57 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAGCTGCAAATCCAGTT+AGG	0.483475	8.2:+66145978	MS.gene58343:CDS
AATATCAAGTTTGCCAAATT+GGG	0.350754	8.2:-66142863	None:intergenic
ACACAGTTGATGCAGAAGGT+AGG	0.629564	8.2:-66145896	None:intergenic
ACAGCAAGAGATGAGAAAAG+AGG	0.563297	8.2:+66142727	MS.gene58343:CDS
ACAGGATCAAACAAAGGAAT+TGG	0.337640	8.2:+66142655	MS.gene58343:CDS
ACCTGATGAAGAATTGAGAA+GGG	0.623366	8.2:+66145372	MS.gene58343:CDS
ACTGATATGACTACTAATAC+TGG	0.417319	8.2:+66145938	MS.gene58343:CDS
ACTTCTGCAATCATGACGAG+TGG	0.638146	8.2:+66144526	MS.gene58343:CDS
AGAAGCTTTGGCAACAGTAT+AGG	0.473733	8.2:-66145837	None:intergenic
AGATGGGAGAACCGACAAAA+AGG	0.395672	8.2:+66142521	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATGACAAACAATCTC+AGG	-	chr8.2:66144261-66144280	None:intergenic	30.0%
AACATGTATCAACTCTAGTA+AGG	-	chr8.2:66144416-66144435	None:intergenic	30.0%
AAGAATGACAAACAATCTCA+GGG	-	chr8.2:66144260-66144279	None:intergenic	30.0%
AAGGAAAGAACAACAAAAAC+AGG	-	chr8.2:66144105-66144124	None:intergenic	30.0%
AATCTGACATTTGATATGAC+TGG	-	chr8.2:66143923-66143942	None:intergenic	30.0%
ACAGGAAGAAGAAAAAAAAC+CGG	-	chr8.2:66144087-66144106	None:intergenic	30.0%
ACATAAGCAACTCAAAGATA+TGG	-	chr8.2:66144050-66144069	None:intergenic	30.0%
ACTGATATGACTACTAATAC+TGG	+	chr8.2:66145938-66145957	MS.gene58343:CDS	30.0%
ATATCAGTCTTAACATAACC+AGG	-	chr8.2:66145926-66145945	None:intergenic	30.0%
ATCTGACATTTGATATGACT+GGG	-	chr8.2:66143922-66143941	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	66142523	66146069	66142523	ID=MS.gene58343
chr8.2	mRNA	66142523	66146069	66142523	ID=MS.gene58343.t1;Parent=MS.gene58343
chr8.2	exon	66142523	66142542	66142523	ID=MS.gene58343.t1.exon1;Parent=MS.gene58343.t1
chr8.2	CDS	66142523	66142542	66142523	ID=cds.MS.gene58343.t1;Parent=MS.gene58343.t1
chr8.2	exon	66142642	66142888	66142642	ID=MS.gene58343.t1.exon2;Parent=MS.gene58343.t1
chr8.2	CDS	66142642	66142888	66142642	ID=cds.MS.gene58343.t1;Parent=MS.gene58343.t1
chr8.2	exon	66144475	66144549	66144475	ID=MS.gene58343.t1.exon3;Parent=MS.gene58343.t1
chr8.2	CDS	66144475	66144549	66144475	ID=cds.MS.gene58343.t1;Parent=MS.gene58343.t1
chr8.2	exon	66145367	66145543	66145367	ID=MS.gene58343.t1.exon4;Parent=MS.gene58343.t1
chr8.2	CDS	66145367	66145543	66145367	ID=cds.MS.gene58343.t1;Parent=MS.gene58343.t1
chr8.2	exon	66145692	66146069	66145692	ID=MS.gene58343.t1.exon5;Parent=MS.gene58343.t1
chr8.2	CDS	66145692	66146069	66145692	ID=cds.MS.gene58343.t1;Parent=MS.gene58343.t1

Gene Sequence

>MS.gene58343

ATGGGAGAACCGACAAAAAGGTAGTATGATCAAATCATTTTACTAGAATCTTTATCATATCCCAAACAGGTTCTTGAATATTTTGGATCTTTCTTATCCTTGTGCCTCTCTTCTTTTAGGTATGCAGTGGTGACAGGATCAAACAAAGGAATTGGGTTAGAGATAGTAAGGCAGTTAGCTTCAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAGAAAAGAGGTCTTCATGCTTTTGAAACACTCAAAGCTTCTGGTCTTTCTGACTTTGTTGTATTTCATCAACTAGATGTTGCTGATGCAGCAAGTGTAGCCTCTCTTGCAGATTTTGTCAAATCCCAATTTGGCAAACTTGATATTCTGGTAACAAGAAAATTTAATCAACTGTTAAATATGTTTTAGCGAAAGAAAAAATCTTTTGATGTTAGTCCATCTAAAAGTTTTAACCCTTTTTAGTCTTAACATTGGTCGATTCTATGATGCATAAATGAAAAAGTCTTGTATTATGAAGTTAGTTTCTACTATTAGATGAATAAATACCACCATTAAATCAAATGAAATCTATTGTAATTATTAGATCCAATGATGAAAAAGACATGTATGCATGCATGGTGCAAGATCATTTTGTGCATGTTAGACAAAGACGTTATAACACTATACAAGTGTGTGCTAATAGTTTTACAGAAGAACTATAAAGTATCTTATTTATATAAATTTGGAGGAATAAAAATTGATATTTTTTTTGAGACATATTTAACCCATTAATGAATATATTATATATACACTAGTAAGTAGTAACTGAAGAAATATTTAGCACATCTTGAAATTTCTACCCATTAGACTAAAGTGAAACAATAATTCACTTGATATTGCATGCTTTACAATGTTCTTCTATAGTTTTTTCGATCTTCTTTAGGTTCCATTGTAAGCTAGGGAATTCATCGTGGTATTCGAGTTTTTTATTTATTTAATTTTAATTCATTTATGCAAGTCATTTCCTTAGGCATGGTAAAGGGACCCACACCCTTGGGTACCCACCCCATTCCATAACCACCACCCGTGACTTTGATGGAAAATACCTTTTTTCATGGGGTTCGAGTTAGAGTTTTTTTTCTAATAAGGACTGATATTTGAACAACTATTTAGGACAACTTTTGTTATTAACTTCTTTTTTCTCACTTTTCATTGGTCAAGAACAATGGAGAGAGAAAAAGGAAGAGAGAGAATAAAAACATAATGTGAGTATGAGAGAGAGTTGTCATAAAATGGTTGTACAAATATCATTTCTCTTTTCTAATATACACTAACATTATTAGAGATGTTGATGGTGGTGTTGAGGATGGAGACATGATAATATAAATTTGAGGATTGGGAGTGCGGAGTAATCATCGTCCCCAGTCATATCAAATGTCAGATTTGCATTCGGTATGAGTTGCGGGCGGAGCCTTTACTATGTTGGAACCAATAGGGAGATGTAGGATTCAATGATGGATTCAACCTATGTGGGTGTTTGGATGGGGCCCATATCTTTGAGTTGCTTATGTGGGTTGGCCTTTGTCCGGTTTTTTTTCTTCTTCCTGTTTTTGTTGTTCTTTCCTTTTCGACTTTATTGTTGGAGTTGTTAGTTGTTATTTTGAGTGTGCAGGTAGGGTTCCTTTTGTTGTTTGGGGTTTCCGTTTCTTTTCTTGGTCTTGGTGCTTGGTTGGTGGTCCCCTGCGCTGGGTTTTTCCACCCTGAGATTGTTTGTCATTCTTTTTCCATTGTTATATATTCTTTTGAAATAAAAAAAATGTCGCATTTCATATAGGTGATAATACTTATTTTAGTATTAAATAGGATAGTTTCCATTTAACCAGCTTGATAAAAAAAATTCAGTCATTATAAGTTCCTTACTAGAGTTGATACATGTTGTTTGTATATATTTCTTGAATAAAGATTGTATCATGTAGGTTAACAATGCTGGGATTAGCGGGGCTGAAGTTAAAGACCGTGATTTATTCACTTCTGCAATCATGACGAGTGGGGTTAGTATATACAAACTTTGAAACTTACCTATGTTGTGTATCTATTGAATAAAAGTTAAAAAGTTGATTGCATCTGCACTGAATCGATGCTGATCAATTTGCTACTTTTTTTTTTATCAATTTGAACATCCATCATAAATATGTACCGGAAATTGTATTAAGATTTTTTACCAACCAAAACAGTAAATTTTAATATTTCCTATTAAGCATTATTTTACTCGAGTACTAACAATAATACAATGAAGATTCTTATTGTTTCTTCTGGTCATATCTGTGTAGTATTGACATTCTTATAGTTAATGTTCAATGCCAACCAAATTCTGAAAGAGAATCTTTAGTATGATGGAATATATTGGTCTAGGTGTTTTAATTTATTTGGTCTTGCAGCCACGGCGATATGTTTATGGGTGGAGTATGAATTCTCTATACTGGCGGCACCAATGCAAGTGATTGCACTTGCACTGATGCAATAATTTCAAAACCGTTGGATCTGATTACAAGTGGGTATCCAACGGTTTTGTAGCCACTTTACCATTATTGCACAAGATAAATGTCATGATATTTTTTATTTTTTTTTAACATCAATGTCATGATATATTCATTGTAGCCAAATTAAAAGCTTTGGTTTTCTCCCTTCCTTATGAATAAGCCACCTCACTACATGAAAATGTCATGATATATAAGAAGTACTAGTCTATAATTGTCTTGTGAAATTTGAAACTGGAAGCTGTTCGAAGTTTATTATGTTTAATAGTTTTGTTTTTAGGACATGGATATTTTTATTGGTTTTAATTTTTGAGTTGTTCTCATCTTGCAGGCACTACCTGATGAAGAATTGAGAAGGGCAGTAACACAAACATATGAGTCAGCTAAAGAATGCATTCAAATAAATTATTATGGTGCTAAAAGAACATTTGAATACCTTCTTCCCCTTCTTCAATTATCTGATTCGCCAAGAGTAGTCAATGTATCATCATTTTTGGGCAAGACAGAGGTAAGCTAATAAGTACATTTATGATCTATTTAATTTTTAAAGTTTTTAATGAGCCAAACTTGCAATTTTTTAATTTTTCTAAGCACATGCACTTTGTTATTTTCCTTTGACCAAATTTGCATTATCACTAATATTGATGTCAAAGCAGCTTGTATCAAATGAATGGGCTAAAGGAGTCTTAACTGATGTTGATAACCTCACAGAAGATAGAATAGATGAAGTGATAATGGAGTTTATCAAAGATTTTGAAGAAGGGTCCTTAGAAAGAAAAGGCTGGCCTAGGTTTGCAGCTGCCTATACTGTTGCCAAAGCTTCTATGAATGCCTATACAAGAATTCTTGCAAAGAAATATCCTACCTTCTGCATCAACTGTGTTTGCCCTGGTTATGTTAAGACTGATATGACTACTAATACTGGTATGTTGACAGTAGAAGAAGGAGCTGCAAATCCAGTTAGGTTAGCACTACTTTCCAATGGTAGTCCATCTGGCCTCTTCTATAGTCAGAACAAAATCTCTTCGTTTTGA

Protein sequence

>MS.gene58343.t1

MGEPTKRYAVVTGSNKGIGLEIVRQLASAGIKVVLTARDEKRGLHAFETLKASGLSDFVVFHQLDVADAASVASLADFVKSQFGKLDILVNNAGISGAEVKDRDLFTSAIMTSGALPDEELRRAVTQTYESAKECIQINYYGAKRTFEYLLPLLQLSDSPRVVNVSSFLGKTELVSNEWAKGVLTDVDNLTEDRIDEVIMEFIKDFEEGSLERKGWPRFAAAYTVAKASMNAYTRILAKKYPTFCINCVCPGYVKTDMTTNTGMLTVEEGAANPVRLALLSNGSPSGLFYSQNKISSF