AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39579.t1 MTR_4g087460 94.357 319 10 2 1 318 1 312 0.0 615
MS.gene39579.t1 MTR_3g098470 42.053 302 149 9 16 310 29 311 3.19e-74 231
MS.gene39579.t1 MTR_1g031180 40.000 300 158 8 16 310 34 316 8.19e-67 212
MS.gene39579.t1 MTR_8g096060 40.000 300 155 9 16 310 31 310 4.90e-66 210
MS.gene39579.t1 MTR_7g076660 40.000 300 145 8 24 310 9 286 4.16e-64 204
MS.gene39579.t1 MTR_7g076660 40.000 300 145 8 24 310 10 287 5.37e-64 204
MS.gene39579.t1 MTR_7g076655 39.000 300 148 8 24 310 9 286 4.99e-60 194
MS.gene39579.t1 MTR_5g062280 38.436 307 143 7 19 302 4 287 9.33e-59 191
MS.gene39579.t1 MTR_8g031980 36.808 307 147 8 21 302 6 290 9.43e-59 191
MS.gene39579.t1 MTR_7g076660 37.809 283 141 8 41 310 2 262 5.66e-55 180
MS.gene39579.t1 MTR_8g032000 36.842 304 145 8 24 302 9 290 1.93e-54 179
MS.gene39579.t1 MTR_8g031960 35.738 305 149 8 23 302 9 291 6.34e-54 178
MS.gene39579.t1 MTR_8g032010 34.628 309 155 8 20 303 5 291 9.21e-54 178
MS.gene39579.t1 MTR_8g031610 36.334 311 151 9 24 310 7 294 5.16e-53 176
MS.gene39579.t1 MTR_8g031910 37.255 306 156 9 19 310 4 287 8.91e-53 175
MS.gene39579.t1 MTR_8g031990 33.228 316 164 8 20 310 5 298 1.36e-52 175
MS.gene39579.t1 MTR_8g031940 35.463 313 154 9 24 310 9 299 9.78e-52 172
MS.gene39579.t1 MTR_8g031600 37.459 307 145 9 22 303 7 291 9.00e-51 170
MS.gene39579.t1 MTR_8g031630 36.538 312 150 10 24 310 9 297 1.37e-50 169
MS.gene39579.t1 MTR_8g032020 33.866 313 159 8 24 310 10 300 2.62e-50 169
MS.gene39579.t1 MTR_7g076665 35.880 301 149 8 24 302 9 287 9.01e-50 167
MS.gene39579.t1 MTR_8g031650 36.334 311 150 10 25 310 104 391 3.49e-49 169
MS.gene39579.t1 MTR_8g031650 32.500 120 66 4 169 285 1 108 3.57e-12 67.0
MS.gene39579.t1 MTR_3g079320 36.624 314 148 9 18 302 7 298 8.78e-49 165
MS.gene39579.t1 MTR_8g031900 35.000 300 153 9 24 303 9 286 1.74e-48 164
MS.gene39579.t1 MTR_8g031650 36.334 311 150 10 25 310 270 557 9.36e-48 168
MS.gene39579.t1 MTR_8g031650 37.282 287 134 9 24 285 9 274 8.73e-47 166
MS.gene39579.t1 MTR_7g106800 42.381 210 107 6 24 230 11 209 2.60e-41 145
MS.gene39579.t1 MTR_8g031850 32.028 281 149 8 24 303 9 248 9.80e-38 135
MS.gene39579.t1 MTR_5g083430 33.333 195 110 5 109 302 1 176 1.88e-28 108
MS.gene39579.t1 MTR_8g032030 38.674 181 77 5 21 176 6 177 2.79e-27 107
MS.gene39579.t1 MTR_6g041980 31.973 147 85 5 24 167 69 203 3.62e-14 71.6
MS.gene39579.t1 MTR_6g041980 32.192 146 84 5 25 167 70 203 9.36e-14 71.2
MS.gene39579.t1 MTR_4g105310 26.384 307 170 8 24 315 51 316 9.28e-13 68.6
MS.gene39579.t1 MTR_1g100315 29.493 217 121 5 24 240 32 216 5.25e-12 65.9
MS.gene39579.t1 MTR_1g100335 26.613 248 142 5 24 271 32 239 7.03e-12 65.1
MS.gene39579.t1 MTR_1g100335 26.613 248 142 5 24 271 32 239 8.94e-12 64.7
MS.gene39579.t1 MTR_1g100335 26.613 248 142 5 24 271 32 239 1.52e-11 64.7
MS.gene39579.t1 MTR_4g105310 27.309 249 139 7 24 271 51 258 3.21e-11 63.2
MS.gene39579.t1 MTR_8g044240 35.345 116 68 3 25 137 75 186 5.83e-11 63.2
MS.gene39579.t1 MTR_3g068070 27.895 190 123 5 15 199 11 191 8.70e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39579.t1 AT3G59710 58.983 295 101 6 10 303 6 281 6.35e-116 337
MS.gene39579.t1 AT3G59710 59.233 287 98 5 17 303 24 291 8.28e-115 334
MS.gene39579.t1 AT3G59710 59.375 288 98 5 16 303 42 310 1.56e-114 334
MS.gene39579.t1 AT5G61830 43.854 301 148 8 16 310 31 316 1.08e-71 224
MS.gene39579.t1 AT5G61830 43.854 301 148 8 16 310 31 316 1.08e-71 224
MS.gene39579.t1 AT5G51030 41.000 300 155 7 16 310 32 314 1.22e-70 222
MS.gene39579.t1 AT3G61220 35.831 307 158 6 24 310 9 296 4.23e-56 184
MS.gene39579.t1 AT3G61220 35.831 307 158 6 24 310 16 303 6.65e-56 184
MS.gene39579.t1 AT3G61220 35.831 307 158 6 24 310 40 327 1.47e-55 183
MS.gene39579.t1 AT1G01800 34.839 310 160 7 23 310 6 295 1.67e-53 177
MS.gene39579.t1 AT2G24190 34.365 323 165 8 8 310 6 301 2.99e-53 177
MS.gene39579.t1 AT2G24190 34.528 307 162 6 24 310 9 296 1.33e-52 175
MS.gene39579.t1 AT1G01800 31.500 200 118 4 112 310 79 260 1.63e-28 111
MS.gene39579.t1 AT4G09750 33.824 136 85 3 25 160 47 177 1.55e-13 70.5

Find 70 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATAATTCATATAAATT+AGG 0.194089 4.2:+23932380 MS.gene39579:CDS
TCCTCCTTCAAAGACAAATT+TGG 0.232306 4.2:+23931239 MS.gene39579:CDS
TAGCTCAAGACTTGGGTCTT+TGG 0.300326 4.2:+23932027 MS.gene39579:CDS
AGACTATGCAGTATCAAAAT+TGG 0.327322 4.2:+23932316 MS.gene39579:CDS
GTCAAGGGTGGCCATCATAT+TGG 0.371559 4.2:+23932291 MS.gene39579:CDS
AGTGCAGGAGAAGGAAAATA+AGG 0.378888 4.2:-23930871 None:intergenic
GGCTCCAAATTTGTCTTTGA+AGG 0.388365 4.2:-23931243 None:intergenic
GTTTAGAATTAGCAACTTGT+TGG 0.400132 4.2:-23932586 None:intergenic
GAGAGCATTCGAGCGCAAAT+AGG 0.402815 4.2:+23931143 MS.gene39579:CDS
TCTAGAGAGTGAGGACTTGA+AGG 0.406286 4.2:+23932205 MS.gene39579:CDS
TTTCTAAGAGATGTGAGAAA+TGG 0.407157 4.2:+23932257 MS.gene39579:CDS
GTCATGAAAACAAATTTCTA+TGG 0.424036 4.2:+23931920 MS.gene39579:CDS
CTCAATGTTAGCTCAAGACT+TGG 0.436992 4.2:+23932019 MS.gene39579:CDS
GGAAGAAGAGATCAAGGAAA+TGG 0.444648 4.2:+23932226 MS.gene39579:CDS
GGAGAAGGAAAATAAGGTTC+TGG 0.450582 4.2:-23930865 None:intergenic
AAGAAGAGGAGCAACGAAAG+AGG 0.458793 4.2:-23931973 None:intergenic
CCGGAGGTAACAAGGGCATT+GGG 0.462430 4.2:+23931036 MS.gene39579:CDS
ACTGCTAGAGACAAGCAAAA+AGG 0.463408 4.2:+23931107 MS.gene39579:CDS
CCGCCACACCACTTGCCCAC+TGG 0.467591 4.2:+23932530 MS.gene39579:CDS
CTTGAAGGAAGAAGAGATCA+AGG 0.478401 4.2:+23932220 MS.gene39579:CDS
CTCCTGCACTTTGCTCAACC+AGG 0.481741 4.2:+23930884 MS.gene39579:CDS
TATGCAGAAGGTGACAAACT+TGG 0.485647 4.2:+23932169 MS.gene39579:intron
GTCTTTGAAGGAGGATGCAA+AGG 0.489278 4.2:-23931231 None:intergenic
ACCGGAGGTAACAAGGGCAT+TGG 0.496161 4.2:+23931035 MS.gene39579:CDS
AGAAGAGGAGCAACGAAAGA+GGG 0.498513 4.2:-23931972 None:intergenic
CCCAATGCCCTTGTTACCTC+CGG 0.499855 4.2:-23931036 None:intergenic
ACTCAAACCTCAATGACAAA+AGG 0.505232 4.2:+23932449 MS.gene39579:CDS
ATTGAGGTTTGAGTGAAGCC+AGG 0.506250 4.2:-23932440 None:intergenic
AACCTCAATGACAAAAGGTA+AGG 0.507566 4.2:+23932454 MS.gene39579:CDS
GATGGAAGAATTAGAAGAAG+AGG 0.514502 4.2:-23931987 None:intergenic
AGACAAATTTGGAGCCACCT+TGG 0.518797 4.2:+23931250 MS.gene39579:CDS
TGGTCCCAAGTTGCTTATAG+AGG 0.521817 4.2:+23931940 MS.gene39579:CDS
GAGACGGTAGCGGTGGTGAC+CGG 0.523844 4.2:+23931017 MS.gene39579:CDS
GGTGGTGACCGGAGGTAACA+AGG 0.525486 4.2:+23931028 MS.gene39579:CDS
TCCAAATTTGTCTTTGAAGG+AGG 0.528089 4.2:-23931240 None:intergenic
GTGGTCGAAGGAGACGGTAG+CGG 0.531902 4.2:+23931007 MS.gene39579:CDS
TGAATGAAGGTGGTGGTCGA+AGG 0.543250 4.2:+23930995 MS.gene39579:intron
GCATAGTCTGTCCAATATGA+TGG 0.543911 4.2:-23932302 None:intergenic
TACCTGGTTGAGCAAAGTGC+AGG 0.547617 4.2:-23930886 None:intergenic
AACATTGAGAATACGTGTGA+TGG 0.548769 4.2:-23932005 None:intergenic
AAATGCATACTCAAAAGTGT+TGG 0.552148 4.2:+23932343 MS.gene39579:CDS
AATCAGCATCTGAGACATCA+AGG 0.556283 4.2:-23931199 None:intergenic
AGAATTAGCAACTTGTTGGA+AGG 0.559112 4.2:-23932582 None:intergenic
TTTCCAGTGGGCAAGTGGTG+TGG 0.562735 4.2:-23932533 None:intergenic
AAGTGCCTCTATAAGCAACT+TGG 0.563609 4.2:-23931945 None:intergenic
GAAAAGAATTCTAGAGAGTG+AGG 0.571043 4.2:+23932196 MS.gene39579:CDS
AGTGCCTCTATAAGCAACTT+GGG 0.573541 4.2:-23931944 None:intergenic
CCAGTGGGCAAGTGGTGTGG+CGG 0.576832 4.2:-23932530 None:intergenic
ATTAGCAACTTGTTGGAAGG+TGG 0.582292 4.2:-23932579 None:intergenic
GAAGAGGAGCAACGAAAGAG+GGG 0.583471 4.2:-23931971 None:intergenic
TCAATGTTAGCTCAAGACTT+GGG 0.584941 4.2:+23932020 MS.gene39579:CDS
ATGGAACATGGAAGAGTCAA+GGG 0.592718 4.2:+23932276 MS.gene39579:CDS
TTGAGGTTTGAGTGAAGCCA+GGG 0.599643 4.2:-23932439 None:intergenic
GTCGAAGGAGACGGTAGCGG+TGG 0.601525 4.2:+23931010 MS.gene39579:CDS
AATGGAACATGGAAGAGTCA+AGG 0.605080 4.2:+23932275 MS.gene39579:CDS
GTTGAGCAAAGTGCAGGAGA+AGG 0.605589 4.2:-23930880 None:intergenic
CATGGTCCACTGAATTCTCG+TGG 0.607377 4.2:-23931889 None:intergenic
GAGATGTGAGAAATGGAACA+TGG 0.612549 4.2:+23932264 MS.gene39579:CDS
AATACATACGAGAATATCCA+AGG 0.618479 4.2:-23931267 None:intergenic
ACCTCAATGACAAAAGGTAA+GGG 0.629438 4.2:+23932455 MS.gene39579:CDS
TGGCGGAAGCAACACAAGGA+TGG 0.632160 4.2:-23932513 None:intergenic
ACGGTAGCGGTGGTGACCGG+AGG 0.643306 4.2:+23931020 MS.gene39579:CDS
GTGGTGACCGGAGGTAACAA+GGG 0.643825 4.2:+23931029 MS.gene39579:CDS
ACTAGAAAGTGAACATGATG+AGG 0.645794 4.2:-23931176 None:intergenic
AAGGTGGTGGTCGAAGGAGA+CGG 0.656000 4.2:+23931001 MS.gene39579:intron
GAACATGATGAGGTGCAACA+AGG 0.658083 4.2:-23931166 None:intergenic
TGAGCTCCACGAGAATTCAG+TGG 0.667471 4.2:+23931883 MS.gene39579:CDS
GGTGTGGCGGAAGCAACACA+AGG 0.673747 4.2:-23932517 None:intergenic
GAACATGGAAGAGTCAAGGG+TGG 0.718135 4.2:+23932279 MS.gene39579:CDS
ACATACGAGAATATCCAAGG+TGG 0.779700 4.2:-23931264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAATTATA+TGG + chr4.2:23932112-23932131 MS.gene39579:intron 0.0%
!! AAATTAATCAAACATATATA+TGG - chr4.2:23930947-23930966 None:intergenic 10.0%
!! AAGTAAATTCATGAATTATT+AGG - chr4.2:23932062-23932081 None:intergenic 15.0%
!! AATAAAATTGAATAAGTAGA+AGG - chr4.2:23931298-23931317 None:intergenic 15.0%
!! TAAATATTATTATATGCAGA+AGG + chr4.2:23932157-23932176 MS.gene39579:intron 15.0%
!!! AATTAATTTTTTATGTGATC+AGG + chr4.2:23931835-23931854 MS.gene39579:intron 15.0%
!! GTGAATAAAAAATTACAACT+AGG - chr4.2:23931791-23931810 None:intergenic 20.0%
!!! AAAAGCAAAAAATATTGACT+TGG + chr4.2:23931511-23931530 MS.gene39579:intron 20.0%
!!! AAAGCAAAAAATATTGACTT+GGG + chr4.2:23931512-23931531 MS.gene39579:intron 20.0%
!!! CACATAAATATGTTTTTGAA+AGG + chr4.2:23931808-23931827 MS.gene39579:intron 20.0%
! AATGACACATTTATTACTAG+AGG - chr4.2:23931359-23931378 None:intergenic 25.0%
! AGTAACTAATATGGATAGAT+CGG + chr4.2:23931544-23931563 MS.gene39579:intron 25.0%
! ATTCATGAATTTACTTTACC+AGG + chr4.2:23932066-23932085 MS.gene39579:intron 25.0%
! CATAATTCGAGTAACTAATA+TGG + chr4.2:23931535-23931554 MS.gene39579:intron 25.0%
! GTCATGAAAACAAATTTCTA+TGG + chr4.2:23931920-23931939 MS.gene39579:CDS 25.0%
! GTTTCACAATGATAAACATT+TGG + chr4.2:23931401-23931420 MS.gene39579:intron 25.0%
! TATTTGTGCTAAATGAATGA+AGG + chr4.2:23930982-23931001 MS.gene39579:intron 25.0%
! TTATCATTGTGAAACTAAGA+GGG - chr4.2:23931396-23931415 None:intergenic 25.0%
! TTTACCAGGTTAATATAAGT+TGG + chr4.2:23932080-23932099 MS.gene39579:intron 25.0%
! TTTATCATTGTGAAACTAAG+AGG - chr4.2:23931397-23931416 None:intergenic 25.0%
AATACATACGAGAATATCCA+AGG - chr4.2:23931270-23931289 None:intergenic 30.0%
AGACTATGCAGTATCAAAAT+TGG + chr4.2:23932316-23932335 MS.gene39579:CDS 30.0%
ATAGTAGGATTGAAAAGATG+AGG - chr4.2:23930912-23930931 None:intergenic 30.0%
CTTTGGTCAAAAAATTGTCT+AGG - chr4.2:23931750-23931769 None:intergenic 30.0%
TGGCATTAAATGTGTATAGT+AGG - chr4.2:23930927-23930946 None:intergenic 30.0%
! AAATGCATACTCAAAAGTGT+TGG + chr4.2:23932343-23932362 MS.gene39579:CDS 30.0%
! GTTTAGAATTAGCAACTTGT+TGG - chr4.2:23932589-23932608 None:intergenic 30.0%
! TTTCTAAGAGATGTGAGAAA+TGG + chr4.2:23932257-23932276 MS.gene39579:CDS 30.0%
!! AACCAAGATAGTGTTGATAA+TGG + chr4.2:23931652-23931671 MS.gene39579:intron 30.0%
!! ACCAAGATAGTGTTGATAAT+GGG + chr4.2:23931653-23931672 MS.gene39579:intron 30.0%
AACATTGAGAATACGTGTGA+TGG - chr4.2:23932008-23932027 None:intergenic 35.0%
AACCTCAATGACAAAAGGTA+AGG + chr4.2:23932454-23932473 MS.gene39579:CDS 35.0%
ACCCATTATCAACACTATCT+TGG - chr4.2:23931657-23931676 None:intergenic 35.0%
ACCTCAATGACAAAAGGTAA+GGG + chr4.2:23932455-23932474 MS.gene39579:CDS 35.0%
ACTAGAAAGTGAACATGATG+AGG - chr4.2:23931179-23931198 None:intergenic 35.0%
ACTCAAACCTCAATGACAAA+AGG + chr4.2:23932449-23932468 MS.gene39579:CDS 35.0%
GACACATTTATTACTAGAGG+TGG - chr4.2:23931356-23931375 None:intergenic 35.0%
GATGGAAGAATTAGAAGAAG+AGG - chr4.2:23931990-23932009 None:intergenic 35.0%
GTGACCAACTTATATTAACC+TGG - chr4.2:23932087-23932106 None:intergenic 35.0%
TCAATGTTAGCTCAAGACTT+GGG + chr4.2:23932020-23932039 MS.gene39579:CDS 35.0%
TCCTCCTTCAAAGACAAATT+TGG + chr4.2:23931239-23931258 MS.gene39579:CDS 35.0%
TTGTGCTAAATGAATGAAGG+TGG + chr4.2:23930985-23931004 MS.gene39579:intron 35.0%
! AGCAAGAAGAATTTTCCAGT+GGG - chr4.2:23932548-23932567 None:intergenic 35.0%
! CAACACTATCTTGGTTTGAA+AGG - chr4.2:23931648-23931667 None:intergenic 35.0%
! GAAAAGAATTCTAGAGAGTG+AGG + chr4.2:23932196-23932215 MS.gene39579:CDS 35.0%
! TCCAAATTTGTCTTTGAAGG+AGG - chr4.2:23931243-23931262 None:intergenic 35.0%
! TTTTCATGACGTTTTCAGCA+TGG - chr4.2:23931910-23931929 None:intergenic 35.0%
!! AGAATTAGCAACTTGTTGGA+AGG - chr4.2:23932585-23932604 None:intergenic 35.0%
AAGTGCCTCTATAAGCAACT+TGG - chr4.2:23931948-23931967 None:intergenic 40.0%
AATGGAACATGGAAGAGTCA+AGG + chr4.2:23932275-23932294 MS.gene39579:CDS 40.0%
ACATACGAGAATATCCAAGG+TGG - chr4.2:23931267-23931286 None:intergenic 40.0%
ACTGCTAGAGACAAGCAAAA+AGG + chr4.2:23931107-23931126 MS.gene39579:CDS 40.0%
AGTGCAGGAGAAGGAAAATA+AGG - chr4.2:23930874-23930893 None:intergenic 40.0%
AGTGCCTCTATAAGCAACTT+GGG - chr4.2:23931947-23931966 None:intergenic 40.0%
ATGGAACATGGAAGAGTCAA+GGG + chr4.2:23932276-23932295 MS.gene39579:CDS 40.0%
CTCAATGTTAGCTCAAGACT+TGG + chr4.2:23932019-23932038 MS.gene39579:CDS 40.0%
CTTGAAGGAAGAAGAGATCA+AGG + chr4.2:23932220-23932239 MS.gene39579:CDS 40.0%
GAGATGTGAGAAATGGAACA+TGG + chr4.2:23932264-23932283 MS.gene39579:CDS 40.0%
GCATAGTCTGTCCAATATGA+TGG - chr4.2:23932305-23932324 None:intergenic 40.0%
GGAAGAAGAGATCAAGGAAA+TGG + chr4.2:23932226-23932245 MS.gene39579:CDS 40.0%
GGAGAAGGAAAATAAGGTTC+TGG - chr4.2:23930868-23930887 None:intergenic 40.0%
GGCTCCAAATTTGTCTTTGA+AGG - chr4.2:23931246-23931265 None:intergenic 40.0%
TAGAGACAAGCAAAAAGGAG+AGG + chr4.2:23931112-23931131 MS.gene39579:CDS 40.0%
TATGCAGAAGGTGACAAACT+TGG + chr4.2:23932169-23932188 MS.gene39579:intron 40.0%
TGCTAAATGAATGAAGGTGG+TGG + chr4.2:23930988-23931007 MS.gene39579:intron 40.0%
! AATCAGCATCTGAGACATCA+AGG - chr4.2:23931202-23931221 None:intergenic 40.0%
! GAGCAAGAAGAATTTTCCAG+TGG - chr4.2:23932549-23932568 None:intergenic 40.0%
! GATTGAAAAGATGAGGTACC+TGG - chr4.2:23930905-23930924 None:intergenic 40.0%
! GTGAAACGTTTTGCTGAGTT+GGG + chr4.2:23931068-23931087 MS.gene39579:CDS 40.0%
! TGTGAAACGTTTTGCTGAGT+TGG + chr4.2:23931067-23931086 MS.gene39579:CDS 40.0%
!! ATTAGCAACTTGTTGGAAGG+TGG - chr4.2:23932582-23932601 None:intergenic 40.0%
AAGAAGAGGAGCAACGAAAG+AGG - chr4.2:23931976-23931995 None:intergenic 45.0%
ACTAGGTCCATGTCTAGTCT+TGG - chr4.2:23931774-23931793 None:intergenic 45.0%
AGAAGAGGAGCAACGAAAGA+GGG - chr4.2:23931975-23931994 None:intergenic 45.0%
ATTGAGGTTTGAGTGAAGCC+AGG - chr4.2:23932443-23932462 None:intergenic 45.0%
CCAAAGACCAAGACTAGACA+TGG + chr4.2:23931764-23931783 MS.gene39579:intron 45.0%
GAACATGATGAGGTGCAACA+AGG - chr4.2:23931169-23931188 None:intergenic 45.0%
TAGCTCAAGACTTGGGTCTT+TGG + chr4.2:23932027-23932046 MS.gene39579:CDS 45.0%
TCTAGAGAGTGAGGACTTGA+AGG + chr4.2:23932205-23932224 MS.gene39579:CDS 45.0%
TGGTCCCAAGTTGCTTATAG+AGG + chr4.2:23931940-23931959 MS.gene39579:CDS 45.0%
TTGAGGTTTGAGTGAAGCCA+GGG - chr4.2:23932442-23932461 None:intergenic 45.0%
! AGAATTTTCCAGTGGGCAAG+TGG - chr4.2:23932541-23932560 None:intergenic 45.0%
! AGACAAATTTGGAGCCACCT+TGG + chr4.2:23931250-23931269 MS.gene39579:CDS 45.0%
! GCCCTTACCTTTTGTCATTG+AGG - chr4.2:23932459-23932478 None:intergenic 45.0%
! GTCTTTGAAGGAGGATGCAA+AGG - chr4.2:23931234-23931253 None:intergenic 45.0%
!! CCATGTCTAGTCTTGGTCTT+TGG - chr4.2:23931767-23931786 None:intergenic 45.0%
!!! AGTGTGAACTGTTTTTGCCC+TGG + chr4.2:23932422-23932441 MS.gene39579:CDS 45.0%
!! ATTAATAATTCATATAAATT+AGG + chr4.2:23932380-23932399 MS.gene39579:CDS 5.0%
CATGGTCCACTGAATTCTCG+TGG - chr4.2:23931892-23931911 None:intergenic 50.0%
GAACATGGAAGAGTCAAGGG+TGG + chr4.2:23932279-23932298 MS.gene39579:CDS 50.0%
GAAGAGGAGCAACGAAAGAG+GGG - chr4.2:23931974-23931993 None:intergenic 50.0%
GCAAAAAGGAGAGGATGCTG+TGG + chr4.2:23931121-23931140 MS.gene39579:CDS 50.0%
GTCAAGGGTGGCCATCATAT+TGG + chr4.2:23932291-23932310 MS.gene39579:CDS 50.0%
GTTGAGCAAAGTGCAGGAGA+AGG - chr4.2:23930883-23930902 None:intergenic 50.0%
TACCTGGTTGAGCAAAGTGC+AGG - chr4.2:23930889-23930908 None:intergenic 50.0%
TGAGCTCCACGAGAATTCAG+TGG + chr4.2:23931883-23931902 MS.gene39579:CDS 50.0%
! TGAATGAAGGTGGTGGTCGA+AGG + chr4.2:23930995-23931014 MS.gene39579:intron 50.0%
!! GAGAGCATTCGAGCGCAAAT+AGG + chr4.2:23931143-23931162 MS.gene39579:CDS 50.0%
CCCAATGCCCTTGTTACCTC+CGG - chr4.2:23931039-23931058 None:intergenic 55.0%
CTCCTGCACTTTGCTCAACC+AGG + chr4.2:23930884-23930903 MS.gene39579:CDS 55.0%
GTGGTGACCGGAGGTAACAA+GGG + chr4.2:23931029-23931048 MS.gene39579:CDS 55.0%
TGGCGGAAGCAACACAAGGA+TGG - chr4.2:23932516-23932535 None:intergenic 55.0%
TTTCCAGTGGGCAAGTGGTG+TGG - chr4.2:23932536-23932555 None:intergenic 55.0%
! AAGGTGGTGGTCGAAGGAGA+CGG + chr4.2:23931001-23931020 MS.gene39579:intron 55.0%
! ACCGGAGGTAACAAGGGCAT+TGG + chr4.2:23931035-23931054 MS.gene39579:CDS 55.0%
!! CCGGAGGTAACAAGGGCATT+GGG + chr4.2:23931036-23931055 MS.gene39579:CDS 55.0%
GGTGGTGACCGGAGGTAACA+AGG + chr4.2:23931028-23931047 MS.gene39579:CDS 60.0%
GTGGTCGAAGGAGACGGTAG+CGG + chr4.2:23931007-23931026 MS.gene39579:CDS 60.0%
! GGTGTGGCGGAAGCAACACA+AGG - chr4.2:23932520-23932539 None:intergenic 60.0%
CCAGTGGGCAAGTGGTGTGG+CGG - chr4.2:23932533-23932552 None:intergenic 65.0%
! GAGACGGTAGCGGTGGTGAC+CGG + chr4.2:23931017-23931036 MS.gene39579:CDS 65.0%
! GTCGAAGGAGACGGTAGCGG+TGG + chr4.2:23931010-23931029 MS.gene39579:CDS 65.0%
CCGCCACACCACTTGCCCAC+TGG + chr4.2:23932530-23932549 MS.gene39579:CDS 70.0%
! ACGGTAGCGGTGGTGACCGG+AGG + chr4.2:23931020-23931039 MS.gene39579:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 23930859 23932613 23930859 ID=MS.gene39579
chr4.2 mRNA 23930859 23932613 23930859 ID=MS.gene39579.t1;Parent=MS.gene39579
chr4.2 exon 23930859 23930905 23930859 ID=MS.gene39579.t1.exon1;Parent=MS.gene39579.t1
chr4.2 CDS 23930859 23930905 23930859 ID=cds.MS.gene39579.t1;Parent=MS.gene39579.t1
chr4.2 exon 23931004 23931280 23931004 ID=MS.gene39579.t1.exon2;Parent=MS.gene39579.t1
chr4.2 CDS 23931004 23931280 23931004 ID=cds.MS.gene39579.t1;Parent=MS.gene39579.t1
chr4.2 exon 23931857 23932051 23931857 ID=MS.gene39579.t1.exon3;Parent=MS.gene39579.t1
chr4.2 CDS 23931857 23932051 23931857 ID=cds.MS.gene39579.t1;Parent=MS.gene39579.t1
chr4.2 exon 23932176 23932613 23932176 ID=MS.gene39579.t1.exon4;Parent=MS.gene39579.t1
chr4.2 CDS 23932176 23932613 23932176 ID=cds.MS.gene39579.t1;Parent=MS.gene39579.t1
Gene Sequence

>MS.gene39579

ATGGAGCCAGAACCTTATTTTCCTTCTCCTGCACTTTGCTCAACCAGGTACCTCATCTTTTCAATCCTACTATACACATTTAATGCCATATATATGTTTGATTAATTTGCTTTTGCTTGTGTTTATTTGTGCTAAATGAATGAAGGTGGTGGTCGAAGGAGACGGTAGCGGTGGTGACCGGAGGTAACAAGGGCATTGGGTTTGCTCTTGTGAAACGTTTTGCTGAGTTGGGACTGAGTGTAGTGTTAACTGCTAGAGACAAGCAAAAAGGAGAGGATGCTGTGGAGAGCATTCGAGCGCAAATAGGCCTTGTTGCACCTCATCATGTTCACTTTCTAGTCCTTGATGTCTCAGATGCTGATTCTATTAAAACCTTTGCATCCTCCTTCAAAGACAAATTTGGAGCCACCTTGGATATTCTCGTATGTATTAATTACCTTCTACTTATTCAATTTTATTTTTTACATCATTTTGATTGATTTTATTCTGTCTCTCCACCTCTAGTAATAAATGTGTCATTTTATATATTAATTACCCTCTTAGTTTCACAATGATAAACATTTGGTTATTTCACAAATATATAAATAAAAGAGAGAAAATAATATTTTTAGTAAATTTATCAAGTATTTTGTATTCACAAGTATCATAAATGAAAAGCAAAAAATATTGACTTGGGCATAATTCGAGTAACTAATATGGATAGATCGGATACAAGTCAAAAAATAAAATTAAGTTTACTCACATGACTCGAACTTGAGACTTTATTTAAAAGACATGAGTTCACTTCCTTTCAAACCAAGATAGTGTTGATAATGGGTTTCTAACAACATTATCTGTTGTGTTAAACAAAATTATAAGATACAATAAGATATAAATACACACGTTAGACCTAGACAATTTTTTGACCAAAGACCAAGACTAGACATGGACCTAGTTGTAATTTTTTATTCACATAAATATGTTTTTGAAAGGATCTAATTAATTTTTTATGTGATCAGGTGAACAATGCAGCTGTATCATTCAATGAGCTCCACGAGAATTCAGTGGACCATGCTGAAAACGTCATGAAAACAAATTTCTATGGTCCCAAGTTGCTTATAGAGGCACTTCTTCCCCTCTTTCGTTGCTCCTCTTCTTCTAATTCTTCCATCACACGTATTCTCAATGTTAGCTCAAGACTTGGGTCTTTGGATGTAAGTACCTAATAATTCATGAATTTACTTTACCAGGTTAATATAAGTTGGTCACATGCATAAAAAAAAAAAAAATTATATGGCATATTCTATGCGTGCTCAAACTAAATATTATTATATGCAGAAGGTGACAAACTTGGAAATGAAAAGAATTCTAGAGAGTGAGGACTTGAAGGAAGAAGAGATCAAGGAAATGGTGAGAAAATTTCTAAGAGATGTGAGAAATGGAACATGGAAGAGTCAAGGGTGGCCATCATATTGGACAGACTATGCAGTATCAAAATTGGCTCTAAATGCATACTCAAAAGTGTTGGCTAAGAGATATAACATTAATAATTCATATAAATTAGGAAATACAACAAAGTTGATGAGTGTGAACTGTTTTTGCCCTGGCTTCACTCAAACCTCAATGACAAAAGGTAAGGGCACTCACACTGCTGATCAAGCTGCTTCTCTTGCTACCATCCTTGTGTTGCTTCCGCCACACCACTTGCCCACTGGAAAATTCTTCTTGCTCAGAAATAATACCACCTTCCAACAAGTTGCTAATTCTAAACTATGA
Protein sequence

>MS.gene39579.t1

MEPEPYFPSPALCSTRWWSKETVAVVTGGNKGIGFALVKRFAELGLSVVLTARDKQKGEDAVESIRAQIGLVAPHHVHFLVLDVSDADSIKTFASSFKDKFGATLDILVNNAAVSFNELHENSVDHAENVMKTNFYGPKLLIEALLPLFRCSSSSNSSITRILNVSSRLGSLDKVTNLEMKRILESEDLKEEEIKEMVRKFLRDVRNGTWKSQGWPSYWTDYAVSKLALNAYSKVLAKRYNINNSYKLGNTTKLMSVNCFCPGFTQTSMTKGKGTHTADQAASLATILVLLPPHHLPTGKFFLLRNNTTFQQVANSKL